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New recorded diatoms in Holocene sediment cores from the Gonggeom-ji Wetland in Korea 韩国贡贡记湿地全新世沉积物岩心中新记录的硅藻
Q3 Immunology and Microbiology Pub Date : 2023-01-20 DOI: 10.1186/s42649-023-00086-5
Daeryul Kwon, Mirye Park, Hoil Lee, Jin-Young Lee, Sang Deuk Lee

The Gonggeom-ji reservoir is an agricultural one built for rice farming during the Proto-Three Kingdoms period and was designated as Gyeongsangbuk-do monument No. 121 because of its high historical value. The Nakdonggang National Institute of Biological Resources has been conducting paleontological and paleoenvironmental studies on major wetlands from Korea since 2016, as well as diatom, geological, and depth distribution analyses on the sedimentary soil of Gonggeom-ji. This study summarized the description and ecological characteristics of six newly recorded diatoms (Gomphonema lacusrankala, Pinnularia diandae, P. gibba var. hyaline, P. lacunarum, Sellaphora labda var. nipponica, Stauroneis angustilancea) found in samples collected through drilling in Gonggeom-ji in 2019.

公形池是原三国时期为种植水稻而建造的农业水库,因具有很高的历史价值而被指定为庆尚北道第121号纪念物。洛东江国立生物资源研究所从2016年开始对国内主要湿地进行了古生物学和古环境研究,并对公形集沉积土壤进行了硅藻、地质、深度分布分析。摘要总结了2019年在贡geomo -ji钻孔中发现的6种新记录硅藻(Gomphonema lacusrankala, Pinnularia diandae, P. gibba var. hyaline, P. lacunarum, Sellaphora labda var. nipponica, souroneis angustilancea)的描述和生态特征。
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引用次数: 0
Environmental factors affecting akinete germination and resting cell awakening of two cyanobacteria 影响两种蓝藻芽胞萌发和静息细胞觉醒的环境因素
Q3 Immunology and Microbiology Pub Date : 2023-01-17 DOI: 10.1186/s42649-023-00085-6
Daeryul Kwon, Keonhee Kim, Hyunjin Jo, Sang Deuk Lee, Suk Min Yun, Chaehong Park

Globally, cyanobacteria frequently cause blooms that outcompete other species in the waterbody, affecting the diversity, decreasing water exchange rates, and promoting eutrophication that leads to excessive algal growth. Here, Dolichospermum circinale (akinetes) and Microcystic aeruginosa (resting cells), were isolated from the sediment in the Uiam Dam in the North Han River and near Ugok Bridge in the Nakdong River, respectively. The morphology, germination process and rates, and growth was evaluated in different environmental conditions. D. cercinalis germination began on day two of culturing, with maximum cell growth observed on day ten. In contrast, M. aeruginosa exhibited daily increase in cell density and colony size, with notable density increase on day six. Next, different environmental conditions were assessed. Akinetes exhibited high germination rates at low light intensity (5—30 µmol/m2/s), whereas resting cells exhibited high growth rates at high light intensity (50—100 µmol/m2/s). Furthermore, both cell types exhibited optimum germination and growth in media containing N and P at 20—30° at a pH of 7—9. Our study reveals the optimum conditions for the germination and growth of cyanobacterial akinetes and resting cells isolated from river sediment, respectively, and will assist in predicting cyanobacterial blooms for appropriate management.

在全球范围内,蓝藻经常导致水华,在水体中与其他物种竞争,影响多样性,降低水交换率,促进富营养化,导致藻类过度生长。本文分别从北汉江的岩岩大坝和洛东江的玉谷大桥附近的沉积物中分离出了圆形多胞菌(活动菌)和微囊铜绿菌(静息细胞)。在不同的环境条件下,对其形态、萌发过程、速率和生长进行了评价。培养后第2天开始萌发,第10天细胞生长达到最大值。相比之下,铜绿假单胞菌的细胞密度和菌落大小呈逐日增加的趋势,在第6天显著增加。其次,对不同的环境条件进行了评估。在低光强(5-30µmol/m2/s)下,Akinetes的萌发率较高,而在高光强(50-100µmol/m2/s)下,静息细胞的生长率较高。两种细胞在20 ~ 30°含氮和磷、pH为7 ~ 9的培养基中均表现出最佳的萌发和生长。我们的研究揭示了从河流沉积物中分离的蓝藻动胞菌和静息细胞的萌发和生长的最佳条件,并将有助于预测蓝藻华的适当管理。
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引用次数: 1
Changes of lysosome by L-serine in rotenone-treated hippocampal neurons 鱼藤酮处理海马神经元中l -丝氨酸对溶酶体的影响
Q3 Immunology and Microbiology Pub Date : 2023-01-10 DOI: 10.1186/s42649-022-00084-z
Sumin Shin, Su-Kyeong Hwang, Ji Young Mun

Oxidative stress destroys cellular organelles and damages DNA, eventually leading to degenerative brain disorders. Persistent mitochondrial damage by oxidative stress eventually causes cells to inhibit the function of lysosomes. Rotenone used in this study inhibits complex 1 of the mitochondrial electron transport chain. Due to this inhibition, the production of free radicals is promoted, and oxidative stress can occur. To test as a role of antioxidant, L-serine was treated before treatment of rotenone to HT22 hippocampal cells. Then, changes in the activity and structure of lysosomes were analyzed. As a result, the oxidative stress caused by rotenone in HT22 cells was protected by L-serine. L-serine reduced free radicals in cells, and the damaged lysosomal structure and lysosome activity were also protected.

氧化应激会破坏细胞器,破坏DNA,最终导致大脑退行性疾病。氧化应激引起的持续线粒体损伤最终导致细胞抑制溶酶体的功能。本研究中使用的鱼藤酮抑制线粒体电子传递链复合体1。由于这种抑制,自由基的产生被促进,并可能发生氧化应激。为了测试l -丝氨酸作为抗氧化剂的作用,在鱼藤酮治疗前处理l -丝氨酸对HT22海马细胞的作用。然后分析溶酶体活性和结构的变化。结果表明,鱼藤酮引起的HT22细胞氧化应激受到l -丝氨酸的保护。l -丝氨酸减少了细胞中的自由基,并保护了受损的溶酶体结构和活性。
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引用次数: 0
EPMA quantification on the chemical composition of retained austenite in a Fe-Mn-Si-C-based multi-phase steel fe - mn - si - c基多相钢残余奥氏体化学成分的EPMA定量分析
Q3 Immunology and Microbiology Pub Date : 2022-12-20 DOI: 10.1186/s42649-022-00083-0
Yoon-Uk Heo, Chang-Gon Jeong, Soo-Hyun Kim, Gun-Young Yoon, T. T. T. Trang, Youngyun Woo, Eun Yoo Yoon, Young-Seon Lee

An electron probe X-ray microanalyzer (EPMA) is an essential tool for studying chemical composition distribution in the microstructure. Quantifying chemical composition using standard specimens is commonly used to determine the composition of individual phases. However, the local difference in chemical composition in the standard specimens brings the deviation of the quantified composition from the actual one. This study introduces how to overcome the error of quantification in EPMA in the practical aspect. The obtained results are applied to evaluate the chemical composition of retained austenite in multi-phase steel. Film-type austenite shows higher carbon content than blocky-type one. The measured carbon contents of the retained austenite show good coherency with the calculated value from the X-ray diffraction.

电子探针x射线显微分析仪(EPMA)是研究微观结构中化学成分分布的重要工具。使用标准样品定量化学成分通常用于确定各个相的组成。然而,由于标准样品中化学成分的局部差异,导致定量成分与实际成分存在偏差。本文介绍了在实际应用中如何克服EPMA的量化误差。将所得结果应用于评价多相钢中残余奥氏体的化学成分。膜型奥氏体碳含量高于块状奥氏体。测定的残余奥氏体碳含量与x射线衍射计算值具有较好的一致性。
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引用次数: 1
Histological study on the skin structure in two mudskippers, Periophthalmus waltoni and Boleophthalmus dussumieri in relation to their terrestrial life 两种弹涂鱼,waltoni眼周和Boleophthalmus dussumieri皮肤结构与陆地生活关系的组织学研究
Q3 Immunology and Microbiology Pub Date : 2022-12-16 DOI: 10.1186/s42649-022-00081-2
Mehran Dorostghoal, Ashraf Jazayeri, Sara Ashiri

Microscopic structure of skin in two amphibious mudskipper fish; Boleophthalmus dussumieri Valenciennes, 1837 (B. dussumeri) and Periophthalmus waltoni Koumans, 1941 (P. waltoni) were investigated in relation to their lifestyle. The general structure of skin is the same among the two species. Epidermis in B. dussumeri was thicker significantly than P. waltoni. The dermal bulges were only well developed in the skin of B. dussumeri. Mucous cells were absent in the epidermis of P. waltoni but present in B. dussumeri. Both B. dussumeri and P. waltoni have well-developed swollen middle cells as a shared epidermal feature. The thickness of the middle cell layer of the epidermis in B. dussumeri was significantly greater than in P. waltoni. Capillaries in the dorsal and ventral parts of the body are more closely distributed to the epidermal surface in P. waltoni than in B. dussumeri. The diffusion distance in the dorsal epidermis of P. waltoni was less than that in the ventral epidermis of B. dussumeri. A comparative examination of the skin of mudskipper species suggests that, due to the more terrestrial lifestyle adopted by P. waltoni, the skin contributes more to respiration.

两种两栖弹涂鱼皮肤的显微结构对Boleophthalmus dussumieri Valenciennes, 1837 (B. dussumeri)和pereophthalmus waltoni Koumans, 1941 (P. waltoni)的生活方式进行了调查。这两种动物皮肤的总体结构是相同的。灰杉的表皮明显厚于白杨。皮肤膨出只在白僵菌皮肤发育良好。华氏假体表皮无黏液细胞,而杜氏假体表皮有黏液细胞。dussumeri和P. waltoni都有发达肿胀的中间细胞作为共同的表皮特征。沙棘表皮中间细胞层厚度显著大于华氏棘。waltoni体背部和腹部的毛细血管比dussumeri体背部和腹部的毛细血管更接近表皮。白刺背表皮的扩散距离小于灰刺腹表皮的扩散距离。一项对弹涂鱼皮肤的比较研究表明,由于P. waltoni采用了更多的陆地生活方式,皮肤对呼吸的贡献更大。
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引用次数: 1
Analysis of composition and microstructure of diatom frustules in mud on the coast of Boryeong- city, South Korea 韩国保宁市海岸泥中硅藻体的组成和微观结构分析
Q3 Immunology and Microbiology Pub Date : 2022-12-15 DOI: 10.1186/s42649-022-00082-1
Mi Kyung Bok, Chung Hwa Chin, Hee Jung Choi, Ju Hyun Ham, Byung Soo Chang

The microstructure of diatom frustules found in mud sediments along the coast of Boryeong- city, South Korea, was observed using a scanning electron microscopy (SEM), and the constituent elements of diatoms were analyzed using energy-dispersive X-ray spectroscopy (EDS). Diatom frustules and clay minerals were present in the SEM images of the mud powder. High-magnification SEM images revealed that the surface of the frustules contained identically shaped circular pores, measuring 1 μm in diameter, arranged at regular intervals. This study revealed that the diatom shell fragments in the mud powder ranged in size from 3 to 30 μm, with an average thickness of approximately 2.5 μm. The elements Si, Al, Fe, K, Na, Mg, and Ti were detected while analyzing the frustule constituents, with Si being the primary component with the highest content.

用扫描电子显微镜(SEM)观察了韩国保宁市沿海泥质沉积物中硅藻的微观结构,并用能谱仪(EDS)分析了硅藻的组成元素。泥粉的SEM图像中存在硅藻体和粘土矿物。高倍扫描电镜(SEM)图像显示,结晶体表面含有直径为1 μm的圆形孔,孔的形状相同,孔的间距为1 μm。研究发现,泥粉中的硅藻壳碎片大小在3 ~ 30 μm之间,平均厚度约为2.5 μm。在分析结构成分时,检测到Si、Al、Fe、K、Na、Mg、Ti等元素,其中Si是含量最高的主要成分。
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引用次数: 0
Poxvirus under the eyes of electron microscope 电镜下痘病毒
Q3 Immunology and Microbiology Pub Date : 2022-11-14 DOI: 10.1186/s42649-022-00080-3
Jaekyung Hyun

Zoonotic poxvirus infections pose significant threat to human health as we have witnessed recent spread of monkeypox. Therefore, insights into molecular mechanism behind poxvirus replication cycle are needed for the development of efficient antiviral strategies. Virion assembly is one of the key steps that determine the fate of replicating poxviruses. However, in-depth understanding of poxvirus assembly is challenging due to the complex nature of multi-step morphogenesis and heterogeneous virion structures. Despite these challenges, decades of research have revealed virion morphologies at various maturation stages, critical protein components and interactions with host cell compartments. Transmission electron microscopy has been employed as an indispensable tool for the examination of virion morphology, and more recently for the structure determination of protein complexes. In this review, we describe some of the major findings in poxvirus morphogenesis and the contributions of continuously advancing electron microscopy techniques.

人畜共患痘病毒感染对人类健康构成重大威胁,因为我们最近目睹了猴痘的传播。因此,需要深入了解痘病毒复制周期背后的分子机制,以开发有效的抗病毒策略。病毒粒子组装是决定痘病毒复制命运的关键步骤之一。然而,由于多步骤形态发生的复杂性和病毒粒子结构的异质性,对痘病毒组装的深入理解是具有挑战性的。尽管存在这些挑战,数十年的研究已经揭示了病毒粒子在不同成熟阶段的形态、关键的蛋白质成分以及与宿主细胞隔室的相互作用。透射电子显微镜已被用作检查病毒粒子形态的不可或缺的工具,最近用于蛋白质复合物的结构测定。在这篇综述中,我们描述了痘病毒形态发生的一些主要发现以及不断发展的电子显微镜技术的贡献。
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引用次数: 3
Microstructural, mechanical, and electrochemical analysis of carbon doped AISI carbon steels 碳掺杂AISI碳钢的显微结构、力学和电化学分析
Q3 Immunology and Microbiology Pub Date : 2022-10-20 DOI: 10.1186/s42649-022-00079-w
Muhammad Ishtiaq, Aqil Inam, Saurabh Tiwari, Jae Bok Seol

The effect of carbon doping contents on the microstructure, hardness, and corrosion properties of heat-treated AISI steel grades of plain carbon steel was investigated in this study. Various microstructures including coarse ferrite-pearlite, fine ferrite-pearlite, martensite, and bainite were developed by different heat treatments i.e. annealing, normalizing, quenching, and austempering, respectively. The developed microstructures, micro-hardness, and corrosion properties were investigated by a light optical microscope, scanning electron microscope, electromechanical (Vickers Hardness tester), and electrochemical (Gamry Potentiostat) equipment, respectively. The highest corrosion rates were observed in bainitic microstructures (2.68–12.12 mpy), whereas the lowest were found in the fine ferritic-pearlitic microstructures (1.57–6.36 mpy). A direct correlation has been observed between carbon concentration and corrosion rate, i.e. carbon content resulted in an increase in corrosion rate (2.37 mpy for AISI 1020 to 9.67 mpy for AISI 1050 in annealed condition).

研究了碳掺杂含量对经热处理的普通碳钢AISI钢的显微组织、硬度和腐蚀性能的影响。通过退火、正火、淬火和等温回火处理,形成了粗铁素体-珠光体、细铁素体-珠光体、马氏体和贝氏体等多种显微组织。分别用光学显微镜、扫描电镜、机电(维氏硬度计)和电化学(Gamry恒电位器)对制备的材料的显微组织、显微硬度和腐蚀性能进行了研究。贝氏体组织的腐蚀速率最高(2.68 ~ 12.12 mpy),细铁素体-珠光体组织的腐蚀速率最低(1.57 ~ 6.36 mpy)。碳浓度与腐蚀速率直接相关,即碳含量导致腐蚀速率增加(在退火条件下,AISI 1020为2.37 mpy, AISI 1050为9.67 mpy)。
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引用次数: 0
Review on the structural understanding of the 10S myosin II in the era of Cryo-electron microscopy 低温电镜时代对10S肌球蛋白II的结构认识综述
Q3 Immunology and Microbiology Pub Date : 2022-10-11 DOI: 10.1186/s42649-022-00078-x
Anahita Vispi Bharda, Hyun Suk Jung

The compact smooth muscle 10S myosin II is a type of a monomer with folded tail and the heads bending back to interact with each other. This inactivated form is associated with regulatory and enzymatic activities affecting myosin processivity with actin filaments as well as ATPase activity. Phosphorylation by RLC can however, shuttle myosin from the inhibited 10S state to an activated 6S state, dictating the equilibrium. Multiple studies contributed by TEM have provided insights in the structural understanding of the 10S form. However, it is only recently that the true potential of Cryo-EM in deciphering the intramolecular interactions of 10S myosin state has been realized. This has led to an influx of new revelations on the 10S inactivation, unfolding mechanism and association in various diseases. This study reviews the gradual development in the structural interpretation of 10S species from TEM to Cryo-EM era. Furthermore, we discuss the utility of Cryo-EM in future myosin 10S studies and its contribution to human health.

紧凑型平滑肌10S肌球蛋白II是一种尾部折叠、头部向后弯曲以相互作用的单体。这种失活形式与影响肌动蛋白丝和atp酶活性的肌球蛋白加工的调节和酶活性有关。然而,RLC的磷酸化可以将肌凝蛋白从抑制的10S状态转移到激活的6S状态,从而决定平衡。TEM的多项研究提供了对10S结构理解的见解。然而,直到最近,Cryo-EM在破译10S肌球蛋白状态的分子内相互作用方面的真正潜力才被实现。这导致了关于10S失活、展开机制及其在各种疾病中的关联的大量新发现。本研究回顾了10S物种从TEM到Cryo-EM时代的结构解释的逐渐发展。此外,我们还讨论了冷冻电镜在未来肌球蛋白10S研究中的应用及其对人类健康的贡献。
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引用次数: 0
Histology and morphometry of the skin of the trident goby Tridentiger brevispinis (Perciformes, Gobiidae) 三叉戟虾虎鱼(虾虎鱼科,虾虎鱼目)皮肤的组织学和形态学研究
Q3 Immunology and Microbiology Pub Date : 2022-08-09 DOI: 10.1186/s42649-022-00077-y
Hyun-Tae Kim

The Korean trident goby, Tridentiger brevispinis, lives in adverse habitats that can easily become hypoxic due to low precipitation, regional dry periods, and high amounts of solar radiation. Histological and morphometric studies revealed the goby’s specialized skin (35.4–150.0 μm in thickness), consisting of an epidermis and dermis. The thicker epidermis comprises an outermost surface layer (having taste buds, stratified flattened cells, mucous cells, pigment cells, and stratified polygonal cells), middle layer (having stratified polygonal cells), and stratum germinativum (stratified columnar cells). In particular, the dermis has scales, well-developed vascularization, and a few blood capillaries just above the basement membrane, and a reduced diffusion distance was present in the lateral body. Consequently, adaptations such as thicker epidermis, well-developed vascularization, few blood capillaries, and a reduced diffusion distance may provide cutaneous respiration for survival in poorly oxygenated water during the periodic dry season.

韩国三叉戟虾虎鱼(Tridentiger brevispinis)生活在不利的栖息地,由于降水少、地区干旱期和大量的太阳辐射,这些栖息地很容易缺氧。组织学和形态学研究显示虾虎鱼的特殊皮肤(厚度为35.4-150.0 μm),由表皮和真皮层组成。较厚的表皮包括最外层(具有味蕾、分层扁平细胞、粘液细胞、色素细胞和分层多边形细胞)、中间层(具有分层多边形细胞)和生发层(分层柱状细胞)。特别是真皮有鳞片,血管发达,基膜上方有少量毛细血管,外侧体扩散距离缩短。因此,诸如较厚的表皮、发达的血管、较少的毛细血管和较短的扩散距离等适应可能为周期性干旱季节在缺氧水中的生存提供皮肤呼吸。
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引用次数: 2
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