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Teliospore mucilage of Puccinia miscanthi revealed through the axial imaging of secondary electrons 通过二次电子轴向成像揭示丝核菌的端孢子粘液
Q3 Immunology and Microbiology Pub Date : 2021-10-22 DOI: 10.1186/s42649-021-00064-9
Ki Woo Kim

Puccinia miscanthi teliospores were observed on the leaf surface of Miscanthus sinensis using a field emission scanning electron microscope. Details of teliospore mucilage could be visualized through the axial imaging of secondary electrons for a better understanding of pathogen behavior in rust diseases.

利用场发射扫描电子显微镜观察了中华鹅掌楸叶片表面的灰霉病端孢子。通过二次电子的轴向成像,可以观察到端孢子粘液的细节,从而更好地了解锈病的病原体行为。
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引用次数: 0
Melanin-based structural coloration of birds and its biomimetic applications 基于黑色素的鸟类结构着色及其生物仿生应用。
Q3 Immunology and Microbiology Pub Date : 2021-10-11 DOI: 10.1186/s42649-021-00063-w
Deok-Jin Jeon, Suejeong Paik, Seungmuk Ji, Jong-Souk Yeo

Melanin has been a widely researched pigment by scientists for decades as it is undoubtedly the most ubiquitous and ancient pigment found in nature. Melanin plays very significant roles in structural plumage colors in birds: it has visible light-absorbing capabilities, and nanoscale structures can be formed by self-assembling melanin granules. Herein, we review recent progress on melanin-based structural coloration research. We hope that this review will provide current understanding of melanin’s structural and optical properties, natural coloration mechanisms, and biomimetic methods to implement artificial melanin-based structural colors.

几十年来,黑色素一直是科学家们广泛研究的色素,因为它无疑是自然界中最普遍、最古老的色素。黑色素在鸟类羽色结构中扮演着非常重要的角色:它具有可见光吸收能力,并且可以通过黑色素颗粒的自组装形成纳米级结构。在此,我们将回顾基于黑色素的结构着色研究的最新进展。我们希望通过这篇综述,了解黑色素的结构和光学特性、自然着色机制以及实现基于黑色素的人工结构着色的生物仿生方法。
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引用次数: 0
Cryo-EM as a powerful tool for drug discovery: recent structural based studies of SARS-CoV-2 Cryo-EM作为药物发现的有力工具:最近基于SARS-CoV-2结构的研究。
Q3 Immunology and Microbiology Pub Date : 2021-09-25 DOI: 10.1186/s42649-021-00062-x
Han-ul Kim, Hyun Suk Jung

The novel coronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has arisen as a global pandemic affecting the respiratory system showing acute respiratory distress syndrome (ARDS). However, there is no targeted therapeutic agent yet and due to the growing cases of infections and the rising death tolls, discovery of the possible drug is the need of the hour. In general, the study for discovering therapeutic agent for SARS-CoV-2 is largely focused on large-scale screening with fragment-based drug discovery (FBDD). With the recent advancement in cryo-electron microscopy (Cryo-EM), it has become one of the widely used tools in structural biology. It is effective in investigating the structure of numerous proteins in high-resolution and also had an intense influence on drug discovery, determining the binding reaction and regulation of known drugs as well as leading the design and development of new drug candidates. Here, we review the application of cryo-EM in a structure-based drug design (SBDD) and in silico screening of the recently acquired FBDD in SARS-CoV-2. Such insights will help deliver better understanding in the procurement of the effective remedial solution for this pandemic.

新型冠状病毒、严重急性呼吸综合征冠状病毒2型(SARS-CoV-2)是一种影响呼吸系统的全球大流行,表现为急性呼吸窘迫综合征(ARDS)。然而,目前还没有靶向治疗剂,由于感染病例的增加和死亡人数的上升,发现可能的药物是当务之急。一般来说,发现严重急性呼吸系统综合征冠状病毒2型治疗剂的研究主要集中在基于片段的药物发现(FBDD)的大规模筛查上。随着冷冻电子显微镜(cryo-EM)的发展,它已成为结构生物学中广泛使用的工具之一。它在高分辨率研究许多蛋白质的结构方面是有效的,也对药物发现、确定已知药物的结合反应和调节以及领导新药候选药物的设计和开发产生了重大影响。在此,我们回顾了冷冻电镜在基于结构的药物设计(SBDD)和最近获得的严重急性呼吸系统综合征冠状病毒2型FBDD的计算机筛查中的应用。这些见解将有助于在采购针对这一流行病的有效补救解决方案时提供更好的理解。
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引用次数: 0
Multispectral intravital microscopy for simultaneous bright-field and fluorescence imaging of the microvasculature 多光谱活体内显微镜用于同时对微血管进行亮场和荧光成像。
Q3 Immunology and Microbiology Pub Date : 2021-07-24 DOI: 10.1186/s42649-021-00059-6
Barry G. H. Janssen, Mohamadreza Najiminaini, Yan Min Zhang, Parsa Omidi, Jeffrey J. L. Carson

Intravital video microscopy permits the observation of microcirculatory blood flow. This often requires fluorescent probes to visualize structures and dynamic processes that cannot be observed with conventional bright-field microscopy. Conventional light microscopes do not allow for simultaneous bright-field and fluorescent imaging. Moreover, in conventional microscopes, only one type of fluorescent label can be observed. This study introduces multispectral intravital video microscopy, which combines bright-field and fluorescence microscopy in a standard light microscope. The technique enables simultaneous real-time observation of fluorescently-labeled structures in relation to their direct physical surroundings. The advancement provides context for the orientation, movement, and function of labeled structures in the microcirculation.

内视显微镜可以观察微循环血流。这通常需要荧光探针来观察传统明场显微镜无法观察到的结构和动态过程。传统的光学显微镜无法同时进行明视野和荧光成像。此外,传统显微镜只能观察一种荧光标签。本研究介绍了多光谱动态视频显微镜,它在标准光学显微镜中结合了明视野和荧光显微镜。该技术可同时实时观察荧光标记结构与其周围直接物理环境的关系。这一进展为微循环中标记结构的方向、运动和功能提供了背景信息。
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引用次数: 0
Capture silk scaffold production in the cribellar web spider 捕丝脚手架生产在网蜘蛛
Q3 Immunology and Microbiology Pub Date : 2021-07-13 DOI: 10.1186/s42649-021-00061-y
Yan Sun, Seung-Min Lee, Bon-Jin Ku, Eun-Ah Park, Myung-Jin Moon

Spider capture silk is a natural scaffolding material that outperforms most synthetic materials in terms of its combination of strength and elasticity. Among the various kinds of silk threads, cribellar thread is the most primitive prey-capturing type of spider web material. We analyzed the functional organization of the sieve-like cribellum spigots and specialized calamistral comb bristles for capture thread production by the titanoecid spider Nurscia albofasciata. The outer cribellar surface is covered with thousands of tiny spigots, and the cribellar plate produces non-sticky threads composed of thousands of fine nanofibers. N. albofasciata cribellar spigots are typically about 10?μm long, and each spigot appears as a long individual shaft with a pagoda-like tiered tip. The five distinct segments comprising each spigot is a defining characteristic of this spider. This segmented and flexible structure not only allows for spigots to bend individually and join with adjacent spigots, but it also enables spigots to draw the silk fibrils from their cribella with rows of calamistral leg bristles to form cribellar prey-capture threads.

蜘蛛捕获丝是一种天然的脚手架材料,其强度和弹性的结合优于大多数合成材料。在各种丝线中,钩线是最原始的捕获猎物类型的蜘蛛网材料。本文分析了钛蛛生产捕丝所用的筛子状卷毛龙头和专门的灾状梳毛的功能组织。外网带表面覆盖着数千个微小的龙头,网带板产生由数千个精细纳米纤维组成的不粘线。白筋膜棘球绦虫的棘突通常约为10?每个插口看起来像一个长而独立的轴,有一个宝塔状的分层尖端。组成每个龙头的五个不同的部分是这种蜘蛛的一个定义特征。这种分段和灵活的结构不仅允许插口单独弯曲并与相邻的插口连接,而且还允许插口用成排的灾难腿刚毛从其cribella中抽出丝原纤维,形成cribella捕获猎物的线。
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引用次数: 2
Sensitivity of quantitative symmetry measurement algorithms for convergent beam electron diffraction technique 会聚束电子衍射技术中定量对称测量算法的灵敏度
Q3 Immunology and Microbiology Pub Date : 2021-07-03 DOI: 10.1186/s42649-021-00060-z
Hyeongsub So, Ro Woon Lee, Sung Taek Hong, Kyou-Hyun Kim

We investigate the sensitivity of symmetry quantification algorithms based on the profile R-factor (Rp) and the normalized cross-correlation (NCC) coefficient (γ). A DM (Digital Micrograph?) script embedded in the Gatan digital microscopy software is used to develop the symmetry quantification program. Using the Bloch method, a variety of CBED patterns are simulated and used to investigate the sensitivity of symmetry quantification algorithms. The quantification results show that two symmetry quantification coefficients are significantly sensitive to structural changes even for small strain values of <?1%.

我们研究了基于轮廓r因子(Rp)和归一化互相关(NCC)系数(γ)的对称量化算法的敏感性。利用Gatan数字显微镜软件中嵌入的DM (Digital Micrograph?)脚本编写对称量化程序。利用布洛赫方法,模拟了多种CBED模式,并用于研究对称量化算法的灵敏度。量化结果表明,即使应变值很小(<?1%),两个对称量化系数对结构变化也非常敏感。
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引用次数: 2
A brief review of non-invasive brain imaging technologies and the near-infrared optical bioimaging 无创脑成像技术与近红外光学生物成像技术综述
Q3 Immunology and Microbiology Pub Date : 2021-06-25 DOI: 10.1186/s42649-021-00058-7
Beomsue Kim, Hongmin Kim, Songhui Kim, Young-ran Hwang

Brain disorders seriously affect life quality. Therefore, non-invasive neuroimaging has received attention to monitoring and early diagnosing neural disorders to prevent their progress to a severe level. This short review briefly describes the current MRI and PET/CT techniques developed for non-invasive neuroimaging and the future direction of optical imaging techniques to achieve higher resolution and specificity using the second near-infrared (NIR-II) region of wavelength with organic molecules.

脑部疾病严重影响生活质量。因此,无创神经影像学监测和早期诊断神经系统疾病以防止其发展到严重程度已受到重视。本文简要介绍了目前用于非侵入性神经成像的MRI和PET/CT技术,以及光学成像技术的未来发展方向,即利用第二近红外(NIR-II)波长区域与有机分子实现更高的分辨率和特异性。
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引用次数: 15
TEM sample preparation using micro-manipulator for in-situ MEMS experiment 利用微机械臂制备TEM样品进行原位MEMS实验
Q3 Immunology and Microbiology Pub Date : 2021-06-09 DOI: 10.1186/s42649-021-00057-8
Hyunjong Lee, Odongo Francis Ngome Okello, Gi-Yeop Kim, Kyung Song, Si-Young Choi

Growing demands for comprehending complicated nano-scale phenomena in atomic resolution has attracted in-situ transmission electron microscopy (TEM) techniques for understanding their dynamics. However, simple to safe TEM sample preparation for in-situ observation has been limited. Here, we suggested the optical microscopy based micro-manipulating system for transferring TEM samples. By adopting our manipulator system, several types of samples from nano-wires to plate-like thin samples were transferred on micro-electro mechanical systems (MEMS) chip in a single step. Furthermore, the control of electrostatic force between the sample and the probe tip is found to be a key role in transferring process.

在原子分辨率上理解复杂的纳米尺度现象的需求日益增长,这吸引了原位透射电子显微镜(TEM)技术来了解它们的动力学。然而,用于原位观察的简单到安全的TEM样品制备受到了限制。在此,我们提出了一种基于光学显微镜的微操作系统来转移TEM样品。采用该机械手系统,可在微机电系统(MEMS)芯片上一步完成从纳米线到片状薄样的多种类型样品的转移。此外,样品和探针尖之间的静电力控制是传递过程的关键。
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引用次数: 2
Advanced atomic force microscopy-based techniques for nanoscale characterization of switching devices for emerging neuromorphic applications 基于先进原子力显微镜的纳米级开关器件表征技术,用于新兴的神经形态应用
Q3 Immunology and Microbiology Pub Date : 2021-05-26 DOI: 10.1186/s42649-021-00056-9
Young-Min Kim, Jihye Lee, Deok-Jin Jeon, Si-Eun Oh, Jong-Souk Yeo

Neuromorphic systems require integrated structures with high-density memory and selector devices to avoid interference and recognition errors between neighboring memory cells. To improve the performance of a selector device, it is important to understand the characteristics of the switching process. As changes by switching cycle occur at local nanoscale areas, a high-resolution analysis method is needed to investigate this phenomenon. Atomic force microscopy (AFM) is used to analyze the local changes because it offers nanoscale detection with high-resolution capabilities. This review introduces various types of AFM such as conductive AFM (C-AFM), electrostatic force microscopy (EFM), and Kelvin probe force microscopy (KPFM) to study switching behaviors.

神经形态系统需要具有高密度存储器和选择装置的集成结构,以避免相邻记忆细胞之间的干扰和识别错误。为了提高选择器器件的性能,了解开关过程的特性是很重要的。由于开关周期的变化发生在局部纳米尺度区域,因此需要一种高分辨率的分析方法来研究这种现象。原子力显微镜(AFM)被用于分析局部变化,因为它提供了具有高分辨率的纳米级检测能力。本文介绍了各种类型的原子力显微镜,如导电原子力显微镜(C-AFM)、静电力显微镜(EFM)和开尔文探针力显微镜(KPFM)来研究开关行为。
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引用次数: 6
Fractal dimension analysis as an easy computational approach to improve breast cancer histopathological diagnosis 分形维数分析作为一种简便的计算方法来提高乳腺癌的组织病理学诊断
Q3 Immunology and Microbiology Pub Date : 2021-04-30 DOI: 10.1186/s42649-021-00055-w
Lucas Glaucio da Silva, Waleska Rayanne Sizinia da Silva Monteiro, Tiago Medeiros de Aguiar Moreira, Maria Aparecida Esteves Rabelo, Emílio Augusto Campos Pereira de Assis, Gustavo Torres de Souza

Histopathology is a well-established standard diagnosis employed for the majority of malignancies, including breast cancer. Nevertheless, despite training and standardization, it is considered operator-dependent and errors are still a concern. Fractal dimension analysis is a computational image processing technique that allows assessing the degree of complexity in patterns. We aimed here at providing a robust and easily attainable method for introducing computer-assisted techniques to histopathology laboratories. Slides from two databases were used: A) Breast Cancer Histopathological; and B) Grand Challenge on Breast Cancer Histology. Set A contained 2480 images from 24 patients with benign alterations, and 5429 images from 58 patients with breast cancer. Set B comprised 100 images of each type: normal tissue, benign alterations, in situ carcinoma, and invasive carcinoma. All images were analyzed with the FracLac algorithm in the ImageJ computational environment to yield the box count fractal dimension (Db) results. Images on set A on 40x magnification were statistically different (p?=?0.0003), whereas images on 400x did not present differences in their means. On set B, the mean Db values presented promissing statistical differences when comparing. Normal and/or benign images to in situ and/or invasive carcinoma (all p?<?0.0001). Interestingly, there was no difference when comparing normal tissue to benign alterations. These data corroborate with previous work in which fractal analysis allowed differentiating malignancies. Computer-aided diagnosis algorithms may beneficiate from using Db data; specific Db cut-off values may yield ~?99% specificity in diagnosing breast cancer. Furthermore, the fact that it allows assessing tissue complexity, this tool may be used to understand the progression of the histological alterations in cancer.

组织病理学是一个公认的标准诊断用于大多数恶性肿瘤,包括乳腺癌。然而,尽管进行了培训和标准化,它仍然被认为是依赖于操作人员的,错误仍然是一个问题。分形维数分析是一种计算图像处理技术,可以评估图案的复杂程度。我们的目的是提供一个强大的和容易实现的方法,介绍计算机辅助技术到组织病理学实验室。使用了来自两个数据库的幻灯片:A)乳腺癌组织病理学;B)乳腺癌组织学大挑战。A组包含24例良性病变患者的2480张图像,以及58例乳腺癌患者的5429张图像。B组包括100张不同类型的图像:正常组织、良性改变、原位癌和浸润性癌。在ImageJ计算环境中使用FracLac算法对所有图像进行分析,得出盒数分形维数(Db)结果。集合A在40倍放大率下的图像具有统计学差异(p = 0.0003),而在400倍放大率下的图像在其平均值上没有差异。在集合B上,在比较时,平均Db值呈现出有希望的统计差异。原位癌和/或浸润性癌的正常和/或良性影像学差异(p < 0.01)。有趣的是,当比较正常组织和良性改变时,没有差异。这些数据证实了先前的工作,分形分析可以区分恶性肿瘤。计算机辅助诊断算法可能受益于使用数据库数据;特定Db临界值可能产生~?诊断乳腺癌的特异性为99%此外,事实上,它允许评估组织的复杂性,这个工具可以用来了解癌症的组织学改变的进展。
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引用次数: 8
期刊
Applied Microscopy
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