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Space and Time Resolved Detection of Platelet Activation and von Willebrand Factor Conformational Changes in Deep Suspensions. 深悬液中血小板活化和血管性血友病因子构象变化的时空分辨检测。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2017-01-01 Epub Date: 2017-11-06 DOI: 10.1155/2017/8318906
Jacopo Biasetti, Kaushik Sampath, Angel Cortez, Alaleh Azhir, Assaf A Gilad, Thomas S Kickler, Tobias Obser, Zaverio M Ruggeri, Joseph Katz

Tracking cells and proteins' phenotypic changes in deep suspensions is critical for the direct imaging of blood-related phenomena in in vitro replica of cardiovascular systems and blood-handling devices. This paper introduces fluorescence imaging techniques for space and time resolved detection of platelet activation, von Willebrand factor (VWF) conformational changes, and VWF-platelet interaction in deep suspensions. Labeled VWF, platelets, and VWF-platelet strands are suspended in deep cuvettes, illuminated, and imaged with a high-sensitivity EM-CCD camera, allowing detection using an exposure time of 1 ms. In-house postprocessing algorithms identify and track the moving signals. Recombinant VWF-eGFP (rVWF-eGFP) and VWF labeled with an FITC-conjugated polyclonal antibody are employed. Anti-P-Selectin FITC-conjugated antibodies and the calcium-sensitive probe Indo-1 are used to detect activated platelets. A positive correlation between the mean number of platelets detected per image and the percentage of activated platelets determined through flow cytometry is obtained, validating the technique. An increase in the number of rVWF-eGFP signals upon exposure to shear stress demonstrates the technique's ability to detect breakup of self-aggregates. VWF globular and unfolded conformations and self-aggregation are also observed. The ability to track the size and shape of VWF-platelet strands in space and time provides means to detect pro- and antithrombotic processes.

在深度悬浮液中追踪细胞和蛋白质的表型变化对于在体外复制心血管系统和血液处理装置中直接成像血液相关现象至关重要。本文介绍了用于深度悬浮液中血小板活化、血管性血血病因子(VWF)构象变化和VWF-血小板相互作用的时空分辨荧光成像技术。标记的VWF、血小板和VWF-血小板链悬浮在深比皿中,照明,并用高灵敏度EM-CCD相机成像,曝光时间为1ms。内部后处理算法识别和跟踪移动信号。采用重组VWF- egfp (rVWF-eGFP)和fitc偶联多克隆抗体标记的VWF。使用抗p -选择素fitc偶联抗体和钙敏感探针Indo-1检测活化血小板。每张图像检测到的平均血小板数量与通过流式细胞术确定的活化血小板百分比呈正相关,验证了该技术。暴露于剪切应力下rVWF-eGFP信号数量的增加证明了该技术检测自聚集体破裂的能力。还观察到VWF的球状和未展开构象和自聚集。在空间和时间上跟踪vwf -血小板链的大小和形状的能力为检测促血栓和抗血栓过程提供了手段。
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引用次数: 3
Phase Segmentation Methods for an Automatic Surgical Workflow Analysis. 手术流程自动分析的相位分割方法。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2017-01-01 Epub Date: 2017-03-19 DOI: 10.1155/2017/1985796
Dinh Tuan Tran, Ryuhei Sakurai, Hirotake Yamazoe, Joo-Ho Lee
In this paper, we present robust methods for automatically segmenting phases in a specified surgical workflow by using latent Dirichlet allocation (LDA) and hidden Markov model (HMM) approaches. More specifically, our goal is to output an appropriate phase label for each given time point of a surgical workflow in an operating room. The fundamental idea behind our work lies in constructing an HMM based on observed values obtained via an LDA topic model covering optical flow motion features of general working contexts, including medical staff, equipment, and materials. We have an awareness of such working contexts by using multiple synchronized cameras to capture the surgical workflow. Further, we validate the robustness of our methods by conducting experiments involving up to 12 phases of surgical workflows with the average length of each surgical workflow being 12.8 minutes. The maximum average accuracy achieved after applying leave-one-out cross-validation was 84.4%, which we found to be a very promising result.
在本文中,我们提出了一种鲁棒的方法来自动分割阶段在一个特定的外科工作流程中使用潜在的狄利克雷分配(LDA)和隐马尔可夫模型(HMM)的方法。更具体地说,我们的目标是为手术室中手术工作流程的每个给定时间点输出适当的阶段标签。我们工作背后的基本思想是基于LDA主题模型获得的观测值构建HMM,该模型涵盖了一般工作环境(包括医务人员、设备和材料)的光流运动特征。我们通过使用多个同步摄像机来捕捉手术工作流程来了解这种工作环境。此外,我们通过进行涉及多达12个阶段的手术工作流程的实验来验证我们方法的稳健性,每个手术工作流程的平均长度为12.8分钟。采用留一交叉验证后的最大平均准确率为84.4%,这是一个非常有希望的结果。
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引用次数: 21
Image Retrieval Method for Multiscale Objects from Optical Colonoscopy Images. 光学结肠镜图像中多尺度目标的图像检索方法。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2017-01-01 Epub Date: 2017-02-01 DOI: 10.1155/2017/7089213
Hirokazu Nosato, Hidenori Sakanashi, Eiichi Takahashi, Masahiro Murakawa, Hiroshi Aoki, Ken Takeuchi, Yasuo Suzuki

Optical colonoscopy is the most common approach to diagnosing bowel diseases through direct colon and rectum inspections. Periodic optical colonoscopy examinations are particularly important for detecting cancers at early stages while still treatable. However, diagnostic accuracy is highly dependent on both the experience and knowledge of the medical doctor. Moreover, it is extremely difficult, even for specialist doctors, to detect the early stages of cancer when obscured by inflammations of the colonic mucosa due to intractable inflammatory bowel diseases, such as ulcerative colitis. Thus, to assist the UC diagnosis, it is necessary to develop a new technology that can retrieve similar cases of diagnostic target image from cases in the past that stored the diagnosed images with various symptoms of colonic mucosa. In order to assist diagnoses with optical colonoscopy, this paper proposes a retrieval method for colonoscopy images that can cope with multiscale objects. The proposed method can retrieve similar colonoscopy images despite varying visible sizes of the target objects. Through three experiments conducted with real clinical colonoscopy images, we demonstrate that the method is able to retrieve objects of any visible size and any location at a high level of accuracy.

通过直接检查结肠和直肠,光学结肠镜检查是诊断肠道疾病最常见的方法。定期的光学结肠镜检查对于在早期发现仍可治疗的癌症尤其重要。然而,诊断的准确性高度依赖于医生的经验和知识。此外,由于顽固性炎症性肠病(如溃疡性结肠炎)引起的结肠黏膜炎症掩盖了癌症的早期阶段,即使是专科医生也很难发现癌症。因此,为了辅助UC的诊断,有必要开发一种新的技术,可以从过去存储有各种结肠粘膜症状的诊断图像的病例中检索出诊断目标图像相似的病例。为了辅助光学结肠镜诊断,提出了一种能够处理多尺度物体的结肠镜图像检索方法。提出的方法可以检索相似的结肠镜图像,尽管目标物体的可见大小不同。通过对真实的临床结肠镜图像进行的三个实验,我们证明了该方法能够以较高的精度检索任何可见大小和任何位置的物体。
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引用次数: 3
Multitemporal Volume Registration for the Analysis of Rheumatoid Arthritis Evolution in the Wrist. 用于分析腕部类风湿性关节炎演变的多时空容积登记。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2017-01-01 Epub Date: 2017-10-19 DOI: 10.1155/2017/7232751
Roberta Ferretti, Silvana G Dellepiane

This paper describes a method based on an automatic segmentation process to coregister carpal bones of the same patient imaged at different time points. A rigid registration was chosen to avoid artificial bone deformations and to allow finding eventual differences in the bone shape due to erosion, disease regression, or other eventual pathological signs. The actual registration step is performed on the basis of principal inertial axes of each carpal bone volume, as estimated from the inertia matrix. In contrast to already published approaches, the proposed method suggests splitting the 3D rotation into successive rotations about one axis at a time (the so-called basic or elemental rotations). In such a way, singularity and ambiguity drawbacks affecting other classical methods, for instance, the Euler angles method, are addressed. The proposed method was quantitatively evaluated using a set of real magnetic resonance imaging (MRI) sequences acquired at two different times from healthy wrists and by choosing a direct volumetric comparison as a cost function. Both the segmentation and registration steps are not based on a priori models, and they are therefore able to obtain good results even in pathological cases, as proven by the visual evaluation of actual pathological cases.

本文介绍了一种基于自动分割过程的方法,用于对同一患者在不同时间点拍摄的腕骨进行核心配准。选择刚性配准是为了避免人为的骨骼变形,并发现由于侵蚀、疾病消退或其他最终病理迹象而导致的骨骼形状差异。实际的配准步骤是根据惯性矩阵估算出的每个腕骨体积的主惯性轴进行的。与已发表的方法不同,所提出的方法建议将三维旋转拆分为每次围绕一个轴的连续旋转(即所谓的基本旋转或元素旋转)。这样一来,影响其他经典方法(如欧拉角法)的奇异性和模糊性弊端就得到了解决。使用一组在两个不同时间从健康手腕获取的真实磁共振成像(MRI)序列,并选择直接体积比较作为成本函数,对所提出的方法进行了定量评估。分割和配准步骤均不基于先验模型,因此即使在病理情况下也能获得良好的结果,这一点已通过对实际病理病例的直观评估得到证明。
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引用次数: 0
Fast Compressed Sensing MRI Based on Complex Double-Density Dual-Tree Discrete Wavelet Transform. 基于复双密度双树离散小波变换的快速压缩感知MRI。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2017-01-01 Epub Date: 2017-04-09 DOI: 10.1155/2017/9604178
Shanshan Chen, Bensheng Qiu, Feng Zhao, Chao Li, Hongwei Du

Compressed sensing (CS) has been applied to accelerate magnetic resonance imaging (MRI) for many years. Due to the lack of translation invariance of the wavelet basis, undersampled MRI reconstruction based on discrete wavelet transform may result in serious artifacts. In this paper, we propose a CS-based reconstruction scheme, which combines complex double-density dual-tree discrete wavelet transform (CDDDT-DWT) with fast iterative shrinkage/soft thresholding algorithm (FISTA) to efficiently reduce such visual artifacts. The CDDDT-DWT has the characteristics of shift invariance, high degree, and a good directional selectivity. In addition, FISTA has an excellent convergence rate, and the design of FISTA is simple. Compared with conventional CS-based reconstruction methods, the experimental results demonstrate that this novel approach achieves higher peak signal-to-noise ratio (PSNR), larger signal-to-noise ratio (SNR), better structural similarity index (SSIM), and lower relative error.

压缩感知(CS)在磁共振成像(MRI)中的应用已有多年。由于小波基缺乏平移不变性,基于离散小波变换的欠采样MRI重建可能会产生严重的伪影。在本文中,我们提出了一种基于cs的重建方案,该方案将复杂双密度双树离散小波变换(CDDDT-DWT)与快速迭代收缩/软阈值算法(FISTA)相结合,以有效地减少这些视觉伪影。CDDDT-DWT具有移位不变性、高度和良好的方向选择性等特点。此外,FISTA具有优异的收敛速度,并且设计简单。实验结果表明,与传统的基于cs的重构方法相比,该方法具有更高的峰值信噪比(PSNR)、更高的信噪比(SNR)、更好的结构相似指数(SSIM)和更小的相对误差。
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引用次数: 3
Incorporating Colour Information for Computer-Aided Diagnosis of Melanoma from Dermoscopy Images: A Retrospective Survey and Critical Analysis 结合皮肤镜图像中黑色素瘤计算机辅助诊断的颜色信息:回顾性调查和批判性分析
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2016-12-01 DOI: 10.1155/2016/4868305
Ali Madooei, M. S. Drew
Cutaneous melanoma is the most life-threatening form of skin cancer. Although advanced melanoma is often considered as incurable, if detected and excised early, the prognosis is promising. Today, clinicians use computer vision in an increasing number of applications to aid early detection of melanoma through dermatological image analysis (dermoscopy images, in particular). Colour assessment is essential for the clinical diagnosis of skin cancers. Due to this diagnostic importance, many studies have either focused on or employed colour features as a constituent part of their skin lesion analysis systems. These studies range from using low-level colour features, such as simple statistical measures of colours occurring in the lesion, to availing themselves of high-level semantic features such as the presence of blue-white veil, globules, or colour variegation in the lesion. This paper provides a retrospective survey and critical analysis of contributions in this research direction.
皮肤黑色素瘤是最危及生命的皮肤癌。虽然晚期黑色素瘤通常被认为是无法治愈的,但如果及早发现并切除,预后是有希望的。今天,临床医生在越来越多的应用中使用计算机视觉,通过皮肤图像分析(特别是皮肤镜图像)来帮助早期发现黑色素瘤。肤色评估对皮肤癌的临床诊断至关重要。由于这种诊断的重要性,许多研究要么关注或使用颜色特征作为其皮肤病变分析系统的组成部分。这些研究的范围从使用低级的颜色特征,如病变中发生的颜色的简单统计测量,到利用自己的高级语义特征,如病变中存在的蓝白色面纱、球体或颜色变化。本文对这一研究方向的贡献进行了回顾性调查和批判性分析。
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引用次数: 23
The Capabilities and Limitations of Clinical Magnetic Resonance Imaging for Detecting Kidney Stones: A Retrospective Study 临床磁共振成像检测肾结石的能力和局限性:一项回顾性研究
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2016-11-01 DOI: 10.1155/2016/4935656
El-Sayed H. Ibrahim, Joseph G. Cernigliaro, M. Bridges, R. Pooley, W. Haley
The purpose of this work was to investigate the performance of currently available magnetic resonance imaging (MRI) for detecting kidney stones, compared to computed tomography (CT) results, and to determine the characteristics of successfully detected stones. Patients who had undergone both abdominal/pelvic CT and MRI exams within 30 days were studied. The images were reviewed by two expert radiologists blinded to the patients' respective radiological diagnoses. The study consisted of four steps: (1) reviewing the MRI images and determining whether any kidney stone(s) are identified; (2) reviewing the corresponding CT images and confirming whether kidney stones are identified; (3) reviewing the MRI images a second time, armed with the information from the corresponding CT, noting whether any kidney stones are positively identified that were previously missed; (4) for all stones MRI-confirmed on previous steps, the radiologist experts being asked to answer whether in retrospect, with knowledge of size and location on corresponding CT, these stones would be affirmed as confidently identified on MRI or not. In this best-case scenario involving knowledge of stones and their locations on concurrent CT, radiologist experts detected 19% of kidney stones on MRI, with stone size being a major factor for stone identification.
这项工作的目的是研究目前可用的磁共振成像(MRI)检测肾结石的性能,与计算机断层扫描(CT)结果进行比较,并确定成功检测到的结石的特征。研究对象为在30天内同时进行腹部/骨盆CT和MRI检查的患者。图像由两名不知道患者各自放射诊断的放射专家审查。该研究包括四个步骤:(1)检查MRI图像并确定是否发现肾结石;(2)复查相应的CT图像,确认是否发现肾结石;(3)根据相应的CT信息,再次检查MRI图像,注意是否有先前遗漏的肾结石被确诊;(4)对于在前面步骤中MRI确认的所有结石,请放射科专家回答,在回顾时,根据相应CT上的大小和位置,这些结石是否可以在MRI上被肯定地识别出来。在这个最好的情况下,包括在CT上了解结石及其位置,放射科专家在MRI上检测到19%的肾结石,结石大小是结石识别的主要因素。
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引用次数: 6
An Analytical Approach for Fast Recovery of the LSI Properties in Magnetic Particle Imaging 磁颗粒成像中快速恢复LSI性能的分析方法
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2016-10-01 DOI: 10.1155/2016/6120713
H. Jabbari, Jungwon Yoon
Linearity and shift invariance (LSI) characteristics of magnetic particle imaging (MPI) are important properties for quantitative medical diagnosis applications. The MPI image equations have been theoretically shown to exhibit LSI; however, in practice, the necessary filtering action removes the first harmonic information, which destroys the LSI characteristics. This lost information can be constant in the x-space reconstruction method. Available recovery algorithms, which are based on signal matching of multiple partial field of views (pFOVs), require much processing time and a priori information at the start of imaging. In this paper, a fast analytical recovery algorithm is proposed to restore the LSI properties of the x-space MPI images, representable as an image of discrete concentrations of magnetic material. The method utilizes the one-dimensional (1D) x-space imaging kernel and properties of the image and lost image equations. The approach does not require overlapping of pFOVs, and its complexity depends only on a small-sized system of linear equations; therefore, it can reduce the processing time. Moreover, the algorithm only needs a priori information which can be obtained at one imaging process. Considering different particle distributions, several simulations are conducted, and results of 1D and 2D imaging demonstrate the effectiveness of the proposed approach.
磁颗粒成像(MPI)的线性和平移不变性(LSI)特性是定量医学诊断应用的重要特性。MPI图像方程已经从理论上证明了LSI的存在;然而,在实践中,必要的滤波动作去除了第一谐波信息,这破坏了LSI的特性。这种丢失的信息在x空间重建方法中可以是常数。现有的恢复算法是基于多个部分视场(pfov)的信号匹配,需要大量的处理时间和成像开始时的先验信息。本文提出了一种快速解析恢复算法,用于恢复x空间MPI图像的LSI特性,该图像可表示为磁性材料离散浓度的图像。该方法利用一维(1D) x空间成像核以及图像和丢失图像方程的性质。该方法不需要pfov的重叠,其复杂性仅取决于一个小尺寸的线性方程组;因此,可以减少处理时间。此外,该算法只需要一次成像即可获得的先验信息。在不同颗粒分布的情况下,进行了多次模拟,一维和二维成像结果验证了该方法的有效性。
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引用次数: 6
Anatomy-Correlated Breast Imaging and Visual Grading Analysis Using Quantitative Transmission Ultrasound™ 解剖相关乳房成像和视觉分级分析使用定量透射超声™
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2016-09-01 DOI: 10.1155/2016/7570406
J. Klock, E. Iuanow, Bilal H. Malik, N. Obuchowski, J. Wiskin, M. Lenox
Objectives. This study presents correlations between cross-sectional anatomy of human female breasts and Quantitative Transmission (QT) Ultrasound, does discriminate classifier analysis to validate the speed of sound correlations, and does a visual grading analysis comparing QT Ultrasound with mammography. Materials and Methods. Human cadaver breasts were imaged using QT Ultrasound, sectioned, and photographed. Biopsies confirmed microanatomy and areas were correlated with QT Ultrasound images. Measurements were taken in live subjects from QT Ultrasound images and values of speed of sound for each identified anatomical structure were plotted. Finally, a visual grading analysis was performed on images to determine whether radiologists' confidence in identifying breast structures with mammography (XRM) is comparable to QT Ultrasound. Results. QT Ultrasound identified all major anatomical features of the breast, and speed of sound calculations showed specific values for different breast tissues. Using linear discriminant analysis overall accuracy is 91.4%. Using visual grading analysis readers scored the image quality on QT Ultrasound as better than on XRM in 69%–90% of breasts for specific tissues. Conclusions. QT Ultrasound provides accurate anatomic information and high tissue specificity using speed of sound information. Quantitative Transmission Ultrasound can distinguish different types of breast tissue with high resolution and accuracy.
目标。本研究提出了人类女性乳房横断面解剖与定量透射(QT)超声之间的相关性,进行了判别分类器分析以验证声速相关性,并对QT超声与乳房x线摄影进行了视觉分级分析。材料与方法。用QT超声对尸体乳房进行成像、切片和拍照。活检证实显微解剖和区域与QT超声图像相关。通过QT超声图像对活体受试者进行测量,并绘制出每个确定解剖结构的声速值。最后,对图像进行视觉分级分析,以确定放射科医生用乳房x光检查(XRM)识别乳房结构的信心是否与QT超声相当。结果。QT超声识别了乳房的所有主要解剖特征,声速计算显示了不同乳房组织的特定值。采用线性判别分析,总体准确率为91.4%。使用视觉分级分析,读者在69%-90%的乳房特定组织中对QT超声的图像质量评分优于XRM。结论。QT超声提供准确的解剖信息和高组织特异性利用声音信息的速度。定量透射超声可以区分不同类型的乳腺组织,具有较高的分辨率和准确性。
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引用次数: 14
Retinal Fundus Image Enhancement Using the Normalized Convolution and Noise Removing 基于归一化卷积和去噪的视网膜眼底图像增强
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2016-09-01 DOI: 10.1155/2016/5075612
Peishan Dai, Hanwei Sheng, Jianmei Zhang, Ling Li, Jing Wu, Min Fan
Retinal fundus image plays an important role in the diagnosis of retinal related diseases. The detailed information of the retinal fundus image such as small vessels, microaneurysms, and exudates may be in low contrast, and retinal image enhancement usually gives help to analyze diseases related to retinal fundus image. Current image enhancement methods may lead to artificial boundaries, abrupt changes in color levels, and the loss of image detail. In order to avoid these side effects, a new retinal fundus image enhancement method is proposed. First, the original retinal fundus image was processed by the normalized convolution algorithm with a domain transform to obtain an image with the basic information of the background. Then, the image with the basic information of the background was fused with the original retinal fundus image to obtain an enhanced fundus image. Lastly, the fused image was denoised by a two-stage denoising method including the fourth order PDEs and the relaxed median filter. The retinal image databases, including the DRIVE database, the STARE database, and the DIARETDB1 database, were used to evaluate image enhancement effects. The results show that the method can enhance the retinal fundus image prominently. And, different from some other fundus image enhancement methods, the proposed method can directly enhance color images.
视网膜眼底图像在视网膜相关疾病的诊断中具有重要作用。视网膜眼底图像的细节信息如小血管、微动脉瘤、渗出物等可能对比度较低,视网膜图像增强通常有助于分析与视网膜眼底图像相关的疾病。目前的图像增强方法可能会导致人工边界、颜色水平的突变和图像细节的丢失。为了避免这些副作用,提出了一种新的视网膜眼底图像增强方法。首先,对原始视网膜眼底图像进行归一化卷积和域变换处理,得到具有背景基本信息的图像;然后,将具有背景基本信息的图像与原始视网膜眼底图像融合,得到增强的眼底图像。最后,采用四阶偏微分方程和松弛中值滤波两阶段去噪方法对融合后的图像进行去噪。视网膜图像数据库包括DRIVE数据库、STARE数据库和DIARETDB1数据库,用于评估图像增强效果。结果表明,该方法能显著增强视网膜眼底图像。与其他眼底图像增强方法不同的是,该方法可以直接增强彩色图像。
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引用次数: 54
期刊
International Journal of Biomedical Imaging
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