Pub Date : 2024-11-30DOI: 10.1186/s43088-024-00582-x
Ahmed Said, Amira S. AbdElkhalek, Mariam Sherief, Lydia Amir, Maysem Samy, Mariam S. Nabil, Gehan Safwat, Ayman A. Diab, Karima Nasraldin
Background
The active metabolite of vitamin A (retinol) is retinoic acid (RA). RA is essential for developing several organs as a signaling molecule that is tightly regulated during embryogenesis. We explored the teratogenic effects of RA on forebrain and spinal cord development modified by cyclin-dependent kinase inhibitor 1B (CDKN1B), as the mechanism underlying RA's teratogenic impacts requires further investigation. The study involved four groups of pregnant mice: the negative control group, the positive control group treated with dimethyl sulfoxide (DMSO) diluted in sunflower oil, the RA-treated group receiving a low dosage (5 mg/kg), and the RA-treated group receiving a high dosage (10 mg/kg). The treatment groups received daily intraperitoneal RA dissolved in DMSO and diluted with sunflower oil on gestational days 10.5, 11.5, and 12.5. On day 13.5 of pregnancy, the pregnant mice were euthanized by cervical dislocation, and immunohistochemical analyses of brain and spinal cord tissues were performed.
Results
Morphologically, we observed a decrease in the number of implantation sites and the presence of hematomas in several uterus areas in the high-dose RA (10 mg/kg) group. Additionally, RA was shown to cause adverse changes in uterine weight and length. RA treatment indicated elevated levels of CDKN1B expression in spinal cord development, the diencephalon, and the telencephalon.
Conclusion
Our findings demonstrated that by activating CDKN1B as an RA target gene for cell cycle arrest, an excess of RA during brain development in mouse embryos can induce cell undifferentiation during development.
{"title":"Retinoic acid inhibition of cell proliferation via activation of CDKN1B signaling in the forebrain and spinal cord during mouse embryonic development","authors":"Ahmed Said, Amira S. AbdElkhalek, Mariam Sherief, Lydia Amir, Maysem Samy, Mariam S. Nabil, Gehan Safwat, Ayman A. Diab, Karima Nasraldin","doi":"10.1186/s43088-024-00582-x","DOIUrl":"10.1186/s43088-024-00582-x","url":null,"abstract":"<div><h3>Background</h3><p>The active metabolite of vitamin A (retinol) is retinoic acid (RA). RA is essential for developing several organs as a signaling molecule that is tightly regulated during embryogenesis. We explored the teratogenic effects of RA on forebrain and spinal cord development modified by cyclin-dependent kinase inhibitor 1B (<i>CDKN1B</i>), as the mechanism underlying RA's teratogenic impacts requires further investigation. The study involved four groups of pregnant mice: the negative control group, the positive control group treated with dimethyl sulfoxide (DMSO) diluted in sunflower oil, the RA-treated group receiving a low dosage (5 mg/kg), and the RA-treated group receiving a high dosage (10 mg/kg). The treatment groups received daily intraperitoneal RA dissolved in DMSO and diluted with sunflower oil on gestational days 10.5, 11.5, and 12.5. On day 13.5 of pregnancy, the pregnant mice were euthanized by cervical dislocation, and immunohistochemical analyses of brain and spinal cord tissues were performed.</p><h3>Results</h3><p>Morphologically, we observed a decrease in the number of implantation sites and the presence of hematomas in several uterus areas in the high-dose RA (10 mg/kg) group. Additionally, RA was shown to cause adverse changes in uterine weight and length. RA treatment indicated elevated levels of <i>CDKN1B</i> expression in spinal cord development, the diencephalon, and the telencephalon.</p><h3>Conclusion</h3><p>Our findings demonstrated that by activating <i>CDKN1B</i> as an RA target gene for cell cycle arrest, an excess of RA during brain development in mouse embryos can induce cell undifferentiation during development.</p></div>","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00582-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142753936","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-29DOI: 10.1186/s43088-024-00572-z
Mona M. Ismail, Ahmed A. Farghali, Ahmed G. El-Deen
Background
Cobalt oxide (Co3O4) is a promising electrocatalyst for efficient urea electro-oxidation, tackling power consumption and environmental challenges. The controllable design of free-standing Co3O4 nanostructures grown on Ni foam (NF) substrates was achieved using a green and facile hydrothermal approach. Different reducing agents were applied to synthesize various morphological structures of Co3O4, including nanoparticles, nanowires, and nanocubes (NCs) morphologies.
Results
The as-fabricated electrodes were investigated as electrocatalysts for enhanced urea electro-oxidation. Because of its 3D nanostructure with minimal agglomeration and a large interfacial surface area with adequate electroactive sites, the Co3O4 NCs/NF had the best energy conversion efficiency of any electrode toward the urea oxidation process. These distinctive features facilitated the electron and urea routes used in the urea electro-oxidation process. It had a low-onset potential of 194.2 mV (vs. Hg/HgO) and a current density of 90.2 mA cm−2 in a 1 M KOH electrolyte. The electrocatalyst demonstrated excellent anodic activity for urea electro-oxidation with an onset potential of 196.7 mV and a current density of 256.1 mA cm−2 in 1 M KOH + 0.3 M urea concentration. Furthermore, the Co3O4 NCs/NF exhibited long-term stability, as shown by chronoamperometry and stepwise tests after 3600 s in the presence of urea under various operating conditions.
Conclusions
Compared to all the fabricated Co3O4 nanostructures, the Co3O4 nanocubes revealed the highest electrocatalytic performance toward urea electro-oxidation in all concentrations. Therefore, Co3O4 NCs/NF is a promising, robust, and efficient electrocatalyst for direct urea fuel cell applications.
氧化钴(Co3O4)是一种很有前途的电催化剂,用于高效尿素电氧化,解决功耗和环境挑战。采用绿色、简便的水热方法,实现了在Ni泡沫(NF)衬底上生长独立的Co3O4纳米结构的可控设计。采用不同的还原剂合成了不同形态的Co3O4,包括纳米粒子、纳米线和纳米立方(NCs)形态。结果对制备的电极作为强化尿素电氧化的电催化剂进行了研究。在尿素氧化过程中,Co3O4 NCs/NF具有最小团聚的三维纳米结构和较大的界面表面积和充足的电活性位点,具有最佳的能量转换效率。这些独特的特性使得在尿素电氧化过程中使用电子和尿素路线更加方便。它具有194.2 mV (vs. Hg/HgO)的低电位和90.2 mA cm−2的电流密度,在1 M KOH电解质中。在1 M KOH + 0.3 M尿素浓度下,该电催化剂表现出优异的尿素电氧化活性,起始电位为196.7 mV,电流密度为256.1 mA cm−2。此外,在不同的操作条件下,在尿素存在的3600 s后,通过计时电流法和逐步测试表明,Co3O4 nc /NF具有长期稳定性。结论与制备的Co3O4纳米结构相比,Co3O4纳米立方在不同浓度下对尿素电氧化的催化性能最高。因此,Co3O4 NCs/NF是一种有前途的、强大的、高效的直接尿素燃料电池电催化剂。
{"title":"Rational design of cobalt oxide nanocubes arrays on Ni foam as durable and robust electrocatalyst for urea electro-oxidation","authors":"Mona M. Ismail, Ahmed A. Farghali, Ahmed G. El-Deen","doi":"10.1186/s43088-024-00572-z","DOIUrl":"10.1186/s43088-024-00572-z","url":null,"abstract":"<div><h3>Background</h3><p>Cobalt oxide (Co<sub>3</sub>O<sub>4</sub>) is a promising electrocatalyst for efficient urea electro-oxidation, tackling power consumption and environmental challenges. The controllable design of free-standing Co<sub>3</sub>O<sub>4</sub> nanostructures grown on Ni foam (NF) substrates was achieved using a green and facile hydrothermal approach. Different reducing agents were applied to synthesize various morphological structures of Co<sub>3</sub>O<sub>4</sub>, including nanoparticles, nanowires, and nanocubes (NCs) morphologies.</p><h3>Results</h3><p>The as-fabricated electrodes were investigated as electrocatalysts for enhanced urea electro-oxidation. Because of its 3D nanostructure with minimal agglomeration and a large interfacial surface area with adequate electroactive sites, the Co<sub>3</sub>O<sub>4</sub> NCs/NF had the best energy conversion efficiency of any electrode toward the urea oxidation process. These distinctive features facilitated the electron and urea routes used in the urea electro-oxidation process. It had a low-onset potential of 194.2 mV (vs. Hg/HgO) and a current density of 90.2 mA cm<sup>−2</sup> in a 1 M KOH electrolyte. The electrocatalyst demonstrated excellent anodic activity for urea electro-oxidation with an onset potential of 196.7 mV and a current density of 256.1 mA cm<sup>−2</sup> in 1 M KOH + 0.3 M urea concentration. Furthermore, the Co<sub>3</sub>O<sub>4</sub> NCs/NF exhibited long-term stability, as shown by chronoamperometry and stepwise tests after 3600 s in the presence of urea under various operating conditions.</p><h3>Conclusions</h3><p>Compared to all the fabricated Co<sub>3</sub>O<sub>4</sub> nanostructures, the Co<sub>3</sub>O<sub>4</sub> nanocubes revealed the highest electrocatalytic performance toward urea electro-oxidation in all concentrations. Therefore, Co<sub>3</sub>O<sub>4</sub> NCs/NF is a promising, robust, and efficient electrocatalyst for direct urea fuel cell applications.</p></div>","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00572-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142753963","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-27DOI: 10.1186/s43088-024-00568-9
Eslam Arafa, Hanan M. F. Abdien, Mohamed A. Zain El-Abideen, Emad Diab, Mohamed Tarek, Mohsen M. Z. El-Dimerdash, Wael K. Elfeil
Background
The global poultry industry has been experiencing increasing condemnation at slaughterhouses since 2011, due to the emergence of avian reovirus (ARV) variant strains. Recently seven ARV genogroup clusters were identified based on the σC sequence of the S1 segment that was used as a genetic marker to characterize and classify ARV.
Results
Among ninety-seven suspected broilers, breeders, and commercial grandparent’s homogenates, ARV was PCR confirmed in thirty-five (36%). Samples were collected from different governorates in Egypt, including Giza–Ismailia–Sharqia–Menoufia, and Behira, between 2020 and 2023. A viral isolation trial was performed on weak positive samples, successfully isolating sixteen samples on the LMH cell line forming the characteristic giant cells of ARV infection. Partial sequencing and phylogenetic analysis of the σC gene of ten ARV PCR positive samples revealed the circulation of ARV genogroup clusters 1, 2, 4, and 5, eight samples being distinguished from commercially available vaccine strains with a low percentage of nucleotides and amino acid identities.
Conclusions
This research demonstrated that the ARV isolates were distinct compared to commercially available vaccine strains based on partial σC sequence. Detection, isolation, and classification of ARV as genogroups 1, 2, 4, and 5 are recorded. A vigilant surveillance to evaluate the ARV situation in Egypt is urgent. We recommend re-evaluating the ARV commercial vaccines by challenging them with circulating Egyptian field isolates, as well as their cross-protection. In addition, the development of autologous vaccines from both classical and variant strains to provide optimal protection.
{"title":"A new record of avian reovirus genogroup clusters isolated and molecularly characterized in chickens in Egypt","authors":"Eslam Arafa, Hanan M. F. Abdien, Mohamed A. Zain El-Abideen, Emad Diab, Mohamed Tarek, Mohsen M. Z. El-Dimerdash, Wael K. Elfeil","doi":"10.1186/s43088-024-00568-9","DOIUrl":"10.1186/s43088-024-00568-9","url":null,"abstract":"<div><h3>Background</h3><p>The global poultry industry has been experiencing increasing condemnation at slaughterhouses since 2011, due to the emergence of avian reovirus (ARV) variant strains. Recently seven ARV genogroup clusters were identified based on the σC sequence of the S1 segment that was used as a genetic marker to characterize and classify ARV.</p><h3>Results</h3><p>Among ninety-seven suspected broilers, breeders, and commercial grandparent’s homogenates, ARV was PCR confirmed in thirty-five (36%). Samples were collected from different governorates in Egypt, including Giza–Ismailia–Sharqia–Menoufia, and Behira, between 2020 and 2023. A viral isolation trial was performed on weak positive samples, successfully isolating sixteen samples on the LMH cell line forming the characteristic giant cells of ARV infection. Partial sequencing and phylogenetic analysis of the σC gene of ten ARV PCR positive samples revealed the circulation of ARV genogroup clusters 1, 2, 4, and 5, eight samples being distinguished from commercially available vaccine strains with a low percentage of nucleotides and amino acid identities.</p><h3>Conclusions</h3><p>This research demonstrated that the ARV isolates were distinct compared to commercially available vaccine strains based on partial σC sequence. Detection, isolation, and classification of ARV as genogroups 1, 2, 4, and 5 are recorded. A vigilant surveillance to evaluate the ARV situation in Egypt is urgent. We recommend re-evaluating the ARV commercial vaccines by challenging them with circulating Egyptian field isolates, as well as their cross-protection. In addition, the development of autologous vaccines from both classical and variant strains to provide optimal protection.</p></div>","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00568-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142714627","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-26DOI: 10.1186/s43088-024-00581-y
Ebtihal salah, Heba El esh, Eman S. Abdel-Reheim, Manal Abdul-Hamid
{"title":"Retraction Note: Ameliorative effects of Artemisia and Echinacea extracts against hepato and cardiotoxicity induced by DMBA on albino rats: experimental and molecular docking analyses","authors":"Ebtihal salah, Heba El esh, Eman S. Abdel-Reheim, Manal Abdul-Hamid","doi":"10.1186/s43088-024-00581-y","DOIUrl":"10.1186/s43088-024-00581-y","url":null,"abstract":"","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00581-y","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142714204","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-26DOI: 10.1186/s43088-024-00575-w
Fatma Khalil, Nashwa shehata, Marwa A. Ibrahim, Safaa Nady, H. H. Emeash, Asmaa K. Abdelghany
Background
Improvement of performance, temperament, and fecundity of lambs using medicinal plants is considered a recent approach in the sheep industry. Climate change, especially in non-controlled houses, affects animals' production. Thus, the current study aimed to determine how turmeric (TU) affected the temperament, performance, and lamb fecundity under three different housing conditions. Thirty-six Ossimi male lambs (about 6 months of age) were randomly divided into three groups under three different housing conditions (n = 12; semi-shaded building, fully shaded building, and semi-shaded building with trees); in each house lambs were subdivided into non-treated (n = 6) and treated (n = 6; 1 g TU lambday) groups for 3 months. Performance and temperament scoring have been recorded. Various biochemical parameters (total protein, glucose and oxidative damage), gene expression of metabolic function and growth indicators (insulin growth factor: IGF-1, leptin: LEP, and myostatin: MSTN), and testosterone level were measured.
Results
The obtained data showed that TU improved the lambs' temperament in SSB-T and FSB-T lambs; lambs' weight gain enhanced in treated lambs in all houses in the 3rd month. The results of biochemical parameters showed fluctuations throughout the experiment; total protein was elevated in FSB-NT lambs in the 3rd month, while glucose was elevated in SSB + T-NT in the 1st and 2nd month and then decreased in the 3rd month. The MDA elevated in FSB-T and SSB + T-T in the 2nd and 3rd month. TU supplementation elevated the reduced testosterone level in the SSB-T lambs and resulted in significant upregulation of IGF1, and LEP; however, MSTN downregulated in the treated lambs among all housing systems.
Conclusion
Data suggested TU improved lambs' growth and tempered in all houses and ameliorated the recorded reduction in testosterone levels in the SSB house which is commonly used in sheep and upregulated the IGF1 and LEP gene levels. Hence, the use of TU as a feed additive improved lambs' growth.
{"title":"Improving lambs’ temperament, performance, and fecundity under three different housing conditions via oxidative stress reduction, metabolic and growth genes regulation by turmeric supplementation","authors":"Fatma Khalil, Nashwa shehata, Marwa A. Ibrahim, Safaa Nady, H. H. Emeash, Asmaa K. Abdelghany","doi":"10.1186/s43088-024-00575-w","DOIUrl":"10.1186/s43088-024-00575-w","url":null,"abstract":"<div><h3>Background</h3><p>Improvement of performance, temperament, and fecundity of lambs using medicinal plants is considered a recent approach in the sheep industry. Climate change, especially in non-controlled houses, affects animals' production. Thus, the current study aimed to determine how turmeric (TU) affected the temperament, performance, and lamb fecundity under three different housing conditions. Thirty-six Ossimi male lambs (about 6 months of age) were randomly divided into three groups under three different housing conditions (n = 12; semi-shaded building, fully shaded building, and semi-shaded building with trees); in each house lambs were subdivided into non-treated (n = 6) and treated (n = 6; 1 g TU lambday) groups for 3 months. Performance and temperament scoring have been recorded. Various biochemical parameters (total protein, glucose and oxidative damage), gene expression of metabolic function and growth indicators (insulin growth factor<i>: IGF-1,</i> leptin<i>: LEP,</i> and myostatin: <i>MSTN)</i>, and testosterone level were measured.</p><h3>Results</h3><p>The obtained data showed that TU improved the lambs' temperament in SSB-T and FSB-T lambs; lambs' weight gain enhanced in treated lambs in all houses in the 3rd month. The results of biochemical parameters showed fluctuations throughout the experiment; total protein was elevated in FSB-NT lambs in the 3rd month, while glucose was elevated in SSB + T-NT in the 1st and 2nd month and then decreased in the 3rd month. The MDA elevated in FSB-T and SSB + T-T in the 2nd and 3rd month. TU supplementation elevated the reduced testosterone level in the SSB-T lambs and resulted in significant upregulation of <i>IGF1,</i> and <i>LEP;</i> however,<i> MSTN</i> downregulated in the treated lambs among all housing systems.</p><h3>Conclusion</h3><p>Data suggested TU improved lambs' growth and tempered in all houses and ameliorated the recorded reduction in testosterone levels in the SSB house which is commonly used in sheep and upregulated the <i>IGF1</i> and <i>LEP</i> gene levels. Hence, the use of TU as a feed additive improved lambs' growth.</p></div>","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00575-w","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142714254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-25DOI: 10.1186/s43088-024-00577-8
Bharath Kumar Chagaleti, Venkatesan Saravanan, M. K. Kathiravan
Background
The global landscape of public health faces significant challenges attributed to the prevalence of cancer and the emergence of treatment resistance. This study addresses these challenges by focusing on Cyclin-dependent Kinase 2 (CDK2) and employing a systematic computational approach for the discovery of novel cancer therapeutics.
Results
Initial ligand-based pharmacophore modelling, utilizing a training set of five reported CDK2 inhibitors, yielded a robust model characterized by Aro|Hyd| and |Acc|Don| features. Screening this validated model against the ZINC database identified 1881 hits, which were further subjected to molecular docking studies. The top 10 compounds (Z1–Z10) selected from the docking studies underwent Pharmacokinetic parameters Absorption, Distribution, Metabolism, Excretion and Toxicity profiling, Density Functional Theory (DFT) studies and the top two went for 100ns molecular dynamics (MD) simulations by comparing them with the standard Roscovitine. Compounds Z1 and Z2 emerged as the most promising, with docking scores of − 8.05 kcal/mol and − 8.02 kcal/mol, respectively. DFT analysis of the top 10 compounds revealed minimal variations in highest occupied molecular orbital–lowest unoccupied molecular orbital energy gaps, indicating consistent electronic stability and reactivity across the candidates. MD simulations of Z1 and Z2 confirmed their stable interactions with CDK2, with root mean square deviation (RMSD) values ranging from 1.4 to 2.5 Å for Z1 and 1.5 to 2.4 Å for Z2.
Conclusion
The current research identified compounds Z1 and Z2, which demonstrated significant potential as potent CDK2 inhibitors for cancer therapy, providing valuable insights into the development of more effective CDK2 inhibitors and addressing the critical need for innovative therapeutic strategies in cancer treatment.
{"title":"Discovery of novel CDK2 inhibitors for cancer treatment: integrating ligand-based pharmacophore modelling, molecular docking, DFT, ADMET, and molecular dynamics simulation studies","authors":"Bharath Kumar Chagaleti, Venkatesan Saravanan, M. K. Kathiravan","doi":"10.1186/s43088-024-00577-8","DOIUrl":"10.1186/s43088-024-00577-8","url":null,"abstract":"<div><h3>Background</h3><p>The global landscape of public health faces significant challenges attributed to the prevalence of cancer and the emergence of treatment resistance. This study addresses these challenges by focusing on Cyclin-dependent Kinase 2 (CDK2) and employing a systematic computational approach for the discovery of novel cancer therapeutics.</p><h3>Results</h3><p>Initial ligand-based pharmacophore modelling, utilizing a training set of five reported CDK2 inhibitors, yielded a robust model characterized by Aro|Hyd| and |Acc|Don| features. Screening this validated model against the ZINC database identified 1881 hits, which were further subjected to molecular docking studies. The top 10 compounds (Z1–Z10) selected from the docking studies underwent Pharmacokinetic parameters Absorption, Distribution, Metabolism, Excretion and Toxicity profiling, Density Functional Theory (DFT) studies and the top two went for 100ns molecular dynamics (MD) simulations by comparing them with the standard Roscovitine. Compounds Z1 and Z2 emerged as the most promising, with docking scores of − 8.05 kcal/mol and − 8.02 kcal/mol, respectively. DFT analysis of the top 10 compounds revealed minimal variations in highest occupied molecular orbital–lowest unoccupied molecular orbital energy gaps, indicating consistent electronic stability and reactivity across the candidates. MD simulations of Z1 and Z2 confirmed their stable interactions with CDK2, with root mean square deviation (RMSD) values ranging from 1.4 to 2.5 Å for Z1 and 1.5 to 2.4 Å for Z2.</p><h3>Conclusion</h3><p>The current research identified compounds Z1 and Z2, which demonstrated significant potential as potent CDK2 inhibitors for cancer therapy, providing valuable insights into the development of more effective CDK2 inhibitors and addressing the critical need for innovative therapeutic strategies in cancer treatment.</p><h3>Graphical abstract</h3><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00577-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142714307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-25DOI: 10.1186/s43088-024-00579-6
Fatma I. Abdallah, Bouthaina A. I. Merdan, Fatma A. I. Shaarawi, Ali F. Mohamed, Tharwat A. Selim, Salwa M. A. Dahesh, Magda H. A. Rady
Background
The possibility of considering Culex pipiens (Cx. pipiens) as a vector for transmitting the hepatitis C virus (HCV) is controversial and needs further investigation. This work aimed to detect the possibility of transmission of the hepatitis C virus by Cx. pipiens and the role of the bacterial microbiota in their midgut.
Main body
Two groups of symbiotic and aposymbiotic of female Cx. pipiens were infected with the hepatitis C virus using an artificial feeding membrane technique. The viral load was detected in the head region for up to 60 min in the infected symbiotic group and 90 min in the aposymbiotic group. The midgut region can harbor the virus for 5 days after feeding. The absence of gut microbiota increases the potentiality of ten females to carry high titer of infective dose (1.2 × 106 IU/ml) of HCV genotype 4a for 6 days. The bacterial midgut microbiota appears to play a significant role in the transmission of HCV. On the other hand, HCV was not detected in the salivary glands of either symbiotic or aposymbiotic mosquitoes during the detection period. Cx. pipiens can transmit HCV from infected female adult mosquitoes to HCV-negative human blood in vitro. The biological parameters were survival rate, blood feeding, oviposition, hatchability rates, and mean digestion period of Cx. pipiens after infection with HCV showed significant changes. Moreover, an ex vivo assay demonstrated that HCV-infected mosquitoes could transmit the virus RNA into healthy blood.
Conclusion
The results suggested that the mosquitoes’ mechanical transmission of HCV was reasonable. In addition, the mosquito microbiome played a significant role in determining the potentiality of mosquitoes as a vector for disseminating HCV infections.
{"title":"The potentiality of Culex pipiens (Diptera: Culicidae) complex holobiont in transmitting the hepatitis C virus (HCV) with the aid of bacterial microbiota in the midgut","authors":"Fatma I. Abdallah, Bouthaina A. I. Merdan, Fatma A. I. Shaarawi, Ali F. Mohamed, Tharwat A. Selim, Salwa M. A. Dahesh, Magda H. A. Rady","doi":"10.1186/s43088-024-00579-6","DOIUrl":"10.1186/s43088-024-00579-6","url":null,"abstract":"<div><h3>Background</h3><p>The possibility of considering <i>Culex pipiens</i> (<i>Cx</i>. <i>pipiens</i>) as a vector for transmitting the hepatitis C virus (HCV) is controversial and needs further investigation. This work aimed to detect the possibility of transmission of the hepatitis C virus by <i>Cx. pipiens</i> and the role of the bacterial microbiota in their midgut.\u0000</p><h3>Main body</h3><p>Two groups of symbiotic and aposymbiotic of female <i>Cx. pipiens</i> were infected with the hepatitis C virus using an artificial feeding membrane technique. The viral load was detected in the head region for up to 60 min in the infected symbiotic group and 90 min in the aposymbiotic group. The midgut region can harbor the virus for 5 days after feeding. The absence of gut microbiota increases the potentiality of ten females to carry high titer of infective dose (1.2 × 10<sup>6</sup> IU/ml) of HCV genotype 4a for 6 days. The bacterial midgut microbiota appears to play a significant role in the transmission of HCV. On the other hand, HCV was not detected in the salivary glands of either symbiotic or aposymbiotic mosquitoes during the detection period. <i>Cx</i>. <i>pipiens</i> can transmit HCV from infected female adult mosquitoes to HCV-negative human blood in vitro. The biological parameters were survival rate, blood feeding, oviposition, hatchability rates, and mean digestion period of <i>Cx</i>. <i>pipiens</i> after infection with HCV showed significant changes. Moreover, an ex vivo assay demonstrated that HCV-infected mosquitoes could transmit the virus RNA into healthy blood.</p><h3>Conclusion</h3><p>The results suggested that the mosquitoes’ mechanical transmission of HCV was reasonable. In addition, the mosquito microbiome played a significant role in determining the potentiality of mosquitoes as a vector for disseminating HCV infections.</p><h3>Graphic abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00579-6","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142714390","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-19DOI: 10.1186/s43088-024-00573-y
Ahmed H. El-Banna, Fatma I. Abo El-Ela, Ahmed Abdel-Wahab, Amr Gamal, Abdel-Razik H. Abdel-Razik, Hossny A. El-Banna, Salma.I. Elsamannoudy, Marwa A. Ibrahim, Asmaa K. Abdelghany
Background
Alzheimer’s disease (AD) is a specific form of neurodegeneration that is marked by impairments in memory and cognition. Exposure to some metal toxins, such as aluminum (AL), was directly linked to the onset of AD as it was hosted in the body via several exposure routes and can change the permeability and cross the blood–brain barrier. Due to amygdaline’s existence, apricot kernel therapy for AD is believed to have been established to be successful in numerous investigations. Amygdaline has been shown to have antioxidant effects that mitigate oxidative damage, and free radicals scavenger activity, as well as amygdaline niosomes as a nanoparticle has been found to improve the drug’s efficiency and selectivity. The objectives of this investigation are to study the neuroprotective role of amygdaline, and amygdaline-loaded niosomes formulation in the diminishment of the incidence of AD in neurotoxin (aluminum chloride; AlCl3) AD animal model.
Results
Data revealed that AlCl3 caused cognitive decline that was confirmed by cognitive behavioral tests (novel object and Y-maze); biochemical disturbances that include marked oxidative stress (elevated malondialdehyde and reduced total antioxidant capacity), reduced acetylcholinesterase, and brain monoamines levels (nor adrenalin; 4-dihydroxyphenylacetic acid; 5-hydroxytryptamine /serotonin; dopamine), and gene regulation upset (down-regulated transcript levels of acetylcholinesterase; monoamine oxidase; BCL-2 and up-regulated transcript levels of BAX), as well as neurodegenerative changes were observed in the hippocampus of AlCl3-treated rats. Treatment with amygdaline and amygdaline-loaded niosomes formulation improved working memory and recognition, alleviated oxidative stress, and restored the levels of brain monoamines and neurotransmitters. Moreover, gene expression data showed a significant down-regulation of BAX, while BCL-2, acetylcholinesterase, and monoamine oxidase were significantly up-regulated. Additionally, the histopathological examination showed reduced neurodegeneration.
Conclusion
Conclusively, it was evident that amygdaline and amygdaline-loaded niosomes formulation possess a neuroprotective and cognitive enhancement role in AD via their potent antioxidant potential, neurotransmitters, and gene expression regulations, as well as neural damage reduction capability.
Graphical abstract
背景阿尔茨海默病(AD)是一种特殊形式的神经变性,以记忆力和认知能力受损为特征。接触某些金属毒素,如铝(AL),与阿兹海默症的发病直接相关,因为铝通过多种接触途径进入人体,并能改变渗透性和穿过血脑屏障。由于杏仁蛋白的存在,杏核疗法治疗注意力缺失症被认为在大量研究中取得了成功。研究表明,杏仁蛋白具有减轻氧化损伤的抗氧化作用和清除自由基的活性,而且杏仁蛋白纳米粒还能提高药物的效率和选择性。本研究的目的是研究杏仁蛋白和杏仁蛋白载体在降低神经毒素(氯化铝;AlCl3)AD 动物模型中 AD 发病率方面的神经保护作用。结果数据显示,AlCl3 会导致认知能力下降,认知行为测试(新物体和 Y 型迷宫)证实了这一点;生化紊乱包括明显的氧化应激(丙二醛升高和总抗氧化能力降低)、乙酰胆碱酯酶和脑单胺类物质水平降低(肾上腺素、4-二羟基苯乙胺、4-二羟基苯乙胺和 4-二羟基苯乙胺);4-二羟基苯乙酸;5-羟色胺/羟色胺;多巴胺)和基因调节紊乱(乙酰胆碱酯酶、单胺氧化酶、BCL-2 的转录水平下调,BAX 的转录水平上调),以及在 AlCl3 处理的大鼠海马中观察到神经退行性变化。使用杏仁基质和杏仁基质负载的niosomes制剂可改善工作记忆和识别能力,缓解氧化应激,并恢复大脑单胺类和神经递质的水平。此外,基因表达数据显示 BAX 明显下调,而 BCL-2、乙酰胆碱酯酶和单胺氧化酶则明显上调。此外,组织病理学检查显示神经退行性病变有所减轻。结论总之,杏仁蛋白和杏仁蛋白载体新体制剂通过其强大的抗氧化潜能、神经递质和基因表达调控以及减少神经损伤的能力,显然具有保护神经和增强认知能力的作用。
{"title":"Therapeutic efficacy of amygdaline and amygdaline-loaded niosomes in a rat model of Alzheimer’s disease via oxidative stress, brain neurotransmitters, and apoptotic pathway","authors":"Ahmed H. El-Banna, Fatma I. Abo El-Ela, Ahmed Abdel-Wahab, Amr Gamal, Abdel-Razik H. Abdel-Razik, Hossny A. El-Banna, Salma.I. Elsamannoudy, Marwa A. Ibrahim, Asmaa K. Abdelghany","doi":"10.1186/s43088-024-00573-y","DOIUrl":"10.1186/s43088-024-00573-y","url":null,"abstract":"<div><h3>Background</h3><p>Alzheimer’s disease (AD) is a specific form of neurodegeneration that is marked by impairments in memory and cognition. Exposure to some metal toxins, such as aluminum (AL), was directly linked to the onset of AD as it was hosted in the body via several exposure routes and can change the permeability and cross the blood–brain barrier. Due to amygdaline’s existence, apricot kernel therapy for AD is believed to have been established to be successful in numerous investigations. Amygdaline has been shown to have antioxidant effects that mitigate oxidative damage, and free radicals scavenger activity, as well as amygdaline niosomes as a nanoparticle has been found to improve the drug’s efficiency and selectivity. The objectives of this investigation are to study the neuroprotective role of amygdaline, and amygdaline-loaded niosomes formulation in the diminishment of the incidence of AD in neurotoxin (aluminum chloride; AlCl<sub>3</sub>) AD animal model.</p><h3>Results</h3><p>Data revealed that AlCl<sub>3</sub> caused cognitive decline that was confirmed by cognitive behavioral tests (novel object and Y-maze); biochemical disturbances that include marked oxidative stress (elevated malondialdehyde and reduced total antioxidant capacity), reduced acetylcholinesterase, and brain monoamines levels (nor adrenalin; 4-dihydroxyphenylacetic acid; 5-hydroxytryptamine /serotonin; dopamine), and gene regulation upset (down-regulated transcript levels of acetylcholinesterase; monoamine oxidase; BCL-2 and up-regulated transcript levels of BAX), as well as neurodegenerative changes were observed in the hippocampus of AlCl<sub>3</sub>-treated rats. Treatment with amygdaline and amygdaline-loaded niosomes formulation improved working memory and recognition, alleviated oxidative stress, and restored the levels of brain monoamines and neurotransmitters. Moreover, gene expression data showed a significant down-regulation of <i>BAX</i>, while BCL-2, acetylcholinesterase, and monoamine oxidase were significantly up-regulated. Additionally, the histopathological examination showed reduced neurodegeneration.</p><h3>Conclusion</h3><p>Conclusively, it was evident that amygdaline and amygdaline-loaded niosomes formulation possess a neuroprotective and cognitive enhancement role in AD via their potent antioxidant potential, neurotransmitters, and gene expression regulations, as well as neural damage reduction capability.</p><h3>Graphical abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00573-y","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142672593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-16DOI: 10.1186/s43088-024-00578-7
Ayodele Isaac Adedokun, Gaius Bala, Nafisa M. K. Elehamer, Raphael Yohanna, Boluwatife Deborah Oyelabi, Samuel Eniola Gana
Background
Tuberculosis, since its discovery has become a global health burden, continuously spreading across the nations of the earth with increased mortality. Its effect on human immunodeficiency virus (HIV) progression and immune cell deterioration cannot be overlooked. The widespread use of traditional and molecular TB diagnostic methods has been hindered by several factors. Nonetheless, the development of a rapid, sensitive, timely, non-invasive diagnostic protocol could revolutionise the diagnostic era and halt the spread of this infectious agent. It could also help in the early diagnosis of the infection in poorly developed areas. The detection efficacy of urine lipoarabinomannan assay as a prospect in tuberculosis diagnosis in HIV-positive patients was assessed in this study. Urine samples were collected into a wide-mouthed universal container from HIV-positive patients with signs and symptom of tuberculosis and HIV advanced disease. Alere determine urine lateral flow—LAM test was used for the detection of LAM antigen in urine samples of HIV-positive patients. The CD4 count of the HIV-positive patients was also documented.
Results
A total of 85 HIV-positive subjects were included in the analysis based on the inclusion criteria. Urinary LAM was reactive in 29 (34.1%) of 85 HIV-positive patients and non-reactive in 56 (69.1%). The majority of the participants had a CD4+ count < 200 cells/µL 60 (70.6%), while others had CD4+ count ≥ to 200 cells/µL 25 (29.4%). There was no statistically significant difference between CD4 count and LAM positivity. Most of the affected age groups in the study were 31–45 years, and females had preponderance in comparison to male subjects.
Conclusions
The use of urinary LAM in HIV-positive patients is a helpful tool for TB screening. It also has a promising ability for early TB diagnosis in the study group and other TB-associated disease conditions in resource-deprived settings. For the general populace, further research is required to certify its sensitivity and specificity.
背景肺结核自发现以来已成为全球健康的负担,在全球各国不断蔓延,死亡率不断上升。结核病对人类免疫缺陷病毒(HIV)进展和免疫细胞恶化的影响不容忽视。传统和分子结核病诊断方法的广泛使用受到多种因素的阻碍。然而,开发一种快速、灵敏、及时、无创的诊断方案可以彻底改变诊断时代,阻止这种传染性病原体的传播。它还有助于贫困地区的感染早期诊断。本研究评估了尿液脂联素甘露聚糖检测作为艾滋病病毒阳性患者结核病诊断前景的检测效果。研究人员从有肺结核症状和体征的 HIV 阳性患者和艾滋病晚期患者中收集尿液样本,并将其放入宽口通用容器中。使用 Alere 尿液侧流-LAM 检测试剂盒检测 HIV 阳性患者尿液样本中的 LAM 抗原。结果 根据纳入标准,共有 85 名 HIV 阳性受试者被纳入分析。在 85 名 HIV 阳性患者中,29 人(34.1%)的尿液 LAM 呈反应性,56 人(69.1%)的尿液 LAM 呈非反应性。大多数参与者的 CD4+ 细胞数为 < 200 cells/µL 60 人(70.6%),而其他人的 CD4+ 细胞数≥至 200 cells/µL 25 人(29.4%)。CD4 细胞数与 LAM 阳性率之间没有统计学意义上的显著差异。本研究中大多数受影响的年龄组为 31-45 岁,女性多于男性。结论:在 HIV 阳性患者中使用尿液 LAM 是一种有用的结核病筛查工具,在研究组和资源匮乏地区的其他结核病相关疾病的早期诊断中也很有前景。对于普通人群,还需要进一步的研究来验证其灵敏度和特异性。
{"title":"Revisiting tuberculosis diagnosis: the prospect of urine lipoarabinomannan assay as a diagnostic tool in people living with human immunodeficiency virus","authors":"Ayodele Isaac Adedokun, Gaius Bala, Nafisa M. K. Elehamer, Raphael Yohanna, Boluwatife Deborah Oyelabi, Samuel Eniola Gana","doi":"10.1186/s43088-024-00578-7","DOIUrl":"10.1186/s43088-024-00578-7","url":null,"abstract":"<div><h3>Background</h3><p>Tuberculosis, since its discovery has become a global health burden, continuously spreading across the nations of the earth with increased mortality. Its effect on human immunodeficiency virus (HIV) progression and immune cell deterioration cannot be overlooked. The widespread use of traditional and molecular TB diagnostic methods has been hindered by several factors. Nonetheless, the development of a rapid, sensitive, timely, non-invasive diagnostic protocol could revolutionise the diagnostic era and halt the spread of this infectious agent. It could also help in the early diagnosis of the infection in poorly developed areas. The detection efficacy of urine lipoarabinomannan assay as a prospect in tuberculosis diagnosis in HIV-positive patients was assessed in this study. Urine samples were collected into a wide-mouthed universal container from HIV-positive patients with signs and symptom of tuberculosis and HIV advanced disease. Alere determine urine lateral flow—LAM test was used for the detection of LAM antigen in urine samples of HIV-positive patients. The CD4 count of the HIV-positive patients was also documented.</p><h3>Results</h3><p>A total of 85 HIV-positive subjects were included in the analysis based on the inclusion criteria. Urinary LAM was reactive in 29 (34.1%) of 85 HIV-positive patients and non-reactive in 56 (69.1%). The majority of the participants had a CD4<sup>+</sup> count < 200 cells/µL 60 (70.6%), while others had CD4<sup>+</sup> count ≥ to 200 cells/µL 25 (29.4%). There was no statistically significant difference between CD4 count and LAM positivity. Most of the affected age groups in the study were 31–45 years, and females had preponderance in comparison to male subjects.</p><h3>Conclusions</h3><p>The use of urinary LAM in HIV-positive patients is a helpful tool for TB screening. It also has a promising ability for early TB diagnosis in the study group and other TB-associated disease conditions in resource-deprived settings. For the general populace, further research is required to certify its sensitivity and specificity.</p></div>","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00578-7","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142645387","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gold ormus is a type of superconductor that can exhibit superconductivity at temperatures below 1 Kelvin, allowing it to conduct electricity without resistance. While not as widely used as other materials like niobium or lead, gold ormus is valuable for research in superconductivity. Limited studies have been conducted on gold ormus. Numerical simulations of the Ginzburg–Landau theory have yielded important results for both gold ormus.
Results
Class-I and class-II superconducting gold ormus, have been successfully simulated using the Runge–Kutta fourth-order method. Our analysis shows the convergence of our simulation outcomes and emphasizes the importance of considering truncation error and selecting appropriate step sizes for accurate results. The periodic factor of penetration (PFP) for each superconductor has been determined, with class-I superconducting gold ormus having a PFP of 250 nm, class-II superconducting gold ormus having a PFP of 566.2 nm. The relationship between the PFP and the length of the penetration depth has also been revealed.
Conclusions
Our study confirms the accuracy of the Runge–Kutta fourth-order method in simulating superconductors. By analyzing the PFP for different superconducting materials, we have identified trends in penetration depth that contribute to understanding superconductivity. Our simulations provide valuable insights for further research in the field of superconductivity. Adjusting parameters carefully ensures reliable simulations and advances progress in superconductivity research.
{"title":"Paving the way for future advancements in superconductivity research through gold ormus studies","authors":"Mohamad Hasson, Mohamad Asem Alkourdi, Marwan Al-Raeei","doi":"10.1186/s43088-024-00550-5","DOIUrl":"10.1186/s43088-024-00550-5","url":null,"abstract":"<div><h3>Background</h3><p>Gold ormus is a type of superconductor that can exhibit superconductivity at temperatures below 1 Kelvin, allowing it to conduct electricity without resistance. While not as widely used as other materials like niobium or lead, gold ormus is valuable for research in superconductivity. Limited studies have been conducted on gold ormus. Numerical simulations of the Ginzburg–Landau theory have yielded important results for both gold ormus.</p><h3>Results</h3><p>Class-I and class-II superconducting gold ormus, have been successfully simulated using the Runge–Kutta fourth-order method. Our analysis shows the convergence of our simulation outcomes and emphasizes the importance of considering truncation error and selecting appropriate step sizes for accurate results. The periodic factor of penetration (PFP) for each superconductor has been determined, with class-I superconducting gold ormus having a PFP of 250 nm, class-II superconducting gold ormus having a PFP of 566.2 nm. The relationship between the PFP and the length of the penetration depth has also been revealed.</p><h3>Conclusions</h3><p>Our study confirms the accuracy of the Runge–Kutta fourth-order method in simulating superconductors. By analyzing the PFP for different superconducting materials, we have identified trends in penetration depth that contribute to understanding superconductivity. Our simulations provide valuable insights for further research in the field of superconductivity. Adjusting parameters carefully ensures reliable simulations and advances progress in superconductivity research.</p></div>","PeriodicalId":481,"journal":{"name":"Beni-Suef University Journal of Basic and Applied Sciences","volume":"13 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://bjbas.springeropen.com/counter/pdf/10.1186/s43088-024-00550-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142600818","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}