The diverse bacterial community present in various compartments of the mangrove, including, rhizosphere, rhizoplane, phyllosphere and endosphere, reflects a vital ecological function necessary for thriving in conditions characterised by high salinity, tidal fluctuations, and waterlogging. This study employed 16S rRNA gene amplicon sequencing (metabarcoding) using the Illumina high-throughput sequencing technology for the comprehensive analysis of bacterial diversity and its ecosystem functioning within the rhizosphere compartment (RC) and root endophytic compartment (EC) of the salt-tolerant mangrove species Rhizophora apiculata. This study revealed significantly higher bacterial diversity in the RC compared to that found in the EC, as assessed by both α-diversity and β-diversity metrices. The taxonomic analysis identified a total of 58 bacterial phyla, belonging to 163 classes, 419 orders, 672 families, 1187 genera and 2559 species in both the compartments. The five predominant bacterial phyla identified were Proteobacteria, Acidobacteriota, Bacteroidota, Patescibacteria and Desulfobacteriota. Among these phyla, Proteobacteria were the most abundant in both RC and EC, followed by Desulfobacteriota in the EC and Acidobacteriota in the RC. Furthermore, a core set of abundant bacterial genera was observed in both the endophytic and rhizospheric communities. These genera hitherto play essential roles in nutrient cycling, pollutant degradation and the maintenance of ecosystem stability. The dominant genera were Sulfurifustis, Spirochaeta, Novosphingobium, Candidatus Moranbacteria, Lacunisphaera, Candidatus Kaiserbacteria, Ignavibacterium, Dongia and Candidatus sp. Computational predictions indicated that the metabolic versatility associated with the functional genes included cellular processes, nutrient metabolism and genetic information processing. Endosphere associated bacteria are linked to s adaptive microbial strategies whereas rhizosphere communities drive organic matter turn over, redox regulation and environmental buffering. This study explores the complexassociation between Rhizophora apiculata and its associated bacteriome and offers valuable insights into this relationship.
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