Pub Date : 2025-10-01DOI: 10.1016/j.rhisph.2025.101202
Chunhua Lv , Ying Jin , Yiling Li , Zhenghu Zhou
Microbial genomic traits reflect microbial community responses and adaptations to resource and stress variations. However, less is known about how the co-variation between bacterial genome traits and root functional traits affects soil multifunctionality (i.e., the soil's capacity to support multiple ecological functions and services simultaneously) in response to drought. Here, we conducted a short-term rainfall exclusion experiment in a common garden with five temperate tree species in northeast China. Our results revealed rhizosphere bacteria associated with foraging roots (with high specific root length and area) exhibited larger genome size, a higher number of coding genes, elevated GC content, and increased body size. These root and bacterial traits were also positively correlated with high rhizosphere soil multifunctionality. In addition, foraging roots were linked to stronger rhizosphere effects on bacterial traits, while both root foraging capacity and energy reserves (soluble sugars and starch) were positively associated with rhizosphere effects on soil multifunctionality. Drought increased bacterial genome size, the number of coding genes, GC content, and the oligotroph/copiotroph ratio, while bacterial traits and soil multifunctionality in both the rhizosphere and bulk soils exhibited synchronous responses to drought. In summary, our study suggests that co-variation between bacterial genomes and root functional traits has critical regulation on soil function and rhizosphere effects.
{"title":"Co-variation between bacterial genome traits and root functional traits influences soil multifunctionality of five temperate tree species","authors":"Chunhua Lv , Ying Jin , Yiling Li , Zhenghu Zhou","doi":"10.1016/j.rhisph.2025.101202","DOIUrl":"10.1016/j.rhisph.2025.101202","url":null,"abstract":"<div><div>Microbial genomic traits reflect microbial community responses and adaptations to resource and stress variations. However, less is known about how the co-variation between bacterial genome traits and root functional traits affects soil multifunctionality (i.e., the soil's capacity to support multiple ecological functions and services simultaneously) in response to drought. Here, we conducted a short-term rainfall exclusion experiment in a common garden with five temperate tree species in northeast China. Our results revealed rhizosphere bacteria associated with foraging roots (with high specific root length and area) exhibited larger genome size, a higher number of coding genes, elevated GC content, and increased body size. These root and bacterial traits were also positively correlated with high rhizosphere soil multifunctionality. In addition, foraging roots were linked to stronger rhizosphere effects on bacterial traits, while both root foraging capacity and energy reserves (soluble sugars and starch) were positively associated with rhizosphere effects on soil multifunctionality. Drought increased bacterial genome size, the number of coding genes, GC content, and the oligotroph/copiotroph ratio, while bacterial traits and soil multifunctionality in both the rhizosphere and bulk soils exhibited synchronous responses to drought. In summary, our study suggests that co-variation between bacterial genomes and root functional traits has critical regulation on soil function and rhizosphere effects.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101202"},"PeriodicalIF":3.5,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145267530","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-01DOI: 10.1016/j.rhisph.2025.101201
Argha Sinha, Mohita Nigam, Shilpi Sharma
The necessity to effectively manage drought stress in agriculture is becoming more fundamental as climate change continues to compromise global food security. In plants, drought vitiates their osmotic balance, nutrient acquisition, and photosynthetic performance. Recent advances show that microbiome-mediated rhizosphere engineering can buffer these effects by activating defined physiological pathways in the host. Beneficial soil-dwelling microbes living in close association with roots can enhance drought tolerance via ABA-arbitrated stomatal regulation, osmolyte accumulation, antioxidant enzyme induction, aquaporin-mediated water transport modulation, and root system architecture restructuring. Rhizosphere engineering possesses excellent potential to bypass the limitations associated with conventional bioformulations such as limited persistence and competitive interactions with native microbes. Two complementary strategies dominate this field: designing synthetic microbial communities (SMCs), which stacks functional traits for stabilizing water-use efficiency, and host-mediated microbiome engineering (HMME), which selects adaptive communities through iterative host-driven filtering. While controlled investigations corroborate these processes, translation to field conditions is stalled by ecological variability and lack of systematic trial designs. Moving forward, progress will require systematic mapping of microbial functions to plant drought-response pathways using multi-omics. Besides, there is a need for development of hybrid pipelines that combine top-down and bottom-up microbiome engineering, standardized bioinoculant formulation, delivery, and persistence tracking, and long-term, multi-site validation under realistic agronomic scenarios. In this review, we synthesize mechanistic insights, benchmark current approaches, and outline practical roadmaps for scaling microbiome-based drought mitigation techniques towards producing resilient, climate-smart crops. Utilizing acclimatizable plant-microbiome interactions is of utmost importance for ushering in agricultural sustainability in water-scarce environments.
{"title":"Microbiome-mediated rhizosphere engineering for the alleviation of drought stress: A promising strategy for agricultural sustainability","authors":"Argha Sinha, Mohita Nigam, Shilpi Sharma","doi":"10.1016/j.rhisph.2025.101201","DOIUrl":"10.1016/j.rhisph.2025.101201","url":null,"abstract":"<div><div>The necessity to effectively manage drought stress in agriculture is becoming more fundamental as climate change continues to compromise global food security. In plants, drought vitiates their osmotic balance, nutrient acquisition, and photosynthetic performance. Recent advances show that microbiome-mediated rhizosphere engineering can buffer these effects by activating defined physiological pathways in the host. Beneficial soil-dwelling microbes living in close association with roots can enhance drought tolerance via ABA-arbitrated stomatal regulation, osmolyte accumulation, antioxidant enzyme induction, aquaporin-mediated water transport modulation, and root system architecture restructuring. Rhizosphere engineering possesses excellent potential to bypass the limitations associated with conventional bioformulations such as limited persistence and competitive interactions with native microbes. Two complementary strategies dominate this field: designing synthetic microbial communities (SMCs), which stacks functional traits for stabilizing water-use efficiency, and host-mediated microbiome engineering (HMME), which selects adaptive communities through iterative host-driven filtering. While controlled investigations corroborate these processes, translation to field conditions is stalled by ecological variability and lack of systematic trial designs. Moving forward, progress will require systematic mapping of microbial functions to plant drought-response pathways using multi-omics. Besides, there is a need for development of hybrid pipelines that combine top-down and bottom-up microbiome engineering, standardized bioinoculant formulation, delivery, and persistence tracking, and long-term, multi-site validation under realistic agronomic scenarios. In this review, we synthesize mechanistic insights, benchmark current approaches, and outline practical roadmaps for scaling microbiome-based drought mitigation techniques towards producing resilient, climate-smart crops. Utilizing acclimatizable plant-microbiome interactions is of utmost importance for ushering in agricultural sustainability in water-scarce environments.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101201"},"PeriodicalIF":3.5,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145268074","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Root mucilage plays a pivotal role in mediating plant-soil interactions, influencing rhizosphere physical, biochemical, hydraulic, and microbial functions. Current studies frequently overlook the consistent co-occurrence and functions of root cap border cells within root mucilage, as confirmed through microscopic observations. This oversight may lead to misinterpretations of isolated effects of ‘pure’ mucilage. Here, we propose the concept of the ‘mucicell’, a composite functional unit comprising mucilage and its embedded, metabolically active border cells, as an accurate framework to describe the biological material and its functions within the rhizosphere. This opinion article critically re-evaluates key rhizosphere functions, including its hydrophobicity after drying and subsequent rewetting, water retention, and microbial dynamics, all affected by root border cells within mucilage. We argue that many effects traditionally attributed to mucilage alone likely arise from the combined activity of the mucicell complex. The unique biochemical and biophysical attributes of border cells are shown to modulate the properties of mucilage, thereby influencing plant-soil interactions in previously unrecognized ways. Adopting the mucicell concept offers a holistic understanding of rhizodeposition and its role in shaping the rhizosphere functions, with important implications for experimental design and data interpretation.
{"title":"Root border cells within mucilage: the ‘mucicell’ concept for rhizosphere functions","authors":"Meisam Nazari , Asma Fathinejad , Mohammad Hossein Mohammadi , Frédéric Lamblin , Yakov Kuzyakov","doi":"10.1016/j.rhisph.2025.101197","DOIUrl":"10.1016/j.rhisph.2025.101197","url":null,"abstract":"<div><div>Root mucilage plays a pivotal role in mediating plant-soil interactions, influencing rhizosphere physical, biochemical, hydraulic, and microbial functions. Current studies frequently overlook the consistent co-occurrence and functions of root cap border cells within root mucilage, as confirmed through microscopic observations. This oversight may lead to misinterpretations of isolated effects of ‘pure’ mucilage. Here, we propose the concept of the ‘mucicell’, a composite functional unit comprising mucilage and its embedded, metabolically active border cells, as an accurate framework to describe the biological material and its functions within the rhizosphere. This opinion article critically re-evaluates key rhizosphere functions, including its hydrophobicity after drying and subsequent rewetting, water retention, and microbial dynamics, all affected by root border cells within mucilage. We argue that many effects traditionally attributed to mucilage alone likely arise from the combined activity of the mucicell complex. The unique biochemical and biophysical attributes of border cells are shown to modulate the properties of mucilage, thereby influencing plant-soil interactions in previously unrecognized ways. Adopting the mucicell concept offers a holistic understanding of rhizodeposition and its role in shaping the rhizosphere functions, with important implications for experimental design and data interpretation.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101197"},"PeriodicalIF":3.5,"publicationDate":"2025-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145267534","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Flavonoids are among the plant bioactive compounds that may have their production enhanced by arbuscular mycorrhizal fungi (AMF). These antioxidant bioactive compounds are related to plant Sun Protection Factor (SPF), which is relevant to plant-based cosmetic formulations. Although it is known that enhancing the rhizosphere with AMF isolates improves the SPF, the role of AMF consortia in affecting plant SPF is not yet established. The study aimed to select the most efficient mycorrhizal consortium to optimize the production of foliar bioactive compounds, antioxidant activity, and the associated in vitro SPF of Schinus terebinthifolia Raddi seedlings. A randomized experiment was conducted in a greenhouse, with a non-inoculated control and with AMF inoculation of Acaulospora longula, Dentiscutata heterogama and Entrophospora etunicata inoculation, singly or in consortia. After 191 days, roots were collected to evaluate the mycorrhizal colonization, and leaves were analyzed for photosynthetic pigments, the antioxidant activity, flavonoids, flavonols, and proanthocyanidins content, compounds related to SPF. Allometric parameters were also evaluated. Some selected consortia significantly improved the SPF, phytomass accumulation, and the production of photosynthetic pigments, flavonoids, and proanthocyanidins, with increases reaching up to 200% to control plants. Antioxidant activity was enhanced by approximately 110% due to mycorrhizal inoculation. This study is the first to elucidate the role of AM consortia in modulating the SPF and phytochemistry in leaves of S. terebinthifolia seedlings. The use of consortium containing A. longula, D. heterogama and E. etunicata is recommended to increase the content of bioactive phenolics, antioxidants, and photoprotective activities in S. terebinthifolia phytomass.
{"title":"Bioactive plant secondary metabolite production enhanced by AMF choice in mixed inoculum","authors":"Caio Bezerra Barreto , Rupam Kapoor , Qiang-Sheng Wu , Mohamed Hijri , Odair Alberton , Carmelo José Albanez Bastos-Filho , Michele Dalvina Correia da Silva , Fábio Sérgio Barbosa da Silva","doi":"10.1016/j.rhisph.2025.101198","DOIUrl":"10.1016/j.rhisph.2025.101198","url":null,"abstract":"<div><div>Flavonoids are among the plant bioactive compounds that may have their production enhanced by arbuscular mycorrhizal fungi (AMF). These antioxidant bioactive compounds are related to plant Sun Protection Factor (SPF), which is relevant to plant-based cosmetic formulations. Although it is known that enhancing the rhizosphere with AMF isolates improves the SPF, the role of AMF consortia in affecting plant SPF is not yet established. The study aimed to select the most efficient mycorrhizal consortium to optimize the production of foliar bioactive compounds, antioxidant activity, and the associated <em>in vitro</em> SPF of <em>Schinus terebinthifolia</em> Raddi seedlings. A randomized experiment was conducted in a greenhouse, with a non-inoculated control and with AMF inoculation of <em>Acaulospora longula</em>, <em>Dentiscutata heterogama</em> and <em>Entrophospora etunicata</em> inoculation, singly or in consortia. After 191 days, roots were collected to evaluate the mycorrhizal colonization, and leaves were analyzed for photosynthetic pigments, the antioxidant activity, flavonoids, flavonols, and proanthocyanidins content, compounds related to SPF. Allometric parameters were also evaluated. Some selected consortia significantly improved the SPF, phytomass accumulation, and the production of photosynthetic pigments, flavonoids, and proanthocyanidins, with increases reaching up to 200% to control plants. Antioxidant activity was enhanced by approximately 110% due to mycorrhizal inoculation. This study is the first to elucidate the role of AM consortia in modulating the SPF and phytochemistry in leaves of <em>S. terebinthifolia</em> seedlings. The use of consortium containing <em>A. longula</em>, <em>D. heterogama</em> and <em>E. etunicata</em> is recommended to increase the content of bioactive phenolics, antioxidants, and photoprotective activities in <em>S. terebinthifolia</em> phytomass.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101198"},"PeriodicalIF":3.5,"publicationDate":"2025-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145267532","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-25DOI: 10.1016/j.rhisph.2025.101195
Joice Aline Freiberg , Tine Grebenc , Rafael Marian Callegaro , Zaida Inês Antoniolli
The occurrence of the truffle Tuber floridanum in pecan orchards (Carya illinoinensis Wangenh. K. Koch) in southern Brazil represents a potential new income alternative for pecan farmers. However, little is known regarding the nutritional and morphological parameters of pecan seedlings inoculated with this truffle species. Therefore, we aimed to quantify the ectomycorrhizal association between T. floridanum and pecan seedlings, and to evaluate whether this symbiosis promotes the growth under greenhouse conditions. Pecan seedlings, cultivar Barton, were inoculated with T. floridanum, and after 300 days in the greenhouse, the percentage of mycorrhization, nutritional and morphological growth parameters were evaluated. Our results indicate high levels of T. floridanum colonization in pecan seedlings (78.7 %–99.5 %) after ten months of inoculation. Further studies are recommended to evaluate the long-term effect of this ectomycorrhizal association, particularly under extended cultivation periods and conditions of nutritional stress.
{"title":"Efficient colonization of pecan (Carya illinoinensis) seedlings by Tuber floridanum","authors":"Joice Aline Freiberg , Tine Grebenc , Rafael Marian Callegaro , Zaida Inês Antoniolli","doi":"10.1016/j.rhisph.2025.101195","DOIUrl":"10.1016/j.rhisph.2025.101195","url":null,"abstract":"<div><div>The occurrence of the truffle <em>Tuber floridanum</em> in pecan orchards (<em>Carya illinoinensis</em> Wangenh. K. Koch) in southern Brazil represents a potential new income alternative for pecan farmers. However, little is known regarding the nutritional and morphological parameters of pecan seedlings inoculated with this truffle species. Therefore, we aimed to quantify the ectomycorrhizal association between <em>T. floridanum</em> and pecan seedlings, and to evaluate whether this symbiosis promotes the growth under greenhouse conditions. Pecan seedlings, cultivar Barton, were inoculated with <em>T. floridanum</em>, and after 300 days in the greenhouse, the percentage of mycorrhization, nutritional and morphological growth parameters were evaluated. Our results indicate high levels of <em>T. floridanum</em> colonization in pecan seedlings (78.7 %–99.5 %) after ten months of inoculation. Further studies are recommended to evaluate the long-term effect of this ectomycorrhizal association, particularly under extended cultivation periods and conditions of nutritional stress.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101195"},"PeriodicalIF":3.5,"publicationDate":"2025-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145221687","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-25DOI: 10.1016/j.rhisph.2025.101191
Rita de Cássia Ribeiro da Luz , Rupam Kapoor , Qiang-Sheng Wu , Fábio Sérgio Barbosa da Silva
It is known that edaphic factors can modulate the performance of mycorrhizal biostimulants in promoting the growth and secondary anabolism of plants with medicinal relevance. In this context, the adaptation or growth of these fungi to a high P condition can be a strategy to ensure their efficiency in agricultural systems, given that this nutrient is considered an important modulator of mycorrhizal symbiosis. In this regard, 60% of the studies published over the past decade have investigated the efficiency of mycorrhizal fungal isolates, which occur naturally in environments with high phosphate fertility, in promoting distinct benefits to the host cultivated in a phosphorus-supplemented soil. The remaining 40% of studies discussed this potential, considering inoculants that have been artificially adapted in the laboratory to high soil phosphorus availability. This topic is particularly relevant due to the increasing global demand for phosphate fertilizers in agricultural production. Therefore, this perspective compiles studies that address this issue, highlighting the reported benefits of inoculating arbuscular mycorrhizal fungi, adapted to high phosphorus conditions, in the growth and synthesis of bioactive compounds in hosts cultivated under similar conditions to the substrate of the inoculum source. In addition, the aspects that need to be investigated in future studies to use mycorrhizal isolates adapted to a target condition feasible, are addressed.
{"title":"Are high soil-P adapted arbuscular mycorrhizal fungi key to unlocking plant benefits in fertilized soils?","authors":"Rita de Cássia Ribeiro da Luz , Rupam Kapoor , Qiang-Sheng Wu , Fábio Sérgio Barbosa da Silva","doi":"10.1016/j.rhisph.2025.101191","DOIUrl":"10.1016/j.rhisph.2025.101191","url":null,"abstract":"<div><div>It is known that edaphic factors can modulate the performance of mycorrhizal biostimulants in promoting the growth and secondary anabolism of plants with medicinal relevance. In this context, the adaptation or growth of these fungi to a high P condition can be a strategy to ensure their efficiency in agricultural systems, given that this nutrient is considered an important modulator of mycorrhizal symbiosis. In this regard, 60% of the studies published over the past decade have investigated the efficiency of mycorrhizal fungal isolates, which occur naturally in environments with high phosphate fertility, in promoting distinct benefits to the host cultivated in a phosphorus-supplemented soil. The remaining 40% of studies discussed this potential, considering inoculants that have been artificially adapted in the laboratory to high soil phosphorus availability. This topic is particularly relevant due to the increasing global demand for phosphate fertilizers in agricultural production. Therefore, this perspective compiles studies that address this issue, highlighting the reported benefits of inoculating arbuscular mycorrhizal fungi, adapted to high phosphorus conditions, in the growth and synthesis of bioactive compounds in hosts cultivated under similar conditions to the substrate of the inoculum source. In addition, the aspects that need to be investigated in future studies to use mycorrhizal isolates adapted to a target condition feasible, are addressed.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101191"},"PeriodicalIF":3.5,"publicationDate":"2025-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145221127","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-24DOI: 10.1016/j.rhisph.2025.101194
Priti K. Mote , Pratapsingh S. Khapte , Bharati B. Misal , Shruti S. Sarode , Machindra G. Agale , Ganesh S. Shinde , Sushil S. Changan , Vanita N. Salunkhe , K. Sammi Reddy
Flooding, caused by intense rainfall during the rainy season, severely limits tomato productivity. Grafting tomato onto eggplant or wild tomato species can enhance tolerance by combining genetically diverse root systems with high-yielding scion. The tomato (Solanum lycopersicum) hybrid ‘Aryaman’ was grafted onto thirteen rootstocks from eggplant (S. melongena) and wild tomato species and evaluated under control and ten-day flooding conditions. Significant variation was observed among grafts for growth, physiological, biochemical, fruit quality and yield traits. Eggplant rootstock grafts S.ly/S.me2 and S.ly/S.me3 produced yields two-fold higher under flooding compared to non-grafted tomato, with survival rates of 30 % and 20 %, respectively. In contrast, wild tomato rootstock grafts and non-grafted plants showed complete mortality, resulting in a 90 % yield reduction. The enhanced tolerance of eggplant rootstock grafts is attributed to higher SPAD index, reduced oxidative damage, better plant water status, sustained photosystem II efficiency, and greater root biomass. These results demonstrate that eggplant rootstocks S.me2 and S.me3 mitigate flooding stress through root-mediated mechanisms, enhancing physiological resilience and maintaining tomato yield.
{"title":"Eggplant rootstocks enhance flooding tolerance in grafted tomato compared to wild tomato rootstocks","authors":"Priti K. Mote , Pratapsingh S. Khapte , Bharati B. Misal , Shruti S. Sarode , Machindra G. Agale , Ganesh S. Shinde , Sushil S. Changan , Vanita N. Salunkhe , K. Sammi Reddy","doi":"10.1016/j.rhisph.2025.101194","DOIUrl":"10.1016/j.rhisph.2025.101194","url":null,"abstract":"<div><div>Flooding, caused by intense rainfall during the rainy season, severely limits tomato productivity. Grafting tomato onto eggplant or wild tomato species can enhance tolerance by combining genetically diverse root systems with high-yielding scion. The tomato (<em>Solanum lycopersicum</em>) hybrid ‘Aryaman’ was grafted onto thirteen rootstocks from eggplant (<em>S. melongena</em>) and wild tomato species and evaluated under control and ten-day flooding conditions. Significant variation was observed among grafts for growth, physiological, biochemical, fruit quality and yield traits. Eggplant rootstock grafts <em>S.ly/S.me2</em> and <em>S.ly/S.me3</em> produced yields two-fold higher under flooding compared to non-grafted tomato, with survival rates of 30 % and 20 %, respectively. In contrast, wild tomato rootstock grafts and non-grafted plants showed complete mortality, resulting in a 90 % yield reduction. The enhanced tolerance of eggplant rootstock grafts is attributed to higher SPAD index, reduced oxidative damage, better plant water status, sustained photosystem II efficiency, and greater root biomass. These results demonstrate that eggplant rootstocks <em>S.me2</em> and <em>S.me3</em> mitigate flooding stress through root-mediated mechanisms, enhancing physiological resilience and maintaining tomato yield.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101194"},"PeriodicalIF":3.5,"publicationDate":"2025-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145159120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-23DOI: 10.1016/j.rhisph.2025.101193
Eduarda Lins Falcão , Carmelo José Albanez Bastos Filho , Fábio Sérgio Barbosa da Silva
One of the challenges of using arbuscular mycorrhizal fungi (AMF) inoculants in agriculture is the lack of detailed information regarding production, substrate, and storage conditions. Recently, the negative impact of more than 20 years of storage in cold conditions on the viability and infectivity of Entrophospora etunicata was reported. However, it is not known if more than 20 years of inoculum storage can also affect the AMF efficiency in increasing the foliar metabolism and growth of staple crops, such as Zea mays L. Thus, the aim was to investigate the role of E. etunicata storage in influencing the production of foliar metabolites and growth of Z. mays. Using a E. etunicata isolate, produced and stored since 2000 and 2023 (EE2000 and EE2023) in the inoculation of Z. mays, it was observed that despite having a lower colonization capacity EE2000 has a similar efficiency of EE2023 in increasing the concentration of saponins and plant SPF, being the most efficient isolate in promoting the accumulation of total proteins by 52% compared to the control (p≤ 0.05). On the other hand, EE2023 colonized maize roots extensively and also increased the concentration of total phenolics by approximately 24%, compared to non-inoculated plants (p≤ 0.05). Notwithstanding, neither inoculum is recommended to increase dry matter accumulation and leaf area. It is concluded that long storage in cold conditions does not affect E. etunicata efficiency in increasing the concentration of foliar metabolites and plant SPF. This is the first study to evaluate the efficiency of an AMF after a prolonged storage period.
{"title":"24 years of cold storage of an AMF inoculant does not affect its symbiotic efficiency","authors":"Eduarda Lins Falcão , Carmelo José Albanez Bastos Filho , Fábio Sérgio Barbosa da Silva","doi":"10.1016/j.rhisph.2025.101193","DOIUrl":"10.1016/j.rhisph.2025.101193","url":null,"abstract":"<div><div>One of the challenges of using arbuscular mycorrhizal fungi (AMF) inoculants in agriculture is the lack of detailed information regarding production, substrate, and storage conditions. Recently, the negative impact of more than 20 years of storage in cold conditions on the viability and infectivity of <em>Entrophospora etunicata</em> was reported. However, it is not known if more than 20 years of inoculum storage can also affect the AMF efficiency in increasing the foliar metabolism and growth of staple crops, such as <em>Zea mays</em> L. Thus, the aim was to investigate the role of <em>E. etunicata</em> storage in influencing the production of foliar metabolites and growth of <em>Z. mays</em>. Using a <em>E. etunicata</em> isolate, produced and stored since 2000 and 2023 (EE2000 and EE2023) in the inoculation of <em>Z. mays</em>, it was observed that despite having a lower colonization capacity EE2000 has a similar efficiency of EE2023 in increasing the concentration of saponins and plant SPF, being the most efficient isolate in promoting the accumulation of total proteins by 52% compared to the control (<em>p</em>≤ 0.05). On the other hand, EE2023 colonized maize roots extensively and also increased the concentration of total phenolics by approximately 24%, compared to non-inoculated plants (<em>p</em>≤ 0.05). Notwithstanding, neither inoculum is recommended to increase dry matter accumulation and leaf area. It is concluded that long storage in cold conditions does not affect <em>E. etunicata</em> efficiency in increasing the concentration of foliar metabolites and plant SPF. This is the first study to evaluate the efficiency of an AMF after a prolonged storage period.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101193"},"PeriodicalIF":3.5,"publicationDate":"2025-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145159121","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-20DOI: 10.1016/j.rhisph.2025.101192
Xuechen Zhang , Jing Wang , Yueke Guo , Nataliya Bilyera , Bahar S. Razavi
Understanding the interplay between temperature and root morphology on soil enzyme activity is crucial for predicting soil carbon (C) cycling under global climate change. Here, two maize (Zea mays L.) genotypes –the wild type with normal root hairs and the rth3 mutant with defective root hairs –were grown at 20 °C and 30 °C for three weeks. Soil zymography and enzyme kinetics were combined to investigate the interactive effect of temperature and root hairs on the spatial distribution of β-glucosidase activity. Additionally, we examined the role of root hairs on the temperature sensitivity of enzyme kinetic parameters (Vmax and Km). Temperature was the main factor influencing the localization pattern of β-glucosidase activity. At 20 °C, hotspots were primarily associated with roots, whereas at 30 °C, they were dispersed beyond the rhizosphere. The presence of root hairs did not alter hotspot area but enlarged rhizosphere extent by 21 % at 20 °C and 9 % at 30 °C. Elevated temperature accelerated cellulose decomposition within the rhizosphere and in bulk soil hotspots, as evidenced by the absence of a canceling effect near roots and changes in enzyme kinetic parameters. Furthermore, wild type exhibited greater Q10-Vmax and a farther distance occurring canceling effect than rth3 mutant, suggesting that the presence of root hairs could lead to a greater reduction in soil C stocks. Overall, temperature primarily governs the distribution and kinetics of β-glucosidase activity, while the presence of root hairs intensifies enzyme temperature sensitivity, highlighting the complex interactions between abiotic and biotic factors in soil C dynamics.
{"title":"Temperature sensitivity and spatial distribution of β-glucosidase activity in microbial hotspots: The impact of root hairs","authors":"Xuechen Zhang , Jing Wang , Yueke Guo , Nataliya Bilyera , Bahar S. Razavi","doi":"10.1016/j.rhisph.2025.101192","DOIUrl":"10.1016/j.rhisph.2025.101192","url":null,"abstract":"<div><div>Understanding the interplay between temperature and root morphology on soil enzyme activity is crucial for predicting soil carbon (C) cycling under global climate change. Here, two maize (<em>Zea mays</em> L.) genotypes –the wild type with normal root hairs and the <em>rth3</em> mutant with defective root hairs –were grown at 20 °C and 30 °C for three weeks. Soil zymography and enzyme kinetics were combined to investigate the interactive effect of temperature and root hairs on the spatial distribution of β-glucosidase activity. Additionally, we examined the role of root hairs on the temperature sensitivity of enzyme kinetic parameters (V<sub>max</sub> and K<sub>m</sub>). Temperature was the main factor influencing the localization pattern of β-glucosidase activity. At 20 °C, hotspots were primarily associated with roots, whereas at 30 °C, they were dispersed beyond the rhizosphere. The presence of root hairs did not alter hotspot area but enlarged rhizosphere extent by 21 % at 20 °C and 9 % at 30 °C. Elevated temperature accelerated cellulose decomposition within the rhizosphere and in bulk soil hotspots, as evidenced by the absence of a canceling effect near roots and changes in enzyme kinetic parameters. Furthermore, wild type exhibited greater Q<sub>10</sub>-V<sub>max</sub> and a farther distance occurring canceling effect than <em>rth3</em> mutant, suggesting that the presence of root hairs could lead to a greater reduction in soil C stocks. Overall, temperature primarily governs the distribution and kinetics of β-glucosidase activity, while the presence of root hairs intensifies enzyme temperature sensitivity, highlighting the complex interactions between abiotic and biotic factors in soil C dynamics.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101192"},"PeriodicalIF":3.5,"publicationDate":"2025-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145110004","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-19DOI: 10.1016/j.rhisph.2025.101187
Tao Zhang , Jing Fang , Qiao Gao , Chang-Bao Chen
Soil improvement is an important practice in modern agriculture for enhancing soil quality. Soil alterations not only not only impact nutrient dynamics but also influence microbial community structure, with microbial communities being key drivers of soil ecological functions. However, the effects of continuous cropping soil improvement on ginseng growth, soil nutrients, and microbial communities remain unclear. In this study, a pot experiment was conducted using improved continuous cropping ginseng soil to examine its effects on ginseng physiology, soil properties, and microbial structure. During ginseng growth, available nitrogen (AN) and available potassium (AK) decreased by 15.71 % and 69.39 %, respectively, while available phosphorus (AP) increased by 17.03 % and electrical conductivity (EC) rose by 49.47 %. Carbon cycle enzymes (S-AMY, S-CL, S-SC) showed enhanced activity in early growth, while nitrogen cycle enzymes (S-PRO, S-URE, S-NR) declined. In addition, ginsenoside accumulation was promoted, with enhanced antioxidant enzyme activities and increased osmotic adjustment substances. Soil Ca and Mg increased by 26.36 % and 27.79 %, while Fe and Zn decreased by 17.21 % and 47.64 %. In the rhizosphere, the relative abundance of Ascomycota and Patescibacteria increased significantly (142.37 % and 61.83 %), while Basidiomycota and Acidobacteriota decreased (62.00 % and 32.16 %). This study reveals key factors influencing ginsenoside accumulation and highlights that optimizing AP, AK, and Zn levels, regulating EC, and managing carbon- and nitrogen-cycle-related enzyme activities can provide new strategies for soil management and resistance improvement in ginseng cultivation.
{"title":"Soil-plant-Microbe interactions and variations under improved cultivation: insights into enhancing ginseng quality","authors":"Tao Zhang , Jing Fang , Qiao Gao , Chang-Bao Chen","doi":"10.1016/j.rhisph.2025.101187","DOIUrl":"10.1016/j.rhisph.2025.101187","url":null,"abstract":"<div><div>Soil improvement is an important practice in modern agriculture for enhancing soil quality. Soil alterations not only not only impact nutrient dynamics but also influence microbial community structure, with microbial communities being key drivers of soil ecological functions. However, the effects of continuous cropping soil improvement on ginseng growth, soil nutrients, and microbial communities remain unclear. In this study, a pot experiment was conducted using improved continuous cropping ginseng soil to examine its effects on ginseng physiology, soil properties, and microbial structure. During ginseng growth, available nitrogen (AN) and available potassium (AK) decreased by 15.71 % and 69.39 %, respectively, while available phosphorus (AP) increased by 17.03 % and electrical conductivity (EC) rose by 49.47 %. Carbon cycle enzymes (S-AMY, S-CL, S-SC) showed enhanced activity in early growth, while nitrogen cycle enzymes (S-PRO, S-URE, S-NR) declined. In addition, ginsenoside accumulation was promoted, with enhanced antioxidant enzyme activities and increased osmotic adjustment substances. Soil Ca and Mg increased by 26.36 % and 27.79 %, while Fe and Zn decreased by 17.21 % and 47.64 %. In the rhizosphere, the relative abundance of <em>Ascomycota</em> and <em>Patescibacteria</em> increased significantly (142.37 % and 61.83 %), while <em>Basidiomycota</em> and <em>Acidobacteriota</em> decreased (62.00 % and 32.16 %). This study reveals key factors influencing ginsenoside accumulation and highlights that optimizing AP, AK, and Zn levels, regulating EC, and managing carbon- and nitrogen-cycle-related enzyme activities can provide new strategies for soil management and resistance improvement in ginseng cultivation.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101187"},"PeriodicalIF":3.5,"publicationDate":"2025-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145325797","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}