Pub Date : 2025-12-04DOI: 10.1016/j.rhisph.2025.101243
Li Zhang , Weiqiang Liu , Yizhong Rong , Jiazhen Xi , Lingfeng Mao , Anna Gunina , Zhen Zhang
Adverse density-dependent effects on competition outcomes (e.g., fecundity) are stronger within species than between them, promoting species coexistence. However, empirical evidence on the resource competition process (e.g., nitrogen, N) and on how plant root traits and fertilization alter this process remains unclear. We conducted a response-surface design competition experiment involving wheat and weeds (Avena fatua L. or Echinochloa crus-galli (L.) P. Beauv., i.e., WB and WO pair) across densities (4, 8, 12, 16 individuals per pot) and proportions (wheat:weed 0:1, 0.25:0.75, 0.5:0.5, 0.75:0.25, 1:0), and fertilization treatment. After seven months, root morphology traits were measured and NH4+ and NO3− uptake was studied using short-term 15N labeling. Without fertilization, high wheat density reduced wheat's root area (αii = −0.130 and −0.147 in WB and WO pairs) and length (−0.110; −0.120) while increasing specific root length (0.040; 0.062) and area (0.019; 0.035) to mitigate a reduction in NH4+ (−0.142) than NO3− (−0.205). Weeds reduced root length and NH4+ uptake. With fertilization, increasing wheat density decreased wheat and weed root length (αii = −0.117, αij = −0.238 in WB pair; αii = −0.117, αij = −0.181 in WO pair) and area (αii = −0.126, αij = −0.283; αii = −0.152, αij = −0.206), NH4+ (αii = −0.281; αij = −0.224), and NO3− uptake (αii = −0.079; αij = −0.326). Weeds also increased specific root length (0.220 and 0.079) and area (0.054 in the WO pair). These N reduction and root plasticity were not observed with increased weed density, suggesting that maintaining weed presence did not reduce wheat's N uptake. Our research indicated that weed management strategies should consider density-dependent N competition and root plasticity within agricultural systems.
{"title":"Wheat density drives negative density dependence in nitrogen uptake and root plasticity in wheat–weed communities","authors":"Li Zhang , Weiqiang Liu , Yizhong Rong , Jiazhen Xi , Lingfeng Mao , Anna Gunina , Zhen Zhang","doi":"10.1016/j.rhisph.2025.101243","DOIUrl":"10.1016/j.rhisph.2025.101243","url":null,"abstract":"<div><div>Adverse density-dependent effects on competition outcomes (e.g., fecundity) are stronger within species than between them, promoting species coexistence. However, empirical evidence on the resource competition process (e.g., nitrogen, N) and on how plant root traits and fertilization alter this process remains unclear. We conducted a response-surface design competition experiment involving wheat and weeds (<em>Avena fatua</em> L. or <em>Echinochloa crus-galli</em> (L.) P. Beauv., i.e., WB and WO pair) across densities (4, 8, 12, 16 individuals per pot) and proportions (wheat:weed 0:1, 0.25:0.75, 0.5:0.5, 0.75:0.25, 1:0), and fertilization treatment. After seven months, root morphology traits were measured and NH<sub>4</sub><sup>+</sup> and NO<sub>3</sub><sup>−</sup> uptake was studied using short-term <sup>15</sup>N labeling. Without fertilization, high wheat density reduced wheat's root area (α<sub><em>ii</em></sub> = −0.130 and −0.147 in WB and WO pairs) and length (−0.110; −0.120) while increasing specific root length (0.040; 0.062) and area (0.019; 0.035) to mitigate a reduction in NH<sub>4</sub><sup>+</sup> (−0.142) than NO<sub>3</sub><sup>−</sup> (−0.205). Weeds reduced root length and NH<sub>4</sub><sup>+</sup> uptake. With fertilization, increasing wheat density decreased wheat and weed root length (α<sub><em>ii</em></sub> = −0.117, α<sub><em>ij</em></sub> = −0.238 in WB pair; α<sub><em>ii</em></sub> = −0.117, α<sub><em>ij</em></sub> = −0.181 in WO pair) and area (α<sub><em>ii</em></sub> = −0.126, α<sub><em>ij</em></sub> = −0.283; α<sub><em>ii</em></sub> = −0.152, α<sub><em>ij</em></sub> = −0.206), NH<sub>4</sub><sup>+</sup> (α<sub><em>ii</em></sub> = −0.281; α<sub><em>ij</em></sub> = −0.224), and NO<sub>3</sub><sup>−</sup> uptake (α<sub><em>ii</em></sub> = −0.079; α<sub><em>ij</em></sub> = −0.326). Weeds also increased specific root length (0.220 and 0.079) and area (0.054 in the WO pair). These N reduction and root plasticity were not observed with increased weed density, suggesting that maintaining weed presence did not reduce wheat's N uptake. Our research indicated that weed management strategies should consider density-dependent N competition and root plasticity within agricultural systems.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101243"},"PeriodicalIF":3.5,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-04DOI: 10.1016/j.rhisph.2025.101239
Wenjing Chen , Kelu Chen , Huakun Zhou , Li Ma
Background
Multiple global change drivers frequently co-occur and interact, complicating predictions of ecosystem responses. However, an integrated understanding of how plant-associated microbiomes—spanning distinct host compartments and ecological niches—adjust to simultaneous climatic and biotic pressures remains limited.
Results
We conducted a randomized block split-plot field experiment in an alpine meadow, incorporating warming, simulated herbivory, and their combination, to examine bacterial and fungal communities associated with leaves and roots across both exogenous and endophytic fractions. High-throughput sequencing enabled a comprehensive evaluation of changes in community structure (diversity and composition), functional potential (predicted via PICRUSt2 and FUNGuild), and co-occurrence network characteristics. Three consistent patterns emerged: (i) marked spatially partitioned responses, wherein phyllosphere microbiomes—particularly exogenous assemblages—displayed high sensitivity to stressors (e.g., increased diversity, network simplification), whereas rhizosphere microbiomes exhibited greater resilience; (ii) community variation was driven predominantly by non-linear interactions between warming and herbivory rather than additive effects, with synergistic or antagonistic outcomes strongly dependent on the niche and ecological dimension; and (iii) a pervasive decoupling among community structure, functional potential, and network stability. For example, root endophytic networks were largely insensitive to combined stressors, yet predicted functional gene profiles changed markedly; conversely, leaf endophytic diversity remained stable even as functional potential was substantially reshaped.
Conclusions
These findings support an integrated “adaptive decoupling” framework, proposing that structural–functional decoupling serves as a central strategy enabling plant microbiomes to maintain resilience under multiple stressors. This mechanism allows communities to rapidly adjust functional capacities without altering overall structure, or to preserve core network stability during structural reorganization, thereby conferring substantial functional plasticity. The results challenge the conventional “structure determines function” paradigm and offer a more mechanistic basis for predicting ecosystem functional stability under accelerating global change.
{"title":"Decoupled adaptation of plant microbiomes under global change: Partitioned responses and functional plasticity to warming and herbivory","authors":"Wenjing Chen , Kelu Chen , Huakun Zhou , Li Ma","doi":"10.1016/j.rhisph.2025.101239","DOIUrl":"10.1016/j.rhisph.2025.101239","url":null,"abstract":"<div><h3>Background</h3><div>Multiple global change drivers frequently co-occur and interact, complicating predictions of ecosystem responses. However, an integrated understanding of how plant-associated microbiomes—spanning distinct host compartments and ecological niches—adjust to simultaneous climatic and biotic pressures remains limited.</div></div><div><h3>Results</h3><div>We conducted a randomized block split-plot field experiment in an alpine meadow, incorporating warming, simulated herbivory, and their combination, to examine bacterial and fungal communities associated with leaves and roots across both exogenous and endophytic fractions. High-throughput sequencing enabled a comprehensive evaluation of changes in community structure (diversity and composition), functional potential (predicted via PICRUSt2 and FUNGuild), and co-occurrence network characteristics. Three consistent patterns emerged: (i) marked spatially partitioned responses, wherein phyllosphere microbiomes—particularly exogenous assemblages—displayed high sensitivity to stressors (e.g., increased diversity, network simplification), whereas rhizosphere microbiomes exhibited greater resilience; (ii) community variation was driven predominantly by non-linear interactions between warming and herbivory rather than additive effects, with synergistic or antagonistic outcomes strongly dependent on the niche and ecological dimension; and (iii) a pervasive decoupling among community structure, functional potential, and network stability. For example, root endophytic networks were largely insensitive to combined stressors, yet predicted functional gene profiles changed markedly; conversely, leaf endophytic diversity remained stable even as functional potential was substantially reshaped.</div></div><div><h3>Conclusions</h3><div>These findings support an integrated “adaptive decoupling” framework, proposing that structural–functional decoupling serves as a central strategy enabling plant microbiomes to maintain resilience under multiple stressors. This mechanism allows communities to rapidly adjust functional capacities without altering overall structure, or to preserve core network stability during structural reorganization, thereby conferring substantial functional plasticity. The results challenge the conventional “structure determines function” paradigm and offer a more mechanistic basis for predicting ecosystem functional stability under accelerating global change.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101239"},"PeriodicalIF":3.5,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-04DOI: 10.1016/j.rhisph.2025.101242
Caio Bezerra Barreto , Francisco Chagas Barbalho Neto , Carmelo José Albanez Bastos-Filho , Qiang-Sheng Wu , Michele Dalvina Correia da Silva , Fábio Sérgio Barbosa da Silva
The association with arbuscular mycorrhizal fungi (AMF) can modulate the production of both primary and secondary metabolites in plants. Although the importance of root lectins in establishing symbiosis is well recognized, nevertheless, it is not known whether mycorrhizal inoculation can modulate the accumulation of leaf lectins. This study aimed to verify whether the inoculation of a mycorrhizal consortium alters the lectins profile in leaves. A greenhouse experiment with two inoculation treatments was carried out: non-inoculated Schinus terebinthifolia Raddi seedlings (control) and seedlings inoculated with an AMF consortium containing Acaulospora longula, Entrophospora etunicata, and Dentiscutata heterogama (AMF+). The leaves were harvested after 191 days and used to prepare aqueous extracts. The extracts were assayed regarding the hemagglutinating activity, for detecting lectins, and the specific hemagglutinating activity (SHA) was determined for ABO group erythrocytes. The concentration of bioatives and the in vitro antioxidant activity were evaluated. The SHA of leaves from mycorrhizal S. terebinthifolia seedlings, evaluated using group A erythrocytes, was enhanced by over 30%, in comparison with non-inoculated plants (p≤ 0.01). However, inoculation of AMF reduced the production of metabolites, the antioxidant activity, and SHA when erythrocytes from groups AB, B, or O were considered (p≤ 0.01). This research provides the first evidence of mycorrhizal symbiosis affecting leaf lectin accumulation.
{"title":"Mycorrhizal consortium: an option to modulate leaf lectin biosynthesis","authors":"Caio Bezerra Barreto , Francisco Chagas Barbalho Neto , Carmelo José Albanez Bastos-Filho , Qiang-Sheng Wu , Michele Dalvina Correia da Silva , Fábio Sérgio Barbosa da Silva","doi":"10.1016/j.rhisph.2025.101242","DOIUrl":"10.1016/j.rhisph.2025.101242","url":null,"abstract":"<div><div>The association with arbuscular mycorrhizal fungi (AMF) can modulate the production of both primary and secondary metabolites in plants. Although the importance of root lectins in establishing symbiosis is well recognized, nevertheless, it is not known whether mycorrhizal inoculation can modulate the accumulation of leaf lectins. This study aimed to verify whether the inoculation of a mycorrhizal consortium alters the lectins profile in leaves. A greenhouse experiment with two inoculation treatments was carried out: non-inoculated <em>Schinus terebinthifolia</em> Raddi seedlings (control) and seedlings inoculated with an AMF consortium containing <em>Acaulospora longula</em>, <em>Entrophospora etunicata,</em> and <em>Dentiscutata heterogama</em> (AMF+). The leaves were harvested after 191 days and used to prepare aqueous extracts. The extracts were assayed regarding the hemagglutinating activity, for detecting lectins, and the specific hemagglutinating activity (SHA) was determined for ABO group erythrocytes. The concentration of bioatives and the <em>in vitro</em> antioxidant activity were evaluated. The SHA of leaves from mycorrhizal <em>S</em>. <em>terebinthifolia</em> seedlings, evaluated using group A erythrocytes, was enhanced by over 30%, in comparison with non-inoculated plants (<em>p≤ </em>0.01). However, inoculation of AMF reduced the production of metabolites, the antioxidant activity, and SHA when erythrocytes from groups AB, B, or O were considered (<em>p≤ </em>0.01). This research provides the first evidence of mycorrhizal symbiosis affecting leaf lectin accumulation.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101242"},"PeriodicalIF":3.5,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-03DOI: 10.1016/j.rhisph.2025.101245
Yixin Song , Tian Zhang , Maryamgul Yasen , Mingyuan Li , Jilian Wang
In mountainous systems, elevation gradients regulate soil properties and plant distribution. Rhizosphere bacteria are key mediators of soil-plant interactions, and their altitudinal variation and host association are core to deciphering the adaptation mechanisms of mountainous ecosystems. In our study, 16S amplicon sequencing was employed to analyze the rhizosphere soil bacterial community structures of different plant species along altitude gradients (1500–4000 m) on the eastern Pamir Plateau, China. The three plant species include Cirsium japonicum, Phragmites australis, and Medicago sativa. The results showed the richness and diversity of bacteria ranked in the order M. sativa, P. australis, and C. japonicum, and the response to altitude varied among plant species. Proteobacteria (34.2 %–41.5 %) and Actinobacteriota (22.8 %–28.6 %) were the dominant phyla, and the bacterial communities were sensitive to altitude changes. The functions of bacteria inferred from 16S data were dominated by metabolism (45.5 %–49.8 %) and genetic information processing (20.4 %–22.3 %), and also exhibited plant-altitude-specific differentiation. Only the bacterial diversity of C. japonicum and P. australis was correlated with soil nutrients, while no significant correlation was observed for M. sativa. Moreover, the correlation between bacterial functions and the rhizosphere bacteriota, as well as soil nutrients, varied among plant species. The metabolic functions were enhanced at 3500 m and 4000 m, and the genetic information processing function of M. sativa was prominent. The partial least squares path model further confirmed the unique altitude adaptation strategies of the three plant species. This study provides data support for deciphering the altitudinal adaptation mechanisms of alpine plant-microbe interactions.
{"title":"Plant species and altitudinal gradients jointly shape rhizosphere bacterial community structure in mountain ecosystems","authors":"Yixin Song , Tian Zhang , Maryamgul Yasen , Mingyuan Li , Jilian Wang","doi":"10.1016/j.rhisph.2025.101245","DOIUrl":"10.1016/j.rhisph.2025.101245","url":null,"abstract":"<div><div>In mountainous systems, elevation gradients regulate soil properties and plant distribution. Rhizosphere bacteria are key mediators of soil-plant interactions, and their altitudinal variation and host association are core to deciphering the adaptation mechanisms of mountainous ecosystems. In our study, 16S amplicon sequencing was employed to analyze the rhizosphere soil bacterial community structures of different plant species along altitude gradients (1500–4000 m) on the eastern Pamir Plateau, China. The three plant species include <em>Cirsium japonicum</em>, <em>Phragmites australis</em>, and <em>Medicago sativa</em>. The results showed the richness and diversity of bacteria ranked in the order <em>M</em>. <em>sativa</em>, <em>P</em>. <em>australis</em>, <em>and C</em>. <em>japonicum</em>, and the response to altitude varied among plant species. Proteobacteria (34.2 %–41.5 %) and Actinobacteriota (22.8 %–28.6 %) were the dominant phyla, and the bacterial communities were sensitive to altitude changes. The functions of bacteria inferred from 16S data were dominated by metabolism (45.5 %–49.8 %) and genetic information processing (20.4 %–22.3 %), and also exhibited plant-altitude-specific differentiation. Only the bacterial diversity of <em>C</em>. <em>japonicum</em> and <em>P</em>. <em>australis</em> was correlated with soil nutrients, while no significant correlation was observed for <em>M</em>. <em>sativa</em>. Moreover, the correlation between bacterial functions and the rhizosphere bacteriota, as well as soil nutrients, varied among plant species. The metabolic functions were enhanced at 3500 m and 4000 m, and the genetic information processing function of <em>M</em>. <em>sativa</em> was prominent. The partial least squares path model further confirmed the unique altitude adaptation strategies of the three plant species. This study provides data support for deciphering the altitudinal adaptation mechanisms of alpine plant-microbe interactions.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101245"},"PeriodicalIF":3.5,"publicationDate":"2025-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-03DOI: 10.1016/j.rhisph.2025.101238
Gongming Wu , Hong Yu , Ningbo Zeng , Zinan Luo , Sheng Gao , Qi Liang , Lin Li , Peiwu Li , Zemao Yang , Dengwang Liu
To address the high acidity and low fertility of acidic red soils in southern China, this study evaluated the effects of calcium hydroxide (Ca(OH)2) and the Aspergillus-Rhizobia Coupling (ARC) microbial inoculant on rhizosphere microbiota, soil chemical properties, and peanut (Arachis hypogaea L.) yield during the middle growth stage of peanuts (i.e., flowering-pegging and pod-setting stages). Calcium hydroxide modulated the rhizosphere microenvironment by increasing soil pH and exchangeable calcium, thereby enhancing microbial α-diversity, stimulating the metabolic activity of both ARC inoculant strains and native microbiota, and enriching carbon and nitrogen (C-N) cycling-related taxa (e.g., Sphingomonas), thus elevating soil organic matter and hydrolyzable nitrogen, and ultimately increasing peanut total pod weight per plant. Meanwhile, the ARC inoculant reshaped the rhizosphere microbial community structure without altering α-diversity, specifically enriching phosphorus and potassium (P-K) activation-related taxa (e.g., Paraglomus), thereby increasing soil available phosphorus and available potassium, and ultimately enhancing peanut total pods per plant. The combined application of these amendments exhibited obvious synergistic effects in the above aspects, with the Ca50A4 treatment (750 kg/ha calcium hydroxide + 60 kg/ha ARC inoculant) achieving the greatest effects. Compared with the control (Ca0A0, CK), the total pods per plant and total pod weight per plant in the Ca50A4 treatment were significantly increased by 57.14 % and 45.18 %, respectively. Overall, calcium hydroxide improved the rhizosphere microhabitat primarily through chemical regulation, whereas the ARC inoculant acted via direct and community-mediated biological regulation. Their synergistic application provides an efficient and innovative strategy for improving soil quality and enhancing peanut productivity in acidic red soil regions of southern China.
{"title":"Synergistic regulation of calcium hydroxide and ARC microbial inoculant on rhizosphere microbiota and soil chemical properties during peanut middle growth stages in acidic red soils","authors":"Gongming Wu , Hong Yu , Ningbo Zeng , Zinan Luo , Sheng Gao , Qi Liang , Lin Li , Peiwu Li , Zemao Yang , Dengwang Liu","doi":"10.1016/j.rhisph.2025.101238","DOIUrl":"10.1016/j.rhisph.2025.101238","url":null,"abstract":"<div><div>To address the high acidity and low fertility of acidic red soils in southern China, this study evaluated the effects of calcium hydroxide (Ca(OH)<sub>2</sub>) and the <em>Aspergillus</em>-Rhizobia Coupling (ARC) microbial inoculant on rhizosphere microbiota, soil chemical properties, and peanut <em>(Arachis hypogaea</em> L.) yield during the middle growth stage of peanuts (i.e., flowering-pegging and pod-setting stages). Calcium hydroxide modulated the rhizosphere microenvironment by increasing soil pH and exchangeable calcium, thereby enhancing microbial α-diversity, stimulating the metabolic activity of both ARC inoculant strains and native microbiota, and enriching carbon and nitrogen (C-N) cycling-related taxa (e.g., <em>Sphingomonas</em>), thus elevating soil organic matter and hydrolyzable nitrogen, and ultimately increasing peanut total pod weight per plant. Meanwhile, the ARC inoculant reshaped the rhizosphere microbial community structure without altering α-diversity, specifically enriching phosphorus and potassium (P-K) activation-related taxa (e.g., <em>Paraglomus</em>), thereby increasing soil available phosphorus and available potassium, and ultimately enhancing peanut total pods per plant. The combined application of these amendments exhibited obvious synergistic effects in the above aspects, with the Ca<sub>50</sub>A<sub>4</sub> treatment (750 kg/ha calcium hydroxide + 60 kg/ha ARC inoculant) achieving the greatest effects. Compared with the control (Ca<sub>0</sub>A<sub>0</sub>, CK), the total pods per plant and total pod weight per plant in the Ca<sub>50</sub>A<sub>4</sub> treatment were significantly increased by 57.14 % and 45.18 %, respectively. Overall, calcium hydroxide improved the rhizosphere microhabitat primarily through chemical regulation, whereas the ARC inoculant acted via direct and community-mediated biological regulation. Their synergistic application provides an efficient and innovative strategy for improving soil quality and enhancing peanut productivity in acidic red soil regions of southern China.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101238"},"PeriodicalIF":3.5,"publicationDate":"2025-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145694921","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.1016/j.rhisph.2025.101232
Alvaro da Costa Freire , Elen Raquel Ferreira Maciel , Françóyse Dávilla de Souza Silva , Jayane Karine Pereira de Araújo , Brayan Paiva Cavalcante , Poliana Coqueiro Dias Araujo
Clonal propagation of Mimosa caesalpiniifolia is essential for multiplying prickleless phenotypes, which enhance silvicultural management and ecological restoration in the Caatinga biome. This study evaluated the effects of plant phenotype (prickly vs. prickleless), indole-3-butyric acid (IBA) concentration, and leaf area reduction on adventitious root formation in mini-cuttings. Three factorial experiments were conducted: (i) evaluation of clonal mini-garden performance across successive prunings; (ii) two phenotypes subjected to three IBA concentrations (0, 2000, and 4000 mg L−1); and (iii) two phenotypes under three levels of leaf area reduction (0 %, 50 %, and 100 %). A randomized block design was adopted, with three replicates and 15 propagules per plot. All mini-stumps survived, with no mortality recorded for either phenotype. Shoot productivity ranged from 156 to 280 shoots/m2 across five collections, and analysis of variance indicated no significant interaction between phenotype and collection number (p > 0.05). A significant interaction between phenotype and IBA was observed (p < 0.05). The prickleless phenotype showed the highest survival and rooting rates (≥80 %) with 2000 mg L−1 IBA, while the prickly phenotype rooted best without IBA, declining with higher auxin levels. Leaf area reduction had a marked effect (p < 0.0001): complete defoliation (100 %) severely impaired rooting and survival, whereas moderate reduction (50 %) enhanced physiological balance and rooting performance. In conclusion, mini-cutting propagation is an effective strategy for M. caesalpiniifolia, requiring phenotype-specific protocols. Exogenous IBA improves rooting in prickleless phenotypes, while prickly ones respond better without auxin application. A 50 % leaf reduction increases propagation efficiency and supports scalable clonal production of this species.
{"title":"Clonal propagation of Mimosa caesalpiniifolia: Effects of phenotype, IBA, and leaf area reduction on rooting and plant propagation","authors":"Alvaro da Costa Freire , Elen Raquel Ferreira Maciel , Françóyse Dávilla de Souza Silva , Jayane Karine Pereira de Araújo , Brayan Paiva Cavalcante , Poliana Coqueiro Dias Araujo","doi":"10.1016/j.rhisph.2025.101232","DOIUrl":"10.1016/j.rhisph.2025.101232","url":null,"abstract":"<div><div>Clonal propagation of <em>Mimosa caesalpiniifolia</em> is essential for multiplying prickleless phenotypes, which enhance silvicultural management and ecological restoration in the Caatinga biome. This study evaluated the effects of plant phenotype (prickly vs. prickleless), indole-3-butyric acid (IBA) concentration, and leaf area reduction on adventitious root formation in mini-cuttings. Three factorial experiments were conducted: (i) evaluation of clonal mini-garden performance across successive prunings; (ii) two phenotypes subjected to three IBA concentrations (0, 2000, and 4000 mg L<sup>−1</sup>); and (iii) two phenotypes under three levels of leaf area reduction (0 %, 50 %, and 100 %). A randomized block design was adopted, with three replicates and 15 propagules per plot. All mini-stumps survived, with no mortality recorded for either phenotype. Shoot productivity ranged from 156 to 280 shoots/m<sup>2</sup> across five collections, and analysis of variance indicated no significant interaction between phenotype and collection number (p > 0.05). A significant interaction between phenotype and IBA was observed (p < 0.05). The prickleless phenotype showed the highest survival and rooting rates (≥80 %) with 2000 mg L<sup>−1</sup> IBA, while the prickly phenotype rooted best without IBA, declining with higher auxin levels. Leaf area reduction had a marked effect (p < 0.0001): complete defoliation (100 %) severely impaired rooting and survival, whereas moderate reduction (50 %) enhanced physiological balance and rooting performance. In conclusion, mini-cutting propagation is an effective strategy for <em>M. caesalpiniifolia</em>, requiring phenotype-specific protocols. Exogenous IBA improves rooting in prickleless phenotypes, while prickly ones respond better without auxin application. A 50 % leaf reduction increases propagation efficiency and supports scalable clonal production of this species.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101232"},"PeriodicalIF":3.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145693518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rhizosphere-associated fungi are recognized as a highly promising and sustainable approach for cultivating high-yielding disease-resistant crops. However, identifying beneficial rhizosphere fungi is a critical step toward achieving optimal protection. In this study, we evaluated 75 rhizosphere-associated fungi isolated from the rhizosphere soil of healthy native muskmelon (Cucumis melo) plants for their in vitro antagonistic activity against Stagonosporopsis cucurbitacearum, the pathogen causing gummy stem blight in muskmelon. Among the 75 isolates, three isolates, Asp-MRF54, Tri-MRF47, and Pen-MRF18, exhibited the highest inhibition rates of 81.9 %, 69.2 %, and 67.6 % respectively, against S. cucurbitacearum mycelial growth. Based on the ITS sequence, the three isolates were identified as Aspergillus niger (Asp-MRF54), Trichoderma virens (Tri-MRF47), and Penicillium italicum (Pen-MRF18). Furthermore, muskmelon seeds primed with Pen-MRF18 and Tri-MRF47 exhibited significantly higher germination rate of 86 % and 81 % and seedling vigor of 1987 and 1955, respectively. Pen-MRF18-primed plants exhibited significant growth improvements, with a 23.8 % increase in chlorophyll content and enhanced nutrient uptake, including nitrogen (33.8 %), phosphorus (42.2 %), and potassium (56.9 %), compared to Tri-MRF47-primed and untreated control plants. Additionally, Pen-MRF18-primed plants demonstrated the highest disease protection of 71.09 % against S. cucurbitacearum, followed by Tri-MRF47-treated plants with 77.5 % protection, compared to non-primed pathogen-inoculated plants. Furthermore, both Pen-MRF18 and Tri-MRF47 treatments induced a significant increase in the accumulation of callose, lignin, phenols, and hydrogen peroxide under both control and pathogen inoculation conditions, indicating an activated cellular defense response. In Pen-MRF18-treated plants challenged with a pathogen, enzymatic activities followed a consistent pattern, with phenylalanine ammonia-lyase and lipoxygenase peaking at 48 h, polyphenol oxidase at 24 h, and peroxidase at 12 h, compared with Tri-MRF47-treated plants. This study demonstrates that Pen-MRF18-primed muskmelon plants exhibit the highest resistance to S. cucurbitacearum infection, followed by those primed with Tri-MRF47, through the activation of integrated cellular, biochemical, and antioxidant defense pathways.
{"title":"Rhizosphere fungi mediated priming reinforces cellular and biochemical defenses against gummy stem blight in muskmelon","authors":"Sindhu Geemarahalli Mahadevaswamy , Savitha De Britto , Praveen Satapute , Mostafa Abdelrahman , Lam-Son Phan Tran , Kazunori Sasaki , Kestur Nagaraj Amruthesh , Sudisha Jogaiah","doi":"10.1016/j.rhisph.2025.101236","DOIUrl":"10.1016/j.rhisph.2025.101236","url":null,"abstract":"<div><div>Rhizosphere-associated fungi are recognized as a highly promising and sustainable approach for cultivating high-yielding disease-resistant crops. However, identifying beneficial rhizosphere fungi is a critical step toward achieving optimal protection. In this study, we evaluated 75 rhizosphere-associated fungi isolated from the rhizosphere soil of healthy native muskmelon (<em>Cucumis melo</em>) plants for their <em>in vitro</em> antagonistic activity against <em>Stagonosporopsis cucurbitacearum</em>, the pathogen causing gummy stem blight in muskmelon. Among the 75 isolates, three isolates, Asp-MRF54, Tri-MRF47, and Pen-MRF18, exhibited the highest inhibition rates of 81.9 %, 69.2 %, and 67.6 % respectively, against <em>S. cucurbitacearum</em> mycelial growth. Based on the ITS sequence, the three isolates were identified as <em>Aspergillus niger</em> (Asp-MRF54), <em>Trichoderma virens</em> (Tri-MRF47), and <em>Penicillium italicum</em> (Pen-MRF18). Furthermore, muskmelon seeds primed with Pen-MRF18 and Tri-MRF47 exhibited significantly higher germination rate of 86 % and 81 % and seedling vigor of 1987 and 1955, respectively. Pen-MRF18-primed plants exhibited significant growth improvements, with a 23.8 % increase in chlorophyll content and enhanced nutrient uptake, including nitrogen (33.8 %), phosphorus (42.2 %), and potassium (56.9 %), compared to Tri-MRF47-primed and untreated control plants. Additionally, Pen-MRF18-primed plants demonstrated the highest disease protection of 71.09 % against <em>S. cucurbitacearum</em>, followed by Tri-MRF47-treated plants with 77.5 % protection, compared to non-primed pathogen-inoculated plants. Furthermore, both Pen-MRF18 and Tri-MRF47 treatments induced a significant increase in the accumulation of callose, lignin, phenols, and hydrogen peroxide under both control and pathogen inoculation conditions, indicating an activated cellular defense response. In Pen-MRF18-treated plants challenged with a pathogen, enzymatic activities followed a consistent pattern, with phenylalanine ammonia-lyase and lipoxygenase peaking at 48 h, polyphenol oxidase at 24 h, and peroxidase at 12 h, compared with Tri-MRF47-treated plants. This study demonstrates that Pen-MRF18-primed muskmelon plants exhibit the highest resistance to <em>S. cucurbitacearum</em> infection, followed by those primed with Tri-MRF47, through the activation of integrated cellular, biochemical, and antioxidant defense pathways.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101236"},"PeriodicalIF":3.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145693517","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.1016/j.rhisph.2025.101225
Hai Tan , Yinli Bi , Shishuang Zhang , Jiapeng Kang , Kun Wang , Dongdong Wang
Ecological restoration in arid mining areas is hindered by severely degraded soil structure and disrupted nutrient cycling. Microbial mechanisms regulating rhizosphere processes remain underexplored. This study assessed the seasonal dynamics of rhizosphere microbial biomass and soil nutrients, along with the one-year effects of dark septate endophytes (DSE) and their extracellular polymeric substances (EPS) on microbial diversity, metabolism, and plant growth in open-pit dumps during early construction stages. After one year, the EPS treatment increased MBC, MBN, and MBP by 71.5 %, 54.1 %, and 55.7 %, respectively, compared to the control. Although DSE treatment alone also enhanced MBC, MBN, and MBP, its effects were generally less pronounced than EPS or ‘EPS + DSE’ treatment. Untargeted metabolomics revealed that lipid-derived compounds comprised over 50 % of differential metabolites and their concentration changes were significantly positively correlated with root biomass. Co-occurrence network analysis showed that EPS and ‘EPS + DSE’ treatments increased bacterial–bacterial edges by 19.24 % and 16.9 %, and bacterial–fungal edges by 49.65 % and 14.75 %, respectively, demonstrating a significant increase in microbial network complexity. Plant biomass increased by 2.18-, 1.93-, and 2.78-fold under EPS, DSE, and combined ‘EPS + DSE’ treatments, respectively, compared with the control, while the net photosynthetic rate increased by 1.86-, 1.20-, and 1.70-fold. These results demonstrate that soil–microbiome–plant interactions mediated by DSE and EPS drive ecological restoration in open-pit dumps, providing a targeted microbial approach for restoring degraded mining soils.
{"title":"Soil–microbiome–plant interactions mediated by dark septate endophytes and extracellular polymeric substances drive ecological restoration in open-pit dumps","authors":"Hai Tan , Yinli Bi , Shishuang Zhang , Jiapeng Kang , Kun Wang , Dongdong Wang","doi":"10.1016/j.rhisph.2025.101225","DOIUrl":"10.1016/j.rhisph.2025.101225","url":null,"abstract":"<div><div>Ecological restoration in arid mining areas is hindered by severely degraded soil structure and disrupted nutrient cycling. Microbial mechanisms regulating rhizosphere processes remain underexplored. This study assessed the seasonal dynamics of rhizosphere microbial biomass and soil nutrients, along with the one-year effects of dark septate endophytes (DSE) and their extracellular polymeric substances (EPS) on microbial diversity, metabolism, and plant growth in open-pit dumps during early construction stages. After one year, the EPS treatment increased MBC, MBN, and MBP by 71.5 %, 54.1 %, and 55.7 %, respectively, compared to the control. Although DSE treatment alone also enhanced MBC, MBN, and MBP, its effects were generally less pronounced than EPS or ‘EPS + DSE’ treatment. Untargeted metabolomics revealed that lipid-derived compounds comprised over 50 % of differential metabolites and their concentration changes were significantly positively correlated with root biomass. Co-occurrence network analysis showed that EPS and ‘EPS + DSE’ treatments increased bacterial–bacterial edges by 19.24 % and 16.9 %, and bacterial–fungal edges by 49.65 % and 14.75 %, respectively, demonstrating a significant increase in microbial network complexity. Plant biomass increased by 2.18-, 1.93-, and 2.78-fold under EPS, DSE, and combined ‘EPS + DSE’ treatments, respectively, compared with the control, while the net photosynthetic rate increased by 1.86-, 1.20-, and 1.70-fold. These results demonstrate that soil–microbiome–plant interactions mediated by DSE and EPS drive ecological restoration in open-pit dumps, providing a targeted microbial approach for restoring degraded mining soils.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101225"},"PeriodicalIF":3.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145623634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.1016/j.rhisph.2025.101233
Zhefeng Xu , Yuqiu Chen , Yibing Wang , Jiahong Sui , Ruixue Yang , Yan Xue , Kemeng Zhang , Jing Fang , Qinghe Zhang , Changbao Chen , Tao Zhang
Ginseng has a wide range of medicinal and edible values, but the specificity of the accumulation of chemical constituents that affect the dual-use value of ginseng is not clear. In this study, We compared 1-year-old (G1), 2-year-old (G2), 3-year-old (G3) and 4-year-old (G4) field-cultivated ginseng to determine specific distribution of chemical constituents and endophytic enzymes in roots and five parts of roots (phloem, xylem, rhizome, lateral roots, and fibrous roots). Meanwhile, the rhizosphere soil properties were determined, and the differences and correlation of these factors were analyzed. We mainly found that the content of soil available silicon, ammonium nitrogen and nitrate nitrogen played a sustained and critical role in the tissue-specificity of ginsenosides. Then, we observed that ribonuclease and laccase in the soil mainly affected the tissue-specific distribution of endophytic enzymes during the first 2 years of ginseng growth. In addition, we found that the tissue-specific distribution of carbohydrate content in root was most influenced by endophytic enzymes. Finally, we constructed an ecological regulation network based on "chemical constituents - endophytic enzymes - soil properties". The results provided a new insight into the tissue-specific distribution of chemical constituents in roots.
{"title":"Spatiotemporal analysis of root tissue composition indicates soil available Si, NH4+and NO3− predict ginseng nutraceutical quality","authors":"Zhefeng Xu , Yuqiu Chen , Yibing Wang , Jiahong Sui , Ruixue Yang , Yan Xue , Kemeng Zhang , Jing Fang , Qinghe Zhang , Changbao Chen , Tao Zhang","doi":"10.1016/j.rhisph.2025.101233","DOIUrl":"10.1016/j.rhisph.2025.101233","url":null,"abstract":"<div><div>Ginseng has a wide range of medicinal and edible values, but the specificity of the accumulation of chemical constituents that affect the dual-use value of ginseng is not clear. In this study, We compared 1-year-old (G1), 2-year-old (G2), 3-year-old (G3) and 4-year-old (G4) field-cultivated ginseng to determine specific distribution of chemical constituents and endophytic enzymes in roots and five parts of roots (phloem, xylem, rhizome, lateral roots, and fibrous roots). Meanwhile, the rhizosphere soil properties were determined, and the differences and correlation of these factors were analyzed. We mainly found that the content of soil available silicon, ammonium nitrogen and nitrate nitrogen played a sustained and critical role in the tissue-specificity of ginsenosides. Then, we observed that ribonuclease and laccase in the soil mainly affected the tissue-specific distribution of endophytic enzymes during the first 2 years of ginseng growth. In addition, we found that the tissue-specific distribution of carbohydrate content in root was most influenced by endophytic enzymes. Finally, we constructed an ecological regulation network based on \"chemical constituents - endophytic enzymes - soil properties\". The results provided a new insight into the tissue-specific distribution of chemical constituents in roots.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101233"},"PeriodicalIF":3.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145693014","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-19DOI: 10.1016/j.rhisph.2025.101235
Ting Gao , Songbao Feng , Sanping Yu , Xianyang Shi , Jin Cheng
Aquatic macrophytes have evolved adaptive mechanisms to thrive in the heterogeneous environments of coal mining subsidence areas. While such mechanisms provide practical solutions for ecological restoration in mining areas, general principles driving community assembly and the potential functions of bacterial microbiotas associated with these plants remain poorly characterized. In this study, we employed Illumina-based sequencing approaches to systematically characterize the bacterial microbiota in two root-associated compartments (rhizosphere and root endosphere) of four dominant macrophyte species (common reed, narrow-leaf cattail, short-lived flatsedge, and tuber bulrush) colonizing contrasting substrates (sediment and coal gangue). Our analyses revealed that the characteristics of root-associated bacterial communities were determined primarily by root compartment rather than by macrophyte species or plant habitat. Rhizospheric and root endophytic communities differed significantly in composition, network complexity, and keystone species, confirming a compartmentalized niche-assembly pattern. Functional predictions demonstrated metabolic niche partitioning between compartments, with distinct biogeochemical pathways enriched in each microenvironment. Specifically, rhizosphere communities were enriched in anaerobic respiration, nitrogen cycling, lignin degradation, and anoxygenic photosynthesis; meanwhile, endospheric microbiota were enriched in dark hydrogen oxidation, ureolysis, methylotrophy, and fumarate respiration. This study sheds new light on the assembly and functional roles of root-associated bacterial communities in coal mining subsidence ponds, supporting future ecological restoration efforts by identifying key functional bacteria.
{"title":"Rhizobacteria of native aquatic macrophytes in coal mining subsidence ponds are shaped by compartment niche differentiation","authors":"Ting Gao , Songbao Feng , Sanping Yu , Xianyang Shi , Jin Cheng","doi":"10.1016/j.rhisph.2025.101235","DOIUrl":"10.1016/j.rhisph.2025.101235","url":null,"abstract":"<div><div>Aquatic macrophytes have evolved adaptive mechanisms to thrive in the heterogeneous environments of coal mining subsidence areas. While such mechanisms provide practical solutions for ecological restoration in mining areas, general principles driving community assembly and the potential functions of bacterial microbiotas associated with these plants remain poorly characterized. In this study, we employed Illumina-based sequencing approaches to systematically characterize the bacterial microbiota in two root-associated compartments (rhizosphere and root endosphere) of four dominant macrophyte species (common reed, narrow-leaf cattail, short-lived flatsedge, and tuber bulrush) colonizing contrasting substrates (sediment and coal gangue). Our analyses revealed that the characteristics of root-associated bacterial communities were determined primarily by root compartment rather than by macrophyte species or plant habitat. Rhizospheric and root endophytic communities differed significantly in composition, network complexity, and keystone species, confirming a compartmentalized niche-assembly pattern. Functional predictions demonstrated metabolic niche partitioning between compartments, with distinct biogeochemical pathways enriched in each microenvironment. Specifically, rhizosphere communities were enriched in anaerobic respiration, nitrogen cycling, lignin degradation, and anoxygenic photosynthesis; meanwhile, endospheric microbiota were enriched in dark hydrogen oxidation, ureolysis, methylotrophy, and fumarate respiration. This study sheds new light on the assembly and functional roles of root-associated bacterial communities in coal mining subsidence ponds, supporting future ecological restoration efforts by identifying key functional bacteria.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101235"},"PeriodicalIF":3.5,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}