首页 > 最新文献

Rhizosphere最新文献

英文 中文
Wheat density drives negative density dependence in nitrogen uptake and root plasticity in wheat–weed communities 小麦密度驱动小麦-杂草群落氮素吸收和根系可塑性的负密度依赖
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-04 DOI: 10.1016/j.rhisph.2025.101243
Li Zhang , Weiqiang Liu , Yizhong Rong , Jiazhen Xi , Lingfeng Mao , Anna Gunina , Zhen Zhang
Adverse density-dependent effects on competition outcomes (e.g., fecundity) are stronger within species than between them, promoting species coexistence. However, empirical evidence on the resource competition process (e.g., nitrogen, N) and on how plant root traits and fertilization alter this process remains unclear. We conducted a response-surface design competition experiment involving wheat and weeds (Avena fatua L. or Echinochloa crus-galli (L.) P. Beauv., i.e., WB and WO pair) across densities (4, 8, 12, 16 individuals per pot) and proportions (wheat:weed 0:1, 0.25:0.75, 0.5:0.5, 0.75:0.25, 1:0), and fertilization treatment. After seven months, root morphology traits were measured and NH4+ and NO3 uptake was studied using short-term 15N labeling. Without fertilization, high wheat density reduced wheat's root area (αii = −0.130 and −0.147 in WB and WO pairs) and length (−0.110; −0.120) while increasing specific root length (0.040; 0.062) and area (0.019; 0.035) to mitigate a reduction in NH4+ (−0.142) than NO3 (−0.205). Weeds reduced root length and NH4+ uptake. With fertilization, increasing wheat density decreased wheat and weed root length (αii = −0.117, αij = −0.238 in WB pair; αii = −0.117, αij = −0.181 in WO pair) and area (αii = −0.126, αij = −0.283; αii = −0.152, αij = −0.206), NH4+ii = −0.281; αij = −0.224), and NO3 uptake (αii = −0.079; αij = −0.326). Weeds also increased specific root length (0.220 and 0.079) and area (0.054 in the WO pair). These N reduction and root plasticity were not observed with increased weed density, suggesting that maintaining weed presence did not reduce wheat's N uptake. Our research indicated that weed management strategies should consider density-dependent N competition and root plasticity within agricultural systems.
物种内部对竞争结果(如繁殖力)的不利密度依赖效应强于物种之间,从而促进了物种共存。然而,关于资源竞争过程(如氮,N)以及植物根系性状和施肥如何改变这一过程的经验证据尚不清楚。以小麦和杂草(Avena fatua L.或Echinochloa cross -galli (L.))为研究对象,进行了响应面设计竞赛实验。测定。不同密度(4、8、12、16)和比例(小麦:杂草0:1、0.25:0.75、0.5:0.5、0.75:0.25、1:0)和施肥处理之间的差异(即WB和WO对)。7个月后,测定根系形态性状,并利用短期15N标记研究NH4+和NO3−吸收。在不施肥的情况下,高密度处理减少了小麦的根面积(αii = - 0.130和- 0.147,WB和WO对)和根长(- 0.110和- 0.120),增加了比根长(0.040和0.062)和比根面积(0.019和0.035),以缓解NH4+(- 0.142)比NO3−(- 0.205)的减少。杂草减少了根长和NH4+的吸收。与施肥,增加小麦密度降低小麦和杂草根长度(α2 = −0.117,αij = −0.238在世行;αii = −0.117,αij = −0.181在我们组)和地区(α2 = −0.126,αij = −0.283;αii = −0.152,αij = −0.206),NH4 +(α2 = −0.281;αij = −0.224),和3号−吸收(α2 = −0.079;αij = −0.326)。杂草也增加了比根长(0.220和0.079)和比根面积(0.054)。这些氮素的减少和根系的可塑性并没有随着杂草密度的增加而增加,这表明杂草的存在并没有降低小麦对氮的吸收。我们的研究表明,杂草管理策略应考虑农业系统内密度依赖性氮竞争和根系可塑性。
{"title":"Wheat density drives negative density dependence in nitrogen uptake and root plasticity in wheat–weed communities","authors":"Li Zhang ,&nbsp;Weiqiang Liu ,&nbsp;Yizhong Rong ,&nbsp;Jiazhen Xi ,&nbsp;Lingfeng Mao ,&nbsp;Anna Gunina ,&nbsp;Zhen Zhang","doi":"10.1016/j.rhisph.2025.101243","DOIUrl":"10.1016/j.rhisph.2025.101243","url":null,"abstract":"<div><div>Adverse density-dependent effects on competition outcomes (e.g., fecundity) are stronger within species than between them, promoting species coexistence. However, empirical evidence on the resource competition process (e.g., nitrogen, N) and on how plant root traits and fertilization alter this process remains unclear. We conducted a response-surface design competition experiment involving wheat and weeds (<em>Avena fatua</em> L. or <em>Echinochloa crus-galli</em> (L.) P. Beauv., i.e., WB and WO pair) across densities (4, 8, 12, 16 individuals per pot) and proportions (wheat:weed 0:1, 0.25:0.75, 0.5:0.5, 0.75:0.25, 1:0), and fertilization treatment. After seven months, root morphology traits were measured and NH<sub>4</sub><sup>+</sup> and NO<sub>3</sub><sup>−</sup> uptake was studied using short-term <sup>15</sup>N labeling. Without fertilization, high wheat density reduced wheat's root area (α<sub><em>ii</em></sub> = −0.130 and −0.147 in WB and WO pairs) and length (−0.110; −0.120) while increasing specific root length (0.040; 0.062) and area (0.019; 0.035) to mitigate a reduction in NH<sub>4</sub><sup>+</sup> (−0.142) than NO<sub>3</sub><sup>−</sup> (−0.205). Weeds reduced root length and NH<sub>4</sub><sup>+</sup> uptake. With fertilization, increasing wheat density decreased wheat and weed root length (α<sub><em>ii</em></sub> = −0.117, α<sub><em>ij</em></sub> = −0.238 in WB pair; α<sub><em>ii</em></sub> = −0.117, α<sub><em>ij</em></sub> = −0.181 in WO pair) and area (α<sub><em>ii</em></sub> = −0.126, α<sub><em>ij</em></sub> = −0.283; α<sub><em>ii</em></sub> = −0.152, α<sub><em>ij</em></sub> = −0.206), NH<sub>4</sub><sup>+</sup> (α<sub><em>ii</em></sub> = −0.281; α<sub><em>ij</em></sub> = −0.224), and NO<sub>3</sub><sup>−</sup> uptake (α<sub><em>ii</em></sub> = −0.079; α<sub><em>ij</em></sub> = −0.326). Weeds also increased specific root length (0.220 and 0.079) and area (0.054 in the WO pair). These N reduction and root plasticity were not observed with increased weed density, suggesting that maintaining weed presence did not reduce wheat's N uptake. Our research indicated that weed management strategies should consider density-dependent N competition and root plasticity within agricultural systems.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101243"},"PeriodicalIF":3.5,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Decoupled adaptation of plant microbiomes under global change: Partitioned responses and functional plasticity to warming and herbivory 全球变化下植物微生物组的解耦适应:对变暖和草食的分区响应和功能可塑性
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-04 DOI: 10.1016/j.rhisph.2025.101239
Wenjing Chen , Kelu Chen , Huakun Zhou , Li Ma

Background

Multiple global change drivers frequently co-occur and interact, complicating predictions of ecosystem responses. However, an integrated understanding of how plant-associated microbiomes—spanning distinct host compartments and ecological niches—adjust to simultaneous climatic and biotic pressures remains limited.

Results

We conducted a randomized block split-plot field experiment in an alpine meadow, incorporating warming, simulated herbivory, and their combination, to examine bacterial and fungal communities associated with leaves and roots across both exogenous and endophytic fractions. High-throughput sequencing enabled a comprehensive evaluation of changes in community structure (diversity and composition), functional potential (predicted via PICRUSt2 and FUNGuild), and co-occurrence network characteristics. Three consistent patterns emerged: (i) marked spatially partitioned responses, wherein phyllosphere microbiomes—particularly exogenous assemblages—displayed high sensitivity to stressors (e.g., increased diversity, network simplification), whereas rhizosphere microbiomes exhibited greater resilience; (ii) community variation was driven predominantly by non-linear interactions between warming and herbivory rather than additive effects, with synergistic or antagonistic outcomes strongly dependent on the niche and ecological dimension; and (iii) a pervasive decoupling among community structure, functional potential, and network stability. For example, root endophytic networks were largely insensitive to combined stressors, yet predicted functional gene profiles changed markedly; conversely, leaf endophytic diversity remained stable even as functional potential was substantially reshaped.

Conclusions

These findings support an integrated “adaptive decoupling” framework, proposing that structural–functional decoupling serves as a central strategy enabling plant microbiomes to maintain resilience under multiple stressors. This mechanism allows communities to rapidly adjust functional capacities without altering overall structure, or to preserve core network stability during structural reorganization, thereby conferring substantial functional plasticity. The results challenge the conventional “structure determines function” paradigm and offer a more mechanistic basis for predicting ecosystem functional stability under accelerating global change.
多个全球变化驱动因素经常同时发生并相互作用,使生态系统响应的预测复杂化。然而,对植物相关微生物群(跨越不同的寄主区室和生态位)如何同时适应气候和生物压力的综合理解仍然有限。结果我们在一个高寒草甸进行了随机块分割样地野外实验,结合变暖、模拟草食及其组合,研究了与叶和根相关的细菌和真菌群落,包括外源和内生部分。高通量测序能够全面评估群落结构(多样性和组成)、功能潜力(通过PICRUSt2和FUNGuild预测)和共现网络特征的变化。出现了三种一致的模式:(i)显著的空间分异响应,其中根际微生物群-特别是外源组合-对压力源(例如,多样性增加,网络简化)表现出高度敏感性,而根际微生物群表现出更大的恢复力;(ii)群落变化主要由升温与草食间的非线性相互作用驱动,而非加性效应,其协同或拮抗结果强烈依赖于生态位和生态维度;(3)社区结构、功能潜力和网络稳定性之间普遍存在解耦。例如,根内生网络在很大程度上对复合胁迫不敏感,但预测的功能基因谱却发生了显著变化;相反,叶片内生多样性保持稳定,即使功能势基本重塑。这些发现支持了一个完整的“适应性解耦”框架,表明结构-功能解耦是植物微生物组在多种胁迫下保持弹性的核心策略。这种机制允许群落在不改变整体结构的情况下快速调整功能能力,或者在结构重组过程中保持核心网络的稳定性,从而赋予实质性的功能可塑性。研究结果挑战了传统的“结构决定功能”范式,为全球变化加速下生态系统功能稳定性的预测提供了更为机械的依据。
{"title":"Decoupled adaptation of plant microbiomes under global change: Partitioned responses and functional plasticity to warming and herbivory","authors":"Wenjing Chen ,&nbsp;Kelu Chen ,&nbsp;Huakun Zhou ,&nbsp;Li Ma","doi":"10.1016/j.rhisph.2025.101239","DOIUrl":"10.1016/j.rhisph.2025.101239","url":null,"abstract":"<div><h3>Background</h3><div>Multiple global change drivers frequently co-occur and interact, complicating predictions of ecosystem responses. However, an integrated understanding of how plant-associated microbiomes—spanning distinct host compartments and ecological niches—adjust to simultaneous climatic and biotic pressures remains limited.</div></div><div><h3>Results</h3><div>We conducted a randomized block split-plot field experiment in an alpine meadow, incorporating warming, simulated herbivory, and their combination, to examine bacterial and fungal communities associated with leaves and roots across both exogenous and endophytic fractions. High-throughput sequencing enabled a comprehensive evaluation of changes in community structure (diversity and composition), functional potential (predicted via PICRUSt2 and FUNGuild), and co-occurrence network characteristics. Three consistent patterns emerged: (i) marked spatially partitioned responses, wherein phyllosphere microbiomes—particularly exogenous assemblages—displayed high sensitivity to stressors (e.g., increased diversity, network simplification), whereas rhizosphere microbiomes exhibited greater resilience; (ii) community variation was driven predominantly by non-linear interactions between warming and herbivory rather than additive effects, with synergistic or antagonistic outcomes strongly dependent on the niche and ecological dimension; and (iii) a pervasive decoupling among community structure, functional potential, and network stability. For example, root endophytic networks were largely insensitive to combined stressors, yet predicted functional gene profiles changed markedly; conversely, leaf endophytic diversity remained stable even as functional potential was substantially reshaped.</div></div><div><h3>Conclusions</h3><div>These findings support an integrated “adaptive decoupling” framework, proposing that structural–functional decoupling serves as a central strategy enabling plant microbiomes to maintain resilience under multiple stressors. This mechanism allows communities to rapidly adjust functional capacities without altering overall structure, or to preserve core network stability during structural reorganization, thereby conferring substantial functional plasticity. The results challenge the conventional “structure determines function” paradigm and offer a more mechanistic basis for predicting ecosystem functional stability under accelerating global change.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101239"},"PeriodicalIF":3.5,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mycorrhizal consortium: an option to modulate leaf lectin biosynthesis 菌根联合体:调节叶片凝集素生物合成的一种选择
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-04 DOI: 10.1016/j.rhisph.2025.101242
Caio Bezerra Barreto , Francisco Chagas Barbalho Neto , Carmelo José Albanez Bastos-Filho , Qiang-Sheng Wu , Michele Dalvina Correia da Silva , Fábio Sérgio Barbosa da Silva
The association with arbuscular mycorrhizal fungi (AMF) can modulate the production of both primary and secondary metabolites in plants. Although the importance of root lectins in establishing symbiosis is well recognized, nevertheless, it is not known whether mycorrhizal inoculation can modulate the accumulation of leaf lectins. This study aimed to verify whether the inoculation of a mycorrhizal consortium alters the lectins profile in leaves. A greenhouse experiment with two inoculation treatments was carried out: non-inoculated Schinus terebinthifolia Raddi seedlings (control) and seedlings inoculated with an AMF consortium containing Acaulospora longula, Entrophospora etunicata, and Dentiscutata heterogama (AMF+). The leaves were harvested after 191 days and used to prepare aqueous extracts. The extracts were assayed regarding the hemagglutinating activity, for detecting lectins, and the specific hemagglutinating activity (SHA) was determined for ABO group erythrocytes. The concentration of bioatives and the in vitro antioxidant activity were evaluated. The SHA of leaves from mycorrhizal S. terebinthifolia seedlings, evaluated using group A erythrocytes, was enhanced by over 30%, in comparison with non-inoculated plants (p≤ 0.01). However, inoculation of AMF reduced the production of metabolites, the antioxidant activity, and SHA when erythrocytes from groups AB, B, or O were considered (p≤ 0.01). This research provides the first evidence of mycorrhizal symbiosis affecting leaf lectin accumulation.
与丛枝菌根真菌(AMF)的关联可以调节植物初级和次级代谢物的产生。虽然根凝集素在建立共生关系中的重要性已得到公认,但接种菌根是否能调节叶凝集素的积累尚不清楚。本研究旨在验证接种菌根联合体是否会改变叶片中凝集素的分布。在大棚试验中,采用两种接种处理,分别为未接种的三叶草(Schinus terebinthifolia Raddi)幼苗(对照)和接种了含有长尾孢子虫(Acaulospora longula)、长尾孢子虫(Entrophospora etunicata)和异齿孢子虫(Dentiscutata heterogama)的AMF组合(AMF+)的幼苗。191天后收获叶片,用于制备水提取物。测定提取物的血凝活性,检测凝集素,测定ABO血型红细胞的特异性血凝活性(SHA)。评价了生物制剂的浓度和体外抗氧化活性。用A组红细胞评价菌根赤霉素幼苗叶片的SHA,与未接种的植株相比提高了30%以上(p≤ 0.01)。然而,当考虑AB组、B组和O组红细胞时,接种AMF降低了代谢物的产生、抗氧化活性和SHA (p≤ 0.01)。本研究首次提供了菌根共生影响叶片凝集素积累的证据。
{"title":"Mycorrhizal consortium: an option to modulate leaf lectin biosynthesis","authors":"Caio Bezerra Barreto ,&nbsp;Francisco Chagas Barbalho Neto ,&nbsp;Carmelo José Albanez Bastos-Filho ,&nbsp;Qiang-Sheng Wu ,&nbsp;Michele Dalvina Correia da Silva ,&nbsp;Fábio Sérgio Barbosa da Silva","doi":"10.1016/j.rhisph.2025.101242","DOIUrl":"10.1016/j.rhisph.2025.101242","url":null,"abstract":"<div><div>The association with arbuscular mycorrhizal fungi (AMF) can modulate the production of both primary and secondary metabolites in plants. Although the importance of root lectins in establishing symbiosis is well recognized, nevertheless, it is not known whether mycorrhizal inoculation can modulate the accumulation of leaf lectins. This study aimed to verify whether the inoculation of a mycorrhizal consortium alters the lectins profile in leaves. A greenhouse experiment with two inoculation treatments was carried out: non-inoculated <em>Schinus terebinthifolia</em> Raddi seedlings (control) and seedlings inoculated with an AMF consortium containing <em>Acaulospora longula</em>, <em>Entrophospora etunicata,</em> and <em>Dentiscutata heterogama</em> (AMF+). The leaves were harvested after 191 days and used to prepare aqueous extracts. The extracts were assayed regarding the hemagglutinating activity, for detecting lectins, and the specific hemagglutinating activity (SHA) was determined for ABO group erythrocytes. The concentration of bioatives and the <em>in vitro</em> antioxidant activity were evaluated. The SHA of leaves from mycorrhizal <em>S</em>. <em>terebinthifolia</em> seedlings, evaluated using group A erythrocytes, was enhanced by over 30%, in comparison with non-inoculated plants (<em>p≤ </em>0.01). However, inoculation of AMF reduced the production of metabolites, the antioxidant activity, and SHA when erythrocytes from groups AB, B, or O were considered (<em>p≤ </em>0.01). This research provides the first evidence of mycorrhizal symbiosis affecting leaf lectin accumulation.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101242"},"PeriodicalIF":3.5,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Plant species and altitudinal gradients jointly shape rhizosphere bacterial community structure in mountain ecosystems 植物种类和海拔梯度共同塑造了山地生态系统根际细菌群落结构
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-03 DOI: 10.1016/j.rhisph.2025.101245
Yixin Song , Tian Zhang , Maryamgul Yasen , Mingyuan Li , Jilian Wang
In mountainous systems, elevation gradients regulate soil properties and plant distribution. Rhizosphere bacteria are key mediators of soil-plant interactions, and their altitudinal variation and host association are core to deciphering the adaptation mechanisms of mountainous ecosystems. In our study, 16S amplicon sequencing was employed to analyze the rhizosphere soil bacterial community structures of different plant species along altitude gradients (1500–4000 m) on the eastern Pamir Plateau, China. The three plant species include Cirsium japonicum, Phragmites australis, and Medicago sativa. The results showed the richness and diversity of bacteria ranked in the order M. sativa, P. australis, and C. japonicum, and the response to altitude varied among plant species. Proteobacteria (34.2 %–41.5 %) and Actinobacteriota (22.8 %–28.6 %) were the dominant phyla, and the bacterial communities were sensitive to altitude changes. The functions of bacteria inferred from 16S data were dominated by metabolism (45.5 %–49.8 %) and genetic information processing (20.4 %–22.3 %), and also exhibited plant-altitude-specific differentiation. Only the bacterial diversity of C. japonicum and P. australis was correlated with soil nutrients, while no significant correlation was observed for M. sativa. Moreover, the correlation between bacterial functions and the rhizosphere bacteriota, as well as soil nutrients, varied among plant species. The metabolic functions were enhanced at 3500 m and 4000 m, and the genetic information processing function of M. sativa was prominent. The partial least squares path model further confirmed the unique altitude adaptation strategies of the three plant species. This study provides data support for deciphering the altitudinal adaptation mechanisms of alpine plant-microbe interactions.
在山地系统中,海拔梯度调节着土壤性质和植物分布。根际细菌是土壤-植物相互作用的关键媒介,其高度变化和寄主关联是破解山地生态系统适应机制的核心。采用16S扩增子测序技术,对帕米尔高原东部海拔1500 ~ 4000 m不同植物根际土壤细菌群落结构进行了分析。这三种植物包括鸢尾花、芦苇和紫花苜蓿。结果表明,土壤细菌的丰富度和多样性依次为sativa、P. australis和C. japonicum,不同植物对海拔的响应存在差异。变形菌门(34.2% % ~ 41.5 %)和放线菌门(22.8% % ~ 28.6 %)为优势菌门,细菌群落对海拔变化敏感。从16S数据推断,细菌的功能主要是代谢(45.5% % -49.8 %)和遗传信息处理(20.4 % -22.3 %),并表现出植物海拔特异性分化。只有日本稻和南方稻的细菌多样性与土壤养分相关,而水稻的细菌多样性与土壤养分相关性不显著。此外,细菌功能与根际菌群以及土壤养分之间的相关性在不同植物种类之间存在差异。在3500 m和4000 m处代谢功能增强,遗传信息加工功能突出。偏最小二乘路径模型进一步证实了三种植物独特的海拔适应策略。本研究为解读高山植物-微生物相互作用的海拔适应机制提供了数据支持。
{"title":"Plant species and altitudinal gradients jointly shape rhizosphere bacterial community structure in mountain ecosystems","authors":"Yixin Song ,&nbsp;Tian Zhang ,&nbsp;Maryamgul Yasen ,&nbsp;Mingyuan Li ,&nbsp;Jilian Wang","doi":"10.1016/j.rhisph.2025.101245","DOIUrl":"10.1016/j.rhisph.2025.101245","url":null,"abstract":"<div><div>In mountainous systems, elevation gradients regulate soil properties and plant distribution. Rhizosphere bacteria are key mediators of soil-plant interactions, and their altitudinal variation and host association are core to deciphering the adaptation mechanisms of mountainous ecosystems. In our study, 16S amplicon sequencing was employed to analyze the rhizosphere soil bacterial community structures of different plant species along altitude gradients (1500–4000 m) on the eastern Pamir Plateau, China. The three plant species include <em>Cirsium japonicum</em>, <em>Phragmites australis</em>, and <em>Medicago sativa</em>. The results showed the richness and diversity of bacteria ranked in the order <em>M</em>. <em>sativa</em>, <em>P</em>. <em>australis</em>, <em>and C</em>. <em>japonicum</em>, and the response to altitude varied among plant species. Proteobacteria (34.2 %–41.5 %) and Actinobacteriota (22.8 %–28.6 %) were the dominant phyla, and the bacterial communities were sensitive to altitude changes. The functions of bacteria inferred from 16S data were dominated by metabolism (45.5 %–49.8 %) and genetic information processing (20.4 %–22.3 %), and also exhibited plant-altitude-specific differentiation. Only the bacterial diversity of <em>C</em>. <em>japonicum</em> and <em>P</em>. <em>australis</em> was correlated with soil nutrients, while no significant correlation was observed for <em>M</em>. <em>sativa</em>. Moreover, the correlation between bacterial functions and the rhizosphere bacteriota, as well as soil nutrients, varied among plant species. The metabolic functions were enhanced at 3500 m and 4000 m, and the genetic information processing function of <em>M</em>. <em>sativa</em> was prominent. The partial least squares path model further confirmed the unique altitude adaptation strategies of the three plant species. This study provides data support for deciphering the altitudinal adaptation mechanisms of alpine plant-microbe interactions.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101245"},"PeriodicalIF":3.5,"publicationDate":"2025-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synergistic regulation of calcium hydroxide and ARC microbial inoculant on rhizosphere microbiota and soil chemical properties during peanut middle growth stages in acidic red soils 氢氧化钙和ARC微生物接种剂对酸性红壤花生生长中期根际微生物群和土壤化学性质的协同调节
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-03 DOI: 10.1016/j.rhisph.2025.101238
Gongming Wu , Hong Yu , Ningbo Zeng , Zinan Luo , Sheng Gao , Qi Liang , Lin Li , Peiwu Li , Zemao Yang , Dengwang Liu
To address the high acidity and low fertility of acidic red soils in southern China, this study evaluated the effects of calcium hydroxide (Ca(OH)2) and the Aspergillus-Rhizobia Coupling (ARC) microbial inoculant on rhizosphere microbiota, soil chemical properties, and peanut (Arachis hypogaea L.) yield during the middle growth stage of peanuts (i.e., flowering-pegging and pod-setting stages). Calcium hydroxide modulated the rhizosphere microenvironment by increasing soil pH and exchangeable calcium, thereby enhancing microbial α-diversity, stimulating the metabolic activity of both ARC inoculant strains and native microbiota, and enriching carbon and nitrogen (C-N) cycling-related taxa (e.g., Sphingomonas), thus elevating soil organic matter and hydrolyzable nitrogen, and ultimately increasing peanut total pod weight per plant. Meanwhile, the ARC inoculant reshaped the rhizosphere microbial community structure without altering α-diversity, specifically enriching phosphorus and potassium (P-K) activation-related taxa (e.g., Paraglomus), thereby increasing soil available phosphorus and available potassium, and ultimately enhancing peanut total pods per plant. The combined application of these amendments exhibited obvious synergistic effects in the above aspects, with the Ca50A4 treatment (750 kg/ha calcium hydroxide + 60 kg/ha ARC inoculant) achieving the greatest effects. Compared with the control (Ca0A0, CK), the total pods per plant and total pod weight per plant in the Ca50A4 treatment were significantly increased by 57.14 % and 45.18 %, respectively. Overall, calcium hydroxide improved the rhizosphere microhabitat primarily through chemical regulation, whereas the ARC inoculant acted via direct and community-mediated biological regulation. Their synergistic application provides an efficient and innovative strategy for improving soil quality and enhancing peanut productivity in acidic red soil regions of southern China.
为解决中国南方酸性红壤高酸性低肥力的问题,本研究评价了氢氧化钙(Ca(OH)2)和曲霉-根瘤菌偶联剂(ARC)微生物接种剂对花生生长中期(即开花和结荚期)根际微生物群、土壤化学性质和花生产量的影响。氢氧化钙通过提高土壤pH和交换性钙来调节根际微环境,从而增强微生物α-多样性,刺激ARC接种菌株和原生微生物群的代谢活性,丰富碳氮(C-N)循环相关类群(如鞘氨单胞菌),从而提高土壤有机质和可水解氮,最终提高花生单株总荚果重。同时,ARC接种剂在不改变α-多样性的情况下,重塑了根际微生物群落结构,特别是增加了磷钾(P-K)激活相关类群(如Paraglomus),从而增加了土壤有效磷和有效钾,最终提高了花生单株总荚果数。这些改进剂联合应用在上述各方面均表现出明显的协同效应,其中以Ca50A4处理(750 kg/ha氢氧化钙+ 60 kg/ha ARC孕育剂)效果最好。与对照(Ca0A0、CK)相比,Ca50A4处理的单株总荚果数和单株总荚果重分别显著提高了57.14 %和45.18 %。总体而言,氢氧化钙主要通过化学调节来改善根际微生境,而ARC接种剂主要通过直接和群落介导的生物调节来改善根际微生境。它们的协同应用为改善南方酸性红壤土壤质量和提高花生产量提供了一条高效创新的策略。
{"title":"Synergistic regulation of calcium hydroxide and ARC microbial inoculant on rhizosphere microbiota and soil chemical properties during peanut middle growth stages in acidic red soils","authors":"Gongming Wu ,&nbsp;Hong Yu ,&nbsp;Ningbo Zeng ,&nbsp;Zinan Luo ,&nbsp;Sheng Gao ,&nbsp;Qi Liang ,&nbsp;Lin Li ,&nbsp;Peiwu Li ,&nbsp;Zemao Yang ,&nbsp;Dengwang Liu","doi":"10.1016/j.rhisph.2025.101238","DOIUrl":"10.1016/j.rhisph.2025.101238","url":null,"abstract":"<div><div>To address the high acidity and low fertility of acidic red soils in southern China, this study evaluated the effects of calcium hydroxide (Ca(OH)<sub>2</sub>) and the <em>Aspergillus</em>-Rhizobia Coupling (ARC) microbial inoculant on rhizosphere microbiota, soil chemical properties, and peanut <em>(Arachis hypogaea</em> L.) yield during the middle growth stage of peanuts (i.e., flowering-pegging and pod-setting stages). Calcium hydroxide modulated the rhizosphere microenvironment by increasing soil pH and exchangeable calcium, thereby enhancing microbial α-diversity, stimulating the metabolic activity of both ARC inoculant strains and native microbiota, and enriching carbon and nitrogen (C-N) cycling-related taxa (e.g., <em>Sphingomonas</em>), thus elevating soil organic matter and hydrolyzable nitrogen, and ultimately increasing peanut total pod weight per plant. Meanwhile, the ARC inoculant reshaped the rhizosphere microbial community structure without altering α-diversity, specifically enriching phosphorus and potassium (P-K) activation-related taxa (e.g., <em>Paraglomus</em>), thereby increasing soil available phosphorus and available potassium, and ultimately enhancing peanut total pods per plant. The combined application of these amendments exhibited obvious synergistic effects in the above aspects, with the Ca<sub>50</sub>A<sub>4</sub> treatment (750 kg/ha calcium hydroxide + 60 kg/ha ARC inoculant) achieving the greatest effects. Compared with the control (Ca<sub>0</sub>A<sub>0</sub>, CK), the total pods per plant and total pod weight per plant in the Ca<sub>50</sub>A<sub>4</sub> treatment were significantly increased by 57.14 % and 45.18 %, respectively. Overall, calcium hydroxide improved the rhizosphere microhabitat primarily through chemical regulation, whereas the ARC inoculant acted via direct and community-mediated biological regulation. Their synergistic application provides an efficient and innovative strategy for improving soil quality and enhancing peanut productivity in acidic red soil regions of southern China.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101238"},"PeriodicalIF":3.5,"publicationDate":"2025-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145694921","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clonal propagation of Mimosa caesalpiniifolia: Effects of phenotype, IBA, and leaf area reduction on rooting and plant propagation 含羞草无性系繁殖:表型、IBA和叶面积减少对植物生根和繁殖的影响
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-01 DOI: 10.1016/j.rhisph.2025.101232
Alvaro da Costa Freire , Elen Raquel Ferreira Maciel , Françóyse Dávilla de Souza Silva , Jayane Karine Pereira de Araújo , Brayan Paiva Cavalcante , Poliana Coqueiro Dias Araujo
Clonal propagation of Mimosa caesalpiniifolia is essential for multiplying prickleless phenotypes, which enhance silvicultural management and ecological restoration in the Caatinga biome. This study evaluated the effects of plant phenotype (prickly vs. prickleless), indole-3-butyric acid (IBA) concentration, and leaf area reduction on adventitious root formation in mini-cuttings. Three factorial experiments were conducted: (i) evaluation of clonal mini-garden performance across successive prunings; (ii) two phenotypes subjected to three IBA concentrations (0, 2000, and 4000 mg L−1); and (iii) two phenotypes under three levels of leaf area reduction (0 %, 50 %, and 100 %). A randomized block design was adopted, with three replicates and 15 propagules per plot. All mini-stumps survived, with no mortality recorded for either phenotype. Shoot productivity ranged from 156 to 280 shoots/m2 across five collections, and analysis of variance indicated no significant interaction between phenotype and collection number (p > 0.05). A significant interaction between phenotype and IBA was observed (p < 0.05). The prickleless phenotype showed the highest survival and rooting rates (≥80 %) with 2000 mg L−1 IBA, while the prickly phenotype rooted best without IBA, declining with higher auxin levels. Leaf area reduction had a marked effect (p < 0.0001): complete defoliation (100 %) severely impaired rooting and survival, whereas moderate reduction (50 %) enhanced physiological balance and rooting performance. In conclusion, mini-cutting propagation is an effective strategy for M. caesalpiniifolia, requiring phenotype-specific protocols. Exogenous IBA improves rooting in prickleless phenotypes, while prickly ones respond better without auxin application. A 50 % leaf reduction increases propagation efficiency and supports scalable clonal production of this species.
含羞草的无性系繁殖是实现无刺表型繁殖的必要条件,可提高Caatinga生物群系的造林管理和生态恢复。本研究评估了植物表型(多刺与无刺)、吲哚-3-丁酸(IBA)浓度和叶面积减少对小插条不定根形成的影响。进行了三因子试验:(1)评价连续修剪对无性系迷你园的影响;(ii)受三种IBA浓度(0,2000和4000 mg L−1)影响的两种表型;3个叶面积减少水平(0 %、50 %和100 %)下的2种表型。采用随机区组设计,3个重复,每个小区15个繁殖体。所有的小树桩都存活了下来,两种表型都没有死亡记录。5个采集区的芽产量在156 ~ 280枝/m2之间,方差分析表明表型与采集量之间无显著交互作用(p >; 0.05)。表型与IBA之间存在显著的交互作用(p <; 0.05)。当添加2000 mg L−1 IBA时,无刺表型的成活率和生根率最高(≥80 %),而不添加IBA时,多刺表型的生根效果最好,随着生长素水平的升高而下降。叶面积减少效果显著(p <; 0.0001):完全落叶(100 %)严重损害生根和存活,而中度落叶(50 %)增强生理平衡和生根性能。综上所述,小切割繁殖是一种有效的策略,需要表型特异性的方案。外源IBA促进无刺表型的生根,而有刺表型在不施用生长素的情况下反应更好。50% %的叶片减少增加了繁殖效率,并支持该物种可扩展的无性系生产。
{"title":"Clonal propagation of Mimosa caesalpiniifolia: Effects of phenotype, IBA, and leaf area reduction on rooting and plant propagation","authors":"Alvaro da Costa Freire ,&nbsp;Elen Raquel Ferreira Maciel ,&nbsp;Françóyse Dávilla de Souza Silva ,&nbsp;Jayane Karine Pereira de Araújo ,&nbsp;Brayan Paiva Cavalcante ,&nbsp;Poliana Coqueiro Dias Araujo","doi":"10.1016/j.rhisph.2025.101232","DOIUrl":"10.1016/j.rhisph.2025.101232","url":null,"abstract":"<div><div>Clonal propagation of <em>Mimosa caesalpiniifolia</em> is essential for multiplying prickleless phenotypes, which enhance silvicultural management and ecological restoration in the Caatinga biome. This study evaluated the effects of plant phenotype (prickly vs. prickleless), indole-3-butyric acid (IBA) concentration, and leaf area reduction on adventitious root formation in mini-cuttings. Three factorial experiments were conducted: (i) evaluation of clonal mini-garden performance across successive prunings; (ii) two phenotypes subjected to three IBA concentrations (0, 2000, and 4000 mg L<sup>−1</sup>); and (iii) two phenotypes under three levels of leaf area reduction (0 %, 50 %, and 100 %). A randomized block design was adopted, with three replicates and 15 propagules per plot. All mini-stumps survived, with no mortality recorded for either phenotype. Shoot productivity ranged from 156 to 280 shoots/m<sup>2</sup> across five collections, and analysis of variance indicated no significant interaction between phenotype and collection number (p &gt; 0.05). A significant interaction between phenotype and IBA was observed (p &lt; 0.05). The prickleless phenotype showed the highest survival and rooting rates (≥80 %) with 2000 mg L<sup>−1</sup> IBA, while the prickly phenotype rooted best without IBA, declining with higher auxin levels. Leaf area reduction had a marked effect (p &lt; 0.0001): complete defoliation (100 %) severely impaired rooting and survival, whereas moderate reduction (50 %) enhanced physiological balance and rooting performance. In conclusion, mini-cutting propagation is an effective strategy for <em>M. caesalpiniifolia</em>, requiring phenotype-specific protocols. Exogenous IBA improves rooting in prickleless phenotypes, while prickly ones respond better without auxin application. A 50 % leaf reduction increases propagation efficiency and supports scalable clonal production of this species.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101232"},"PeriodicalIF":3.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145693518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rhizosphere fungi mediated priming reinforces cellular and biochemical defenses against gummy stem blight in muskmelon 根际真菌介导的启动增强了甜瓜对粘茎枯萎病的细胞和生化防御
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-01 DOI: 10.1016/j.rhisph.2025.101236
Sindhu Geemarahalli Mahadevaswamy , Savitha De Britto , Praveen Satapute , Mostafa Abdelrahman , Lam-Son Phan Tran , Kazunori Sasaki , Kestur Nagaraj Amruthesh , Sudisha Jogaiah
Rhizosphere-associated fungi are recognized as a highly promising and sustainable approach for cultivating high-yielding disease-resistant crops. However, identifying beneficial rhizosphere fungi is a critical step toward achieving optimal protection. In this study, we evaluated 75 rhizosphere-associated fungi isolated from the rhizosphere soil of healthy native muskmelon (Cucumis melo) plants for their in vitro antagonistic activity against Stagonosporopsis cucurbitacearum, the pathogen causing gummy stem blight in muskmelon. Among the 75 isolates, three isolates, Asp-MRF54, Tri-MRF47, and Pen-MRF18, exhibited the highest inhibition rates of 81.9 %, 69.2 %, and 67.6 % respectively, against S. cucurbitacearum mycelial growth. Based on the ITS sequence, the three isolates were identified as Aspergillus niger (Asp-MRF54), Trichoderma virens (Tri-MRF47), and Penicillium italicum (Pen-MRF18). Furthermore, muskmelon seeds primed with Pen-MRF18 and Tri-MRF47 exhibited significantly higher germination rate of 86 % and 81 % and seedling vigor of 1987 and 1955, respectively. Pen-MRF18-primed plants exhibited significant growth improvements, with a 23.8 % increase in chlorophyll content and enhanced nutrient uptake, including nitrogen (33.8 %), phosphorus (42.2 %), and potassium (56.9 %), compared to Tri-MRF47-primed and untreated control plants. Additionally, Pen-MRF18-primed plants demonstrated the highest disease protection of 71.09 % against S. cucurbitacearum, followed by Tri-MRF47-treated plants with 77.5 % protection, compared to non-primed pathogen-inoculated plants. Furthermore, both Pen-MRF18 and Tri-MRF47 treatments induced a significant increase in the accumulation of callose, lignin, phenols, and hydrogen peroxide under both control and pathogen inoculation conditions, indicating an activated cellular defense response. In Pen-MRF18-treated plants challenged with a pathogen, enzymatic activities followed a consistent pattern, with phenylalanine ammonia-lyase and lipoxygenase peaking at 48 h, polyphenol oxidase at 24 h, and peroxidase at 12 h, compared with Tri-MRF47-treated plants. This study demonstrates that Pen-MRF18-primed muskmelon plants exhibit the highest resistance to S. cucurbitacearum infection, followed by those primed with Tri-MRF47, through the activation of integrated cellular, biochemical, and antioxidant defense pathways.
根际相关真菌被认为是培育高产抗病作物的一种非常有前途和可持续的方法。然而,确定有益的根际真菌是实现最佳保护的关键一步。在这项研究中,我们从健康的本土甜瓜根际土壤中分离了75种根际相关真菌,以评估它们对引起甜瓜粘茎枯萎病的病原菌——瓜螺孢子菌(Stagonosporopsis cucurbitacearum)的体外拮抗活性。其中,Asp-MRF54、Tri-MRF47和penn - mrf18对葫芦状葡萄球菌菌丝生长的抑制率最高,分别为81.9 %、69.2% %和67.6% %。经ITS序列鉴定,3株分离物分别为黑曲霉(Asp-MRF54)、绿木霉(Tri-MRF47)和意大利青霉(Pen-MRF18)。在1987年和1955年,用penm - mrf18和Tri-MRF47处理的甜瓜种子发芽率分别为86%和81%,幼苗活力显著提高。与tri - mrf47和未处理对照植株相比,经pen - mrf18处理的植株表现出显著的生长改善,叶绿素含量增加23.8%,氮(33.8%)、磷(42.2%)和钾(56.9%)的养分吸收量增加。此外,与未引物的病原菌接种植株相比,经penmrf18引物处理的植株对S. cucurbitacearum的保护率最高,为71.09%,其次是经tri - mrf47处理的植株,保护率为77.5% %。此外,在对照和病原菌接种条件下,Pen-MRF18和Tri-MRF47处理均诱导胼殖质、木质素、酚类物质和过氧化氢的积累显著增加,表明激活了细胞防御反应。与tri - mrf47处理的植株相比,经peni - mrf18处理的植株受到病原菌胁迫后,酶活性遵循一致的模式,苯丙氨酸解氨酶和脂氧合酶在48 h达到峰值,多酚氧化酶在24 h达到峰值,过氧化物酶在12 h达到峰值。本研究表明,通过激活细胞、生化和抗氧化综合防御途径,以pen - mrf18为引物的甜瓜植株对S. cucurbitacearum感染表现出最高的抗性,其次是Tri-MRF47引物的甜瓜植株。
{"title":"Rhizosphere fungi mediated priming reinforces cellular and biochemical defenses against gummy stem blight in muskmelon","authors":"Sindhu Geemarahalli Mahadevaswamy ,&nbsp;Savitha De Britto ,&nbsp;Praveen Satapute ,&nbsp;Mostafa Abdelrahman ,&nbsp;Lam-Son Phan Tran ,&nbsp;Kazunori Sasaki ,&nbsp;Kestur Nagaraj Amruthesh ,&nbsp;Sudisha Jogaiah","doi":"10.1016/j.rhisph.2025.101236","DOIUrl":"10.1016/j.rhisph.2025.101236","url":null,"abstract":"<div><div>Rhizosphere-associated fungi are recognized as a highly promising and sustainable approach for cultivating high-yielding disease-resistant crops. However, identifying beneficial rhizosphere fungi is a critical step toward achieving optimal protection. In this study, we evaluated 75 rhizosphere-associated fungi isolated from the rhizosphere soil of healthy native muskmelon (<em>Cucumis melo</em>) plants for their <em>in vitro</em> antagonistic activity against <em>Stagonosporopsis cucurbitacearum</em>, the pathogen causing gummy stem blight in muskmelon. Among the 75 isolates, three isolates, Asp-MRF54, Tri-MRF47, and Pen-MRF18, exhibited the highest inhibition rates of 81.9 %, 69.2 %, and 67.6 % respectively, against <em>S. cucurbitacearum</em> mycelial growth. Based on the ITS sequence, the three isolates were identified as <em>Aspergillus niger</em> (Asp-MRF54), <em>Trichoderma virens</em> (Tri-MRF47), and <em>Penicillium italicum</em> (Pen-MRF18). Furthermore, muskmelon seeds primed with Pen-MRF18 and Tri-MRF47 exhibited significantly higher germination rate of 86 % and 81 % and seedling vigor of 1987 and 1955, respectively. Pen-MRF18-primed plants exhibited significant growth improvements, with a 23.8 % increase in chlorophyll content and enhanced nutrient uptake, including nitrogen (33.8 %), phosphorus (42.2 %), and potassium (56.9 %), compared to Tri-MRF47-primed and untreated control plants. Additionally, Pen-MRF18-primed plants demonstrated the highest disease protection of 71.09 % against <em>S. cucurbitacearum</em>, followed by Tri-MRF47-treated plants with 77.5 % protection, compared to non-primed pathogen-inoculated plants. Furthermore, both Pen-MRF18 and Tri-MRF47 treatments induced a significant increase in the accumulation of callose, lignin, phenols, and hydrogen peroxide under both control and pathogen inoculation conditions, indicating an activated cellular defense response. In Pen-MRF18-treated plants challenged with a pathogen, enzymatic activities followed a consistent pattern, with phenylalanine ammonia-lyase and lipoxygenase peaking at 48 h, polyphenol oxidase at 24 h, and peroxidase at 12 h, compared with Tri-MRF47-treated plants. This study demonstrates that Pen-MRF18-primed muskmelon plants exhibit the highest resistance to <em>S. cucurbitacearum</em> infection, followed by those primed with Tri-MRF47, through the activation of integrated cellular, biochemical, and antioxidant defense pathways.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101236"},"PeriodicalIF":3.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145693517","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Soil–microbiome–plant interactions mediated by dark septate endophytes and extracellular polymeric substances drive ecological restoration in open-pit dumps 暗隔内生菌和胞外聚合物质介导的土壤-微生物-植物相互作用驱动露天垃圾场生态恢复
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-01 DOI: 10.1016/j.rhisph.2025.101225
Hai Tan , Yinli Bi , Shishuang Zhang , Jiapeng Kang , Kun Wang , Dongdong Wang
Ecological restoration in arid mining areas is hindered by severely degraded soil structure and disrupted nutrient cycling. Microbial mechanisms regulating rhizosphere processes remain underexplored. This study assessed the seasonal dynamics of rhizosphere microbial biomass and soil nutrients, along with the one-year effects of dark septate endophytes (DSE) and their extracellular polymeric substances (EPS) on microbial diversity, metabolism, and plant growth in open-pit dumps during early construction stages. After one year, the EPS treatment increased MBC, MBN, and MBP by 71.5 %, 54.1 %, and 55.7 %, respectively, compared to the control. Although DSE treatment alone also enhanced MBC, MBN, and MBP, its effects were generally less pronounced than EPS or ‘EPS + DSE’ treatment. Untargeted metabolomics revealed that lipid-derived compounds comprised over 50 % of differential metabolites and their concentration changes were significantly positively correlated with root biomass. Co-occurrence network analysis showed that EPS and ‘EPS + DSE’ treatments increased bacterial–bacterial edges by 19.24 % and 16.9 %, and bacterial–fungal edges by 49.65 % and 14.75 %, respectively, demonstrating a significant increase in microbial network complexity. Plant biomass increased by 2.18-, 1.93-, and 2.78-fold under EPS, DSE, and combined ‘EPS + DSE’ treatments, respectively, compared with the control, while the net photosynthetic rate increased by 1.86-, 1.20-, and 1.70-fold. These results demonstrate that soil–microbiome–plant interactions mediated by DSE and EPS drive ecological restoration in open-pit dumps, providing a targeted microbial approach for restoring degraded mining soils.
干旱矿区土壤结构严重退化,养分循环中断,阻碍了生态恢复。微生物调节根际过程的机制仍未得到充分探索。本研究评估了露天排土场根际微生物生物量和土壤养分的季节动态,以及暗隔内生菌(DSE)及其胞外聚合物(EPS)对露天排土场早期建设阶段微生物多样性、代谢和植物生长的影响。一年后,与对照组相比,EPS处理使MBC、MBN和MBP分别增加了71.5%、54.1%和55.7%。虽然单独DSE治疗也能增强MBC、MBN和MBP,但其效果通常不如EPS或“EPS + DSE”治疗明显。非靶向代谢组学显示,脂质衍生化合物占差异代谢物的50%以上,其浓度变化与根生物量呈显著正相关。共发生网络分析表明,EPS和“EPS + DSE”处理使细菌-细菌边缘分别增加了19.24%和16.9%,细菌-真菌边缘分别增加了49.65%和14.75%,表明微生物网络复杂性显著增加。与对照相比,EPS、DSE和“EPS + DSE”组合处理的植株生物量分别增加了2.18倍、1.93倍和2.78倍,净光合速率分别增加了1.86倍、1.20倍和1.70倍。这些结果表明,DSE和EPS介导的土壤-微生物组-植物相互作用驱动了露天排土场的生态恢复,为恢复退化的矿山土壤提供了有针对性的微生物途径。
{"title":"Soil–microbiome–plant interactions mediated by dark septate endophytes and extracellular polymeric substances drive ecological restoration in open-pit dumps","authors":"Hai Tan ,&nbsp;Yinli Bi ,&nbsp;Shishuang Zhang ,&nbsp;Jiapeng Kang ,&nbsp;Kun Wang ,&nbsp;Dongdong Wang","doi":"10.1016/j.rhisph.2025.101225","DOIUrl":"10.1016/j.rhisph.2025.101225","url":null,"abstract":"<div><div>Ecological restoration in arid mining areas is hindered by severely degraded soil structure and disrupted nutrient cycling. Microbial mechanisms regulating rhizosphere processes remain underexplored. This study assessed the seasonal dynamics of rhizosphere microbial biomass and soil nutrients, along with the one-year effects of dark septate endophytes (DSE) and their extracellular polymeric substances (EPS) on microbial diversity, metabolism, and plant growth in open-pit dumps during early construction stages. After one year, the EPS treatment increased MBC, MBN, and MBP by 71.5 %, 54.1 %, and 55.7 %, respectively, compared to the control. Although DSE treatment alone also enhanced MBC, MBN, and MBP, its effects were generally less pronounced than EPS or ‘EPS + DSE’ treatment. Untargeted metabolomics revealed that lipid-derived compounds comprised over 50 % of differential metabolites and their concentration changes were significantly positively correlated with root biomass. Co-occurrence network analysis showed that EPS and ‘EPS + DSE’ treatments increased bacterial–bacterial edges by 19.24 % and 16.9 %, and bacterial–fungal edges by 49.65 % and 14.75 %, respectively, demonstrating a significant increase in microbial network complexity. Plant biomass increased by 2.18-, 1.93-, and 2.78-fold under EPS, DSE, and combined ‘EPS + DSE’ treatments, respectively, compared with the control, while the net photosynthetic rate increased by 1.86-, 1.20-, and 1.70-fold. These results demonstrate that soil–microbiome–plant interactions mediated by DSE and EPS drive ecological restoration in open-pit dumps, providing a targeted microbial approach for restoring degraded mining soils.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101225"},"PeriodicalIF":3.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145623634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spatiotemporal analysis of root tissue composition indicates soil available Si, NH4+and NO3− predict ginseng nutraceutical quality 根系组织组成的时空分析表明,土壤有效硅、NH4+和NO3−可以预测人参的营养品质
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-01 DOI: 10.1016/j.rhisph.2025.101233
Zhefeng Xu , Yuqiu Chen , Yibing Wang , Jiahong Sui , Ruixue Yang , Yan Xue , Kemeng Zhang , Jing Fang , Qinghe Zhang , Changbao Chen , Tao Zhang
Ginseng has a wide range of medicinal and edible values, but the specificity of the accumulation of chemical constituents that affect the dual-use value of ginseng is not clear. In this study, We compared 1-year-old (G1), 2-year-old (G2), 3-year-old (G3) and 4-year-old (G4) field-cultivated ginseng to determine specific distribution of chemical constituents and endophytic enzymes in roots and five parts of roots (phloem, xylem, rhizome, lateral roots, and fibrous roots). Meanwhile, the rhizosphere soil properties were determined, and the differences and correlation of these factors were analyzed. We mainly found that the content of soil available silicon, ammonium nitrogen and nitrate nitrogen played a sustained and critical role in the tissue-specificity of ginsenosides. Then, we observed that ribonuclease and laccase in the soil mainly affected the tissue-specific distribution of endophytic enzymes during the first 2 years of ginseng growth. In addition, we found that the tissue-specific distribution of carbohydrate content in root was most influenced by endophytic enzymes. Finally, we constructed an ecological regulation network based on "chemical constituents - endophytic enzymes - soil properties". The results provided a new insight into the tissue-specific distribution of chemical constituents in roots.
人参具有广泛的药用和食用价值,但影响人参军民两用价值的化学成分积累的特异性尚不清楚。在这项研究中,我们比较了1岁(G1)、2岁(G2)、3岁(G3)和4岁(G4)的大田栽培人参,以确定根和根的五个部位(韧皮部、木质部、根茎、侧根和纤维根)的化学成分和内生酶的具体分布。同时测定了根际土壤性状,分析了各因子之间的差异和相关性。主要发现土壤有效硅、铵态氮和硝态氮含量对人参皂苷的组织特异性起着持续而关键的作用。然后,我们观察到土壤中的核糖核酸酶和漆酶主要影响人参生长前2年内生酶的组织特异性分布。此外,我们发现根系碳水化合物含量的组织特异性分布受内生酶的影响最大。最后,构建了基于“化学成分-内生酶-土壤性质”的生态调控网络。该结果为研究根中化学成分的组织特异性分布提供了新的视角。
{"title":"Spatiotemporal analysis of root tissue composition indicates soil available Si, NH4+and NO3− predict ginseng nutraceutical quality","authors":"Zhefeng Xu ,&nbsp;Yuqiu Chen ,&nbsp;Yibing Wang ,&nbsp;Jiahong Sui ,&nbsp;Ruixue Yang ,&nbsp;Yan Xue ,&nbsp;Kemeng Zhang ,&nbsp;Jing Fang ,&nbsp;Qinghe Zhang ,&nbsp;Changbao Chen ,&nbsp;Tao Zhang","doi":"10.1016/j.rhisph.2025.101233","DOIUrl":"10.1016/j.rhisph.2025.101233","url":null,"abstract":"<div><div>Ginseng has a wide range of medicinal and edible values, but the specificity of the accumulation of chemical constituents that affect the dual-use value of ginseng is not clear. In this study, We compared 1-year-old (G1), 2-year-old (G2), 3-year-old (G3) and 4-year-old (G4) field-cultivated ginseng to determine specific distribution of chemical constituents and endophytic enzymes in roots and five parts of roots (phloem, xylem, rhizome, lateral roots, and fibrous roots). Meanwhile, the rhizosphere soil properties were determined, and the differences and correlation of these factors were analyzed. We mainly found that the content of soil available silicon, ammonium nitrogen and nitrate nitrogen played a sustained and critical role in the tissue-specificity of ginsenosides. Then, we observed that ribonuclease and laccase in the soil mainly affected the tissue-specific distribution of endophytic enzymes during the first 2 years of ginseng growth. In addition, we found that the tissue-specific distribution of carbohydrate content in root was most influenced by endophytic enzymes. Finally, we constructed an ecological regulation network based on \"chemical constituents - endophytic enzymes - soil properties\". The results provided a new insight into the tissue-specific distribution of chemical constituents in roots.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"36 ","pages":"Article 101233"},"PeriodicalIF":3.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145693014","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rhizobacteria of native aquatic macrophytes in coal mining subsidence ponds are shaped by compartment niche differentiation 煤矿沉陷塘原生水生植物的根菌群是由隔间生态位分化形成的
IF 3.5 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-11-19 DOI: 10.1016/j.rhisph.2025.101235
Ting Gao , Songbao Feng , Sanping Yu , Xianyang Shi , Jin Cheng
Aquatic macrophytes have evolved adaptive mechanisms to thrive in the heterogeneous environments of coal mining subsidence areas. While such mechanisms provide practical solutions for ecological restoration in mining areas, general principles driving community assembly and the potential functions of bacterial microbiotas associated with these plants remain poorly characterized. In this study, we employed Illumina-based sequencing approaches to systematically characterize the bacterial microbiota in two root-associated compartments (rhizosphere and root endosphere) of four dominant macrophyte species (common reed, narrow-leaf cattail, short-lived flatsedge, and tuber bulrush) colonizing contrasting substrates (sediment and coal gangue). Our analyses revealed that the characteristics of root-associated bacterial communities were determined primarily by root compartment rather than by macrophyte species or plant habitat. Rhizospheric and root endophytic communities differed significantly in composition, network complexity, and keystone species, confirming a compartmentalized niche-assembly pattern. Functional predictions demonstrated metabolic niche partitioning between compartments, with distinct biogeochemical pathways enriched in each microenvironment. Specifically, rhizosphere communities were enriched in anaerobic respiration, nitrogen cycling, lignin degradation, and anoxygenic photosynthesis; meanwhile, endospheric microbiota were enriched in dark hydrogen oxidation, ureolysis, methylotrophy, and fumarate respiration. This study sheds new light on the assembly and functional roles of root-associated bacterial communities in coal mining subsidence ponds, supporting future ecological restoration efforts by identifying key functional bacteria.
水生植物已经进化出适应机制,在煤矿沉陷区异质环境中茁壮成长。虽然这些机制为矿区的生态恢复提供了切实可行的解决方案,但驱动群落组装的一般原理以及与这些植物相关的细菌微生物群的潜在功能仍不清楚。在这项研究中,我们采用基于illumina的测序方法,系统地表征了四种优势大型植物物种(芦苇、窄叶香蒲、短寿扁草和块茎芦苇)在两个根相关隔间(根际和根内圈)中定殖在不同基质(沉积物和煤矸石)中的细菌微生物群。我们的分析表明,根相关细菌群落的特征主要由根室决定,而不是由大型植物种类或植物栖息地决定。根际和根内生群落在组成、网络复杂性和关键物种方面存在显著差异,证实了分区的生态位组合模式。功能预测表明,在每个微环境中,不同的生物地球化学途径丰富的隔间之间的代谢生态位分配。具体而言,根际群落在厌氧呼吸、氮循环、木质素降解和无氧光合作用中富集;同时,在暗氢氧化、尿素溶解、甲基化和富马酸呼吸过程中,内圈微生物群富集。该研究揭示了煤矿沉陷池中与根相关的细菌群落的组成和功能作用,通过识别关键功能细菌,为未来的生态修复工作提供支持。
{"title":"Rhizobacteria of native aquatic macrophytes in coal mining subsidence ponds are shaped by compartment niche differentiation","authors":"Ting Gao ,&nbsp;Songbao Feng ,&nbsp;Sanping Yu ,&nbsp;Xianyang Shi ,&nbsp;Jin Cheng","doi":"10.1016/j.rhisph.2025.101235","DOIUrl":"10.1016/j.rhisph.2025.101235","url":null,"abstract":"<div><div>Aquatic macrophytes have evolved adaptive mechanisms to thrive in the heterogeneous environments of coal mining subsidence areas. While such mechanisms provide practical solutions for ecological restoration in mining areas, general principles driving community assembly and the potential functions of bacterial microbiotas associated with these plants remain poorly characterized. In this study, we employed Illumina-based sequencing approaches to systematically characterize the bacterial microbiota in two root-associated compartments (rhizosphere and root endosphere) of four dominant macrophyte species (common reed, narrow-leaf cattail, short-lived flatsedge, and tuber bulrush) colonizing contrasting substrates (sediment and coal gangue). Our analyses revealed that the characteristics of root-associated bacterial communities were determined primarily by root compartment rather than by macrophyte species or plant habitat. Rhizospheric and root endophytic communities differed significantly in composition, network complexity, and keystone species, confirming a compartmentalized niche-assembly pattern. Functional predictions demonstrated metabolic niche partitioning between compartments, with distinct biogeochemical pathways enriched in each microenvironment. Specifically, rhizosphere communities were enriched in anaerobic respiration, nitrogen cycling, lignin degradation, and anoxygenic photosynthesis; meanwhile, endospheric microbiota were enriched in dark hydrogen oxidation, ureolysis, methylotrophy, and fumarate respiration. This study sheds new light on the assembly and functional roles of root-associated bacterial communities in coal mining subsidence ponds, supporting future ecological restoration efforts by identifying key functional bacteria.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101235"},"PeriodicalIF":3.5,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145749558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Rhizosphere
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1