Pub Date : 2026-01-23DOI: 10.1016/j.rhisph.2026.101279
Thibault Sterckeman
Key mechanisms of iron uptake as highlighted by recent modelling works are reviewed. Calculations indicate that Fe2+ is often much more abundant than Fe3+ in soil solutions, contrarily to what is generally considered in the literature. However, mechanistic modelling of root Fe uptake shows that the concentrations of these ions are far below the levels required by plants. Furthermore, the acidification hypothetically triggered by iron deficiency is insufficient to increase their levels to the required extent. This confirms that AHA2, FRO2 and IRT1 evolved not only to process free ferric and ferrous ions, but also Fe-complexes with organic ligands. Numerical simulations show that aqueous dissociation of those Fe-complexes close to the root cell membrane is never quick enough to supply the root. Therefore, Fe complexes may dissociate at high speed after forming a transient ternary complex with a biotic ligand at the cell membrane near the AHA2-FRO2-IRT1 system. This catalyses Fe3+ reduction and internalisation of Fe2+. Moreover, a Fe ligand exuded by roots would be efficient only if it dissolves the soil iron hydroxides through a surface dissolution process much quicker than the aqueous dissolution. Simulations show that the mean concentration of Fe complexed by microbial siderophores in soils is sufficient to meet plant needs for iron, considering a moderate ‘shaping’ of the rhizosphere microflora and supposing that the roots are able to process the various types of complexes. Simulations also show that root absorption of intact Fe-complexes is as efficient as their processing by AHA2-FRO2-IRT1.
{"title":"Key processes of iron acquisition in strategy I plants: Assessment by mechanistic modelling","authors":"Thibault Sterckeman","doi":"10.1016/j.rhisph.2026.101279","DOIUrl":"10.1016/j.rhisph.2026.101279","url":null,"abstract":"<div><div>Key mechanisms of iron uptake as highlighted by recent modelling works are reviewed. Calculations indicate that Fe<sup>2+</sup> is often much more abundant than Fe<sup>3+</sup> in soil solutions, contrarily to what is generally considered in the literature. However, mechanistic modelling of root Fe uptake shows that the concentrations of these ions are far below the levels required by plants. Furthermore, the acidification hypothetically triggered by iron deficiency is insufficient to increase their levels to the required extent. This confirms that AHA2, FRO2 and IRT1 evolved not only to process free ferric and ferrous ions, but also Fe-complexes with organic ligands. Numerical simulations show that aqueous dissociation of those Fe-complexes close to the root cell membrane is never quick enough to supply the root. Therefore, Fe complexes may dissociate at high speed after forming a transient ternary complex with a biotic ligand at the cell membrane near the AHA2-FRO2-IRT1 system. This catalyses Fe<sup>3+</sup> reduction and internalisation of Fe<sup>2+</sup>. Moreover, a Fe ligand exuded by roots would be efficient only if it dissolves the soil iron hydroxides through a surface dissolution process much quicker than the aqueous dissolution. Simulations show that the mean concentration of Fe complexed by microbial siderophores in soils is sufficient to meet plant needs for iron, considering a moderate ‘shaping’ of the rhizosphere microflora and supposing that the roots are able to process the various types of complexes. Simulations also show that root absorption of intact Fe-complexes is as efficient as their processing by AHA2-FRO2-IRT1.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101279"},"PeriodicalIF":3.5,"publicationDate":"2026-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146188498","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-22DOI: 10.1016/j.rhisph.2026.101277
Wenxi Guan , Zhengze Chen , Jiarui Wang , Yanan Liu , Dazhuang Huang , Xiaoyun Niu
Phytoremediation is an eco-friendly and cost-effective method for remediating soils contaminated by heavy metals. However, research on the tolerance of woody lianas to cadmium (Cd) remains relatively limited. Therefore, this study selected six woody lianas—Wisteria sinensis, Parthenocissus tricuspidata, Campsis grandiflora, Periploca sepium, Lonicera japonica, and Ampelopsis humulifolia—and conducted pot experiments with Cd concentrations (0.78, 11.51, and 28.51 mg kg−1) to evaluate their physiological responses and tolerance to Cd stress. Results revealed significant variations in Cd stress tolerance among the species. Functional analysis indicated that W. sinensis displayed the highest overall resistance under elevated concentrations of Cd stress. The underlying mechanisms include: (1) sequestering 40 %∼60 % of Cd2+ in the cell wall; (2) the antioxidant enzyme system is markedly activated, with the activities of POD, CAT, and SOD increasing by 125.00 %, 325.00 %, and 57.79 %, respectively, to mitigate oxidative damage; (3) maintaining stable photosynthesis alongside a sharp increase in root nitrogen. Conversely, L. japonica adapted well to low Cd stress by enhancing soluble sugar content and shoot transport. Nonetheless, the accumulation coefficients of all the tested plants are relatively low. Specifically, for W. sinensis, these coefficients are 0.64 and 0.44 under low and high Cd treatments, respectively, indicating a considerable distance from hyperaccumulator status. In conclusion, while lacking strong accumulation, these lianas display distinct physiological adaptability. Their climbing growth and ornamental value make them suitable for ecological restoration and vertical greening in Cd-contaminated areas such as mines and urban outskirts.
{"title":"Wisteria sinensis and Lonicera japonica exhibit distinct cadmium tolerance mechanisms and potential for ecological restoration of cadmium-contaminated soils","authors":"Wenxi Guan , Zhengze Chen , Jiarui Wang , Yanan Liu , Dazhuang Huang , Xiaoyun Niu","doi":"10.1016/j.rhisph.2026.101277","DOIUrl":"10.1016/j.rhisph.2026.101277","url":null,"abstract":"<div><div>Phytoremediation is an eco-friendly and cost-effective method for remediating soils contaminated by heavy metals. However, research on the tolerance of woody lianas to cadmium (Cd) remains relatively limited. Therefore, this study selected six woody lianas—<em>Wisteria sinensis</em>, <em>Parthenocissus tricuspidata</em>, <em>Campsis grandiflora</em>, <em>Periploca sepium</em>, <em>Lonicera japonica</em>, and <em>Ampelopsis humulifolia</em>—and conducted pot experiments with Cd concentrations (0.78, 11.51, and 28.51 mg kg<sup>−1</sup>) to evaluate their physiological responses and tolerance to Cd stress. Results revealed significant variations in Cd stress tolerance among the species. Functional analysis indicated that <em>W. sinensis</em> displayed the highest overall resistance under elevated concentrations of Cd stress. The underlying mechanisms include: (1) sequestering 40 %∼60 % of Cd<sup>2+</sup> in the cell wall; (2) the antioxidant enzyme system is markedly activated, with the activities of POD, CAT, and SOD increasing by 125.00 %, 325.00 %, and 57.79 %, respectively, to mitigate oxidative damage; (3) maintaining stable photosynthesis alongside a sharp increase in root nitrogen. Conversely, <em>L. japonica</em> adapted well to low Cd stress by enhancing soluble sugar content and shoot transport. Nonetheless, the accumulation coefficients of all the tested plants are relatively low. Specifically, for <em>W. sinensis</em>, these coefficients are 0.64 and 0.44 under low and high Cd treatments, respectively, indicating a considerable distance from hyperaccumulator status. In conclusion, while lacking strong accumulation, these lianas display distinct physiological adaptability. Their climbing growth and ornamental value make them suitable for ecological restoration and vertical greening in Cd-contaminated areas such as mines and urban outskirts.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101277"},"PeriodicalIF":3.5,"publicationDate":"2026-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146188502","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-20DOI: 10.1016/j.rhisph.2026.101278
Luisa M. Manici , Alessandro Paletto , Francesco Caputo , Claudia Becagli , Isabella De Meo
Non-mycorrhizal root endophytes often exist as harmless commensals but can turn pathogenic under host stress or aging. This study applies this behaviour to assess the health of a long-term Pinus nigra stand by analysing its fungal endophyte communities. A total of 744 fungal isolates were obtained from healthy feeder roots using culture-based methods in a pilot area of long-established black pine stands in southern Europe. They were identified on morphological traits and nucleotide sequencing in the ITS and histone-3 regions. The Dominance (64 %) of three potentially pathogenic species out of a total of 23 identified, i.e. Dactylonectria torresensis, Diaporthe columnaris and Biscogniauxia mediterranea indicated general declining tree health and compromised tree vigor.
There was no significant difference in fungal α-diversity between the two thinning techniques implemented eight years earlier, which had different impacts on wood biomass production and reforestation with native species. Conversely, significant changes in fungal species composition were observed primarily affecting the relative abundance of Diaporthe spp. and Cylindrocarpon-like fungi. Diaporthe spp. significantly increased under the innovative selective thinning which resulted in an improvement of biomass production as compared to traditional thinning techniques which increased Cylindrocarpon-like fungi. Conversely, Xylariaceae (B. mediterranea), dark septate fungi (Cadophora sp., Didymella aeria and other 5 species), and mitosporic fungi (mainly Penicillium, Trichoderma, and Fusarium spp.) were unaffected by management and showed similar frequencies across treatments.
Overall, non-mycorrhizal root endophytes proved to be sensitive ecological indicators of forest health and management-driven changes offering valuable insights into the mechanisms that support pine forest health.
{"title":"Linking root fungal endophytes to forest decline and management regimes in long-established Black pine stands","authors":"Luisa M. Manici , Alessandro Paletto , Francesco Caputo , Claudia Becagli , Isabella De Meo","doi":"10.1016/j.rhisph.2026.101278","DOIUrl":"10.1016/j.rhisph.2026.101278","url":null,"abstract":"<div><div>Non-mycorrhizal root endophytes often exist as harmless commensals but can turn pathogenic under host stress or aging. This study applies this behaviour to assess the health of a long-term <em>Pinus nigra</em> stand by analysing its fungal endophyte communities. A total of 744 fungal isolates were obtained from healthy feeder roots using culture-based methods in a pilot area of long-established black pine stands in southern Europe. They were identified on morphological traits and nucleotide sequencing in the ITS and histone-3 regions. The Dominance (64 %) of three potentially pathogenic species out of a total of 23 identified, i.e. <em>Dactylonectria torresensis</em>, <em>Diaporthe columnaris</em> and <em>Biscogniauxia mediterranea</em> indicated general declining tree health and compromised tree vigor.</div><div>There was no significant difference in fungal α-diversity between the two thinning techniques implemented eight years earlier, which had different impacts on wood biomass production and reforestation with native species. Conversely, significant changes in fungal species composition were observed primarily affecting the relative abundance of Diaporthe spp. and Cylindrocarpon-like fungi. Diaporthe spp. significantly increased under the innovative selective thinning which resulted in an improvement of biomass production as compared to traditional thinning techniques which increased Cylindrocarpon-like fungi. Conversely, <em>Xylariaceae (B</em>. <em>mediterranea)</em>, dark septate fungi (<em>Cadophora</em> sp., <em>Didymella aeria</em> and other 5 species), and mitosporic fungi (mainly <em>Penicillium</em>, <em>Trichoderma</em>, and <em>Fusarium</em> spp.) were unaffected by management and showed similar frequencies across treatments.</div><div>Overall, non-mycorrhizal root endophytes proved to be sensitive ecological indicators of forest health and management-driven changes offering valuable insights into the mechanisms that support pine forest health.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101278"},"PeriodicalIF":3.5,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146077810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-17DOI: 10.1016/j.rhisph.2026.101274
Eduarda Lins Falcão , João Gabriel Lira de Carvalho , Jackson Roberto Guedes da Silva Almeida , Qiang-Sheng Wu , Fábio Sérgio Barbosa da Silva
The use of arbuscular mycorrhizal fungi (AMF) has been recognized as an effective strategy to increase the accumulation of plant secondary metabolites. However, the role of this approach in promoting saponin production, molecules with broad applications across various industrial sectors, has received limited attention. Thus, this opinion paper aimed to synthesize studies that have investigated AMF inoculation to improve saponin accumulation. Thirty-five relevant publications on this topic were selected and their key findings were highlighted, such as the most frequently studied plant and AMF genera, and whether bioactivities were evaluated. The results underscore the potential of AMF in saponin biosynthesis, while also identifying research gaps that need to be addressed to enable large-scale application of this technology.
{"title":"An overlooked synergy: arbuscular mycorrhizal fungi and increased accumulation of plant saponins","authors":"Eduarda Lins Falcão , João Gabriel Lira de Carvalho , Jackson Roberto Guedes da Silva Almeida , Qiang-Sheng Wu , Fábio Sérgio Barbosa da Silva","doi":"10.1016/j.rhisph.2026.101274","DOIUrl":"10.1016/j.rhisph.2026.101274","url":null,"abstract":"<div><div>The use of arbuscular mycorrhizal fungi (AMF) has been recognized as an effective strategy to increase the accumulation of plant secondary metabolites. However, the role of this approach in promoting saponin production, molecules with broad applications across various industrial sectors, has received limited attention. Thus, this opinion paper aimed to synthesize studies that have investigated AMF inoculation to improve saponin accumulation. Thirty-five relevant publications on this topic were selected and their key findings were highlighted, such as the most frequently studied plant and AMF genera, and whether bioactivities were evaluated. The results underscore the potential of AMF in saponin biosynthesis, while also identifying research gaps that need to be addressed to enable large-scale application of this technology.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101274"},"PeriodicalIF":3.5,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146037967","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-17DOI: 10.1016/j.rhisph.2026.101276
K.A. Wafha , K. Devika Raj , Anas Abdulaziz , Baby Divya
The diverse bacterial community present in various compartments of the mangrove, including, rhizosphere, rhizoplane, phyllosphere and endosphere, reflects a vital ecological function necessary for thriving in conditions characterised by high salinity, tidal fluctuations, and waterlogging. This study employed 16S rRNA gene amplicon sequencing (metabarcoding) using the Illumina high-throughput sequencing technology for the comprehensive analysis of bacterial diversity and its ecosystem functioning within the rhizosphere compartment (RC) and root endophytic compartment (EC) of the salt-tolerant mangrove species Rhizophora apiculata. This study revealed significantly higher bacterial diversity in the RC compared to that found in the EC, as assessed by both α-diversity and β-diversity metrices. The taxonomic analysis identified a total of 58 bacterial phyla, belonging to 163 classes, 419 orders, 672 families, 1187 genera and 2559 species in both the compartments. The five predominant bacterial phyla identified were Proteobacteria, Acidobacteriota, Bacteroidota, Patescibacteria and Desulfobacteriota. Among these phyla, Proteobacteria were the most abundant in both RC and EC, followed by Desulfobacteriota in the EC and Acidobacteriota in the RC. Furthermore, a core set of abundant bacterial genera was observed in both the endophytic and rhizospheric communities. These genera hitherto play essential roles in nutrient cycling, pollutant degradation and the maintenance of ecosystem stability. The dominant genera were Sulfurifustis, Spirochaeta, Novosphingobium, Candidatus Moranbacteria, Lacunisphaera, Candidatus Kaiserbacteria, Ignavibacterium, Dongia and Candidatus sp. Computational predictions indicated that the metabolic versatility associated with the functional genes included cellular processes, nutrient metabolism and genetic information processing. Endosphere associated bacteria are linked to s adaptive microbial strategies whereas rhizosphere communities drive organic matter turn over, redox regulation and environmental buffering. This study explores the complexassociation between Rhizophora apiculata and its associated bacteriome and offers valuable insights into this relationship.
{"title":"Comparative taxonomic and functional profiling of rhizosphere and root endophytic bacterial communities in the mangrove Rhizophora apiculata","authors":"K.A. Wafha , K. Devika Raj , Anas Abdulaziz , Baby Divya","doi":"10.1016/j.rhisph.2026.101276","DOIUrl":"10.1016/j.rhisph.2026.101276","url":null,"abstract":"<div><div>The diverse bacterial community present in various compartments of the mangrove, including, rhizosphere, rhizoplane, phyllosphere and endosphere, reflects a vital ecological function necessary for thriving in conditions characterised by high salinity, tidal fluctuations, and waterlogging. This study employed 16S rRNA gene amplicon sequencing (metabarcoding) using the Illumina high-throughput sequencing technology for the comprehensive analysis of bacterial diversity and its ecosystem functioning within the rhizosphere compartment (RC) and root endophytic compartment (EC) of the salt-tolerant mangrove species <em>Rhizophora apiculata</em>. This study revealed significantly higher bacterial diversity in the RC compared to that found in the EC, as assessed by both α-diversity and β-diversity metrices. The taxonomic analysis identified a total of 58 bacterial phyla, belonging to 163 classes, 419 orders, 672 families, 1187 genera and 2559 species in both the compartments. The five predominant bacterial phyla identified were Proteobacteria, Acidobacteriota, Bacteroidota, Patescibacteria and Desulfobacteriota. Among these phyla, Proteobacteria were the most abundant in both RC and EC, followed by Desulfobacteriota in the EC and Acidobacteriota in the RC. Furthermore, a core set of abundant bacterial genera was observed in both the endophytic and rhizospheric communities. These genera hitherto play essential roles in nutrient cycling, pollutant degradation and the maintenance of ecosystem stability. The dominant genera were <em>Sulfurifustis</em>, <em>Spirochaeta</em>, <em>Novosphingobium</em>, <em>Candidatus Moranbacteria</em>, <em>Lacunisphaera</em>, <em>Candidatus Kaiserbacteria</em>, <em>Ignavibacterium</em>, <em>Dongia</em> and <em>Candidatus</em> sp. Computational predictions indicated that the metabolic versatility associated with the functional genes included cellular processes, nutrient metabolism and genetic information processing. Endosphere associated bacteria are linked to s adaptive microbial strategies whereas rhizosphere communities drive organic matter turn over, redox regulation and environmental buffering. This study explores the complexassociation between <em>Rhizophora apiculata</em> and its associated bacteriome and offers valuable insights into this relationship.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101276"},"PeriodicalIF":3.5,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146037966","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ganoderma lucidum is a valuable medicinal mushroom used extensively in traditional medicine and modern health industries. Continuous cropping often alters soil microbial communities, leading to continuous cropping obstacles that limit sustainable production. Although fungal diversity has been extensively studied, bacterial dynamics and their functional roles remain less understood. Here, we combined bacterial isolation and identification, third-generation full-length 16S rDNA amplicon sequencing, and confrontation assays to systematically investigate soil bacterial communities before and after G. lucidum cultivation. Significant changes in microbial richness, diversity, and composition were observed with notable shifts in Proteobacteria, Firmicutes, and Acidobacteria. Importantly, we identified key bacterial species, including Bacillus velezensis, B. subtilis, B. amyloliquefaciens, Streptoverticillium reticulum, and Paenibacillus mucilaginosus, that strongly inhibited G. lucidum mycelial growth, highlighting their potential role in continuous cropping obstacles. This study provides the first integrative framework linking species-level bacterial dynamics to continuous cropping barriers in G. lucidum, offering a theoretical basis for targeted microbial management in sustainable cultivation.
{"title":"Continuous cropping obstacle in Ganoderma lucidum is driven by antagonistic bacterial enrichment and soil bacterial community imbalance","authors":"Xiaomeng Lv, Xiaofang He, Yuting Zhuang, Jinxiang Zhang, Jianhui Chen, Ying Zhou, Senxiang Xie, Lixin Liang, Liping Deng, Xiaoping Wu","doi":"10.1016/j.rhisph.2026.101267","DOIUrl":"10.1016/j.rhisph.2026.101267","url":null,"abstract":"<div><div><em>Ganoderma lucidum</em> is a valuable medicinal mushroom used extensively in traditional medicine and modern health industries. Continuous cropping often alters soil microbial communities, leading to continuous cropping obstacles that limit sustainable production. Although fungal diversity has been extensively studied, bacterial dynamics and their functional roles remain less understood. Here, we combined bacterial isolation and identification, third-generation full-length 16S rDNA amplicon sequencing, and confrontation assays to systematically investigate soil bacterial communities before and after <em>G. lucidum</em> cultivation. Significant changes in microbial richness, diversity, and composition were observed with notable shifts in Proteobacteria, Firmicutes, and Acidobacteria. Importantly, we identified key bacterial species, including <em>Bacillus velezensis</em>, <em>B. subtilis</em>, <em>B. amyloliquefaciens</em>, <em>Streptoverticillium reticulum</em>, and <em>Paenibacillus mucilaginosus</em>, that strongly inhibited <em>G. lucidum</em> mycelial growth, highlighting their potential role in continuous cropping obstacles. This study provides the first integrative framework linking species-level bacterial dynamics to continuous cropping barriers in <em>G. lucidum</em>, offering a theoretical basis for targeted microbial management in sustainable cultivation.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101267"},"PeriodicalIF":3.5,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146037896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-16DOI: 10.1016/j.rhisph.2026.101275
Zhiliang Ma, Yamei Chen, Wenjuan Xu
Alpine shrub expansion restructures plant communities and soil biogeochemistry on the Qinghai-Tibetan Plateau, but how contrasting plant coexistence patterns (shrub-conifer vs. mixed shrubs) shape microbial metabolic limitation across bulk/rhizosphere soils and soil layers remains unresolved—limiting predictions of ecosystem responses to vegetation shifts. We quantified microbial metabolic limitation via extracellular enzyme stoichiometry and vector properties in bulk/rhizosphere soils (organic/mineral layers) of expanding Salix oritrepha shrubs under three coexistence patterns: pure stands, coexistence with Picea likiangensis (shrub-conifer), or Sibiraea angustata (mixed shrubs). Our key findings reveal that microbial communities in S. oritrepha soils were primarily C- and P-limited, with coexisting plants identity driving divergent limitation patterns: relative to pure stands, conifer coexistence (P. likiangensis) consistently alleviated C limitation across all soils and layers, whereas mixed shrub coexistence (S. angustata) intensified C limitation (except for an alleviating effect in the mineral-layer rhizosphere). For P limitation, conifer coexistence strengthened limitation only in bulk soil, while mixed shrub coexistence primarily amplified P limitation in the rhizosphere. Soil moisture emerged as the dominant driver: it correlated positively with C limitation and negatively with P limitation. These results demonstrate that coexisting plants determines the direction and compartment-specificity of microbial resource limitation under shrub expansion—providing a functional framework to predict soil biogeochemical responses to alpine vegetation shifts, with critical implications for ecosystem management under global change.
{"title":"Plant coexistence shapes microbial carbon and phosphorus limitations in soils of expanding alpine shrubs","authors":"Zhiliang Ma, Yamei Chen, Wenjuan Xu","doi":"10.1016/j.rhisph.2026.101275","DOIUrl":"10.1016/j.rhisph.2026.101275","url":null,"abstract":"<div><div>Alpine shrub expansion restructures plant communities and soil biogeochemistry on the Qinghai-Tibetan Plateau, but how contrasting plant coexistence patterns (shrub-conifer vs. mixed shrubs) shape microbial metabolic limitation across bulk/rhizosphere soils and soil layers remains unresolved—limiting predictions of ecosystem responses to vegetation shifts. We quantified microbial metabolic limitation via extracellular enzyme stoichiometry and vector properties in bulk/rhizosphere soils (organic/mineral layers) of expanding <em>Salix oritrepha</em> shrubs under three coexistence patterns: pure stands, coexistence with <em>Picea likiangensis</em> (shrub-conifer), or <em>Sibiraea angustata</em> (mixed shrubs). Our key findings reveal that microbial communities in <em>S. oritrepha</em> soils were primarily C- and P-limited, with coexisting plants identity driving divergent limitation patterns: relative to pure stands, conifer coexistence (<em>P. likiangensis</em>) consistently alleviated C limitation across all soils and layers, whereas mixed shrub coexistence (<em>S. angustata</em>) intensified C limitation (except for an alleviating effect in the mineral-layer rhizosphere). For P limitation, conifer coexistence strengthened limitation only in bulk soil, while mixed shrub coexistence primarily amplified P limitation in the rhizosphere. Soil moisture emerged as the dominant driver: it correlated positively with C limitation and negatively with P limitation. These results demonstrate that coexisting plants determines the direction and compartment-specificity of microbial resource limitation under shrub expansion—providing a functional framework to predict soil biogeochemical responses to alpine vegetation shifts, with critical implications for ecosystem management under global change.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101275"},"PeriodicalIF":3.5,"publicationDate":"2026-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146037968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1016/j.rhisph.2026.101268
Gun Mo Kim , Suejin Park , Seung Youn Lee
Berberis amurensis Rupr. is a pollinator-supporting shrub valued for its medicinal and ornamental traits; however, practical propagation is limited due to slow seed germination and a lack of vegetative propagation methods. This study investigated the impact of cutting season, auxin concentration, and cutting type on the adventitious rooting of stem cuttings. Hardwood cutting rooted in May showed higher survival, rooting percentage, and root system development than those rooted in August, and potassium indole-3-butyric acid at 500–1000 mg L−1 increased root biomass and root number in May. In August, greenwood cuttings rooted and survived better than hardwood cuttings, even without auxin treatment. Anatomical observations confirmed that the adventitious root originated from the cambial zone and reconnected with the stem vascular tissues. These findings establish simple and season-specific protocols for the clonal propagation of B. amurensis for ex situ conservation and horticultural use.
{"title":"Season-specific cutting strategies enable efficient clonal propagation of Berberis amurensis Rupr","authors":"Gun Mo Kim , Suejin Park , Seung Youn Lee","doi":"10.1016/j.rhisph.2026.101268","DOIUrl":"10.1016/j.rhisph.2026.101268","url":null,"abstract":"<div><div><em>Berberis amurensis</em> Rupr. is a pollinator-supporting shrub valued for its medicinal and ornamental traits; however, practical propagation is limited due to slow seed germination and a lack of vegetative propagation methods. This study investigated the impact of cutting season, auxin concentration, and cutting type on the adventitious rooting of stem cuttings. Hardwood cutting rooted in May showed higher survival, rooting percentage, and root system development than those rooted in August, and potassium indole-3-butyric acid at 500–1000 mg L<sup>−1</sup> increased root biomass and root number in May. In August, greenwood cuttings rooted and survived better than hardwood cuttings, even without auxin treatment. Anatomical observations confirmed that the adventitious root originated from the cambial zone and reconnected with the stem vascular tissues. These findings establish simple and season-specific protocols for the clonal propagation of <em>B. amurensis</em> for ex situ conservation and horticultural use.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101268"},"PeriodicalIF":3.5,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145977510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1016/j.rhisph.2025.101237
Simeng Zhao , Liwei Wang , Chao Li , Zhangxin Hou , Xinping Yang , Hongyan Yang
Fusarium oxysporum-induced Panax ginseng root rot is a devastating disease. The development of effective biocontrol agents is therefore crucial. This study isolated Trichoderma velutinum YW411 from ginseng rhizosphere soil and evaluated its biocontrol efficacy alone and in combination with Penicillium citrinum YW322. Pot experiments demonstrated that single inoculation with T. velutinum significantly inhibited root rot and promoted plant growth. The strain produced siderophores, indole-3-acetic acid, protease, and cellulase, but lacked 1-aminocyclopropane-1-carboxylate deaminase and phosphate-solubilizing capacity. Soil pH, total potassium and the activity of the defense-related enzyme lipoxygenase were significantly higher in the T. velutinum-only treatment compared to the co-inoculation treatment. Co-inoculation with P. citrinum altered microbial communities but diminished disease resistance. In vitro assays revealed that T. velutinum growth was inhibited by lipopeptides and other compounds secreted by P. citrinum, thereby reducing the ability of the ginseng rhizosphere biocontrol system with T. velutinum to suppress F. oxysporum spore germination and biomass. These results indicate that T. velutinum YW411 is a promising biocontrol and growth-promoting agent via direct pathogen inhibition, host resistance induction, and rhizosphere environment regulation, but it is incompatible with P. citrinum YW322.
{"title":"A new strain of Trichoderma shows improved biocontrol of Fusarium root rot in ginseng via functional metabolites, defense induction and rhizosphere regulation","authors":"Simeng Zhao , Liwei Wang , Chao Li , Zhangxin Hou , Xinping Yang , Hongyan Yang","doi":"10.1016/j.rhisph.2025.101237","DOIUrl":"10.1016/j.rhisph.2025.101237","url":null,"abstract":"<div><div><em>Fusarium oxysporum</em>-induced <em>Panax ginseng</em> root rot is a devastating disease. The development of effective biocontrol agents is therefore crucial. This study isolated <em>Trichoderma velutinum</em> YW411 from ginseng rhizosphere soil and evaluated its biocontrol efficacy alone and in combination with <em>Penicillium citrinum</em> YW322. Pot experiments demonstrated that single inoculation with <em>T. velutinum</em> significantly inhibited root rot and promoted plant growth. The strain produced siderophores, indole-3-acetic acid, protease, and cellulase, but lacked 1-aminocyclopropane-1-carboxylate deaminase and phosphate-solubilizing capacity. Soil pH, total potassium and the activity of the defense-related enzyme lipoxygenase were significantly higher in the <em>T. velutinum</em>-only treatment compared to the co-inoculation treatment. Co-inoculation with <em>P. citrinum</em> altered microbial communities but diminished disease resistance. <em>In vitro</em> assays revealed that <em>T. velutinum</em> growth was inhibited by lipopeptides and other compounds secreted by <em>P. citrinum</em>, thereby reducing the ability of the ginseng rhizosphere biocontrol system with <em>T. velutinum</em> to suppress <em>F. oxysporum</em> spore germination and biomass. These results indicate that <em>T. velutinum</em> YW411 is a promising biocontrol and growth-promoting agent via direct pathogen inhibition, host resistance induction, and rhizosphere environment regulation, but it is incompatible with <em>P. citrinum</em> YW322.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101237"},"PeriodicalIF":3.5,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145977512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-10DOI: 10.1016/j.rhisph.2026.101266
Lin Zhang , Yuqiang Wen , Mengmeng Zhang , Kun Li , Ruotong Wu , Ning Sun , Fuqiang Song , Tianle Xu
Arbuscular mycorrhizal (AM) fungi are vital plant symbionts in terrestrial ecosystems, yet their community distribution patterns and key drivers in extreme environments remain elusive. Focusing on the unique soda saline-alkaline meadows in the cold region of Northeast China, we established six sampling sites along a 500-km climatic gradient. By integrating traditional microscopic techniques with high-throughput sequencing, we systematically characterized the spatial distribution and drivers of soil AM fungal communities under severe saline-alkaline stress. Results indicated that under saline-alkaline stress, abiotic variables overrode host preferences to dominate community structuring. Specifically, high pH significantly suppressed root colonization and extraradical mycelial density, and significantly reduced soil AM fungal Shannon diversity. Nitrate nitrogen (NO3−-N) acted as a critical "diversity filter," showing a significant negative correlation with species richness and phylogenetic diversity. Conversely, soil organic carbon (SOC), total nitrogen (TN), and regional climate synergistically drove community composition divergence. Crucially, the lack of significant correlation between soil AM fungal and plant communities confirmed the primacy of abiotic filtering in these extreme habitats. Further analysis revealed divergent ecological strategies: Regional climate potentially regulated the abundance of the dominant genera Glomus and Scutellospora, whereas Rhizophagus was driven by local nutrient-rich micro-niches (SOC and ammonium nitrogen) and closely associated with plant productivity. This study identifies severe soil abiotic stress as the core driver shaping AM fungal spatial patterns in cold saline-alkaline meadows. These findings deepen our understanding of microbial distribution in stressed habitats and offer critical scientific insights for the restoration of fragile saline-alkaline ecosystems.
{"title":"The key predictive factors of arbuscular mycorrhizal fungi community spatial distribution in saline-alkaline meadow soils: Abiotic variables or hosts?","authors":"Lin Zhang , Yuqiang Wen , Mengmeng Zhang , Kun Li , Ruotong Wu , Ning Sun , Fuqiang Song , Tianle Xu","doi":"10.1016/j.rhisph.2026.101266","DOIUrl":"10.1016/j.rhisph.2026.101266","url":null,"abstract":"<div><div>Arbuscular mycorrhizal (AM) fungi are vital plant symbionts in terrestrial ecosystems, yet their community distribution patterns and key drivers in extreme environments remain elusive. Focusing on the unique soda saline-alkaline meadows in the cold region of Northeast China, we established six sampling sites along a 500-km climatic gradient. By integrating traditional microscopic techniques with high-throughput sequencing, we systematically characterized the spatial distribution and drivers of soil AM fungal communities under severe saline-alkaline stress. Results indicated that under saline-alkaline stress, abiotic variables overrode host preferences to dominate community structuring. Specifically, high pH significantly suppressed root colonization and extraradical mycelial density, and significantly reduced soil AM fungal Shannon diversity. Nitrate nitrogen (NO<sub>3</sub><sup>−</sup>-N) acted as a critical \"diversity filter,\" showing a significant negative correlation with species richness and phylogenetic diversity. Conversely, soil organic carbon (SOC), total nitrogen (TN), and regional climate synergistically drove community composition divergence. Crucially, the lack of significant correlation between soil AM fungal and plant communities confirmed the primacy of abiotic filtering in these extreme habitats. Further analysis revealed divergent ecological strategies: Regional climate potentially regulated the abundance of the dominant genera <em>Glomus</em> and <em>Scutellospora</em>, whereas <em>Rhizophagus</em> was driven by local nutrient-rich micro-niches (SOC and ammonium nitrogen) and closely associated with plant productivity. This study identifies severe soil abiotic stress as the core driver shaping AM fungal spatial patterns in cold saline-alkaline meadows. These findings deepen our understanding of microbial distribution in stressed habitats and offer critical scientific insights for the restoration of fragile saline-alkaline ecosystems.</div></div>","PeriodicalId":48589,"journal":{"name":"Rhizosphere","volume":"37 ","pages":"Article 101266"},"PeriodicalIF":3.5,"publicationDate":"2026-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145977513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}