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Are High Levels of Microsatellite Instability and Microsatellite Stability Identical in DNA Mismatch Repair-Deficient Colorectal Cancer Patients? 高水平的微卫星不稳定性和微卫星稳定性在DNA错配修复缺陷的结直肠癌患者中是相同的吗?
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2023-01-01 DOI: 10.1155/2023/8370262
Yan-Yu Qiu, Yi-Xin Zeng, Yong Cheng

Purpose: The purpose of the current study was to determine whether there is a difference between high levels of microsatellite instability (MSI-H) and microsatellite stability (MSS) in DNA mismatch repair-deficient (DMMR) colorectal cancer (CRC) patients.

Methods: A total of 452 CRC patients with DMMR from December, 2014, to April, 2021, in our hospital were selected retrospectively. However, only 105 patients underwent Sanger or next-generation-sequencing (NGS) to confirm their microsatellite status. Ultimately, 55 MSI-H patients and 20 MSS patients with intact medical record information were included in this study.

Results: The MSS group was associated with a higher mutation rate in the KRAS gene (P=0.011). Meanwhile, MSI-H was related to colon cancer (P < 0.01). However, no significant differences in other clinical characteristics were observed between the two groups of patients. There was no significant difference between the MSI-H and MSS groups in terms of overall survival (OS) (P=0.398) and disease-free survival (DFS) (P=0.307).

Conclusion: The MSI-H status was associated with colon cancer and a lower mutation rate of the KRAS gene in DMMR patients. In CRC-DMMR patients, the MSS group exhibited better OS and DFS than the MSI-H group, although these differences were not statistically significant. Accordingly, in clinical practice, we should not confuse these two types of patients.

目的:本研究的目的是确定DNA错配修复缺陷(DMMR)结直肠癌(CRC)患者中高水平的微卫星不稳定性(MSI-H)和微卫星稳定性(MSS)之间是否存在差异。方法:回顾性选择2014年12月至2021年4月在我院收治的452例大肠癌DMMR患者。然而,只有105名患者接受了Sanger或下一代测序(NGS)来确认他们的微卫星状态。最终,55例MSI-H患者和20例病历信息完整的MSS患者被纳入本研究。结果:MSS组KRAS基因突变率较高(P=0.011)。MSI-H与结肠癌相关(P < 0.01)。然而,两组患者在其他临床特征上无显著差异。MSI-H组与MSS组在总生存期(OS) (P=0.398)和无病生存期(DFS) (P=0.307)方面无显著差异。结论:DMMR患者MSI-H状态与结肠癌相关,KRAS基因突变率较低。在CRC-DMMR患者中,MSS组比MSI-H组表现出更好的OS和DFS,尽管这些差异无统计学意义。因此,在临床实践中,我们不应混淆这两类患者。
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引用次数: 0
Higher Neutrophil-to-Lymphocyte Ratio (NLR) Is a Preoperative Inflammation Biomarker of Poor Prognosis in HIV-Infected Patients with Colorectal Cancer: A Retrospective Study. 高中性粒细胞/淋巴细胞比率(NLR)是hiv感染结直肠癌患者预后不良的术前炎症生物标志物:一项回顾性研究
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2023-01-01 DOI: 10.1155/2023/7966625
Li Deng, Yanhui Si, Qian Wu, Ye Cao, Shixian Lian, Lei Li

Background: The serum systemic inflammation biomarkers are known predictors of colorectal cancer (CRC) patient prognosis. However, their significance in human immunodeficiency virus (HIV)-infected patients with CRC has not been studied. To address this gap, we conducted a retrospective study to evaluate the prognostic value of preoperative systemic inflammation biomarkers in HIV-infected patients with CRC.

Methods: The study enrolled 57 patients with colorectal cancer (CRC) and HIV who underwent surgery at the Shanghai Public Health Clinical Center between January 2015 and December 2021. Preoperative tests were conducted, and systemic inflammation biomarkers were measured. The patients were categorized into two groups using the optimal cut-off value. The Kaplan-Meier method and the log-rank test were used to determine overall survival (OS) and progression-free survival (PFS). Multivariate analysis was performed using the Cox proportional regression model. A time-dependent receiver operating characteristic (t-ROC) was used to compare the prognostic abilities of the biomarkers.

Results: The study included 57 HIV-infected CRC patients, with a median age of 60 and a follow-up time ranging from 3 to 86 months. Of the patients, 49 were male and 8 were female. The cumulative three-year OS and PFS rates were 55.0% and 45.0%, respectively. The optimal cut-off value for preoperative NLR was found to be 2.8, which was significantly correlated with lower CD8+ T and CD3+ T lymphocyte counts. Multivariate Cox regression analysis revealed that a low NLR was an independent predictor of better OS and PFS (OS: HR = 0.094, 95% CI: 0.02-0.45, P=0.003; PFS: HR = 0.265, 95% CI: 0.088-0.8, P=0.019). The time-dependent receiver operating characteristic (t-ROC) analysis showed that NLR was a superior systemic inflammation biomarker for predicting the prognosis of HIV-infected CRC patients throughout the observation period.

Conclusion: The preoperative neutrophil-to-lymphocyte ratio (NLR), an easily measurable immune biomarker, may provide useful prognostic information in HIV-infected colorectal cancer (CRC) patients.

背景:血清全身性炎症生物标志物是已知的预测结直肠癌(CRC)患者预后的指标。然而,它们在人类免疫缺陷病毒(HIV)感染的结直肠癌患者中的意义尚未得到研究。为了弥补这一空白,我们进行了一项回顾性研究,以评估hiv感染的结直肠癌患者术前全身炎症生物标志物的预后价值。方法:该研究纳入了2015年1月至2021年12月在上海公共卫生临床中心接受手术的57例结直肠癌(CRC)和HIV患者。进行术前检查,并测量全身炎症生物标志物。采用最佳临界值将患者分为两组。Kaplan-Meier法和log-rank检验用于确定总生存期(OS)和无进展生存期(PFS)。采用Cox比例回归模型进行多因素分析。使用时间依赖的受试者工作特征(t-ROC)来比较生物标志物的预后能力。结果:本研究纳入57例hiv感染的结直肠癌患者,中位年龄60岁,随访时间3 ~ 86个月。其中男性49例,女性8例。累计3年OS和PFS分别为55.0%和45.0%。术前NLR的最佳临界值为2.8,与CD8+ T和CD3+ T淋巴细胞计数降低有显著相关性。多因素Cox回归分析显示,低NLR是较好的OS和PFS的独立预测因子(OS: HR = 0.094, 95% CI: 0.02 ~ 0.45, P=0.003;Pfs: hr = 0.265, 95% ci: 0.088-0.8, p =0.019)。时间依赖的受试者工作特征(t-ROC)分析显示,NLR在整个观察期内是预测hiv感染的结直肠癌患者预后的较好的全身炎症生物标志物。结论:术前中性粒细胞与淋巴细胞比值(NLR)是一种易于测量的免疫生物标志物,可为hiv感染的结直肠癌(CRC)患者提供有用的预后信息。
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引用次数: 0
Liver Assessment in Patients with Ataxia-Telangiectasia: Transient Elastography Detects Early Stages of Steatosis and Fibrosis. 失调性毛细血管扩张患者的肝脏评估:瞬时弹性成像检测早期脂肪变性和纤维化。
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2023-01-01 DOI: 10.1155/2023/2877350
H Donath, S Wölke, V Knop, U Heß, R P Duecker, J Trischler, T Poynard, R Schubert, S Zielen

Background: Ataxia-telangiectasia (A-T) is a rare autosomal-recessive multisystem disorder characterized by pronounced cerebellar ataxia, telangiectasia, cancer predisposition, and altered body composition. Liver diseases with steatosis, fibrosis, and hepatocellular carcinoma are frequent findings in older patients but sensitive noninvasive diagnostic tools are lacking.

Objectives: To determine the sensitivity of transient elastography (TE) as a screening tool for early hepatic tissue changes and serum biomarkers for liver disease.

Methods: Thirty-one A-T patients aged 2 to 25 years were examined prospectively from 2016-2018 by TE. In addition, we evaluated the diagnostic performance of liver biomarkers for steatosis and necroinflammatory activity (SteatoTest and ActiTest, Biopredictive, Paris) compared to TE. For calculation and comparison, patients were divided into two groups (<12, >12 years of age).

Results: TE revealed steatosis in 2/21 (10%) younger patients compared to 9/10 (90%) older patients. Fibrosis was present in 3/10 (30%) older patients as assessed by TE. We found a significant correlation of steatosis with SteatoTest, alpha-fetoprotein (AFP), HbA1c, and triglycerides. Liver stiffness correlated significantly with SteatoTest, ActiTest, HbA1c, and triglycerides.

Conclusion: Liver disease is a common finding in older A-T patients. TE is an objective measure to detect early stages of steatosis and fibrosis. SteatoTest and ActiTest are a good diagnostic assessment for steatosis and necroinflammatory activity in patients with A-T and confirmed the TE results.

背景:共济失调-毛细血管扩张症(a-t)是一种罕见的常染色体隐性多系统疾病,其特征是小脑共济失调、毛细血管扩张、癌症易感性和身体成分改变。肝脏疾病伴脂肪变性、纤维化和肝细胞癌是老年患者的常见发现,但缺乏敏感的无创诊断工具。目的:确定瞬变弹性成像(TE)作为早期肝组织变化和肝脏疾病血清生物标志物筛查工具的敏感性。方法:对2016-2018年31例2 ~ 25岁的A-T患者进行TE前瞻性检查。此外,与TE相比,我们评估了肝脏脂肪变性和坏死炎症活性生物标志物(SteatoTest和ActiTest, Biopredictive, Paris)的诊断性能。为了计算和比较,将患者分为两组(12岁)。结果:TE显示2/21(10%)的年轻患者有脂肪变性,而9/10(90%)的老年患者有脂肪变性。通过TE评估,3/10(30%)的老年患者存在纤维化。我们发现脂肪变性与脂肪测试、甲胎蛋白(AFP)、糖化血红蛋白(HbA1c)和甘油三酯有显著相关性。肝硬度与脂肪测试、活动测试、糖化血红蛋白和甘油三酯显著相关。结论:肝病是老年a - t患者的常见发现。TE是检测早期脂肪变性和纤维化的客观指标。脂肪测试(SteatoTest)和活动测试(ActiTest)是a - t患者脂肪变性和坏死炎症活动的良好诊断评估,并证实了TE的结果。
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引用次数: 0
A Comprehensive Hepatitis B Surface Antigen-Positive Patient-Centered Screening and Linkage to Care Strategies Targeting Microelimination of Hepatitis C Virus Infection in Chongqing, China. 在中国重庆开展以患者为中心的乙型肝炎表面抗原阳性综合筛查和护理链接策略,旨在微量消除丙型肝炎病毒感染。
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2022-12-27 eCollection Date: 2022-01-01 DOI: 10.1155/2022/9644576
Dachuan Cai, Dazhi Zhang, Peng Hu, Hong Ren

Background and aims: The likelihood of coinfection increases in regions where HBV is endemic because of the similar transmission route. China is another endemic nation, with 5.9% of the population being HBsAg-positive. This study aimed to evaluate the prevalence of HCV antibody positivity in HBsAg-positive subjects, HCV RNA positivity in anti-HCV positive subjects, and HBV/HCV coinfection with the hope of exploring hepatitis C microelimination using currently available therapies.

Method: 12,500 HBsAg-positive serum samples were collected. All samples were screened for anti-HCV. Furthermore, positive samples were screened for HCV RNA. All patients with positive HCV RNA were followed up for suspicious transmission routes of HCV and linkage to care.

Results: 44 out of 10,560 (0.4%) patients with positive HBsAg had detectable anti-HCV. There were 32 males and 12 females, with a statistical difference. 17 out of 44 were HCV RNA positive. Among them, 15 out of 38 patients were HCV RNA positive; 8 patients had started anti-HCV treatment with the DAA regimen, while the other 7 patients had not. After patient education, one patient had begun treatment and reached SVR12, while three patients still refused anti-HCV treatment.

Conclusion: The HCV/HBV coinfection prevalence was found to be lower in this study. Even though HBV and HCV share a somewhat similar transmission route, HBsAg-positive subjects may not be at high risk for HCV infection. The process of hepatitis C's microelimination could be accelerated by increasing patient awareness and education. This trail is registered with NCT03794791.

背景和目的:在 HBV 流行的地区,由于传播途径相似,合并感染的可能性会增加。中国是另一个地方病流行的国家,有 5.9% 的人口 HBsAg 阳性。本研究旨在评估 HBsAg 阳性受试者中 HCV 抗体阳性、抗 HCV 阳性受试者中 HCV RNA 阳性以及 HBV/HCV 合并感染的发生率,希望利用现有疗法探索丙型肝炎的微观消除方法:方法:收集了 12,500 份 HBsAg 阳性的血清样本。方法:收集 12,500 份 HBsAg 阳性血清样本,对所有样本进行抗-HCV 检测。此外,还对阳性样本进行了 HCV RNA 筛查。对所有 HCV RNA 阳性的患者进行随访,以了解 HCV 的可疑传播途径并进行联系治疗:在 10,560 名 HBsAg 阳性的患者中,有 44 人(0.4%)检测到了抗 HCV。其中男性 32 人,女性 12 人,两者之间存在统计学差异。44 人中有 17 人的 HCV RNA 呈阳性。其中,38 名患者中有 15 名 HCV RNA 阳性;8 名患者已开始使用 DAA 方案进行抗 HCV 治疗,其他 7 名患者尚未开始。在对患者进行教育后,1 名患者开始了治疗并达到了 SVR12,而 3 名患者仍拒绝抗 HCV 治疗:结论:本研究发现,HCV/HBV 合并感染率较低。尽管 HBV 和 HCV 的传播途径有些相似,但 HBsAg 阳性者感染 HCV 的风险可能并不高。通过加强对患者的宣传和教育,可以加速丙型肝炎的微观消除过程。该研究已在 NCT03794791 上注册。
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引用次数: 0
Hepatic Disorders and COVID-19: From Pathophysiology to Treatment Strategy. 肝脏疾病与 COVID-19:从病理生理学到治疗策略。
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2022-12-08 eCollection Date: 2022-01-01 DOI: 10.1155/2022/4291758
Parisa Shiri Aghbash, Hamed Ebrahimzadeh Leylabadlo, Hamidreza Fathi, Mohaddeseh Bahmani, Rojin Chegini, Hossein Bannazadeh Baghi

Following the SARS-CoV-2 outbreak and the subsequent development of the COVID-19 pandemic, organs such as the lungs, kidneys, liver, heart, and brain have been identified as priority organs. Liver diseases are considered a risk factor for high mortality from the COVID-19 pandemic. Besides, liver damage has been demonstrated in a substantial proportion of patients with COVID-19, especially those with severe clinical symptoms. Furthermore, antiviral medications, immunosuppressive drugs after liver transplantation, pre-existing hepatic diseases, and chronic liver diseases such as cirrhosis have also been implicated in SARS-CoV-2-induced liver injury. As a result, some precautions have been taken to prevent, monitor the virus, and avoid immunocompromised and susceptible individuals, such as liver and kidney transplant recipients, from being infected with SARS-CoV-2, thereby avoiding an increase in mortality. The purpose of this review was to examine the impairment caused by SARS-CoV-2 infection and the impact of drugs used during the pandemic on the mortality range and therefore the possibility of preventive measures in patients with liver disease.

继 SARS-CoV-2 爆发以及随后的 COVID-19 大流行发展之后,肺、肾、肝、心和脑等器官已被确定为优先器官。肝脏疾病被认为是 COVID-19 大流行导致高死亡率的一个风险因素。此外,相当一部分 COVID-19 患者,尤其是临床症状严重的患者,肝脏受损的情况已经得到证实。此外,抗病毒药物、肝移植后的免疫抑制药物、原有肝病和慢性肝病(如肝硬化)也与 SARS-CoV-2 引起的肝损伤有关。因此,人们采取了一些预防措施来预防、监测病毒,避免免疫力低下和易感人群(如肝脏和肾脏移植受者)感染 SARS-CoV-2,从而避免死亡率上升。本综述的目的是研究 SARS-CoV-2 感染造成的损害,以及大流行期间使用的药物对死亡率范围的影响,从而研究对肝病患者采取预防措施的可能性。
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引用次数: 0
Reduction of Hepatitis B Surface Antigen May Be More Significant in PEGylated Interferon-Alpha Therapy Combined with Nucleotide Analogues than Combined with Nucleoside Analogues in Chronic Hepatitis B Patients: A Propensity Score Matching Study. 在慢性乙型肝炎患者中,PEG化干扰素-α疗法联合核苷酸类似物比联合核苷酸类似物更能显著降低乙型肝炎表面抗原:倾向得分匹配研究》。
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2022-12-07 eCollection Date: 2022-01-01 DOI: 10.1155/2022/4325352
Yiran Xie, Haoxiang Zhu, Yifei Guo, Zhenxuan Ma, Xun Qi, Feifei Yang, Richeng Mao, Jiming Zhang

Background: Nucleotide analogues (NTs) monotherapy may have a more significant effect on reducing hepatitis B surface antigen (HBsAg) than nucleoside analogues (NSs) due to their immunomodulatory function. However, this superiority remains unknown when combined with PEGylated interferon α (PegIFNα). Therefore, this study aimed to explore whether NTs have more significant antiviral effects than NSs in combination therapy with PegIFNα.

Methods: Chronic hepatitis B (CHB) patients treated with PegIFNα plus nucleos(t)ide analogues (NAs) were retrospectively recruited. Efficacy and the predictors of hepatitis B surface antigen (HBsAg) reduction >1 log10 IU/mL after 48 weeks were analyzed.

Results: A total of 95 patients were included and divided into the PegIFNα + NTs group and the PegIFNα + NSs group. Propensity score matching (PSM) was performed. The PegIFNα + NTs group had a greater reduction of HBsAg (-3.52 vs. -2.33 log10 IU/mL, P=0.032) and a higher proportion of patients with HBsAg reduction >1 log10 IU/mL (100.0% vs. 72.2%, P=0.003) even after PSM. However, HBsAg and hepatitis B e-antigen (HBeAg) loss rates, HBeAg seroconversion rates, degree of HBeAg and hepatitis B virus (HBV) DNA decline, HBV DNA undetectable rates, and alanine aminotransferase (ALT) normalization rates showed no significant differences. Subgroup analyses showed the difference in the reduction of HBsAg was particularly evident in HBeAg-positive and the "add-on" subgroups. PegIFNα plus NTs (OR = 36.667, 95% CI = 3.837-350.384) was an independent predictor for HBsAg reduction >1 log10 IU/mL after 48 weeks.

Conclusion: This study suggests that PegIFNα plus NTs may lead to more HBsAg reduction, especially in HBeAg-positive and "add-on" patients.

背景:核苷酸类似物(NTs)具有免疫调节功能,因此与核苷酸类似物(NSs)相比,单药治疗在降低乙型肝炎表面抗原(HBsAg)方面可能具有更显著的效果。然而,在与聚乙二醇化干扰素α(PegIFNα)联合使用时,这种优越性仍是未知数。因此,本研究旨在探讨在与 PegIFNα 联合治疗时,NTs 是否比 NSs 具有更显著的抗病毒效果:方法:回顾性招募了接受 PegIFNα 加核苷(t)ide 类似物(NAs)治疗的慢性乙型肝炎(CHB)患者。分析了48周后乙肝表面抗原(HBsAg)下降>1 log10 IU/mL的疗效和预测因素:共纳入 95 例患者,分为 PegIFNα + NTs 组和 PegIFNα + NSs 组。进行倾向评分匹配(PSM)。即使在 PSM 后,PegIFNα + NTs 组的 HBsAg 下降幅度更大(-3.52 对 -2.33 log10 IU/mL,P=0.032),HBsAg 下降 >1 log10 IU/mL 的患者比例更高(100.0% 对 72.2%,P=0.003)。然而,HBsAg和乙型肝炎e抗原(HBeAg)丢失率、HBeAg血清转换率、HBeAg和乙型肝炎病毒(HBV)DNA下降程度、HBV DNA检测不到率和丙氨酸氨基转移酶(ALT)正常化率均无显著差异。亚组分析表明,HBsAg 下降的差异在 HBeAg 阳性亚组和 "附加 "亚组尤为明显。PegIFNα加NTs(OR = 36.667,95% CI = 3.837-350.384)是48周后HBsAg下降>1 log10 IU/mL的独立预测因子:本研究表明,PegIFNα加NTs可使HBsAg下降更多,尤其是在HBeAg阳性和 "附加 "患者中。
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引用次数: 0
Neurosteroid Activation of GABA-A Receptors: A Potential Treatment Target for Symptoms in Primary Biliary Cholangitis? GABA-A受体的神经类固醇激活:原发性胆道胆管炎症状的潜在治疗靶点?
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2022-12-06 eCollection Date: 2022-01-01 DOI: 10.1155/2022/3618090
Aaron Wetten, Laura Ogle, George Mells, Vinod S Hegade, Laura Jopson, Margaret Corrigan, Jeremy Palmer, Maja Johansson, Torbjörn Bäckström, Magnus Doverskog, David E J Jones, Jessica K Dyson

Background and aims: A third of patients with primary biliary cholangitis (PBC) experience poorly understood cognitive symptoms, with a significant impact on quality of life (QOL), and no effective medical treatment. Allopregnanolone, a neurosteroid, is a positive allosteric modulator of gamma-aminobutyricacid-A (GABA-A) receptors, associated with disordered mood, cognition, and memory. This study explored associations between allopregnanolone and a disease-specific QOL scoring system (PBC-40) in PBC patients.

Method: Serum allopregnanolone levels were measured in 120 phenotyped PBC patients and 40 age and gender-matched healthy controls. PBC subjects completed the PBC-40 at recruitment. Serum allopregnanolone levels were compared across PBC-40 domains for those with none/mild symptoms versus severe symptoms.

Results: There were no overall differences in allopregnanolone levels between healthy controls (median = 0.03 ng/ml (IQR = 0.025)) and PBC patients (0.031 (0.42), p = 0.42). Within the PBC cohort, higher allopregnanolone levels were observed in younger patients (r (120) = -0.53, p < 0.001) but not healthy controls (r (39) = -0.21, p = 0.21). Allopregnanolone levels were elevated in the PBC-40 domains, cognition (u = 1034, p = 0.02), emotional (u = 1374, p = 0.004), and itch (u = 795, p = 0.03). Severe cognitive symptoms associated with a younger age: severe (50 (12)) vs. none (60 (13); u = 423 p = 0.001).

Conclusion: Elevated serum allopregnanolone is associated with severe cognitive, emotional, and itch symptoms in PBC, in keeping with its known action on GABA-A receptors. Existing novel compounds targeting allopregnanolone could offer new therapies in severely symptomatic PBC, satisfying a significant unmet need.

背景和目的:三分之一的原发性胆管炎(PBC)患者认知症状不清楚,对生活质量(QOL)有显著影响,且没有有效的药物治疗。异孕酮是一种神经类固醇,是γ -氨基丁酸-a (GABA-A)受体的阳性变构调节剂,与情绪、认知和记忆障碍有关。本研究探讨了异孕酮与PBC患者疾病特异性生活质量评分系统(PBC-40)之间的关系。方法:测定120例表型PBC患者和40例年龄、性别匹配的健康对照者血清异孕酮水平。PBC受试者在招募时完成了PBC-40。比较无症状/轻度症状和重度症状患者血清异孕酮水平在PBC-40各域的差异。结果:健康对照组(中位数= 0.03 ng/ml (IQR = 0.025))与PBC患者(0.031 ng/ml (0.42), p = 0.42)之间异孕酮水平总体上无差异。在PBC队列中,在年轻患者中观察到较高的异孕酮水平(r (120) = -0.53, p < 0.001),但在健康对照组中没有(r (39) = -0.21, p = 0.21)。异孕酮在PBC-40、认知(u = 1034, p = 0.02)、情绪(u = 1374, p = 0.004)和瘙痒(u = 795, p = 0.03)等领域水平升高。与较年轻相关的严重认知症状:严重(50 (12))vs.无(60 (13));U = 423 p = 0.001)。结论:血清异孕酮升高与PBC患者严重的认知、情绪和瘙痒症状有关,这与其已知的对GABA-A受体的作用一致。现有的靶向异孕酮的新化合物可以为严重症状的PBC提供新的治疗方法,满足显著的未满足的需求。
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引用次数: 0
Comprehensive Analysis of N6-Methyladenosine (m6A) RNA Methylation Regulators and Tumour Microenvironment Cell Infiltration Involving Prognosis and Immunotherapy in Gastroesophageal Adenocarcinomas. 全面分析N6-甲基腺苷(m6A)RNA甲基化调控因子和肿瘤微环境细胞浸润对胃食管腺癌预后和免疫治疗的影响
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2022-11-21 eCollection Date: 2022-01-01 DOI: 10.1155/2022/3506518
Duanrui Liu, Mingjie Yuan, Zongming Wang, Liping Sun, Yusong Fang, Xiaoli Ma, Lulu Zhang, Yuanxin Xing, Jingyu Zhu, Yunyun Liu, Wenshuai Zhu, Shuqin Bao, Yanfei Jia, Yunshan Wang

Objective: Gastroesophageal adenocarcinoma (GEA) is a high deadly and heterogeneous cancer. RNA N6-methyladenosine (m6A) modification plays a non-negligible role in shaping individual tumour microenvironment (TME) characterizations. However, the landscape and relationship of m6A modification patterns and TME cell infiltration features remain unknown in GEA.

Methods: In this study, we examined the TME of GEA using assessments of the RNA-sequencing data focusing on the distinct m6A modification patterns from the public databases. Intrinsic patterns of m6A modification were evaluated for associations with clinicopathological characteristics, underlying biological pathways, tumour immune cell infiltration, oncological outcomes, and treatment responses. The expression of key m6A regulators and module genes was validated by qRT-PCR analysis.

Results: We identified two distinct m6A modification patterns of GEA (cluster 1/2 subgroup), and correlated two subgroups with TME cell-infiltrating characteristics. Cluster 2 subgroup correlates with a poorer prognosis, downregulated PD-1 expression, higher risk scores, and distinct immune cell infiltration. In addition, PPI and WGCNA network analysis were integrated to identify key module genes closely related to immune infiltration of GEA to find immunotherapy markers. COL4A1 and COL5A2 in the brown module were significantly correlated to the prognosis, PD-1/L1 and CTLA-4 expression of GEA patients. Finally, a prognostic risk score was constructed using m6A regulator-associated signatures that represented an independent prognosis factor for GEA. Interestingly, COL5A2 expression was linked to the response to anti-PD-1 immunotherapy, m6A regulator expression, and risk score.

Conclusion: Our work identified m6A RNA methylation regulators as an important class of players in the malignant progression of GEA and were associated with the complexity of the TME. COL5A2 may be the potential biomarker which contributes to predicting the response to anti-PD-1 immunotherapy and patients' prognosis.

研究目的胃食管腺癌(GEA)是一种高致死率的异质性癌症。RNA N6-甲基腺苷(m6A)修饰在塑造个体肿瘤微环境(TME)特征方面发挥着不可忽视的作用。然而,在 GEA 中,m6A 修饰模式和 TME 细胞浸润特征的分布和关系仍然未知:在这项研究中,我们通过评估RNA测序数据,重点研究了公共数据库中不同的m6A修饰模式,从而研究了GEA的TME。我们评估了m6A修饰的内在模式与临床病理特征、潜在生物通路、肿瘤免疫细胞浸润、肿瘤学结果和治疗反应之间的关联。通过 qRT-PCR 分析验证了关键 m6A 调节因子和模块基因的表达:结果:我们发现了两种不同的GEA m6A修饰模式(1/2亚群),并将两个亚群与TME细胞浸润特征相关联。簇2亚组与较差的预后、下调的PD-1表达、较高的风险评分和独特的免疫细胞浸润相关。此外,通过整合 PPI 和 WGCNA 网络分析,确定了与 GEA 免疫浸润密切相关的关键模块基因,从而找到免疫治疗标记物。棕色模块中的COL4A1和COL5A2与GEA患者的预后、PD-1/L1和CTLA-4表达显著相关。最后,利用m6A调节因子相关特征构建了一个预后风险评分,该评分代表了GEA的一个独立预后因素。有趣的是,COL5A2的表达与抗PD-1免疫疗法的反应、m6A调节因子的表达和风险评分有关:我们的研究发现,m6A RNA甲基化调节因子是GEA恶性进展过程中的一类重要参与者,与TME的复杂性有关。COL5A2可能是预测抗PD-1免疫疗法反应和患者预后的潜在生物标志物。
{"title":"Comprehensive Analysis of N6-Methyladenosine (m<sup>6</sup>A) RNA Methylation Regulators and Tumour Microenvironment Cell Infiltration Involving Prognosis and Immunotherapy in Gastroesophageal Adenocarcinomas.","authors":"Duanrui Liu, Mingjie Yuan, Zongming Wang, Liping Sun, Yusong Fang, Xiaoli Ma, Lulu Zhang, Yuanxin Xing, Jingyu Zhu, Yunyun Liu, Wenshuai Zhu, Shuqin Bao, Yanfei Jia, Yunshan Wang","doi":"10.1155/2022/3506518","DOIUrl":"10.1155/2022/3506518","url":null,"abstract":"<p><strong>Objective: </strong>Gastroesophageal adenocarcinoma (GEA) is a high deadly and heterogeneous cancer. RNA N6-methyladenosine (m<sup>6</sup>A) modification plays a non-negligible role in shaping individual tumour microenvironment (TME) characterizations. However, the landscape and relationship of m<sup>6</sup>A modification patterns and TME cell infiltration features remain unknown in GEA.</p><p><strong>Methods: </strong>In this study, we examined the TME of GEA using assessments of the RNA-sequencing data focusing on the distinct m<sup>6</sup>A modification patterns from the public databases. Intrinsic patterns of m<sup>6</sup>A modification were evaluated for associations with clinicopathological characteristics, underlying biological pathways, tumour immune cell infiltration, oncological outcomes, and treatment responses. The expression of key m<sup>6</sup>A regulators and module genes was validated by qRT-PCR analysis.</p><p><strong>Results: </strong>We identified two distinct m<sup>6</sup>A modification patterns of GEA (cluster 1/2 subgroup), and correlated two subgroups with TME cell-infiltrating characteristics. Cluster 2 subgroup correlates with a poorer prognosis, downregulated PD-1 expression, higher risk scores, and distinct immune cell infiltration. In addition, PPI and WGCNA network analysis were integrated to identify key module genes closely related to immune infiltration of GEA to find immunotherapy markers. COL4A1 and COL5A2 in the brown module were significantly correlated to the prognosis, PD-1/L1 and CTLA-4 expression of GEA patients. Finally, a prognostic risk score was constructed using m<sup>6</sup>A regulator-associated signatures that represented an independent prognosis factor for GEA. Interestingly, COL5A2 expression was linked to the response to anti-PD-1 immunotherapy, m<sup>6</sup>A regulator expression, and risk score.</p><p><strong>Conclusion: </strong>Our work identified m<sup>6</sup>A RNA methylation regulators as an important class of players in the malignant progression of GEA and were associated with the complexity of the TME. COL5A2 may be the potential biomarker which contributes to predicting the response to anti-PD-1 immunotherapy and patients' prognosis.</p>","PeriodicalId":48755,"journal":{"name":"Canadian Journal of Gastroenterology and Hepatology","volume":"2022 ","pages":"3506518"},"PeriodicalIF":2.7,"publicationDate":"2022-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9705116/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10336177","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Construction of a Prognostic Model Based on Cuproptosis-Related lncRNA Signatures in Pancreatic Cancer. 基于胰腺癌杯突相关 lncRNA 标志构建预后模型
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2022-11-11 eCollection Date: 2022-01-01 DOI: 10.1155/2022/4661929
Wenkai Jiang, Yan Du, Wenlong Zhang, Wence Zhou

Aim: The aim of this study is to identify cuproptosis-related lncRNAs and construct a prognostic model for pancreatic cancer patients for clinical use.

Methods: The expression profile of lncRNAs was downloaded from The Cancer Genome Atlas database, and cuproptosis-related lncRNAs were identified. The prognostic cuproptosis-related lncRNAs were obtained and used to establish and validate a prognostic risk score model in pancreatic cancer.

Results: In total, 181 cuproptosis-related lncRNAs were obtained. The prognostic risk score model was constructed based on five lncRNAs (AC025257.1, TRAM2-AS1, AC091057.1, LINC01963, and MALAT1). Patients were assigned to two groups according to the median risk score. Kaplan-Meier survival curves showed that the difference in the prognosis between the high- and low-risk groups was statistically significant. Multivariate Cox analysis showed that our risk score was an independent risk factor for pancreatic cancer patients. Receiver operator characteristic curves revealed that the cuproptosis-related lncRNA model can effectively predict the prognosis of pancreatic cancer. The principal component analysis showed a difference between the high- and low-risk groups intuitively. Functional enrichment analysis showed that different genes were involved in cancer-related pathways in patients in the high- and low-risk groups.

Conclusion: The risk model based on five prognostic cuproptosis-related lncRNAs can well predict the prognosis of pancreatic cancer patients. Cuproptosis-related lncRNAs could be potential biomarkers for pancreatic cancer diagnosis and treatment.

目的:本研究旨在鉴定杯突相关lncRNA,并构建胰腺癌患者的预后模型,供临床使用:方法:从癌症基因组图谱数据库中下载lncRNAs的表达谱,并鉴定杯突相关的lncRNAs。方法:从癌症基因组图谱数据库中下载lncRNAs表达谱,鉴定杯突相关lncRNAs,获得预后杯突相关lncRNAs,用于建立和验证胰腺癌预后风险评分模型:结果:共获得181个杯突症相关lncRNA。结果:共获得181个杯突症相关lncRNA,并根据5个lncRNA(ACE025257.1、TRAM2-AS1、AC091057.1、LINC01963和MALAT1)构建了预后风险评分模型。根据中位风险评分将患者分为两组。卡普兰-梅耶生存曲线显示,高危组和低危组的预后差异具有统计学意义。多变量 Cox 分析显示,我们的风险评分是胰腺癌患者的一个独立风险因素。接收者操作特征曲线显示,杯突相关lncRNA模型能有效预测胰腺癌的预后。主成分分析直观地显示了高风险组和低风险组之间的差异。功能富集分析表明,高危组和低危组患者的不同基因参与了癌症相关通路:基于五个预后杯突相关lncRNA的风险模型可以很好地预测胰腺癌患者的预后。杯突相关lncRNA可能成为胰腺癌诊断和治疗的潜在生物标志物。
{"title":"Construction of a Prognostic Model Based on Cuproptosis-Related lncRNA Signatures in Pancreatic Cancer.","authors":"Wenkai Jiang, Yan Du, Wenlong Zhang, Wence Zhou","doi":"10.1155/2022/4661929","DOIUrl":"10.1155/2022/4661929","url":null,"abstract":"<p><strong>Aim: </strong>The aim of this study is to identify cuproptosis-related lncRNAs and construct a prognostic model for pancreatic cancer patients for clinical use.</p><p><strong>Methods: </strong>The expression profile of lncRNAs was downloaded from The Cancer Genome Atlas database, and cuproptosis-related lncRNAs were identified. The prognostic cuproptosis-related lncRNAs were obtained and used to establish and validate a prognostic risk score model in pancreatic cancer.</p><p><strong>Results: </strong>In total, 181 cuproptosis-related lncRNAs were obtained. The prognostic risk score model was constructed based on five lncRNAs (AC025257.1, TRAM2-AS1, AC091057.1, LINC01963, and MALAT1). Patients were assigned to two groups according to the median risk score. Kaplan-Meier survival curves showed that the difference in the prognosis between the high- and low-risk groups was statistically significant. Multivariate Cox analysis showed that our risk score was an independent risk factor for pancreatic cancer patients. Receiver operator characteristic curves revealed that the cuproptosis-related lncRNA model can effectively predict the prognosis of pancreatic cancer. The principal component analysis showed a difference between the high- and low-risk groups intuitively. Functional enrichment analysis showed that different genes were involved in cancer-related pathways in patients in the high- and low-risk groups.</p><p><strong>Conclusion: </strong>The risk model based on five prognostic cuproptosis-related lncRNAs can well predict the prognosis of pancreatic cancer patients. Cuproptosis-related lncRNAs could be potential biomarkers for pancreatic cancer diagnosis and treatment.</p>","PeriodicalId":48755,"journal":{"name":"Canadian Journal of Gastroenterology and Hepatology","volume":"2022 ","pages":"4661929"},"PeriodicalIF":2.7,"publicationDate":"2022-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9674419/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9264936","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
The Role of Combining Probiotics in Preventing and Controlling Inflammation: A Focus on the Anti-Inflammatory and Immunomodulatory Effects of Probiotics in an In Vitro Model of IBD. 联合使用益生菌预防和控制炎症的作用:益生菌在IBD体外模型中的抗炎和免疫调节作用的研究
IF 2.7 4区 医学 Q2 Medicine Pub Date : 2022-11-08 eCollection Date: 2022-01-01 DOI: 10.1155/2022/2045572
Shadi Aghamohammad, Amin Sepehr, Seyedeh Tina Miri, Saeideh Najafi, Mohammad R Pourshafie, Mahdi Rohani

Objective: IBD is an inflammatory disease with abnormalities such as dysbiosis and abnormal immune system activity. Probiotics, as live beneficial microorganisms, play a role in maintaining health through various mechanisms, including the modulation of the immune system and the control of inflammation. Here, we aimed to investigate the efficacy of a probiotic mixture of Lactobacillus spp. and Bifidobacterium spp. in modulating JAK/STAT and NF-kB inflammatory signaling pathways.

Method: A quantitative real-time polymerase chain reaction (qPCR) assay was conducted to analyze the expression of JAK/STAT and inflammatory genes after treatment with the probiotic mixture before, after, and simultaneously with the sonicated pathogen in the HT-29 cell line. The production of IL-6 and IL-1β after probiotic treatment was investigated via cytokine assay.

Results: Treatment with probiotics resulted in downregulation of TIRAP, IRAK4, NEMO, and RIP genes in the NF-kB pathway and JAK/STAT genes compared with sonicat-treated cells as inflammation inducers. The production of IL-6 and IL-1 decreased after probiotic treatment.

Conclusions: The probiotic mixture of Lactobacillus spp. and Bifidobacterium spp. showed anti-inflammatory effects by modulating JAK/STAT and NF-kB signaling pathways. The use of probiotics could be considered as an appropriate complementary treatment for patients with inflammatory bowel disease.

目的:IBD是一种具有生态失调和免疫系统活性异常等异常的炎症性疾病。益生菌作为一种活的有益微生物,通过多种机制在维持健康方面发挥作用,包括调节免疫系统和控制炎症。在这里,我们旨在研究乳酸菌和双歧杆菌混合益生菌对JAK/STAT和NF-kB炎症信号通路的调节作用。方法:采用实时定量聚合酶链反应(qPCR)方法,对HT-29细胞株在超声病原体作用前、作用后及同时使用益生菌混合物处理后JAK/STAT及炎症基因的表达进行分析。通过细胞因子试验研究益生菌处理后白细胞介素6和白细胞介素1β的产生。结果:与超声处理的炎症诱导细胞相比,益生菌处理导致NF-kB通路中的TIRAP、IRAK4、NEMO和RIP基因以及JAK/STAT基因下调。益生菌处理后IL-6和IL-1的产生降低。结论:乳酸菌和双歧杆菌混合菌通过调节JAK/STAT和NF-kB信号通路发挥抗炎作用。益生菌的使用可以被认为是炎症性肠病患者的一种适当的补充治疗。
{"title":"The Role of Combining Probiotics in Preventing and Controlling Inflammation: A Focus on the Anti-Inflammatory and Immunomodulatory Effects of Probiotics in an <i>In Vitro</i> Model of IBD.","authors":"Shadi Aghamohammad,&nbsp;Amin Sepehr,&nbsp;Seyedeh Tina Miri,&nbsp;Saeideh Najafi,&nbsp;Mohammad R Pourshafie,&nbsp;Mahdi Rohani","doi":"10.1155/2022/2045572","DOIUrl":"https://doi.org/10.1155/2022/2045572","url":null,"abstract":"<p><strong>Objective: </strong>IBD is an inflammatory disease with abnormalities such as dysbiosis and abnormal immune system activity. Probiotics, as live beneficial microorganisms, play a role in maintaining health through various mechanisms, including the modulation of the immune system and the control of inflammation. Here, we aimed to investigate the efficacy of a probiotic mixture of <i>Lactobacillus</i> spp. and <i>Bifidobacterium</i> spp. in modulating JAK/STAT and NF-kB inflammatory signaling pathways.</p><p><strong>Method: </strong>A quantitative real-time polymerase chain reaction (qPCR) assay was conducted to analyze the expression of JAK/STAT and inflammatory genes after treatment with the probiotic mixture before, after, and simultaneously with the sonicated pathogen in the HT-29 cell line. The production of IL-6 and IL-1<i>β</i> after probiotic treatment was investigated via cytokine assay.</p><p><strong>Results: </strong>Treatment with probiotics resulted in downregulation of <i>TIRAP</i>, <i>IRAK4</i>, <i>NEMO</i>, and <i>RIP</i> genes in the NF-kB pathway and <i>JAK</i>/<i>STAT</i> genes compared with sonicat-treated cells as inflammation inducers. The production of IL-6 and IL-1 decreased after probiotic treatment.</p><p><strong>Conclusions: </strong>The probiotic mixture of <i>Lactobacillus</i> spp. and <i>Bifidobacterium</i> spp. showed anti-inflammatory effects by modulating JAK/STAT and NF-kB signaling pathways. The use of probiotics could be considered as an appropriate complementary treatment for patients with inflammatory bowel disease.</p>","PeriodicalId":48755,"journal":{"name":"Canadian Journal of Gastroenterology and Hepatology","volume":" ","pages":"2045572"},"PeriodicalIF":2.7,"publicationDate":"2022-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9666007/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40694774","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
期刊
Canadian Journal of Gastroenterology and Hepatology
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