Soft soil sites typically exhibit nonlinear behavior and pronounced surface amplification during seismic loading. As common foundations on such sites, pile foundations can alter local seismic responses through pile-soil interaction. However, pile-soil interaction is frequently simplified or overlooked in seismic design, rendering large-scale infrastructure on coastal soft soils susceptible to strong earthquakes and associated secondary hazards. To tackle this problem, a dynamic centrifuge test was conducted on a pile-group foundation in soft clay. Two accelerometer arrays were installed: the Aa array in the free-field zone (0.54 m from the pile cap center, model scale) as a reference, and the Ab array in the pile-influenced zone (0.12 m from the pile cap center, model scale) to measure pile-soil interaction effects. A three-dimensional numerical simulation consistent with the test conditions was also performed, and its results generally agree with the centrifuge test data. Data were analyzed using Arias intensity (AI), the Hilbert and marginal spectra from the Hilbert-Huang Transform (HHT), and acceleration amplification factors. Results indicate that the pile-influenced zone undergoes a distinct dynamic process of energy input and release. Compared with the free-field zone, the pile-influenced zone accumulates more energy; its energy release shows an initial delay followed by a rapid increase. This behavior reveals an evolutionary mechanism of the pile-soil structural system (PSS): early-stage inhibition of seismic energy transmission, followed by mid-to-late stage local energy accumulation and accelerated release. The near-surface soft soil layer attenuates high-frequency seismic components and amplifies low-frequency components, an effect significantly enhanced by pile foundations. There is a fundamental difference in dynamic response mechanisms between the pile-influenced zone and free-field zone: the pile-influenced zone is governed by the PSS, whereas the free-field zone is dominated by wave interference and soil-layer filtering. Moreover, the frequency content of the input motion further modulates the amplification effect: seismic waves with lower dominant frequencies induce significantly higher amplification, and this effect is further enhanced in the pile-influenced zone.
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