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Economic evaluation of antimicrobial usage surveillance in livestock. 家畜抗菌药物使用监测的经济评价。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3347
P Alarcon, C L Strang, Y M Chang, M Tak

There is increased pressure by governments and industry to develop national surveillance programmes to evaluate antimicrobial usage (AMU) in animals. This article presents a methodological approach to cost-effectiveness analysis of such programmes. Seven objectives are proposed for AMU surveillance in animals: quantifying use, finding trends, detecting hotspots, identifying risk factors, encouraging research, evaluating the impact of policies and diseases, and demonstrating compliance with regulations. Achieving these objectives would assist in making decisions about potential interventions, help to generate trust, incentivise the reduction of AMU and decrease the risk of antimicrobial resistance. The cost-effectiveness of each objective can be found by dividing the cost of the programme by the performance indicators of the surveillance required to meet the objective concerned. The precision and accuracy of surveillance outputs are suggested here as useful performance indicators. Precision depends on the level of surveillance coverage (SC) and surveillance representativeness (SR). Accuracy is influenced by the quality of farm records and SR. The authors argue that there is an increase in marginal cost for each unit increase of SC, SR and data quality. This is caused by the increasing difficulty of recruiting farmers due to potential barriers such as staff capacity, capital availability, computing literacy and availability, and geographical differences, among other factors. A simulation model was conducted to test the approach, using the quantification of AMU as the primary objective, and to provide evidence of the application of the law of diminishing returns. Cost-effectiveness analysis can be used to support decisions on the level of coverage, representativeness and data quality required in such AMU programmes.

各国政府和工业界正面临越来越大的压力,要求制定国家监测规划,以评估动物中抗菌素的使用情况。本文提出了对这类方案进行成本效益分析的方法方法。提出了对动物进行抗菌素监测的七个目标:量化使用情况、发现趋势、发现热点、确定风险因素、鼓励研究、评估政策和疾病的影响以及证明遵守了法规。实现这些目标将有助于就可能的干预措施作出决定,有助于产生信任,激励减少AMU并降低抗菌素耐药性的风险。每个目标的成本效益可以用方案费用除以实现有关目标所需的监测的执行情况指标来计算。这里建议将监测输出的精度和准确性作为有用的绩效指标。精度取决于监测覆盖(SC)和监测代表性(SR)的水平。准确性受到农场记录和SR质量的影响。作者认为,SC、SR和数据质量每增加一个单位,边际成本就会增加。造成这种情况的原因是,由于潜在的障碍,如人员能力、资金可用性、计算机素养和可用性以及地理差异等因素,招募农民的难度越来越大。以AMU的量化为主要目标,建立了一个仿真模型来验证该方法,并为收益递减规律的应用提供了证据。成本效益分析可用于支持就这种特别监测单位方案所需的覆盖范围、代表性和数据质量作出决定。
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引用次数: 0
Preface: Small world, big data. 前言:小世界,大数据。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3343
M Eloit
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引用次数: 0
The World Organisation for Animal Health Observatory: a data-driven approach to address the needs of its Members. 世界动物卫生组织观察站:以数据为导向解决其成员需求的方法。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3345
G Avendan-Perez, L Weber-Vintzel

This article reviews the Observatory of the World Organisation for Animal Health (WOAH, founded as OIE), including its objectives, direction and progress achieved so far. It explains the benefits offered by this data-driven programme in improving access to data and information analysis while ensuring confidentiality. In addition, the authors examine the challenges that the Observatory faces and its inextricable link to the Organisation's data management. The development of the Observatory is of the utmost importance, not only for its relevance to the development of WOAH International Standards and their implementation worldwide, but also because of its role as one of the drivers of WOAH's digital transformation plan. This transformation is essential, given the major role of information technologies in supporting regulation for animal health, animal welfare and veterinary public health.

本文回顾了世界动物卫生组织观察站(WOAH,前身为世界动物卫生组织),包括其目标、方向和迄今取得的进展。它解释了这一数据驱动方案在确保保密性的同时改善对数据和信息分析的获取方面所提供的好处。此外,作者还探讨了天文台面临的挑战及其与本组织数据管理的密不可分的联系。天文台的发展至关重要,不仅因为它与WOAH国际标准的制定及其在全球范围内的实施有关,而且因为它是WOAH数字化转型计划的驱动因素之一。鉴于信息技术在支持动物卫生、动物福利和兽医公共卫生监管方面的重要作用,这种转变至关重要。
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引用次数: 0
Disease outbreak response: why epidemiology plays a central role. 疾病暴发应对:为什么流行病学发挥核心作用。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3361
R Avigad, J Ellis-Iversen, J Gibbens, R Hepple, A Paterson

The need to control transboundary animal disease outbreaks is widely recognised, as is the need for evidence-based decisions regarding which control measures to implement. Key data and information are required to inform this evidence base. To ensure effective communication of the evidence, a rapid process of collation, interpretation and translation is required. This paper describes how epidemiology can provide the framework through which relevant specialists can be engaged to this end, and highlights the central role of epidemiologists, with their unique combination of skills, in this process. It provides an example of an evidence team led by epidemiologists, namely the United Kingdom National Emergency Epidemiology Group, which was established to address this need. It then goes on to consider the different strands of epidemiology, the need for a wide multidisciplinary approach, and the importance of training and preparedness activities to facilitate rapid response.

控制跨界动物疾病暴发的必要性得到了广泛承认,就实施何种控制措施作出循证决定的必要性也得到了广泛承认。这一证据基础需要关键数据和信息。为了确保证据的有效交流,需要一个快速的整理、口译和笔译过程。本文描述了流行病学如何提供框架,通过该框架,相关专家可以参与实现这一目标,并强调了流行病学家在这一过程中的核心作用,以及他们独特的技能组合。它提供了一个由流行病学家领导的证据小组的例子,即联合王国国家紧急流行病学小组,该小组的成立是为了满足这一需求。然后,它继续考虑流行病学的不同部分,广泛的多学科方法的必要性,以及培训和准备活动以促进快速反应的重要性。
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引用次数: 0
Infectious disease modelling to inform policy. 建立传染病模型为政策提供信息。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3360
R R Kao, G C Smith, M Walker

With modelling becoming increasingly important in helping to inform decisions about animal diseases, it is essential that the process be optimised to gain the maximum benefit for the decision-maker. Here, the authors set out ten steps that can improve this process for all concerned. Four steps describe initialisation to ensure that the question, answer and timescale are defined; two steps describe the modelling process and quality assurance; and four steps describe the reporting stage. The authors believe that this greater emphasis at the beginning and end of a modelling project will increase the relevance of the work and understanding of the results, and thus contribute towards better decision-making.

随着建模在帮助为有关动物疾病的决策提供信息方面变得越来越重要,优化这一过程以获得决策者的最大利益至关重要。在这里,作者列出了十个步骤,可以为所有相关人员改进这一过程。四个步骤描述了初始化,以确保问题、答案和时间尺度被定义;两个步骤描述了建模过程和质量保证;报告阶段分为四个步骤。作者认为,在建模项目的开始和结束时更大的强调将增加工作的相关性和对结果的理解,从而有助于更好的决策。
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引用次数: 0
Introduction: Data and the need to quantify: a personal perspective. 引言:数据和量化的需要:个人观点。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3344
S W J Reid
There is an argument to be made that the only truly unifying language of our modern world lies in the ones and zeros of our pervasive digital universe, and it is in this ecosystem that the concept of big data resides. Yet remaining central to the utility we extract from the data we now collect by the terabyte is our ability to analyse, assess and prioritise – and importantly, the need to quantify.
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引用次数: 0
A framework for assessing confidence in freedom from infection in animal disease control programmes. 评估动物疾病控制规划中免于感染信心的框架。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3364
C Fourichon, D A Graham, M Nielen, G Van Schaik, S J More, A Madouasse, A M van Roon, J Frossling, J Gethmann, M Mercat, E Agren, C Sauter-Louis, G Gunn, J Eze, R Humphry, M K Henry, M Guelbenzu, I M G Santman-Berends

In the Surveillance Tool for Outcome-based Comparison of FREEdom from infection (STOC free) project (https://www.stocfree.eu), a data collection tool was constructed to facilitate standardised collection of input data, and a model was developed to allow a standardised and harmonised comparison of the outputs of different control programmes (CPs) for cattle diseases. The STOC free model can be used to evaluate the probability of freedom from infection for herds in CPs and to determine whether these CPs comply with the European Union's pre-defined output-based standards. Bovine viral diarrhoea virus (BVDV) was chosen as the case disease for this project because of the diversity in CPs in the six participating countries. Detailed BVDV CP and risk factor information was collected using the data collection tool. For inclusion of the data in the STOC free model, key aspects and default values were quantified. A Bayesian hidden Markov model was deemed appropriate, and a model was developed for BVDV CPs. The model was tested and validated using real BVDV CP data from partner countries, and corresponding computer code was made publicly available. The STOC free model focuses on herd-level data, although that animal-level data can be included after aggregation to herd level. The STOC free model is applicable to diseases that are endemic, given that it needs the presence of some infection to estimate parameters and enable convergence. In countries where infection-free status has been achieved, a scenario tree model could be a better suited tool. Further work is recommended to generalise the STOC free model to other diseases.

在基于结果的无感染自由度比较监测工具项目(https://www.stocfree.eu)中,构建了一个数据收集工具,以方便标准化收集输入数据,并开发了一个模型,以便对牛疾病不同控制计划(CPs)的产出进行标准化和协调的比较。STOC自由模型可用于评估畜群免受感染的概率,并确定这些畜群是否符合欧盟预先定义的基于输出的标准。之所以选择牛病毒性腹泻病毒(BVDV)作为本项目的病例病,是因为6个参与国的CPs存在多样性。使用数据收集工具收集详细的BVDV CP和危险因素信息。为了将数据纳入STOC自由模型,对关键方面和默认值进行了量化。贝叶斯隐马尔可夫模型被认为是合适的,并为BVDV CPs开发了一个模型。使用来自伙伴国家的BVDV CP真实数据对该模型进行了测试和验证,并公开提供了相应的计算机代码。STOC免费模型侧重于群体级数据,尽管在聚合到群体级后可以包括动物级数据。无STOC模型适用于地方病,因为它需要存在一些感染来估计参数并使其收敛。在已经实现无感染状态的国家,情景树模型可能是一种更合适的工具。建议进一步开展工作,将无STOC模型推广到其他疾病。
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引用次数: 0
Challenges and opportunities of sharing animal health data for research and disease management: a case study of bovine tuberculosis. 共享用于研究和疾病管理的动物卫生数据的挑战和机遇:牛结核病案例研究。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3350
A Mitchell, N Alexander, J Ellerbeck, G Enticott, P Hogarth, A Prosser, L Lambert, D Hackett, N Tait, J Tiller, P Upton, W Wint

The sharing of animal disease data should be encouraged. The analysis of such data will broaden our knowledge of animal diseases and potentially provide insights into their management. However, the need to conform to data protection rules in the sharing of such data for analysis purposes often poses practical difficulties. This paper sets out the challenges and the methods used for the sharing of animal health data in England, Scotland and Wales - Great Britain - using bovine tuberculosis (bTB) data as a case study. The data sharing described is undertaken by the Animal and Plant Health Agency on behalf of the Department for Environment, Food and Rural Affairs and the Welsh and Scottish Governments. It should be noted that animal health data are held at the level of Great Britain (rather than the United Kingdom - which includes Northern Ireland), as Northern Ireland's Department of Agriculture, Environment and Rural Affairs has its own separate data systems. Bovine tuberculosis is the most significant and costly animal health problem facing cattle farmers in England and Wales. It can be devastating for farmers and farming communities and the control costs for taxpayers in Great Britain are over £150 million a year. The authors describe two methods of data sharing - first, where data are requested by, and delivered to, an academic institution for epidemiological or scientific analysis, and second, where data are proactively published in an accessible and meaningful way. They provide details of an example of the second method, namely, the free-to-access website ‘information bovine TB' (https://ibtb.co.uk), which publishes bTB data for the benefit of the farming community and veterinary health professionals.

应鼓励共享动物疾病数据。对这些数据的分析将扩大我们对动物疾病的认识,并可能为其管理提供见解。然而,为了分析目的而共享此类数据时需要遵守数据保护规则,这往往会带来实际困难。本文以牛结核病(bTB)数据作为案例研究,阐述了在英格兰、苏格兰和威尔士(大不列颠)共享动物卫生数据所面临的挑战和使用的方法。上述数据共享是由动植物卫生局代表环境、食品和农村事务部以及威尔士和苏格兰政府进行的。应该指出的是,动物健康数据是在大不列颠(而不是联合王国——其中包括北爱尔兰)一级保存的,因为北爱尔兰的农业、环境和农村事务部有自己独立的数据系统。牛结核病是英格兰和威尔士养牛户面临的最严重和最昂贵的动物健康问题。这对农民和农业社区来说是毁灭性的,英国纳税人每年的控制成本超过Â 1.5亿英镑。这组作者描述了两种数据共享的方法——第一种是由学术机构请求数据并将其提供给流行病学或科学分析,第二种是以一种可访问和有意义的方式主动发布数据。他们详细介绍了第二种方法的一个例子,即免费访问的网站“牛结核病信息”(https://ibtb.co.uk),该网站公布了牛结核病数据,以造福农业社区和兽医卫生专业人员。
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引用次数: 0
Business-centric data solutions for safeguarding animal agriculture in the United States of America. 以商业为中心的数据解决方案,用于保护美国的动物农业。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3346
L Estberg, J Luxton, K Spiegel, A Pelzel-Mccluskey, B L Gomez, J L Vanden Eng

Business-centric solutions to data-related problems often yield the greatest positive impacts and improvements for private enterprises but are challenging to design and implement at scale within government agencies. The core mission of the Veterinary Services of the United States Department of Agriculture (USDA) Animal Plant Health Inspection Service is to safeguard animal agriculture in the United States of America, and effective data management underpins these efforts. As this agency works to assist data-driven decision-making in animal health management, it continues to use a blend of best practices from Federal Data Strategy initiatives and the International Data Management Association framework. This paper describes three case studies that focus on strategies to improve animal health data collection, integration, reporting and governance for animal health authorities. These strategies have enhanced the way USDA's Veterinary Services execute their mission and core operational activities for prevention, detection and early response to support disease containment and control.

针对数据相关问题的以业务为中心的解决方案通常会对私营企业产生最大的积极影响和改进,但在政府机构中进行大规模设计和实施具有挑战性。美国农业部动植物卫生检验局兽医处的核心任务是保护美利坚合众国的动物农业,有效的数据管理是这些工作的基础。由于该机构致力于协助数据驱动的动物健康管理决策,它继续使用联邦数据战略倡议和国际数据管理协会框架的最佳做法。本文介绍了三个案例研究,重点关注改善动物卫生当局动物卫生数据收集、整合、报告和治理的战略。这些战略加强了美国农业部兽医服务执行其使命和核心业务活动的方式,以预防、检测和早期反应,支持疾病遏制和控制。
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引用次数: 0
Big data from small animals: integrating multi-level environmental data into the Dog Aging Project. 小动物大数据:将多层次环境数据整合到狗狗老龄化项目中。
IF 0.6 4区 农林科学 Q2 Agricultural and Biological Sciences Pub Date : 2023-05-01 DOI: 10.20506/rst.42.3349
D Xue, D Collins, M Kauffman, M Dunbar, K Crowder, S M Schwartz, A Ruple

Environmental exposures can have large impacts on health outcomes. While many resources have been dedicated to understanding how humans are influenced by the environment, few efforts have been made to study the role of built and natural environmental features on animal health. The Dog Aging Project (DAP) is a longitudinal community science study of aging in companion dogs. Using a combination of owner-reported surveys and secondary sources linked through geocoded coordinates, DAP has captured home, yard and neighbourhood variables for over 40,000 dogs. The DAP environmental data set spans four domains: the physical and built environment; chemical environment and exposures; diet and exercise; and social environment and interactions. By combining biometric data, measures of cognitive function and behaviour, and medical records, DAP is attempting to use a big-data approach to transform the understanding of how the surrounding world affects the health of companion dogs. In this paper, the authors describe the data infrastructure developed to integrate and analyse multi-level environmental data that can be used to improve the understanding of canine co-morbidity and aging.

环境暴露可对健康结果产生重大影响。虽然许多资源都致力于了解人类如何受到环境的影响,但很少有人努力研究人造环境和自然环境特征对动物健康的作用。狗衰老项目(DAP)是一项关于伴侣犬衰老的纵向社区科学研究。通过结合主人报告的调查和通过地理编码坐标链接的二手资源,DAP已经捕获了超过40,000只狗的家庭,院子和社区变量。DAP环境数据集涵盖四个领域:物理和建筑环境;化学环境与暴露;饮食和运动;以及社会环境和互动。通过结合生物特征数据、认知功能和行为测量以及医疗记录,DAP正在尝试使用大数据方法来改变对周围世界如何影响伴侣狗健康的理解。在本文中,作者描述了用于集成和分析多层次环境数据的数据基础设施,这些数据可用于提高对犬共病和衰老的理解。
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引用次数: 0
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