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Genetic Analysis of a Newly Established Deer Population Expanding in the Sasebo Area in Nagasaki Prefecture, Japan Reveals No Evidence of Genetic Disturbance by Formosan Sika Deer 日本长崎县佐世保地区新建立的鹿种群的遗传分析没有发现台湾梅花鹿遗传干扰的证据
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-06-17 DOI: 10.3106/ms2020-0084
J. Nagata, M. Yasuda, A. Yamashiro
Abstract. Native sika deer (Cervus nippon) had not been observed in and around Sasebo City, Nagasaki Prefecture, Kyushu, Japan. However, deer have recently been confirmed in this area, and the number of individuals and the range have been expanding, causing damage to forestry and natural vegetation. Although the origin of these deer is unknown, it may be derived from Formosan sika deer (C. n. taiouanus), which is listed as an invasive alien species in Japan. There is concern about hybridization between this subspecies and the native Japanese sika deer. In the present study, we used genetic methods to assess the current status of the deer in the Sasebo area of Nagasaki Prefecture, particularly its origin and hybridization. Our study showed that the deer did not originate from Formosan sika deer, and we found no evidence of hybridization. The deer in the Sasebo area were found to have a haplotype included in the southern Japanese sika deer lineage. The current study was unable to identify the specific origin of the deer due to limitations in PCR-RFLP and mitochondrial DNA sequencing analysis.
摘要在日本九州长崎县佐世保市及其周边地区未发现本地梅花鹿(Cervus nippon)。然而,鹿最近在这一地区被证实,个体数量和范围都在扩大,对森林和自然植被造成了破坏。虽然这些鹿的来源不明,但它可能来自台湾梅花鹿(c.n. taiouanus),这是日本列为外来入侵物种。人们担心这个亚种与日本本土梅花鹿之间的杂交。本研究采用遗传方法对长崎县佐世保地区小鹿的现状进行了分析,重点分析了其起源和杂交情况。我们的研究显示,梅花鹿并非起源于台湾梅花鹿,我们也没有发现杂交的证据。佐世保地区的鹿被发现具有日本南部梅花鹿谱系的单倍型。由于PCR-RFLP和线粒体DNA测序分析的限制,目前的研究无法确定鹿的具体起源。
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引用次数: 2
Selection of the Young Coconut Mesocarp by the Sulawesi Babirusa (Babyrousa celebensis) 苏拉威西岛Babirusa (Babyrousa celebensis)对幼椰子中果皮的选择
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-06-02 DOI: 10.3106/ms2020-0059
Masaaki Ito, A. Macdonald, K. Leus, Yamato Hasegawa, İ. Balık, I. W. G. Bandem Arimbawa, I. D. G. Agung Atmaja
Abstract. The feeding behaviours of the Sulawesi babirusa (Babyrousa celebensis) in terms of its preference to eat the mesocarp, or husk, of immature coconuts (Cocos nucifera) and the feeding marks on leftover coconuts were observed. Additionally, to explore the physicochemical factors behind this preference, a comparative study was conducted on the basal and apical parts of the coconut mesocarp. The breaking load, macronutrient content, and volatile compounds were examined. The findings were as follows: 1) Babirusas always sniffed the cut surface of the coconut before eating. They then scooped out the basal part of the mesocarp where the fibres are more visibly scarce with their mandibular incisors and ate more than 7.6 times the surface area at this end than at the apical end. 2) The preferred basal part of the immature mesocarp had a lower breaking load. 3) The gas chromatography-mass spectrophotometry (GC-MS) chromatogram of the basal sample showed larger peak areas for 2-methylbutanal and 3-methylbutanal. In conclusion, the babirusa preferred the basal part of the immature coconut mesocarp, and the preferred basal part had distinctive features in terms of hardness and volatile profile, which is probably characterised by the presence of 2-methylbutanal and 3-methylbutanal.
摘要本文观察了苏拉威西大腹虫(Babyrousa celebensis)偏爱吃未成熟椰子(Cocos nucifera)的中果皮或外壳的摄食行为,以及剩余椰子上的摄食痕迹。此外,为了探究这种偏好背后的物理化学因素,我们对椰子中果皮基部和顶部进行了比较研究。测定了断裂负荷、常量营养素含量和挥发性化合物。研究结果如下:1)Babirusas在吃椰子之前总是嗅一下切好的椰子表面。然后,他们挖出了中果皮的基部,那里的纤维与下颚门齿相比明显较少,他们吃掉了中果皮基部比中果皮顶端多7.6倍的表面积。2)未成熟中果皮基部的断裂负荷较低。3)基础样品的气相色谱-质谱(GC-MS)图谱显示2-甲基丁醛和3-甲基丁醛的峰面积较大。综上所述,巴比沙虫偏爱未成熟的椰子中果皮基部,偏爱的基部在硬度和挥发谱上具有明显的特征,其特征可能是2-甲基丁醛和3-甲基丁醛的存在。
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引用次数: 0
Observation of Infanticide in the Particolored Flying Squirrel (Hylopetes alboniger) from a Forest in Northeastern Bangladesh 孟加拉东北部森林颗粒鼯鼠(Hylopetes alboniger)杀婴行为观察
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-06-02 DOI: 10.3106/ms2020-0098
Sabit Hasan, Hassan Al-Razi, Tanvir Ahmed, Habibon Naher, S. Muzaffar
Abstract. Infanticide, the intentional killing of conspecific infants, has been observed widely in mammals, including squirrels. Several ground squirrels revealed this behavioral anomaly, yet no report has been published on the flying squirrels. We report an observation of killing an infant of the particolored flying squirrel (Hylopetes alboniger) by a conspecific adult intruder in Satchari National Park of northeast Bangladesh. Among the several adaptive explanations for infanticide, our observations point to sexual selection in males that confers a competitive advantage by making females receptive. However, the resource competition hypothesis, where the intruder's offsprings gain access to resources as a result of the infanticide cannot be ruled out. Extensive studies are needed to document the extent of infanticide in flying squirrels and their adaptive significance.
摘要杀害婴儿,即故意杀害同种婴儿,在包括松鼠在内的哺乳动物中已被广泛观察到。几只地松鼠揭示了这种行为异常,但还没有关于飞松鼠的报告发表。我们报道了在孟加拉国东北部的萨查里国家公园,一只同种成年入侵者杀死了一只特殊飞鼠(Hylopetes alboniger)的婴儿。在对杀婴的几种适应性解释中,我们的观察指出,男性的性选择通过让女性接受而赋予竞争优势。然而,不能排除资源竞争假说,即入侵者的后代因杀婴而获得资源。需要进行广泛的研究来记录飞松鼠杀婴的程度及其适应意义。
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引用次数: 0
Spatial Genetic Structure of the Sika Deer (Cervus nippon) Population on Yakushima: Significant Genetic Differentiation on a Small Island 屋久岛梅花鹿种群的空间遗传结构:一个小岛上显著的遗传分化
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-06-02 DOI: 10.3106/ms2020-0088
Chisato Terada, T. Yahara, Arika Kuroiwa, T. Saitoh
Abstract. The sika deer population on Yakushima Island exhibits high genetic diversity despite the small size of the island. We hypothesized that the high genetic diversity of the population had been maintained by the population structure, which included several subpopulations among which gene flow was limited. To test this hypothesis, we analyzed the spatial genetic structure of the population using 12 microsatellite loci. Two and four subpopulations were detected by STRUCTURE (stN and stS) and GENELAND (glN, glE, glS, and glW) software, respectively. The basic genetic structure assigned by STRUCTURE was supported by GENELAND, while stN and stS were further separated into two subpopulations (glN and glE; glS and glW, respectively) by GENELAND. All pairwise genetic differentiations between the two and four subpopulations were significant. These results demonstrated that the Yakushima population was structured into genetically distinct subpopulations. Although the location of the western boundary between stN and stS corresponded with a large river, no landscape or biological feature could be identified for the eastern boundary. We discussed the relationships between the genetic structure and management units designed by the local government and concluded that the Yakushima population should be managed based on their spatial population structures considering multiple time scales.
摘要屋久岛上的梅花鹿种群尽管面积很小,但遗传多样性很高。我们假设种群结构保持了种群的高度遗传多样性,其中包括几个基因流动有限的亚群。为了验证这一假设,我们使用12个微卫星位点分析了群体的空间遗传结构。STRUCTURE(stN和stS)和GENELAND(glN、glE、glS和glW)软件分别检测到两个和四个亚群。structure分配的基本遗传结构得到了GENELAND的支持,而stN和stS被GENELAND进一步分离为两个亚群(分别为glN和glE;glS和glW)。两个和四个亚群之间的所有成对遗传差异都是显著的。这些结果表明,屋久岛种群被构造成遗传上不同的亚群。尽管stN和stS之间的西部边界的位置与一条大河相对应,但无法确定东部边界的景观或生物特征。我们讨论了遗传结构与地方政府设计的管理单位之间的关系,得出结论:屋久岛种群应根据其空间种群结构进行管理,并考虑多个时间尺度。
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引用次数: 0
Mitochondrial DNA Haplotypes of Killer Whales around Hokkaido, Japan 日本北海道虎鲸线粒体DNA单倍型
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-06-02 DOI: 10.3106/ms2020-0072
Y. Mitani, Yuki F. Kita, S. Saino, M. Yoshioka, Hiroshi Ohizumi, Fumio Nakahara
Abstract. In this study, we examined a genetic variation of killer whales, Orcinus orca, from off the coast of Hokkaido, Japan, by sequencing the D-loop and cytochrome b (Cyt-b) regions of the mitochondrial genome. Three D-loop and two Cyt-b haplotypes were identified from eight skin biopsies. These five haplotypes had been previously deposited at GenBank and the International Nucleotide Sequence Database Collaboration (INSDC). Two D-loop and one Cyt-b haplotypes were consistent with the marine mammal-eating “Transient” ecotype previously reported in Japanese waters. One D-loop and one Cyt-b haplotypes were identified as the fish-eating “Resident” or “Offshore” ecotype that is the first record of this ecotype in Japanese waters. Our study showed that different ecotypes exist in Japanese waters, contributing to the conservation and management of killer whales.
摘要在这项研究中,我们通过对线粒体基因组的D环和细胞色素b(Cyt-b)区域进行测序,检测了来自日本北海道海岸的虎鲸的基因变异。从八个皮肤活检中鉴定出三个D-环和两个Cyt-b单倍型。这五个单倍型先前已存放在GenBank和国际核苷酸序列数据库合作组织(INSDC)。两个D-环和一个Cyt-b单倍型与先前在日本水域报道的以海洋哺乳动物为食的“瞬态”生态型一致。一个D-环和一个Cyt-b单倍型被鉴定为以鱼类为食的“居民”或“近海”生态型,这是日本水域首次记录到这种生态型。我们的研究表明,日本水域存在不同的生态型,有助于虎鲸的保护和管理。
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引用次数: 2
Characterization of Molecular Markers of Testicular Cells in Red Pandas (Ailurus fulgens styani) 红熊猫睾丸细胞分子标记的鉴定
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-06-02 DOI: 10.3106/ms2020-0080
J. An, Ling He, R. Hou, Z. Cai, Dong-Hui Wang, Ke-Yu Shi, Songrui Liu, Chanjuan Yue, Yu-liang Liu
Abstract. Self-sustained populations of captive red panda were challenged by low reproductive success rate. Defining the different types of testicular cell and increasing the knowledge of male fertility was critical for the improvement of reproductive efficiency in red panda captive populations. Here, we firstly report the histological structure in red panda testes at various ages. Besides, our data also showed that markers for red panda testicular cells including ITGA6, PLZF, THY1, VASA, DAZL, GATA4, VASA, and αSMA were expressed in adult testis tissue. To further examine the localizations of ITGA6, VASA, VIM, and αSMA, the immunohistochemical analysis was performed and the result showed the typical staining patterns of undifferentiated spermatogonia, multiple types of germ cells, Sertoli cells, and peritubular myoid cells (PMCs), respectively. For the testicular tissue digestion, two-step enzyme digestion was used to obtain the cell suspension. The red panda Sertoli cells, expressing Sertoli cell marker VIM, were cultured and conserved in this study, which can be used for red panda Sertoli cell establishment and as the feeder cells for red panda spermatogonial stem cells (SSCs) growing.
摘要圈养大熊猫的自我维持种群受到繁殖成功率低的挑战。明确不同类型的睾丸细胞,增加对雄性生殖能力的了解,对于提高圈养大熊猫种群的生殖效率至关重要。本文首次报道了不同年龄大熊猫睾丸的组织学结构。此外,我们的数据还显示,红熊猫睾丸细胞的标志物,包括ITGA6、PLZF、THY1、VASA、DAZL、GATA4、VASA和αSMA,在成年睾丸组织中表达。为了进一步检测ITGA6、VASA、VIM和αSMA的定位,进行了免疫组织化学分析,结果分别显示了未分化精原细胞、多种生殖细胞、支持细胞和管周类肌细胞(PMCs)的典型染色模式。对于睾丸组织消化,使用两步酶消化来获得细胞悬浮液。本研究对表达支持细胞标志物VIM的大熊猫支持细胞进行了培养和保存,可用于建立大熊猫的支持细胞,也可作为大熊猫精原干细胞(SSCs)生长的饲养细胞。
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引用次数: 0
Can Video Traps Reliably Detect Animals? Implications for the Density Estimation of Animals without Individual Recognition 视频陷阱能可靠地检测动物吗?对未经个体识别的动物密度估计的启示
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-06-02 DOI: 10.3106/ms2020-0055
Gota Yajima, Yoshihiro Nakashima
Abstract. Several statistical models have recently been developed to estimate animal density using camera trappings without individual animal recognition. However, most models assume that detection by camera traps of animals passing a specific area of the camera view is perfect. A recently developed REST model (Nakashima et al. 2018; Journal of Applied Ecology 55: 735–744) also depends on the trapping rates and staying times within a specific area. We tested whether commercial camera traps provided unbiased estimates of these parameters by conducting an experimental trial using a domestic dog in a city park in Japan. Additionally, we tested the effects of camera angle on the estimation of these parameters using the Bushnell camera. The Bushnell camera captured the dog 96% of the time, while the Ltl-Acorn camera missed about half of his passes. The staying time was underestimated by 4% using the Bushnell and overestimated by 25% using the Ltl-Acorn camera. The bias in density estimation was < 10% using the Bushnell camera. Camera angle did not affect detection probability, while the downward-angled cameras underestimated staying time due to the delayed trigger. We hope to share the results with manufacturers to make camera traps more suitable for animal density estimation.
摘要最近已经开发了几种统计模型,在没有个体动物识别的情况下使用相机捕捉来估计动物密度。然而,大多数模型认为,通过相机捕捉器对经过相机视图特定区域的动物的检测是完美的。最近开发的REST模型(Nakashima等人,2018;《应用生态学杂志》55:735-744)也取决于特定区域内的捕获率和停留时间。我们在日本的一个城市公园里用一只家狗进行了一项实验试验,测试了商业相机陷阱是否能提供对这些参数的无偏估计。此外,我们使用Bushnell相机测试了相机角度对这些参数估计的影响。布什内尔的摄像机96%的时间都捕捉到了这只狗,而Acorn中尉的摄像机则错过了它大约一半的传球。使用Bushnell相机低估了4%的停留时间,使用Ltl Acorn相机高估了25%。使用Bushnell相机进行密度估计时的偏差小于10%。相机角度不影响检测概率,而向下角度的相机由于延迟触发而低估了停留时间。我们希望与制造商分享结果,使相机陷阱更适合动物密度估计。
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引用次数: 4
Preface 前言
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-05-05 DOI: 10.3106/46-2-e
Y. Tsuji, H. Enari
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引用次数: 1
Human Effects on Habitat Use of Japanese Macaques (Macaca fuscata): Importance of Forest Edges 人类对日本猕猴栖息地利用的影响:森林边缘的重要性
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-16 DOI: 10.3106/ms2020-0076
Hiroshi Ebihara, S. Takatsuki
Abstract. Habitats of the Japanese macaque (Macaca fuscata) have been modified by human activities such as deforestation, conifer plantation, agriculturalization, and forest fragmentation. Such modifications likely affect habitat use of the macaques. We examined the habitat use of two macaque troops: a “forest troop” and a “cropland troop”. We focused on forest edges, which have not been previously categorized as a habitat type. Both troops frequently used deciduous broad-leaved forest in autumn and forest edges in summer. The forest troop frequently used forest-grassland edges, whereas the cropland troop frequently used forest-cropland edges. The selection index for the deciduous broad-leaved forest of the cropland troop exhibited significantly higher values than those of the forest troop in summer, autumn, and winter. Since the Japanese macaque is a forest-dweller and tends to avoid open areas, both troops may have used forests more frequently. Meanwhile, a decline in food resources in the forest due to the establishment of conifer plantations and an increase in food resources due to agriculturalization may have led to more frequent use of forest edges by the macaques. Forest edges should be treated as an independent habitat for accurate assessment of macaque habitat use.
摘要日本猕猴(Macaca fuscata)的栖息地已被人类活动所改变,如森林砍伐、针叶树种植、农业化和森林破碎化。这种改变可能会影响猕猴的栖息地使用。我们研究了两支猕猴部队的栖息地使用情况:一支“森林部队”和一支“农田部队”。我们关注的是森林边缘,以前没有将其归类为栖息地类型。两支部队在秋季经常使用落叶阔叶林,在夏季经常使用森林边缘。森林部队经常使用森林草原边缘,而农田部队经常使用林地边缘。夏、秋、冬三季,农田部队落叶阔叶林的选择指数均显著高于森林部队。由于日本猕猴是森林居民,并且倾向于避开开阔地带,因此两支部队可能都更频繁地使用森林。与此同时,由于针叶树种植园的建立,森林中的粮食资源减少,而农业化,粮食资源增加,这可能导致猕猴更频繁地使用森林边缘。森林边缘应被视为一个独立的栖息地,以便准确评估猕猴栖息地的使用情况。
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引用次数: 3
Genetic Assessment on the Origin of Alien Macaques in the Boso Peninsula in Japan 日本博索半岛外来猕猴起源的遗传评价
IF 1 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-16 DOI: 10.3106/ms2020-0078
Y. Kawamoto
Abstract. Japanese macaques and alien macaques have hybridized in the Boso Peninsula, Chiba Prefecture, Japan. In this study, the origin of the alien species was investigated by molecular assessments with mitochondrial DNA (mtDNA) and Y-chromosome genes. Maternal origin was assessed by comparing mtDNA sequence records. The results suggested that the alien species in the southern part of peninsula originated from the rhesus macaques in eastern China. Y-chromosome assessments with three microsatellite (Y-STR) loci detected a unique haplotype that is distributed in Japanese macaque habitats. Its origin was assessed by the TSPY (testis-specific protein on Y-chromosome) gene, suggesting the possibility of the involvement of long-tailed macaques in the Indochina region or rhesus macaques different from known source. Further investigation of historical documents and interviews disclosed the existence of a facility of long-tailed macaques planned for vaccine production in the past. This study presented novel evidence that the hybridization of Japanese macaques in the Boso Peninsula has the possibility to associate not only with rhesus macaques, but also with long-tailed macaques from the Indochina region. It is important to further monitor the status of Japanese macaques and changes in their hybridization in the peninsula for future conservation purposes.
摘要日本猕猴和外来猕猴在日本千叶县博索半岛杂交。在本研究中,通过线粒体DNA(mtDNA)和Y染色体基因的分子评估来研究外来物种的起源。通过比较mtDNA序列记录来评估母体来源。结果表明,半岛南部的外来物种起源于中国东部的恒河猴。用三个微卫星(Y-STR)基因座进行的Y染色体评估检测到一种独特的单倍型,该单倍型分布在日本猕猴的栖息地。通过TSPY(Y染色体上的测试特异性蛋白)基因评估其来源,表明中印地区的长尾猕猴或与已知来源不同的恒河猴可能参与其中。对历史文件的进一步调查和采访揭示了过去计划生产疫苗的长尾猕猴设施的存在。这项研究提供了新的证据,表明博索半岛日本猕猴的杂交不仅有可能与恒河猴联系在一起,也有可能与中印地区的长尾猕猴联系在一起。为了未来的保护目的,进一步监测日本猕猴的状况及其在半岛上杂交的变化是很重要的。
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引用次数: 0
期刊
Mammal Study
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