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Emerging Technologies for Multiphoton Writing and Reading of Polymeric Architectures for Biomedical Applications. 用于生物医学应用的聚合物结构的多光子写入和读取的新兴技术。
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 Epub Date: 2025-01-28 DOI: 10.1146/annurev-bioeng-110122-015901
Jieliyue Sun, Sixian Jia, Chenhui Shao, Michelle R Dawson, Kimani C Toussaint

The rise in popularity of two-photon polymerization (TPP) as an additive manufacturing technique has impacted many areas of science and engineering, particularly those related to biomedical applications. Compared with other fabrication methods used for biomedical applications, TPP offers 3D, nanometer-scale fabrication dexterity (free-form). Moreover, the existence of turnkey commercial systems has increased accessibility. In this review, we discuss the diversity of biomedical applications that have benefited from the unique features of TPP. We also present the state of the art in approaches for patterning and reading 3D TPP-fabricated structures. The reading process influences the fidelity for both in situ and ex situ characterization methods. We also review efforts to leverage machine learning to facilitate process control for TPP. Finally, we conclude with a discussion of both the current challenges and exciting opportunities for biomedical applications that lie ahead for this intriguing and emerging technology.

双光子聚合(TPP)作为一种增材制造技术的普及已经影响了许多科学和工程领域,特别是与生物医学应用相关的领域。与用于生物医学应用的其他制造方法相比,TPP提供3D,纳米级制造灵活性(自由形式)。此外,交钥匙商业系统的存在增加了可访问性。在这篇综述中,我们讨论了从TPP的独特特性中受益的生物医学应用的多样性。我们还介绍了3D tpp制造结构的模式/写作和阅读方法的最新进展。读取过程对原位和非原位表征方法的保真度都有影响。我们还审查了利用机器学习促进TPP过程控制的努力。最后,我们以讨论当前的挑战和令人兴奋的机会来结束生物医学应用,这一有趣的新兴技术就在前面。
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引用次数: 0
Leveraging Preclinical Modeling for Clinical Advancements in Single Ventricle Physiology: Spotlight on the Fontan Circulation. 利用临床前模型促进单心室生理学的临床进展:聚焦于方丹循环。
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 Epub Date: 2025-03-03 DOI: 10.1146/annurev-bioeng-102723-013709
Andreas Escher, Carlos Aguilar Vega, Markus A Horvath, Caglar Ozturk, Ellen T Roche

Preclinical modeling of human circulation has been instrumental in advancing cardiovascular medicine. Alongside clinical research, the armamentarium of computational (e.g., lumped parameter or computational fluid dynamics) and experimental (e.g., benchtop or animal) models have substantially enhanced our understanding of risk factors and root causes for circulatory diseases. Recent innovations are further disrupting the boundaries of these preclinical models toward patient-specific simulations, surgical planning, and postoperative outcome prediction. This fast-paced progress empowers preclinical modeling to increasingly delve into the intricacies of single ventricle physiology, a rare and heterogeneous congenital heart disease that remains inadequately understood. Here, we review the current landscape of preclinical modeling (computational and experimental) proposed to advance clinical management of a prominent yet complex subset of single ventricle physiology: patients who have undergone Fontan-type surgical corrections. Further, we explore recent innovations and emerging technologies that are poised to bridge the gap between preclinical Fontan modeling and clinical implementation.

人体循环的临床前建模在推进心血管医学方面发挥了重要作用。除了临床研究外,计算模型(例如,集总参数或计算流体动力学)和实验模型(例如,台式或动物)的装备大大增强了我们对循环系统疾病的危险因素和根本原因的理解。最近的创新进一步打破了这些临床前模型在患者特异性模拟、手术计划和术后结果预测方面的界限。这种快节奏的进展使临床前建模能够越来越深入地研究单心室生理学的复杂性,这是一种罕见的异质先天性心脏病,目前仍未得到充分的了解。在这里,我们回顾了临床前建模(计算和实验)的现状,提出了推进单心室生理学的一个突出而复杂的亚群的临床管理:接受fontan型手术矫正的患者。此外,我们探讨了最近的创新和新兴技术,这些技术有望弥合临床前Fontan建模和临床实施之间的差距。
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引用次数: 0
Systems Biology of the Cancer Cell. 癌细胞系统生物学
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 Epub Date: 2024-12-17 DOI: 10.1146/annurev-bioeng-103122-030552
Kevin A Janes, Matthew J Lazzara

Questions in cancer have engaged systems biologists for decades. During that time, the quantity of molecular data has exploded, but the need for abstractions, formal models, and simplifying insights has remained the same. This review brings together classic breakthroughs and recent findings in the field of cancer systems biology, focusing on cancer cell pathways for tumorigenesis and therapeutic response. Cancer cells mutate and transduce information from their environment to alter gene expression, metabolism, and phenotypic states. Understanding the molecular architectures that make each of these steps possible is a long-term goal of cancer systems biology pursued by iterating between quantitative models and experiments. We argue that such iteration is the best path to deploying targeted therapies intelligently so that each patient receives the maximum benefit for their cancer.

几十年来,癌症问题一直困扰着系统生物学家。在此期间,分子数据的数量呈爆炸式增长,但对抽象、形式化模型和简化见解的需求保持不变。这篇综述汇集了癌症系统生物学领域的经典突破和最新发现,重点是肿瘤发生和治疗反应的癌细胞途径。癌细胞突变并从其环境中转导信息来改变基因表达、代谢和表型状态。了解使这些步骤成为可能的分子结构是癌症系统生物学通过在定量模型和实验之间反复追求的长期目标。我们认为,这种迭代是智能部署靶向治疗的最佳途径,这样每个患者都能从他们的癌症中获得最大的益处。
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引用次数: 0
Replicating Host-Microbiome Interactions: Harnessing Organ-on-a-Chip and Organoid Technologies to Model Vaginal and Lung Physiology. 复制宿主-微生物组相互作用:利用器官芯片和类器官技术来模拟阴道和肺部生理。
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 Epub Date: 2025-02-19 DOI: 10.1146/annurev-bioeng-110122-122343
Jade Coxon, Emily Linder, Caden Sweet, Scott Magness, Leopold Green

Organ-on-a-chip (OOC) and organoid technologies are at the forefront of developing sophisticated in vitro systems that replicate complex host-microbiome interactions, including those associated with vaginal health and lung infection. We explore how these technologies provide insights into host-microbiome and host-pathogen interactions and the associated immune responses. Integrating omics data and high-resolution imaging in analyzing these models enhances our understanding of host-microbiome interactions' temporal and spatial aspects, paving the way for new diagnostic and treatment strategies. This review underscores the potential of OOC and organoid technologies in elucidating the complexities of vaginal health and lung disease, which have received less attention than other organ systems in recent organoid and OCC studies. Yet, each system presents notable characteristics, rendering them ideal candidates for these designs. Additionally, this review describes the key factors associated with each organ system and how to choose the technology setup to replicate human physiology.

器官芯片(OOC)和类器官技术处于开发复杂体外系统的前沿,这些系统可以复制复杂的宿主-微生物相互作用,包括与阴道健康和肺部感染相关的相互作用。我们将探讨这些技术如何为宿主-微生物组和宿主-病原体相互作用以及相关的免疫反应提供见解。整合组学数据和高分辨率成像分析这些模型增强了我们对宿主-微生物相互作用的时间和空间方面的理解,为新的诊断和治疗策略铺平了道路。这篇综述强调了OOC和类器官技术在阐明阴道健康和肺部疾病的复杂性方面的潜力,这在最近的类器官和OCC研究中受到的关注少于其他器官系统。然而,每个系统都有显著的特点,使它们成为这些设计的理想候选者。此外,本文还介绍了与每个器官系统相关的关键因素以及如何选择复制人体生理的技术设置。
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引用次数: 0
Designer Organs: Ethical Genetic Modifications in the Era of Machine Perfusion. 设计器官:机器灌注时代的伦理基因修饰。
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 Epub Date: 2025-01-28 DOI: 10.1146/annurev-bioeng-062824-121925
Irina Filz von Reiterdank, Raphaela Bento, Insoo Hyun, Rosario Isasi, Susan M Wolf, J Henk Coert, Aebele B Mink van der Molen, Biju Parekkadan, Korkut Uygun

Gene therapy is a rapidly developing field, finally yielding clinical benefits. Genetic engineering of organs for transplantation may soon be an option, thanks to convergence with another breakthrough technology, ex vivo machine perfusion (EVMP). EVMP allows access to the functioning organ for genetic manipulation prior to transplant. EVMP has the potential to enhance genetic engineering efficiency, improve graft survival, and reduce posttransplant complications. This will enable genetic modifications with a vast variety of applications, while raising questions on the ethics and regulation of this emerging technology. This review provides an in-depth discussion of current methodologies for delivering genetic vectors to transplantable organs, particularly focusing on the enabling role of EVMP. Organ-by-organ analysis and key characteristics of various vector and treatment options are assessed. We offer a road map for research and clinical translation, arguing that achieving scientific benchmarks while creating anticipatory governance is necessary to secure societal benefit from this technology.

基因治疗是一个快速发展的领域,最终产生了临床效益。由于与另一项突破性技术——体外机器灌注(EVMP)的融合,用于移植器官的基因工程可能很快成为一种选择。EVMP允许在移植前对功能器官进行基因操作。EVMP具有提高基因工程效率、提高移植物存活率和减少移植后并发症的潜力。这将使基因修饰具有广泛的应用,同时也提出了关于这一新兴技术的伦理和监管问题。这篇综述深入讨论了目前将遗传载体传递到可移植器官的方法,特别关注EVMP的启用作用。评估了各器官的分析和各种病媒和治疗方案的关键特征。我们为研究和临床转化提供了路线图,认为在创造预期治理的同时实现科学基准对于确保这项技术的社会效益是必要的。
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引用次数: 0
Understanding the Lymphatic System: Tissue-on-Chip Modeling. 理解淋巴系统:组织芯片建模。
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 Epub Date: 2025-01-22 DOI: 10.1146/annurev-bioeng-110222-100246
William J Polacheck, J Brandon Dixon, Wen Yih Aw

The lymphatic vasculature plays critical roles in maintaining fluid homeostasis, transporting lipid, and facilitating immune surveillance. A growing body of work has identified lymphatic dysfunction as contributing to the severity of myriad diseases and to systemic inflammation, as well as modulating drug responses. Here, we review efforts to reconstruct lymphatic vessels in vitro toward establishing humanized, functional models to advance understanding of lymphatic biology and pathophysiology. We first review lymphatic endothelial cell biology and the biophysical lymphatic microenvironment, with a focus on features that are unique to the lymphatics and that have been used as design parameters for lymphatic-on-chip devices. We then discuss the state of the art for recapitulating lymphatic function in vitro, and we acknowledge limitations and challenges to current approaches. Finally, we discuss opportunities and the need for further development of microphysiological lymphatic systems to bridge the gap in model systems between lymphatic cell culture and animal physiology.

淋巴血管系统在维持体液平衡、运输脂质和促进免疫监视方面起着关键作用。越来越多的研究表明,淋巴功能障碍与许多疾病的严重程度和全身性炎症有关,也会调节药物反应。在这里,我们回顾了在体外重建淋巴管的努力,以建立人性化的功能模型,以促进对淋巴管生物学和病理生理学的理解。我们首先回顾淋巴内皮细胞生物学和生物物理淋巴微环境,重点关注淋巴管独特的特征,这些特征已被用作芯片淋巴设备的设计参数。然后,我们讨论了在体外重现淋巴功能的最新技术,并承认当前方法的局限性和挑战。最后,我们讨论了微生理淋巴系统进一步发展的机会和需求,以弥合淋巴细胞培养和动物生理学之间模型系统的差距。
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引用次数: 0
Physics-Inspired Generative Models in Medical Imaging. 医学成像中物理启发的生成模型。
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 DOI: 10.1146/annurev-bioeng-102723-013922
Dennis Hein, Afshin Bozorgpour, Dorit Merhof, Ge Wang

Physics-inspired generative models (GMs), in particular diffusion models and Poisson flow models, enhance Bayesian methods and promise great utility in medical imaging. This review examines the transformative role of such generative methods. First, a variety of physics-inspired GMs, including denoising diffusion probabilistic models, score-based diffusion models, and Poisson flow generative models (including PFGM++), are revisited, with an emphasis on their accuracy, robustness and acceleration. Then, major applications of physics-inspired GMs in medical imaging are presented, comprising image reconstruction, image generation, and image analysis. Finally, future research directions are brainstormed, including unification of physics-inspired GMs, integration with vision-language models, and potential novel applications of GMs. Since the development of generative methods has been rapid, it is hoped that this review will give peers and learners a timely snapshot of this new family of physics-driven GMs and help capitalize their enormous potential for medical imaging.

物理启发的生成模型(GMs),特别是扩散模型和泊松流模型,增强了贝叶斯方法,并承诺在医学成像中的巨大效用。这篇综述探讨了这种生成方法的变革作用。首先,重新审视了各种物理启发的gm,包括去噪扩散概率模型、基于分数的扩散模型和泊松流生成模型(包括PFGM++),重点关注了它们的准确性、鲁棒性和加速性。然后,介绍了物理启发的gm在医学成像中的主要应用,包括图像重建、图像生成和图像分析。最后,对未来的研究方向进行了头脑风暴,包括物理启发的gm的统一,与视觉语言模型的集成,以及gm的潜在新应用。由于生成方法的发展迅速,希望这篇综述能给同行和学习者一个及时的快照,这个新的家庭的物理驱动的gmms,并帮助利用他们在医学成像的巨大潜力。
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引用次数: 0
Lessons Learned and Challenges Ahead in the Translation of Implantable Microscale Sensors and Actuators. 可植入微型传感器和执行器的经验教训和未来的挑战。
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 Epub Date: 2025-02-06 DOI: 10.1146/annurev-bioeng-110122-121128
Jae Young Park, Nikolas Barrera, Tianyu Bai, Ellis Meng, Hui Fang, Hyowon Lee

Microscale sensors and actuators have been widely explored by the scientific community to augment the functionality of conventional medical implants. However, despite the many innovative concepts proposed, a negligible fraction has successfully made the leap from concept to clinical translation. This shortfall is primarily due to the considerable disparity between academic research prototypes and market-ready products. As such, it is critically important to examine the lessons learned in successful commercialization efforts to inform early-stage translational research efforts. Here, we review the regulatory prerequisites for market approval and provide a comprehensive analysis of commercially available microimplants from a device design perspective. Our objective is to illuminate both the technological advances underlying successfully commercialized devices and the key takeaways from the commercialization process, thereby facilitating a smoother pathway from academic research to clinical impact.

微型传感器和执行器已被科学界广泛探索,以增强传统医疗植入物的功能。然而,尽管提出了许多创新概念,但成功从概念到临床转化的飞跃可以忽略不计。这种不足主要是由于学术研究原型和市场就绪产品之间的巨大差距。因此,研究在成功的商业化努力中吸取的经验教训,为早期的转化研究工作提供信息,是至关重要的。在这里,我们回顾了市场批准的监管先决条件,并从设备设计的角度对商用微植入物进行了全面分析。我们的目标是阐明成功商业化设备的技术进步和商业化过程中的关键要点,从而促进从学术研究到临床影响的更顺畅的途径。
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引用次数: 0
Microfabricated Organ-Specific Models of Tumor Microenvironments. 肿瘤微环境的微结构器官特异性模型。
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 DOI: 10.1146/annurev-bioeng-110222-103522
Jeong Min Oh, Yongkuk Park, Jungwoo Lee, Keyue Shen

Despite the advances in detection, diagnosis, and treatments, cancer remains a lethal disease, claiming the lives of more than 600,000 people in the United States alone in 2024. To accelerate the development of new therapeutic strategies with improved responses, significant efforts have been made to develop microfabricated in vitro models of tumor microenvironments (TMEs) that address the limitations of animal-based cancer models. These models incorporate several advanced tissue engineering techniques to better reflect the organ- and patient-specific TMEs. Additionally, microfabricated models integrated with next-generation single-cell omics technologies provide unprecedented insights into patient's cellular and molecular heterogeneity and complexity. This review provides an overview of the recent understanding of cancer development and outlines the key TME elements that can be captured in microfabricated models to enhance their physiological relevance. We highlight the recent advances in microfabricated cancer models that reflect the unique characteristics of their organs of origin or sites of dissemination.

尽管在检测、诊断和治疗方面取得了进步,但癌症仍然是一种致命的疾病,仅在2024年,仅在美国就夺去了60多万人的生命。为了加快新的治疗策略的发展,改善反应,已经做出了重大努力,开发微制造的肿瘤微环境(TMEs)体外模型,以解决基于动物的癌症模型的局限性。这些模型结合了几种先进的组织工程技术,以更好地反映器官和患者特异性TMEs。此外,微加工模型与下一代单细胞组学技术相结合,为了解患者细胞和分子的异质性和复杂性提供了前所未有的见解。这篇综述概述了最近对癌症发展的理解,并概述了可以在微制造模型中捕获的关键TME元素,以增强其生理相关性。我们强调了反映其起源器官或传播部位独特特征的微制造癌症模型的最新进展。
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引用次数: 0
Therapeutic Ultrasound for Multimodal Cancer Treatment: A Spotlight on Breast Cancer. 多模式肿瘤的超声治疗:聚焦于乳腺癌。
IF 9.6 1区 工程技术 Q1 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-01 Epub Date: 2025-02-19 DOI: 10.1146/annurev-bioeng-103023-111151
Zehra E F Demir, Natasha D Sheybani

Cancer remains a leading cause of mortality worldwide, and the demand for improved efficacy, precision, and safety of management options has never been greater. Focused ultrasound (FUS) is a rapidly emerging strategy for nonionizing, noninvasive intervention that holds promise for the multimodal treatment of solid cancers. Owing to its versatile array of bioeffects, this technology is now being evaluated across preclinical and clinical oncology trials for tumor ablation, therapeutic delivery, radiosensitization, sonodynamic therapy, and enhancement of tumor-specific immune responses. Given the breadth of this burgeoning domain, this review places a spotlight on recent advancements in breast cancer care to exemplify the multifaceted role of FUS technology for oncology indications-outlining physical principles of FUS-mediated thermal and mechanical bioeffects, giving an overview of results from recent preclinical and clinical studies investigating FUS with and without adjunct therapeutics in primary or disseminated breast cancer settings, and offering perspectives on the future of the field.

癌症仍然是世界范围内死亡的主要原因,对提高疗效、准确性和管理选择安全性的需求从未如此之大。聚焦超声(FUS)是一种快速兴起的非电离、非侵入性介入治疗策略,有望用于实体癌的多模式治疗。由于其多种生物效应,这项技术目前正在临床前和临床肿瘤试验中进行评估,用于肿瘤消融、治疗递送、放射增敏、声动力治疗和增强肿瘤特异性免疫反应。鉴于这一新兴领域的广度,本综述将重点放在乳腺癌护理的最新进展上,以说明FUS技术在肿瘤适应症中的多方面作用——概述FUS介导的热和机械生物效应的物理原理,概述最近在原发性或弥散性乳腺癌环境中调查FUS有或没有辅助治疗的临床前和临床研究的结果。并对该领域的未来提出了看法。
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引用次数: 0
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Annual Review of Biomedical Engineering
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