Pub Date : 2024-06-13DOI: 10.12688/wellcomeopenres.22272.1
Derek Coleman
We present a genome assembly from an individual male Mystacides longicornis (cased caddisfly; Arthropoda; Insecta; Trichoptera; Leptoceridae). The genome sequence is 665.1 megabases in span. Most of the assembly is scaffolded into 20 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.75 kilobases in length.
{"title":"The genome sequence of a cased caddisfly, Mystacides longicornis (Linnaeus, 1758)","authors":"Derek Coleman","doi":"10.12688/wellcomeopenres.22272.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22272.1","url":null,"abstract":"We present a genome assembly from an individual male Mystacides longicornis (cased caddisfly; Arthropoda; Insecta; Trichoptera; Leptoceridae). The genome sequence is 665.1 megabases in span. Most of the assembly is scaffolded into 20 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.75 kilobases in length.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"26 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141347924","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-13DOI: 10.12688/wellcomeopenres.22450.1
D. Bell, David G. Long
We present a genome assembly from an individual Climacium dendroides gametophyte (the tree-moss; Bryophyta; Bryopsida; Leucodontales; Climaciaceae). The genome sequence is 413.1 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 104.86 kilobases and 124.96 kilobases in length, respectively.
{"title":"The genome sequence of the tree-moss, Climacium dendroides (Hedw.) F.Weber & D.Mohr (Climaciaceae)","authors":"D. Bell, David G. Long","doi":"10.12688/wellcomeopenres.22450.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22450.1","url":null,"abstract":"We present a genome assembly from an individual Climacium dendroides gametophyte (the tree-moss; Bryophyta; Bryopsida; Leucodontales; Climaciaceae). The genome sequence is 413.1 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 104.86 kilobases and 124.96 kilobases in length, respectively.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"29 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141347916","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.12688/wellcomeopenres.22453.1
R. Brittain, Patrick Adkins, J. Harley
We present a genome assembly from an individual Eutrigla gurnardus (the grey gurnard; Chordata; Actinopteri; Scorpaeniformes; Triglidae). The genome sequence is 680.5 megabases in span. Most of the assembly is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.51 kilobases in length.
{"title":"The genome sequence of the grey gurnard, Eutrigla gurnardus (Linnaeus, 1758)","authors":"R. Brittain, Patrick Adkins, J. Harley","doi":"10.12688/wellcomeopenres.22453.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22453.1","url":null,"abstract":"We present a genome assembly from an individual Eutrigla gurnardus (the grey gurnard; Chordata; Actinopteri; Scorpaeniformes; Triglidae). The genome sequence is 680.5 megabases in span. Most of the assembly is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.51 kilobases in length.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"7 6","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141355904","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.12688/wellcomeopenres.22422.1
Maxwell V. L. Barclay
We present a genome assembly from an individual female Cantharis flavilabris (soldier beetle; Arthropoda; Insecta; Coleoptera; Cantharidae). The genome sequence is 348.3 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 17.5 kilobases in length. Gene annotation of this assembly on Ensembl identified 22,711 protein coding genes.
{"title":"The genome sequence of a soldier beetle, Cantharis flavilabris Fallén, 1807","authors":"Maxwell V. L. Barclay","doi":"10.12688/wellcomeopenres.22422.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22422.1","url":null,"abstract":"We present a genome assembly from an individual female Cantharis flavilabris (soldier beetle; Arthropoda; Insecta; Coleoptera; Cantharidae). The genome sequence is 348.3 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 17.5 kilobases in length. Gene annotation of this assembly on Ensembl identified 22,711 protein coding genes.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"17 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141359398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.12688/wellcomeopenres.22268.1
Derek Coleman
We present a genome assembly from an individual male Ceraclea dissimilis (cased caddisfly; Arthropoda; Insecta; Trichoptera; Leptoceridae). The genome sequence is 452.7 megabases in span. Most of the assembly is scaffolded into 25 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.87 kilobases in length.
{"title":"The genome sequence of a cased caddisfly, Ceraclea dissimilis (Stephens, 1836)","authors":"Derek Coleman","doi":"10.12688/wellcomeopenres.22268.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22268.1","url":null,"abstract":"We present a genome assembly from an individual male Ceraclea dissimilis (cased caddisfly; Arthropoda; Insecta; Trichoptera; Leptoceridae). The genome sequence is 452.7 megabases in span. Most of the assembly is scaffolded into 25 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.87 kilobases in length.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"27 17","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141355628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.12688/wellcomeopenres.22425.1
Maxwell V. L. Barclay, Danaë Vassiliades, Will Bayfield Farrell, Joana Cristóvão, Keita Matsumoto, Michael Geiser, Mark G. Telfer
We present a genome assembly from an individual male Platypus cylindrus (the oak pinhole borer; Arthropoda; Insecta; Coleoptera; Curculionidae). The genome sequence is 147.5 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 19.29 kilobases in length. Gene annotation of this assembly on Ensembl identified 13,468 protein coding genes.
我们展示了一个雄性鸭嘴兽（橡树针孔蛀虫；节肢动物门；昆虫纲；鞘翅目；蛀虫科）个体的基因组序列。基因组序列跨度为 147.5 兆字节。大部分序列组装成 8 个染色体假分子支架，包括 X 和 Y 性染色体。线粒体基因组也已组装完成，长度为 19.29 千碱基。在 Ensembl 上对该基因组进行的基因注释确定了 13,468 个蛋白质编码基因。
{"title":"The genome sequence of the oak pinhole borer, Platypus cylindrus Fabricius, 1792","authors":"Maxwell V. L. Barclay, Danaë Vassiliades, Will Bayfield Farrell, Joana Cristóvão, Keita Matsumoto, Michael Geiser, Mark G. Telfer","doi":"10.12688/wellcomeopenres.22425.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22425.1","url":null,"abstract":"We present a genome assembly from an individual male Platypus cylindrus (the oak pinhole borer; Arthropoda; Insecta; Coleoptera; Curculionidae). The genome sequence is 147.5 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 19.29 kilobases in length. Gene annotation of this assembly on Ensembl identified 13,468 protein coding genes.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"4 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141357686","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.12688/wellcomeopenres.22451.1
D. Bell, Liz Kungu
We present a genome assembly from an individual Isothecium myosuroides gametophyte (the slender mouse-tail moss; Bryophyta; Bryopsida; Hypnales; Lembophyllaceae). The genome sequence is 388.3 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 104.59 kilobases and 125.02 kilobases in length, respectively.
{"title":"The genome sequence of the slender mouse-tail moss, Isothecium myosuroides Brid., 1827 (Lembophyllaceae)","authors":"D. Bell, Liz Kungu","doi":"10.12688/wellcomeopenres.22451.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22451.1","url":null,"abstract":"We present a genome assembly from an individual Isothecium myosuroides gametophyte (the slender mouse-tail moss; Bryophyta; Bryopsida; Hypnales; Lembophyllaceae). The genome sequence is 388.3 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 104.59 kilobases and 125.02 kilobases in length, respectively.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"43 24","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141355173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.12688/wellcomeopenres.22424.1
Maxwell V. L. Barclay, Danaë Vassiliades, William P. Bayfield-Farrell, Joana Cristóvão, Keita Matsumoto, Michael Geiser
We present a genome assembly from an individual female Lochmaea capreae (the willow leaf beetle; Arthropoda; Insecta; Coleoptera; Chrysomelidae). The genome sequence is 534.7 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 18.85 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,254 protein coding genes.
{"title":"The genome sequence of the willow leaf beetle, Lochmaea capreae Linnaeus, 1758","authors":"Maxwell V. L. Barclay, Danaë Vassiliades, William P. Bayfield-Farrell, Joana Cristóvão, Keita Matsumoto, Michael Geiser","doi":"10.12688/wellcomeopenres.22424.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22424.1","url":null,"abstract":"We present a genome assembly from an individual female Lochmaea capreae (the willow leaf beetle; Arthropoda; Insecta; Coleoptera; Chrysomelidae). The genome sequence is 534.7 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 18.85 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,254 protein coding genes.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"11 6","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141359349","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.12688/wellcomeopenres.22426.1
D. Bell, David G. Long
We present a haploid genome assembly from an individual Antitrichia curtipendula gametophyte (the pendulous wing-moss; Bryophyta; Bryopsida; Leucodontales; Leucodontaceae). The genome sequence is 400.5 megabases in span. Most of the assembly is scaffolded into 10 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 106.51 kilobases and 124.87 kilobases in length, respectively.
{"title":"The genome sequence of the pendulous wing-moss, Antitrichia curtipendula (Hedw.) Brid. (Leucodontaceae)","authors":"D. Bell, David G. Long","doi":"10.12688/wellcomeopenres.22426.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.22426.1","url":null,"abstract":"We present a haploid genome assembly from an individual Antitrichia curtipendula gametophyte (the pendulous wing-moss; Bryophyta; Bryopsida; Leucodontales; Leucodontaceae). The genome sequence is 400.5 megabases in span. Most of the assembly is scaffolded into 10 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 106.51 kilobases and 124.87 kilobases in length, respectively.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"30 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141358574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.12688/wellcomeopenres.21378.1
P. Puri, Siaa Girotra, Arpita Ghosh
Background Due to demographic and epidemiological shifts, people are living until older ages with more morbidities. These morbidities often have shared pathophysiology, which leads to a rise in coexisting health issues known as 'multimorbidity'. Primary care studies and disease burden surveys have multiplied, unveiling varied aspects of multimorbidity, yet with inconsistent definitions and methods. This protocol aims to guide an in-depth and comprehensive exploration of multimorbidity research in India through a scoping review, to understand the extent, range, and nature of research on multimorbidity in India. Methods This study will comprehensively search the PubMed/Medline, Cochrane, and Embase databases employing a well-defined strategy. All studies published in English will be considered, provided the focus is multimorbidity and there is information specifically from India. Two reviewers will independently screen the search outcomes, and data extraction will include multimorbidity definitions, data and methods, patterns, risk factors and outcomes. The research will follow the Joanna Briggs Institute framework and adhere to PRISMA-P 2015 guidelines for reporting. Descriptive statistics and narrative synthesis will be used to summarize findings. Conclusions The findings from this review will provide crucial insights for healthcare planning, evidence-based decisions, and policy shaping in India's evolving health landscape.
{"title":"Overview of multimorbidity research in India: a scoping review","authors":"P. Puri, Siaa Girotra, Arpita Ghosh","doi":"10.12688/wellcomeopenres.21378.1","DOIUrl":"https://doi.org/10.12688/wellcomeopenres.21378.1","url":null,"abstract":"Background Due to demographic and epidemiological shifts, people are living until older ages with more morbidities. These morbidities often have shared pathophysiology, which leads to a rise in coexisting health issues known as 'multimorbidity'. Primary care studies and disease burden surveys have multiplied, unveiling varied aspects of multimorbidity, yet with inconsistent definitions and methods. This protocol aims to guide an in-depth and comprehensive exploration of multimorbidity research in India through a scoping review, to understand the extent, range, and nature of research on multimorbidity in India. Methods This study will comprehensively search the PubMed/Medline, Cochrane, and Embase databases employing a well-defined strategy. All studies published in English will be considered, provided the focus is multimorbidity and there is information specifically from India. Two reviewers will independently screen the search outcomes, and data extraction will include multimorbidity definitions, data and methods, patterns, risk factors and outcomes. The research will follow the Joanna Briggs Institute framework and adhere to PRISMA-P 2015 guidelines for reporting. Descriptive statistics and narrative synthesis will be used to summarize findings. Conclusions The findings from this review will provide crucial insights for healthcare planning, evidence-based decisions, and policy shaping in India's evolving health landscape.","PeriodicalId":508490,"journal":{"name":"Wellcome Open Research","volume":"13 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141356183","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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