首页 > 最新文献

Comparative Immunology Microbiology and Infectious Diseases最新文献

英文 中文
Corrigendum to “Comparative efficacy of recombinant VP6 protein based in-house Latex Agglutination test with other diagnostic assays for detection of Rotavirus A from calves, piglets and children” [Comp. Immunol. Microbiol. Infect. Dis. 119 (2025) 102336] “基于重组VP6蛋白的内部乳胶凝集试验与其他诊断方法检测小牛、仔猪和儿童轮状病毒A的比较效果”的勘误表[p. immuno1]。Microbiol。感染。法令119(2025)102336]。
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-04-28 DOI: 10.1016/j.cimid.2025.102339
Bilal Ahmad Malla , Zunjar Baburao Dubal , Ajay Kumar , Obli Rajendran VinodhKumar , Aquil Mohmad , Pashupathi Mani , Kaushal Kishor Rajak , Kiran Narayan Bhilegaonkar
{"title":"Corrigendum to “Comparative efficacy of recombinant VP6 protein based in-house Latex Agglutination test with other diagnostic assays for detection of Rotavirus A from calves, piglets and children” [Comp. Immunol. Microbiol. Infect. Dis. 119 (2025) 102336]","authors":"Bilal Ahmad Malla , Zunjar Baburao Dubal , Ajay Kumar , Obli Rajendran VinodhKumar , Aquil Mohmad , Pashupathi Mani , Kaushal Kishor Rajak , Kiran Narayan Bhilegaonkar","doi":"10.1016/j.cimid.2025.102339","DOIUrl":"10.1016/j.cimid.2025.102339","url":null,"abstract":"","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"120 ","pages":"Article 102339"},"PeriodicalIF":2.0,"publicationDate":"2025-04-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144049692","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The impact of stray animal populations on public health in Naples, Italy: A preliminary study on antimicrobial resistance on the road 意大利那不勒斯流浪动物种群对公共卫生的影响:道路上抗微生物药物耐药性的初步研究
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-04-26 DOI: 10.1016/j.cimid.2025.102344
Francesca Paola Nocera , Sinem Arslan , Rossana Schena , Francesca Pizzano , Fatima Mourabiti , Silvia Cappiello , Cristina Di Palma , Barbara Lamagna , Marina Pompameo , Luisa De Martino
The rise of antimicrobial resistance poses a significant public health challenge, with an increasing number of organisms developing resistance to many antimicrobial agents used to treat infections in humans and animals. This study investigated the role of stray dogs and cats as sentinel animals in the urban environment. Therefore, the sampling of healthy skin was performed to isolate bacterial species present and assess their antimicrobial resistance profile. A total of 690 swabs were collected, comprising 351 cutaneous swabs from dogs and 339 from cats. A total of 770 strains were identified, including 381 Gram-positive bacteria (94 %) and 19 Gram-negative bacteria (6 %) from dogs, and 355 Gram-positive bacteria (97 %) and 11 Gram-negative bacteria (3 %) from cats. In dogs, Staphylococcus pseudintermedius was the most frequently isolated Gram-positive bacterium, with 53 strains identified. Meanwhile, in cats, coagulase-negative staphylococci were the most common, with Staphylococcus felis being the predominant species, represented by 50 strains. Among the isolated Gram-negative bacteria in both animal species, E. coli was predominant. Among the recovered Gram-positive bacteria, multidrug resistance was observed in 105 out of 129 (81.4 %) canine isolates and 87 out of 143 (60.8 %) feline isolates. Additionally, phenotypic resistance to penicillin, oxacillin, and cefoxitin in 42 out of 53 (79.2 %) S. pseudintermedius strains and 8 out of 50 (16.0 %) S. felis strains was identified, suggesting the presence of the methicillin resistance gene. The above findings underscore the need for stricter monitoring of antibiotic resistance specifically in stray dogs and cats which can act as reservoirs for resistant bacteria.
抗菌素耐药性的上升对公共卫生构成重大挑战,越来越多的生物体对用于治疗人类和动物感染的许多抗菌素产生耐药性。本研究调查了流浪狗和流浪猫在城市环境中作为哨兵动物的作用。因此,对健康皮肤进行取样,以分离存在的细菌种类并评估其抗菌素耐药性。共收集了690份拭子,其中351份来自狗,339份来自猫。共检出菌株770株,其中犬革兰氏阳性菌381株(94 %)、革兰氏阴性菌19株(6 %);猫革兰氏阳性菌355株(97 %)、革兰氏阴性菌11株(3 %)。在狗中,假中间葡萄球菌是最常见的分离革兰氏阳性细菌,鉴定出53株。同时,在猫中以凝固酶阴性葡萄球菌最常见,以猫葡萄球菌为优势种,有50株。两种动物分离的革兰氏阴性菌均以大肠杆菌为主。检出的革兰氏阳性菌129株犬分离株中有105株(81.4 %)耐多药,143株猫分离株中有87株(60.8 %)耐多药。此外,53株假中间链球菌中有42株(79.2% %)和50株猫链球菌中有8株(16.0% %)对青霉素、oxacillin和头孢西丁具有表型抗性,表明存在甲氧西林耐药基因。上述发现强调需要对抗生素耐药性进行更严格的监测,特别是对可能成为耐药细菌宿主的流浪狗和猫。
{"title":"The impact of stray animal populations on public health in Naples, Italy: A preliminary study on antimicrobial resistance on the road","authors":"Francesca Paola Nocera ,&nbsp;Sinem Arslan ,&nbsp;Rossana Schena ,&nbsp;Francesca Pizzano ,&nbsp;Fatima Mourabiti ,&nbsp;Silvia Cappiello ,&nbsp;Cristina Di Palma ,&nbsp;Barbara Lamagna ,&nbsp;Marina Pompameo ,&nbsp;Luisa De Martino","doi":"10.1016/j.cimid.2025.102344","DOIUrl":"10.1016/j.cimid.2025.102344","url":null,"abstract":"<div><div>The rise of antimicrobial resistance poses a significant public health challenge, with an increasing number of organisms developing resistance to many antimicrobial agents used to treat infections in humans and animals. This study investigated the role of stray dogs and cats as sentinel animals in the urban environment. Therefore, the sampling of healthy skin was performed to isolate bacterial species present and assess their antimicrobial resistance profile. A total of 690 swabs were collected, comprising 351 cutaneous swabs from dogs and 339 from cats. A total of 770 strains were identified, including 381 Gram-positive bacteria (94 %) and 19 Gram-negative bacteria (6 %) from dogs, and 355 Gram-positive bacteria (97 %) and 11 Gram-negative bacteria (3 %) from cats. In dogs, <em>Staphylococcus pseudintermedius</em> was the most frequently isolated Gram-positive bacterium, with 53 strains identified. Meanwhile, in cats, coagulase-negative staphylococci were the most common, with <em>Staphylococcus felis</em> being the predominant species, represented by 50 strains. Among the isolated Gram-negative bacteria in both animal species, <em>E. coli</em> was predominant. Among the recovered Gram-positive bacteria, multidrug resistance was observed in 105 out of 129 (81.4 %) canine isolates and 87 out of 143 (60.8 %) feline isolates. Additionally, phenotypic resistance to penicillin, oxacillin, and cefoxitin in 42 out of 53 (79.2 %) <em>S. pseudintermedius</em> strains and 8 out of 50 (16.0 %) <em>S. felis</em> strains was identified, suggesting the presence of the methicillin resistance gene. The above findings underscore the need for stricter monitoring of antibiotic resistance specifically in stray dogs and cats which can act as reservoirs for resistant bacteria.</div></div>","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"120 ","pages":"Article 102344"},"PeriodicalIF":2.0,"publicationDate":"2025-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143892195","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative global epidemiology and species distribution of Sarcocystis spp. in new and old world camelids: A systematic review and meta-analysis 新旧世界骆驼中肌囊菌的全球流行病学和物种分布比较:系统综述和荟萃分析
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-04-26 DOI: 10.1016/j.cimid.2025.102340
Reza Ataee Disfani , Ali Asghari , Ali Pouryousef , Laya Shamsi , Amir Farzam , Mohammad Ghafari-Cherati , Behzad Bijani , Farajolah Maleki
This study aimed to investigate the global prevalence, species diversity, and geographical distribution of Sarcocystis spp. in Old World Camelids (OWCs) and New World Camelids (NWCs). A comprehensive literature search was conducted across multiple databases, covering studies up to December 22, 2024. The analysis included 36 studies (28 on OWCs and 8 on NWCs), comprising data from 5942 camelids (4850 OWCs and 1092 NWCs) across 13 countries in three continents. A random-effects model was used to estimate pooled prevalence rates, and heterogeneity was assessed using the I² statistic. The overall prevalence of Sarcocystis spp. in camelids was 57.7 % (95 % CI: 49.4–65.6 %). NWCs exhibited a significantly higher pooled prevalence (77.6 %, 95 % CI: 55–90.8 %) compared to OWCs (55.1 %, 95 % CI: 46.4–63.6 %). The highest regional pooled prevalence was observed in South America (82.3 %), particularly in the WHO AMR region (82.3 %), with Peru reporting the highest pooled prevalence at 99.3 %. The oesophagus was the most frequently infected tissue. Four valid Sarcocystis species were identified in camelids: S. cameli and S. ippeni in OWCs, and S. aucheniae and S. masoni in NWCs. Many positive samples were classified only as Sarcocystis spp. Although none of these species poses a zoonotic risk, some like S. cameli and S. aucheniae are particularly significant due to their economic and veterinary impact on camelids. Their ability to form macroscopic cysts can negatively affect meat quality, leading to considerable economic losses in the camel industry. Targeted surveillance and control measures are recommended, particularly in high-prevalence regions.
本研究旨在调查旧世界和新世界Camelids (OWCs)中Sarcocystis spp.的全球流行度、物种多样性和地理分布。在多个数据库中进行了全面的文献检索,涵盖了截至2024年12月22日的研究。该分析包括36项研究(28项关于野生骆驼,8项关于非野生骆驼),包括来自三大洲13个国家5942只骆驼(4850只野生骆驼和1092只非野生骆驼)的数据。采用随机效应模型估计合并患病率,采用I²统计量评估异质性。骆驼类中肌囊虫的总患病率为57.7% %(95% % CI: 49.4 - 65.6% %)。NWCs的总患病率(77.6% %,95 % CI: 55-90.8 %)明显高于OWCs(55.1% %,95 % CI: 46.4-63.6 %)。在南美洲观察到最高的区域合并患病率(82.3 %),特别是在世卫组织抗菌素耐药性区域(82.3 %),秘鲁报告的最高合并患病率为99.3% %。食道是最常见的感染组织。在骆驼科中鉴定出4种有效的肉囊菌,分别是在西部地区发现的cameli S.和ippeni S.,在西部地区发现的aucheniae和masoni S.。许多阳性样本仅被归类为肉囊菌属,尽管这些物种都不构成人畜共患风险,但骆驼链球菌和aucheniae等物种由于其对骆驼类的经济和兽医影响而特别重要。它们形成宏观囊肿的能力会对肉品质产生负面影响,导致骆驼产业的巨大经济损失。建议采取有针对性的监测和控制措施,特别是在高流行地区。
{"title":"Comparative global epidemiology and species distribution of Sarcocystis spp. in new and old world camelids: A systematic review and meta-analysis","authors":"Reza Ataee Disfani ,&nbsp;Ali Asghari ,&nbsp;Ali Pouryousef ,&nbsp;Laya Shamsi ,&nbsp;Amir Farzam ,&nbsp;Mohammad Ghafari-Cherati ,&nbsp;Behzad Bijani ,&nbsp;Farajolah Maleki","doi":"10.1016/j.cimid.2025.102340","DOIUrl":"10.1016/j.cimid.2025.102340","url":null,"abstract":"<div><div>This study aimed to investigate the global prevalence, species diversity, and geographical distribution of <em>Sarcocystis</em> spp. in Old World Camelids (OWCs) and New World Camelids (NWCs). A comprehensive literature search was conducted across multiple databases, covering studies up to December 22, 2024. The analysis included 36 studies (28 on OWCs and 8 on NWCs), comprising data from 5942 camelids (4850 OWCs and 1092 NWCs) across 13 countries in three continents. A random-effects model was used to estimate pooled prevalence rates, and heterogeneity was assessed using the I² statistic. The overall prevalence of <em>Sarcocystis</em> spp. in camelids was 57.7 % (95 % CI: 49.4–65.6 %). NWCs exhibited a significantly higher pooled prevalence (77.6 %, 95 % CI: 55–90.8 %) compared to OWCs (55.1 %, 95 % CI: 46.4–63.6 %). The highest regional pooled prevalence was observed in South America (82.3 %), particularly in the WHO AMR region (82.3 %), with Peru reporting the highest pooled prevalence at 99.3 %. The oesophagus was the most frequently infected tissue. Four valid <em>Sarcocystis</em> species were identified in camelids: <em>S. cameli</em> and <em>S. ippeni</em> in OWCs, and <em>S. aucheniae</em> and <em>S. masoni</em> in NWCs. Many positive samples were classified only as <em>Sarcocystis</em> spp. Although none of these species poses a zoonotic risk, some like <em>S. cameli</em> and <em>S. aucheniae</em> are particularly significant due to their economic and veterinary impact on camelids. Their ability to form macroscopic cysts can negatively affect meat quality, leading to considerable economic losses in the camel industry. Targeted surveillance and control measures are recommended, particularly in high-prevalence regions.</div></div>","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"120 ","pages":"Article 102340"},"PeriodicalIF":2.0,"publicationDate":"2025-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143882854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prevalence, risk factors, and phylogeny of Toxascaris leonina in stray dogs and cats in Tashkent region, Uzbekistan, with a note on co-infection with Toxocara canis and Toxocara cati 乌兹别克斯坦塔什干地区流浪狗和猫中狮弓形虫的患病率、危险因素和系统发育,并说明犬和猫弓形虫的共同感染情况
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-04-25 DOI: 10.1016/j.cimid.2025.102343
Alisher Safarov , Djalaliddin Azimov , Nozima Mukhitdinova , Haqqul Abdukholikov , Firuza Akramova , Abdurakhim Kuchboev , Adolat Mirzaeva , Hanène Belkahia , Mourad Ben Said
Toxascaris leonina is a significant parasitic agent, affecting domestic carnivores, with implications for public health. This study investigates the prevalence, risk factors, and phylogenetic relationships of T. leonina in stray dogs and cats in Tashkent, Uzbekistan, while also examining co-infection rates with Toxocara canis and Toxocara cati. A cross-sectional study was conducted in the Tashkent Region of Uzbekistan, focusing on stray dogs and cats. From February 2023 to September 2024, 180 dog and 84 cat necropsies were collected for analysis. Parasitological examinations were performed to identify T. leonina, T. canis, and T. cati. Epidemiological data, including species, sex, age group, and collection location, were recorded. Molecular analysis was conducted on selected T. leonina specimens to assess genetic variations, and a phylogenetic analysis was performed. The study revealed a high prevalence of T. leonina in stray dogs (95 %) and cats (63.1 %), with significantly different co-infection patterns identified: 78.89 % of dogs were co-infected with T. canis, while 28.57 % of cats had co-infections with T. cati. Notably, in dogs, the infection rate of T. leonina among different age groups was statistically significant. Genetic analysis revealed 100 % nucleotide identity among local T. leonina isolates. The phylogenetic analysis indicated four distinct clusters within the T. leonina group, with our isolates exclusively forming a cluster, which is genetically close to an isolate infecting a dog from Australia. The findings highlight the urgent need for monitoring and control strategies for T. leonina and its co-infections in stray carnivores in Tashkent, Uzbekistan. Understanding the genetic diversity and risk factors associated with these infections will aid in developing effective public health interventions and inform future research in the region.
狮子弓形虫是一种影响家养食肉动物的重要寄生虫,对公共卫生具有影响。本研究调查了乌兹别克斯坦塔什干市流浪狗和流浪猫中狮子弓形虫的流行情况、危险因素和系统发育关系,同时调查了犬弓形虫和猫弓形虫的合并感染率。在乌兹别克斯坦塔什干地区进行了一项横断面研究,重点是流浪狗和猫。从2023年2月至2024年9月,收集了180例狗尸体和84例猫尸体进行分析。进行了寄生虫学检查,鉴定了狮子绦虫、犬绦虫和猫绦虫。记录流行病学资料,包括物种、性别、年龄组和采集地点。采用分子分析方法对所选标本进行遗传变异分析,并进行系统发育分析。研究发现,流浪狗和流浪猫的狮子t型绦虫感染率分别为95 %和63.1 %,但两者的共感染模式存在显著差异:78.89 %的狗和28.57 %的猫共感染t型绦虫。值得注意的是,在狗中,不同年龄组的狮子绦虫感染率有统计学意义。遗传分析表明,当地分离株的核苷酸同源性为100% %。系统发育分析表明,在T. leonina组中有四个不同的集群,我们的分离株完全形成一个集群,该集群与感染澳大利亚犬的分离株在遗传上接近。研究结果强调了乌兹别克斯坦塔什干流浪食肉动物中狮子绦虫及其合并感染的监测和控制战略的迫切需要。了解与这些感染相关的遗传多样性和风险因素将有助于制定有效的公共卫生干预措施,并为该区域今后的研究提供信息。
{"title":"Prevalence, risk factors, and phylogeny of Toxascaris leonina in stray dogs and cats in Tashkent region, Uzbekistan, with a note on co-infection with Toxocara canis and Toxocara cati","authors":"Alisher Safarov ,&nbsp;Djalaliddin Azimov ,&nbsp;Nozima Mukhitdinova ,&nbsp;Haqqul Abdukholikov ,&nbsp;Firuza Akramova ,&nbsp;Abdurakhim Kuchboev ,&nbsp;Adolat Mirzaeva ,&nbsp;Hanène Belkahia ,&nbsp;Mourad Ben Said","doi":"10.1016/j.cimid.2025.102343","DOIUrl":"10.1016/j.cimid.2025.102343","url":null,"abstract":"<div><div><em>Toxascaris leonina</em> is a significant parasitic agent, affecting domestic carnivores, with implications for public health. This study investigates the prevalence, risk factors, and phylogenetic relationships of <em>T. leonina</em> in stray dogs and cats in Tashkent, Uzbekistan, while also examining co-infection rates with <em>Toxocara canis</em> and <em>Toxocara cati</em>. A cross-sectional study was conducted in the Tashkent Region of Uzbekistan, focusing on stray dogs and cats. From February 2023 to September 2024, 180 dog and 84 cat necropsies were collected for analysis. Parasitological examinations were performed to identify <em>T. leonina</em>, <em>T. canis</em>, and <em>T. cati</em>. Epidemiological data, including species, sex, age group, and collection location, were recorded. Molecular analysis was conducted on selected <em>T. leonina</em> specimens to assess genetic variations, and a phylogenetic analysis was performed. The study revealed a high prevalence of <em>T. leonina</em> in stray dogs (95 %) and cats (63.1 %), with significantly different co-infection patterns identified: 78.89 % of dogs were co-infected with <em>T. canis</em>, while 28.57 % of cats had co-infections with <em>T. cati</em>. Notably, in dogs, the infection rate of <em>T. leonina</em> among different age groups was statistically significant. Genetic analysis revealed 100 % nucleotide identity among local <em>T. leonina</em> isolates. The phylogenetic analysis indicated four distinct clusters within the <em>T. leonina</em> group, with our isolates exclusively forming a cluster, which is genetically close to an isolate infecting a dog from Australia. The findings highlight the urgent need for monitoring and control strategies for <em>T. leonina</em> and its co-infections in stray carnivores in Tashkent, Uzbekistan. Understanding the genetic diversity and risk factors associated with these infections will aid in developing effective public health interventions and inform future research in the region.</div></div>","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"120 ","pages":"Article 102343"},"PeriodicalIF":2.0,"publicationDate":"2025-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143892196","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Plasmid mediated colistin resistance in ESBL producing Enterobacterales based on both phenotypic and molecular analysis in companion and farm animals from Algeria 基于阿尔及利亚同伴和农场动物的表型和分子分析,质粒介导的产ESBL肠杆菌的粘菌素耐药性
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-04-25 DOI: 10.1016/j.cimid.2025.102342
Manel Merradi , Fatma Zohra Chebaani , Nouzha Heleili , Maria V. Alvanou , Ioannis A. Giantsis
The third-generation cephalosporin (3GC)-resistant Enterobacterales strains have been detected worldwide in humans and animals. Hence, in this study, we evaluated the prevalence and genetic characteristics of 3GC-resistant Enterobacterales in animals and their environment from Algeria, a country that combines traditional farming techniques with current efforts of veterinary development. Rectal samples were collected from 126 healthy livestock, poultry, pets and environment surfaces between 2022 and 2023. Antimicrobial susceptibility testing was performed according to Kirby-Bauer method and genes associated with resistance in 3GC-resistant isolates were identified using polymerase chain reaction (PCR) and DNA sequencing. Biofilm formation was assessed using the red Congo agar and tube methods with molecular study of biofilm genes. We obtained 49 non-duplicated 3GC-resistant Enterobacterales. Different species was isolated and the predominant ones were Escherichia coli 32,65 % (16/49) and Entrobacter cloacae 26,53 % (13/49). ESBL phenotype was detected in 46 strains. ESBL genes were blaTEM, blaOXA, blaCTX-Mg2, blaSHV and blaCTX-Mg1. The combination of blaTEM and blaOXA was present in 25 isolates, blaOXA in 15 isolates, both blaTEM and the combination of blaTEM+blaOXA+blaCTX-Mg1 in 2 isolates, blaTEM+blaOXA+blaCTX-Mg2 and blaOXA+blaSHV+ blaCTX-Mg1 were detected in one isolate. Two colistin resistant strains harbored mcr-1 gene and co-expressing blaTEM+blaOXA ESBL were isolated. Biofilm production was 18,37 % according to Red Congo agar method and 20,41 % in tube method. Biofilm genes csgA and bssb were detected in 20 isolates. Our study findings indicated that blaTEM+blaOXA is predominant in the 3GC resistant strains with the presence of mcr-1.
第三代头孢菌素(3GC)耐药肠杆菌菌株已在世界范围内的人类和动物中检测到。因此,在本研究中,我们评估了阿尔及利亚动物及其环境中3gc耐药肠杆菌的患病率和遗传特征,阿尔及利亚是一个将传统农业技术与当前兽医发展努力相结合的国家。在2022年至2023年期间,从126只健康家畜、家禽、宠物和环境表面收集直肠样本。采用Kirby-Bauer法进行药敏试验,采用聚合酶链反应(PCR)和DNA测序技术鉴定3gc耐药菌株的耐药相关基因。采用红刚果脂法和试管法评价生物膜的形成,并对生物膜基因进行分子研究。我们获得了49个非重复的3gc耐药肠杆菌。分离到的菌种不同,优势菌种为大肠杆菌32,65 %(16/49)和阴沟Entrobacter 263,53 %(13/49)。在46株中检测到ESBL表型。ESBL基因为blaTEM、blaOXA、blaCTX-Mg2、blaSHV和blaCTX-Mg1。25株分离株中存在blaOXA和blaOXA的组合,15株分离株中存在blaOXA, 2株分离株中同时存在blaOXA和blaOXA+blaCTX-Mg1的组合,1株分离株中检测到blaOXA+blaCTX-Mg2和blaOXA+blaSHV+ blaCTX-Mg1。分离到2株携带mcr-1基因、共表达blaTEM+blaOXA ESBL的粘菌素耐药菌株。红刚琼脂法和试管法的生物膜产量分别为18.37 %和20.41 %。在20株分离菌中检测到生物膜基因csgA和bssb。我们的研究结果表明,在存在mcr-1的3GC耐药菌株中,blaTEM+blaOXA占优势。
{"title":"Plasmid mediated colistin resistance in ESBL producing Enterobacterales based on both phenotypic and molecular analysis in companion and farm animals from Algeria","authors":"Manel Merradi ,&nbsp;Fatma Zohra Chebaani ,&nbsp;Nouzha Heleili ,&nbsp;Maria V. Alvanou ,&nbsp;Ioannis A. Giantsis","doi":"10.1016/j.cimid.2025.102342","DOIUrl":"10.1016/j.cimid.2025.102342","url":null,"abstract":"<div><div>The third-generation cephalosporin (3GC)-resistant <em>Enterobacterales</em> strains have been detected worldwide in humans and animals. Hence, in this study, we evaluated the prevalence and genetic characteristics of 3GC-resistant <em>Enterobacterales</em> in animals and their environment from Algeria, a country that combines traditional farming techniques with current efforts of veterinary development. Rectal samples were collected from 126 healthy livestock, poultry, pets and environment surfaces between 2022 and 2023. Antimicrobial susceptibility testing was performed according to Kirby-Bauer method and genes associated with resistance in 3GC-resistant isolates were identified using polymerase chain reaction (PCR) and DNA sequencing. Biofilm formation was assessed using the red Congo agar and tube methods with molecular study of biofilm genes. We obtained 49 non-duplicated 3GC-resistant <em>Enterobacterales</em>. Different species was isolated and the predominant ones were <em>Escherichia coli</em> 32,65 % (16/49) and <em>Entrobacter cloacae</em> 26,53 % (13/49). ESBL phenotype was detected in 46 strains. ESBL genes were <em>bla</em><sub><em>TEM</em></sub>, <em>bla</em><sub><em>OXA</em></sub>, <em>bla</em><sub><em>CTX-Mg2</em></sub>, <em>bla</em><sub><em>SHV</em></sub> and <em>bla</em><sub><em>CTX-Mg1</em></sub><em>.</em> The combination of <em>bla</em><sub><em>TEM</em></sub> and <em>bla</em><sub><em>OXA</em></sub> was present in 25 isolates, <em>bla</em><sub><em>OXA</em></sub> in 15 isolates, both <em>bla</em><sub><em>TEM</em></sub> and the combination of <em>bla</em><sub><em>TEM</em></sub>+<em>bla</em><sub><em>OXA</em></sub>+<em>bla</em><sub><em>CTX-Mg1</em></sub> in 2 isolates, <em>bla</em><sub><em>TEM</em></sub>+<em>bla</em><sub><em>OXA</em></sub>+<em>bla</em><sub><em>CTX-Mg2</em></sub> and <em>bla</em><sub><em>OXA</em></sub>+<em>bla</em><sub><em>SHV</em></sub>+ <em>bla</em><sub><em>CTX-Mg1</em></sub> were detected in one isolate. Two colistin resistant strains harbored <em>mcr-1 gene and</em> co-expressing <em>bla</em><sub><em>TEM</em></sub>+<em>bla</em><sub><em>OXA</em></sub> ESBL were isolated. Biofilm production was 18,37 % according to Red Congo agar method and 20,41 % in tube method<strong>.</strong> Biofilm genes c<em>sgA</em> and <em>bssb</em> were detected in 20 isolates. Our study findings indicated that <em>bla</em><sub><em>TEM</em></sub>+<em>bla</em><sub><em>OXA</em></sub> is predominant in the 3GC resistant strains with the presence of <em>mcr-1</em>.</div></div>","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"120 ","pages":"Article 102342"},"PeriodicalIF":2.0,"publicationDate":"2025-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143882910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular prevalence and genetic diversity of Hepatozoon canis in Rhipicephalus sanguineus s.l. and Hyalomma anatolicum infesting dogs 犬血头绦虫和鸭透明瘤犬肝虫病的分子流行率和遗传多样性
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-04-14 DOI: 10.1016/j.cimid.2025.102338
Hafiza Amna Bilal , Madiha Rasool , Arfa Bibi , Hira Muqaddas , Iqra Majeed , Muhammad Farooq , Kasim Sakran Abass , Samir Ibenmoussa , Turki M. Dawoud , Shakir Ullah , Adil Khan , Furhan Iqbal
Hepatozoon canis is an apicomplexan protozoan parasite that is transmitted to canids and by hard ticks belonging to Rhipicephalus and Amblyomma genera. Dogs are more exposed to the vectors and vector borne diseases due to their outdoor activities and closer proximity to the environment they are more exposed to the environment. The present study was aimed to report the molecular prevalence of Hepatozoon canis in the DNA of Rhipicephalus sanguineus s.l. (n = 88) and Hyalomma anatolicum (n = 16) that were infesting dogs in two provinces of Pakistan. Genetic diversity of the parasite and risk factors associated with the infection were also determined. A total of 104 ticks were collected from six districts: Dera Ghazi Khan (47 %), Upper Dir (n = 10), Swat (n = 10), Buner (n = 13), Peshawar (n = 13) and Kohat (n = 11). Overall, PCR amplified a 460–520 base pair amplicon from the 18S rRNA gene of Hepatozoon canis in 18 out of 104 (17 %) screened ticks. Specifically, 19 % of Hyalomma anatolicum and 17 % of Rhipicephalus sanguineus s.l. were infected. Subsequent Sanger sequencing followed by the BLAST analysis confirmed the presence of the parasite. Partial 18S rRNA gene based phylogenetic analysis revealed that sequences generated in this study were genetically diverse and they were clustered with the 18S rRNA gene sequences reported from various animals in Hungry, Iran, Venezuela, Romania, Spain, Italy India, Israel, Taiwan and Czech Republic. Prevalence of Hepatozoon canis was not limited to a particular tick species or their sex, feeding or developmental stages. Parasite prevalence also varied non significantly between the breed of the host dogs. In conclusion, we are reporting the presence of Hepatozoon canis in Rhipicephalus sanguineus s.l. and Hyalomma anatolicum infesting dogs in two provinces of Pakistan confirming the endemic nature of this parasitic infection. This study will add to the existing information regarding Hepatozoon canis prevalence in hard ticks from Pakistan and will assist in planning and implementation of canine vector borne disease control in Pakistan.
犬肝虫是一种顶端复合体原生动物寄生虫,可通过属鼻头虫属和无肢虫属的硬蜱传播给犬科动物。由于户外活动和与环境的接近,狗更容易接触到病媒和病媒传播的疾病。本研究旨在报道巴基斯坦两省感染犬只的猪肝虫( = 88)和猪透明瘤( = 16)DNA中犬肝虫的分子流行情况。还确定了寄生虫的遗传多样性和与感染相关的危险因素。收集104蜱虫从六个地区:德拉拉什德汗(47 %),上层Dir (n = 10),斯瓦特(n = 10),布内尔(n = 13),白沙瓦(n = 13)和科哈特(n = 11)。总的来说,PCR扩增出来自肝虫犬18S rRNA基因的460-520碱基对扩增子,在筛选的104只蜱中有18只(17% %)扩增出。其中,猪眼透明瘤感染19. %,血根头绦虫感染17. %。随后的Sanger测序和BLAST分析证实了寄生虫的存在。犬肝虫病的流行并不局限于特定蜱种或其性别、喂养或发育阶段。寄主犬品种之间的寄生虫流行率也无显著差异。总之,我们报告在巴基斯坦两个省的狗身上发现了血鼻头虫和安纳托利克透明瘤,证实了这种寄生虫感染的地方性。本研究将补充有关巴基斯坦硬蜱中犬肝虫病流行情况的现有信息,并将有助于巴基斯坦犬媒介传播疾病控制的规划和实施。
{"title":"Molecular prevalence and genetic diversity of Hepatozoon canis in Rhipicephalus sanguineus s.l. and Hyalomma anatolicum infesting dogs","authors":"Hafiza Amna Bilal ,&nbsp;Madiha Rasool ,&nbsp;Arfa Bibi ,&nbsp;Hira Muqaddas ,&nbsp;Iqra Majeed ,&nbsp;Muhammad Farooq ,&nbsp;Kasim Sakran Abass ,&nbsp;Samir Ibenmoussa ,&nbsp;Turki M. Dawoud ,&nbsp;Shakir Ullah ,&nbsp;Adil Khan ,&nbsp;Furhan Iqbal","doi":"10.1016/j.cimid.2025.102338","DOIUrl":"10.1016/j.cimid.2025.102338","url":null,"abstract":"<div><div><em>Hepatozoon canis</em> is an apicomplexan protozoan parasite that is transmitted to canids and by hard ticks belonging to <em>Rhipicephalus</em> and <em>Amblyomma</em> genera. Dogs are more exposed to the vectors and vector borne diseases due to their outdoor activities and closer proximity to the environment they are more exposed to the environment. The present study was aimed to report the molecular prevalence of <em>Hepatozoon canis</em> in the DNA of <em>Rhipicephalus sanguineus s.l.</em> (n = 88) and <em>Hyalomma anatolicum</em> (n = 16) that were infesting dogs in two provinces of Pakistan. Genetic diversity of the parasite and risk factors associated with the infection were also determined. A total of 104 ticks were collected from six districts: Dera Ghazi Khan (47 %), Upper Dir (n = 10), Swat (n = 10), Buner (n = 13), Peshawar (n = 13) and Kohat (n = 11). Overall, PCR amplified a 460–520 base pair amplicon from the 18S rRNA gene of <em>Hepatozoon canis</em> in 18 out of 104 (17 %) screened ticks. Specifically, 19 % of <em>Hyalomma anatolicum</em> and 17 % of <em>Rhipicephalus sanguineus s.l.</em> were infected. Subsequent Sanger sequencing followed by the BLAST analysis confirmed the presence of the parasite<em>.</em> Partial 18S rRNA gene based phylogenetic analysis revealed that sequences generated in this study were genetically diverse and they were clustered with the 18S rRNA gene sequences reported from various animals in Hungry, Iran, Venezuela, Romania, Spain, Italy India, Israel, Taiwan and Czech Republic. Prevalence of <em>Hepatozoon canis</em> was not limited to a particular tick species or their sex, feeding or developmental stages. Parasite prevalence also varied non significantly between the breed of the host dogs. In conclusion, we are reporting the presence of <em>Hepatozoon canis</em> in <em>Rhipicephalus sanguineus s.l.</em> and <em>Hyalomma anatolicum</em> infesting dogs in two provinces of Pakistan confirming the endemic nature of this parasitic infection. This study will add to the existing information regarding <em>Hepatozoon canis</em> prevalence in hard ticks from Pakistan and will assist in planning and implementation of canine vector borne disease control in Pakistan.</div></div>","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"119 ","pages":"Article 102338"},"PeriodicalIF":2.0,"publicationDate":"2025-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143844097","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
DNA damage induced by parasitic infections in humans and animals 由人类和动物的寄生虫感染引起的DNA损伤
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-04-08 DOI: 10.1016/j.cimid.2025.102337
Milan Rajković , Gunita Deksne , Lada Živković , Elina Leonova , Biljana Spremo-Potparević , Nikolajs Sjakste
Pathologies caused by parasitic infections, including protozoans and helminths remain a burden for healthcare in many countries. The DNA damage is produced by numerous parasites, both protozoans and helminths. However, the exact number of cancer-causing parasites and their role in neoplasma formation is still undetermined. The progression and dynamics of parasitic infections are significantly influenced by endogenously induced increase in oxidative stress (OS). Increased ROS production undermines antioxidant defense mechanisms by disrupting the balance between prooxidants and antioxidants, causing structural damage to important biomolecules, including host DNA. The generation of DNA damage possibly leads to the progression of carcinogenesis. However, direct DNA damage by parasites, eggs and factors released by parasites is also possible, and it leads to genomic instability that is a hallmark of most human and animal cancers. Understanding the way parasites induce DNA damage in the hosts may be helpful in the control of parasitic infections and the prevention of parasite-induced malignancies, ultimately benefiting the health of humans and animals. This review article offers an updated overview of parasitic infection-induced DNA damage mechanisms.
在许多国家,包括原生动物和蠕虫在内的寄生虫感染引起的病理仍然是卫生保健的负担。DNA损伤是由许多寄生虫造成的,包括原生动物和蠕虫。然而,致癌寄生虫的确切数量及其在肿瘤形成中的作用仍不确定。寄生虫感染的进展和动态受到内源性氧化应激(OS)增加的显著影响。ROS的增加破坏了促氧化剂和抗氧化剂之间的平衡,从而破坏了抗氧化防御机制,导致包括宿主DNA在内的重要生物分子的结构损伤。DNA损伤的产生可能导致癌变的进展。然而,寄生虫、虫卵和寄生虫释放的因子也可能直接损伤DNA,并导致基因组不稳定,这是大多数人类和动物癌症的一个标志。了解寄生虫诱导宿主DNA损伤的方式可能有助于控制寄生虫感染和预防寄生虫诱导的恶性肿瘤,最终有益于人类和动物的健康。本文综述了寄生虫感染诱导的DNA损伤机制的最新进展。
{"title":"DNA damage induced by parasitic infections in humans and animals","authors":"Milan Rajković ,&nbsp;Gunita Deksne ,&nbsp;Lada Živković ,&nbsp;Elina Leonova ,&nbsp;Biljana Spremo-Potparević ,&nbsp;Nikolajs Sjakste","doi":"10.1016/j.cimid.2025.102337","DOIUrl":"10.1016/j.cimid.2025.102337","url":null,"abstract":"<div><div>Pathologies caused by parasitic infections, including protozoans and helminths remain a burden for healthcare in many countries. The DNA damage is produced by numerous parasites, both protozoans and helminths. However, the exact number of cancer-causing parasites and their role in neoplasma formation is still undetermined. The progression and dynamics of parasitic infections are significantly influenced by endogenously induced increase in oxidative stress (OS). Increased ROS production undermines antioxidant defense mechanisms by disrupting the balance between prooxidants and antioxidants, causing structural damage to important biomolecules, including host DNA. The generation of DNA damage possibly leads to the progression of carcinogenesis. However, direct DNA damage by parasites, eggs and factors released by parasites is also possible, and it leads to genomic instability that is a hallmark of most human and animal cancers. Understanding the way parasites induce DNA damage in the hosts may be helpful in the control of parasitic infections and the prevention of parasite-induced malignancies, ultimately benefiting the health of humans and animals. This review article offers an updated overview of parasitic infection-induced DNA damage mechanisms.</div></div>","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"119 ","pages":"Article 102337"},"PeriodicalIF":2.0,"publicationDate":"2025-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143824691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative efficacy of recombinant VP6 protein based in-house Latex Agglutination test with other diagnostic assays for detection of Rotavirus A from calves, piglets and children 基于重组VP6蛋白的内部乳胶凝集试验与其他诊断方法检测犊牛、仔猪和儿童甲型轮状病毒的效果比较
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-04-02 DOI: 10.1016/j.cimid.2025.102336
Bilal Ahmad Malla , Zunjar Baburao Dubal , Ajay Kumar , Obli Rajendran Vinodh Kumar , Aquil Mohmad , Pashupathi Mani , Kaushal Kishor Rajak , Kiran Narayan Bhilegaonkar
In this study, VP6 protein of rotavirus A (RVA) was expressed in the prokaryotic system for the development of indigenous Latex Agglutination Test for diagnosis of RVA gastroenteritis in animals. Polyclonal anti-rVP6 IgG were raised in rabbits; purified and conjugated to carboxylated beads via covalent coupling for development of in-house LAT. Clinical utility of in-house developed LAT was evaluated on 313 stool samples collected from calves, children and piglets of Bareilly, Uttar Pradesh, India. In-house LAT yielded consistent results at weekly intervals for 2 months. Best visual perception of agglutination was observed when 5 μL beads coupled with 200 μg anti-rVP6 IgG and 10 μL of antigen reacted within reaction time of 2 minutes. Relative sensitivity and specificity of in-house LAT w.r.t RT-PCR was 65.45 % and 95.73 %, respectively; w.r.t commercial LFA was 75.55 % and 95.14 %, respectively and w.r.t RNA-PAGE was 70.27 % and 92.39 %, respectively. The kappa agreement between LAT and RT-PCR was 0.65 (substantial); between LAT and LFA was 0.7 (substantial) and between LAT and RNA-PAGE was 0.56 (moderate). Overall RVA stool positivity from children, calves and piglets with 4 assays was found to be 40 % (40/100), 9 % (9/100) and 16.81 % (19/113), respectively. Higher positivity was recorded in male (45.90 %, 28/61) than in female (30.76 %, 12/39) children. Developed LAT has fulfilled the WHO criteria for point-of-care testing with satisfactory efficacy for detection of RVA. This may serve as a preliminary assay for epidemiological surveillance of RVA antigen in determining rotavirus outbreaks in animal herds under resource-poor settings.
本研究在原核系统中表达了轮状病毒A (RVA)的VP6蛋白,建立了用于诊断动物RVA胃肠炎的本土乳胶凝集试验。兔多克隆抗rvp6 IgG;通过共价偶联纯化和共轭到羧基化珠,用于开发内部LAT。对印度北方邦Bareilly地区的313例小牛、儿童和仔猪粪便样本进行了临床应用评估。内部LAT每隔2个月产生一致的结果。当5 μL微球与200 μg抗rvp6 IgG和10 μL抗原在2 min内反应时,凝集效果最佳。内部LAT w.r.t RT-PCR的相对灵敏度和特异性分别为65.45 %和95.73 %;w.r.t商业LFA分别为75.55 %和95.14 %,w.r.t RNA-PAGE分别为70.27 %和92.39 %。LAT与RT-PCR的kappa一致性为0.65(实质性);LAT与LFA之间的差异为0.7(大量),LAT与RNA-PAGE之间的差异为0.56(中等)。4项检测结果显示,儿童、犊牛和仔猪粪便RVA总体阳性率分别为40 %(40/100)、9 %(9/100)和16.81 %(19/113)。男性患儿(45.90 %,28/61)阳性率高于女性患儿(30.76 %,12/39)。开发的LAT已达到世卫组织的即时检测标准,在检测RVA方面具有令人满意的效果。这可以作为RVA抗原流行病学监测的初步测定方法,以确定资源贫乏环境下畜群中轮状病毒的暴发。
{"title":"Comparative efficacy of recombinant VP6 protein based in-house Latex Agglutination test with other diagnostic assays for detection of Rotavirus A from calves, piglets and children","authors":"Bilal Ahmad Malla ,&nbsp;Zunjar Baburao Dubal ,&nbsp;Ajay Kumar ,&nbsp;Obli Rajendran Vinodh Kumar ,&nbsp;Aquil Mohmad ,&nbsp;Pashupathi Mani ,&nbsp;Kaushal Kishor Rajak ,&nbsp;Kiran Narayan Bhilegaonkar","doi":"10.1016/j.cimid.2025.102336","DOIUrl":"10.1016/j.cimid.2025.102336","url":null,"abstract":"<div><div>In this study, VP6 protein of rotavirus A (RVA) was expressed in the prokaryotic system for the development of indigenous Latex Agglutination Test for diagnosis of RVA gastroenteritis in animals. Polyclonal anti-rVP6 IgG were raised in rabbits; purified and conjugated to carboxylated beads via covalent coupling for development of in-house LAT. Clinical utility of in-house developed LAT was evaluated on 313 stool samples collected from calves, children and piglets of Bareilly, Uttar Pradesh, India. In-house LAT yielded consistent results at weekly intervals for 2 months. Best visual perception of agglutination was observed when 5 μL beads coupled with 200 μg anti-rVP6 IgG and 10 μL of antigen reacted within reaction time of 2 minutes. Relative sensitivity and specificity of in-house LAT w.r.t RT-PCR was 65.45 % and 95.73 %, respectively; w.r.t commercial LFA was 75.55 % and 95.14 %, respectively and w.r.t RNA-PAGE was 70.27 % and 92.39 %, respectively. The kappa agreement between LAT and RT-PCR was 0.65 (substantial); between LAT and LFA was 0.7 (substantial) and between LAT and RNA-PAGE was 0.56 (moderate). Overall RVA stool positivity from children, calves and piglets with 4 assays was found to be 40 % (40/100), 9 % (9/100) and 16.81 % (19/113), respectively. Higher positivity was recorded in male (45.90 %, 28/61) than in female (30.76 %, 12/39) children. Developed LAT has fulfilled the WHO criteria for point-of-care testing with satisfactory efficacy for detection of RVA. This may serve as a preliminary assay for epidemiological surveillance of RVA antigen in determining rotavirus outbreaks in animal herds under resource-poor settings.</div></div>","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"119 ","pages":"Article 102336"},"PeriodicalIF":2.0,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143785640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Investigation of the epidemiology of calicivirus infection of cats using molecular and virus isolation techniques 应用分子分离和病毒分离技术研究猫杯状病毒感染的流行病学
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-03-10 DOI: 10.1016/j.cimid.2025.102335
Gulizar Acar , Seval Bi̇lge-Dagalp
Feline calicivirus (FCV) an important and widely detected upper respiratory system agent in cats. Being genetically diverse, FCV can cause different symptoms, such as pneumonia, oral lesions, conjunctivitis, arthritis, and, recently, virulent systemic disease. The present study first determined the presence/prevalence of FCV infection in sampled vaccinated/unvaccinated cats with suspected FCV and/or clinically healthy. Second, it compared PCR and virus isolation (VI) in detecting FCV in these cats. It also aimed to diagnose FCV, and evaluate the advantages/disadvantages of the region and primers used for PCR. Third, it genetically characterized the FCV strains, targeting the VP1 (A-B and E) gene region. A total of 331 diagnostic materials (conjunctival, nasal, oropharyngeal swab samples, and EDTA-containing blood samples) were obtained from 107 cats and checked using PCR and VI. Including both tests, the overall FCV positivity rate was 43.93 % (47/107). The FCV positivity rate was 35.99 % (21/59)/53.33 % (24/45) in vaccinated/unvaccinated and 58.06 % (18/31)/38.16 % (29/76) in clinically infected/clinically healthy cats, respectively. As a result of direct nested RT-PCR, FCV positivity was detected in 23.08 % of oropharyngeal swabs, 15.24 % of nasal swabs and 14.02 % of conjunctival swabs based on diagnostic material. FCV was also detected in 19.63 % (21/107) of the cats after virus isolation. Those samples that were FCV positive for VP1 A-B and VP1 E were subjected to sequence and phylogenetic analysis. Regarding many of the detected viruses were similar to the viruses in Genogroup I, while two viruses (ANK111OSW and ANK113OSW) were phylogenetically similar to both Genogroup I and Genogroup II at the same rate (74.30 %). The findings indicate a, higher overall FCV detection rate than in previous studies in Türkiye. Molecular diagnostic methods are not always sufficient for diagnosing infection due to FCV’s genetic diversity from mutation and, recombination. Hence, including VI techniques in FCV evaluation will help prevent false negative results. Furthermore, testing oropharyngeal, nasal and conjunctival swabs together for FCV is believed to provide more accurate results.
猫杯状病毒(FCV)是一种在猫体内广泛检测到的重要上呼吸道病毒。由于遗传多样性,FCV可引起不同的症状,如肺炎、口腔病变、结膜炎、关节炎,以及最近出现的致命性全身性疾病。本研究首先确定了接种疫苗/未接种疫苗的疑似FCV和/或临床健康的猫样本中FCV感染的存在/流行。其次,比较PCR和病毒分离(VI)检测FCV的效果。本研究还旨在诊断FCV,并评估用于PCR的区域和引物的优缺点。第三,以VP1 (A-B和E)基因区域为靶点,对FCV菌株进行遗传表征。从107只猫共获得331份诊断材料(结膜、鼻腔、口咽拭子样本和含edta的血液样本),并采用PCR和VI检测。包括两项检测在内,FCV总阳性率为43.93 %(47/107)。临床感染猫/临床健康猫的FCV阳性率分别为35.99 %(21/59)/53.33 %(24/45)和58.06 %(18/31)/38.16 %(29/76)。直接巢式RT-PCR检测结果显示,23.08 %的口咽拭子、15.24 %的鼻拭子和14.02 %的结膜拭子检出FCV阳性。分离病毒后,19.63 %(21/107)的猫检出FCV。对VP1 A-B和VP1 E阳性的FCV样本进行序列分析和系统发育分析。许多检测到的病毒与基因组I的病毒相似,而两个病毒(ANK111OSW和ANK113OSW)与基因组I和基因组II的系统发育相似率相同(74.30 %)。研究结果表明,与以前的研究相比, rkiye的FCV检出率更高。由于FCV突变和重组的遗传多样性,分子诊断方法并不总是足以诊断感染。因此,在FCV评估中纳入VI技术将有助于防止假阴性结果。此外,同时检测口咽、鼻腔和结膜拭子检测FCV被认为可以提供更准确的结果。
{"title":"Investigation of the epidemiology of calicivirus infection of cats using molecular and virus isolation techniques","authors":"Gulizar Acar ,&nbsp;Seval Bi̇lge-Dagalp","doi":"10.1016/j.cimid.2025.102335","DOIUrl":"10.1016/j.cimid.2025.102335","url":null,"abstract":"<div><div>Feline calicivirus (FCV) an important and widely detected upper respiratory system agent in cats. Being genetically diverse, FCV can cause different symptoms, such as pneumonia, oral lesions, conjunctivitis, arthritis, and, recently, virulent systemic disease. The present study first determined the presence/prevalence of FCV infection in sampled vaccinated/unvaccinated cats with suspected FCV and/or clinically healthy. Second, it compared PCR and virus isolation (VI) in detecting FCV in these cats. It also aimed to diagnose FCV, and evaluate the advantages/disadvantages of the region and primers used for PCR. Third, it genetically characterized the FCV strains, targeting the VP1 (A-B and E) gene region. A total of 331 diagnostic materials (conjunctival, nasal, oropharyngeal swab samples, and EDTA-containing blood samples) were obtained from 107 cats and checked using PCR and VI. Including both tests, the overall FCV positivity rate was 43.93 % (47/107). The FCV positivity rate was 35.99 % (21/59)/53.33 % (24/45) in vaccinated/unvaccinated and 58.06 % (18/31)/38.16 % (29/76) in clinically infected/clinically healthy cats, respectively. As a result of direct nested RT-PCR, FCV positivity was detected in 23.08 % of oropharyngeal swabs, 15.24 % of nasal swabs and 14.02 % of conjunctival swabs based on diagnostic material. FCV was also detected in 19.63 % (21/107) of the cats after virus isolation. Those samples that were FCV positive for VP1 A-B and VP1 E were subjected to sequence and phylogenetic analysis. Regarding many of the detected viruses were similar to the viruses in Genogroup I, while two viruses (ANK111OSW and ANK113OSW) were phylogenetically similar to both Genogroup I and Genogroup II at the same rate (74.30 %). The findings indicate a, higher overall FCV detection rate than in previous studies in Türkiye. Molecular diagnostic methods are not always sufficient for diagnosing infection due to FCV’s genetic diversity from mutation and, recombination. Hence, including VI techniques in FCV evaluation will help prevent false negative results. Furthermore, testing oropharyngeal, nasal and conjunctival swabs together for FCV is believed to provide more accurate results.</div></div>","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"119 ","pages":"Article 102335"},"PeriodicalIF":2.0,"publicationDate":"2025-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143609610","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Staphylococcus spp. and methicillin-resistance gene mecA dispersion in seawater: A case study of Guanabara Bay's recreational and touristic waters 葡萄球菌和耐甲氧西林基因在海水中的扩散:瓜纳巴拉湾休闲和旅游水域的个案研究
IF 2 3区 农林科学 Q4 IMMUNOLOGY Pub Date : 2025-02-12 DOI: 10.1016/j.cimid.2025.102326
Lucas Cecílio Vilar , Antônio Carlos Silva Rego , Marco Antônio Lemos Miguel , Rodolfo Pinheiro da Rocha Paranhos , Marinella Silva Laport , Ciro César Rossi , Marcia Giambiagi-deMarval
Environmental Staphylococci, particularly coagulase-negative Staphylococci (CoNS), are known reservoirs of antimicrobial resistance genes and human-animal opportunistic pathogens, yet their role within the One Health framework remains underexplored. In this study, we isolated 12 species of CoNS from two sites 10 km apart in Guanabara Bay, Rio de Janeiro, with the most frequent species being the opportunistic Staphylococcus saprophyticus (30.3 %), Staphylococcus warneri (25.7 %), and Staphylococcus epidermidis (16.7 %). GTG5-PCR fingerprinting revealed significant genetic diversity, yet identical profiles persisted across both sites throughout the year, indicating strain dispersion and persistence. Among the 66 strains analyzed, 42 exhibited resistance to clinically significant antimicrobials, including methicillin-resistant strains harboring the mecA gene. Remarkably, 22.7 % of the strains carried CRISPR-Cas systems, a frequency unusually high for Staphylococcus spp., suggesting that bacteriophage pressure in the seawater environment may drive this increase. The presence of antimicrobial-resistant CoNS in Guanabara Bay, a popular recreational area, represents a potential public health risk.
环境葡萄球菌,特别是凝固酶阴性葡萄球菌(con),是已知的抗菌素耐药基因和人-动物机会性病原体的储存库,但它们在“同一个健康”框架中的作用仍未得到充分探讨。本研究从巴西巴西瓜纳巴拉湾两个相距10 km的地点分离到12种金黄色葡萄球菌,其中最常见的是机会性腐生葡萄球菌(30.3% %)、warneri葡萄球菌(25.7% %)和表皮葡萄球菌(16.7% %)。GTG5-PCR指纹图谱显示了显著的遗传多样性,但相同的谱在两个地点全年都存在,表明菌株分散和持久性。在分析的66株菌株中,42株表现出对临床重要抗菌素的耐药性,包括含有mecA基因的耐甲氧西林菌株。值得注意的是,22.7% %的菌株携带CRISPR-Cas系统,这一频率对于葡萄球菌来说异常高,这表明海水环境中的噬菌体压力可能推动了这种增加。瓜纳巴拉湾是一个受欢迎的休闲区,在那里存在抗微生物的con,构成了潜在的公共健康风险。
{"title":"Staphylococcus spp. and methicillin-resistance gene mecA dispersion in seawater: A case study of Guanabara Bay's recreational and touristic waters","authors":"Lucas Cecílio Vilar ,&nbsp;Antônio Carlos Silva Rego ,&nbsp;Marco Antônio Lemos Miguel ,&nbsp;Rodolfo Pinheiro da Rocha Paranhos ,&nbsp;Marinella Silva Laport ,&nbsp;Ciro César Rossi ,&nbsp;Marcia Giambiagi-deMarval","doi":"10.1016/j.cimid.2025.102326","DOIUrl":"10.1016/j.cimid.2025.102326","url":null,"abstract":"<div><div>Environmental <em>Staphylococci</em>, particularly coagulase-negative <em>Staphylococci</em> (CoNS), are known reservoirs of antimicrobial resistance genes and human-animal opportunistic pathogens, yet their role within the One Health framework remains underexplored. In this study, we isolated 12 species of CoNS from two sites 10 km apart in Guanabara Bay, Rio de Janeiro, with the most frequent species being the opportunistic <em>Staphylococcus saprophyticus</em> (30.3 %), <em>Staphylococcus warneri</em> (25.7 %), and <em>Staphylococcus epidermidis</em> (16.7 %). GTG<sub>5</sub>-PCR fingerprinting revealed significant genetic diversity, yet identical profiles persisted across both sites throughout the year, indicating strain dispersion and persistence. Among the 66 strains analyzed, 42 exhibited resistance to clinically significant antimicrobials, including methicillin-resistant strains harboring the <em>mecA</em> gene. Remarkably, 22.7 % of the strains carried CRISPR-Cas systems, a frequency unusually high for <em>Staphylococcus</em> spp., suggesting that bacteriophage pressure in the seawater environment may drive this increase. The presence of antimicrobial-resistant CoNS in Guanabara Bay, a popular recreational area, represents a potential public health risk.</div></div>","PeriodicalId":50999,"journal":{"name":"Comparative Immunology Microbiology and Infectious Diseases","volume":"118 ","pages":"Article 102326"},"PeriodicalIF":2.0,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143418996","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Comparative Immunology Microbiology and Infectious Diseases
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1