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Dispersal and connectivity modelling simulations for invertebrate larvae passing through the Strait of Gibraltar 穿越直布罗陀海峡的无脊椎动物幼虫的散布和连接模型模拟
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-07-26 DOI: 10.1093/icesjms/fsae098
Rita F T Pires, Álvaro Peliz, Antonina dos Santos
The link between the northeastern Atlantic and Mediterranean Sea created by the Strait of Gibraltar and the adjacent Iberian and Moroccan coasts marks remarkable transition areas between distinct environments that harbour a diverse mixture of species. The area is interesting regarding marine connectivity and the transport of pelagic invertebrate larvae, crucial knowledge to manage over-exploited populations, and minimize the impacts of climate change and anthropogenic activities. Biophysical models were developed, combining oceanic and particle-tracking Lagrangian simulations with in situ zooplankton distribution data. The conditions driving the larval exchange between the sub-basins and the connectivity throughout the region were explored, using crustacean decapod larvae as biological references. The potential exchange between both sub-basins was confirmed, although specific larval traits revealed contrasting scenarios. The simulations showed that slope-dwelling and mesopelagic larvae have advantage when crossing from the Alboran into the Atlantic, in comparison with shelf-dwelling and epipelagic larvae. Transport pathways and retention areas were identified, and passive drifts were shown to increase the dispersal range of the simulations. The spatial origin of the larval release, larval duration, vertical distribution, and the interaction of larvae with the oceanic features are presented as the main factors impacting the effective larval input into the Atlantic or Mediterranean basins.
直布罗陀海峡和毗邻的伊比利亚和摩洛哥海岸将大西洋东北部和地中海连接起来,这标志着不同环境之间的显著过渡区域,孕育着多种多样的物种。该地区在海洋连通性和浮游无脊椎动物幼虫的运输方面具有重要意义,是管理过度开发的种群以及最大限度地减少气候变化和人为活动影响的关键知识。我们开发了生物物理模型,将海洋和粒子跟踪拉格朗日模拟与现场浮游动物分布数据相结合。以甲壳类十足目幼虫为生物参照物,探讨了亚流域之间幼虫交换的驱动条件以及整个区域的连通性。尽管幼虫的具体特征显示出截然不同的情况,但两个子流域之间的潜在交流得到了证实。模拟结果表明,斜坡栖息和中层幼体与陆架栖息和上层幼体相比,在从阿尔博兰河进入大西洋时更具优势。确定了运输途径和滞留区,并证明被动漂移增加了模拟的扩散范围。幼虫释放的空间来源、幼虫持续时间、垂直分布以及幼虫与海洋特征的相互作用是影响幼虫有效进入大西洋或地中海盆地的主要因素。
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引用次数: 0
Small pelagic fish in the shallow Wadden Sea show opportunistic feeding with a strong benthic link 瓦登海浅海中的小型中上层鱼类表现出机会性觅食,与底栖生物联系紧密
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-07-26 DOI: 10.1093/icesjms/fsae096
Margot A M Maathuis, Ingrid Tulp, Sophie Valk, Xantia van den Brink, Abraham S Couperus, Marinus C Keur, Reindert Nijland, Serdar Sakinan, Valerie van der Vorst, Jan Jaap Poos
Small pelagic fish (SPF) are crucial in marine food webs, transferring energy from plankton to higher trophic levels. This study focuses on herring (Clupea harengus) and sprat (Sprattus sprattus), addressing knowledge gaps in their feeding ecology in a nursery area, the Dutch Wadden Sea. We conducted a year-long, monthly survey, and used DNA metabarcoding to analyse zooplankton samples and stomach contents of two size classes of herring and sprat. Intra-, interspecific, and seasonal variations in fish condition, stomach fullness, and diet composition, along with selective feeding, were studied. Our study showed that condition and diet composition of herring and sprat, along with zooplankton density, exhibited a clear seasonal pattern. Juvenile herring and sprat displayed opportunistic feeding behaviour, rather than showing distinct prey selection. Besides copepods, we regularly observed (larvae of) benthic invertebrates in their diet. This emphasizes the crucial role of SPF as energy transfer agents, not solely between trophic levels, but also from benthic to pelagic habitats. Furthermore, fish post-larvae were part of the diet of larger herring (10–15 cm). Because of its unprecedented temporal and taxonomical detail, this study advances the understanding of seasonal dynamics of dominant components at the base of the Wadden Sea food web.
小型中上层鱼类(SPF)在海洋食物网中至关重要,它们将浮游生物的能量转移到更高的营养级。本研究的重点是鲱鱼(Clupea harengus)和鲱鱼(Sprattus sprattus),以解决它们在荷兰瓦登海育苗区的摄食生态学方面的知识空白。我们进行了为期一年的月度调查,并使用 DNA 代谢编码分析了浮游动物样本和两种大小的鲱鱼和鲱鱼胃内容物。我们研究了鱼体内、鱼种间和季节性鱼体状态、胃的饱满度、食物组成以及选择性摄食的变化。我们的研究表明,鲱鱼和鲱鱼的体况和食物组成以及浮游动物密度呈现出明显的季节性规律。幼年鲱鱼和鲱鱼表现出机会性摄食行为,而不是明显的猎物选择。除了桡足类,我们还经常观察到底栖无脊椎动物的(幼虫)。这强调了 SPF 作为能量转移媒介的重要作用,不仅在营养级之间,而且从底栖到浮游栖息地也是如此。此外,鱼类后代也是较大鲱鱼(10-15 厘米)的食物之一。这项研究具有前所未有的时间和分类细节,有助于人们了解瓦登海食物网底部主要成分的季节动态。
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引用次数: 0
Predicted ecological consequences of wave energy extraction and climate-related changes in wave exposure on rocky shore communities 波浪能提取和与气候有关的波浪暴露变化对岩岸群落生态后果的预测
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-07-23 DOI: 10.1093/icesjms/fsae086
Andrew Want, Simon Waldman, Michael T Burrows, Jonathan C Side, Vengatesan Venugopal, Michael C Bell
Wave energy has the potential to contribute in the transition to decarbonized electricity generation. Extracting wave energy might be expected to have ecological impacts on rocky shore intertidal communities where exposure is one of the most important factors determining species structure and composition. With global climatic change, coastal exposure is predicted to increase with greater significant wave height. The wave-exposed west coast of Orkney, Scotland, UK, is the site of pre-commercial wave device testing. Surveys of 39 rocky shore sites along this coast identified key species and abundances, and quantified exposure-modifying topographic variables. A spectral wave model was constructed to compare baseline, wave extraction, climate change, and combined scenarios. Generalized additive modelling was used to describe the relationship between species, topography, and exposure. Results show that individual species differentially respond to exposure changes with ‘winners’ and ‘losers’ at site level. Overall, community responses are expected to be far greater following predicted climatic change than to industrial-scale wave energy extraction, depending on spatial scale. In combination, energy extraction may reduce the effects of climate-change-related increases in wave exposure of rocky shores. Predicting how location-specific biotic assemblages respond to changes in wave energy as a result of long-term forcing agents provides a valuable marine resource management tool.
波浪能有可能有助于向去碳化发电过渡。提取波浪能可能会对岩石海岸潮间带群落的生态产生影响,因为潮间带群落的暴露是决定物种结构和组成的最重要因素之一。据预测,随着全球气候变化,海岸暴露将随着显著波高的增加而增加。英国苏格兰奥克尼西海岸的波浪暴露是商业化前波浪装置测试的地点。对沿岸 39 个岩石海岸点的调查确定了主要物种和丰度,并量化了影响地形的暴露变量。建立了一个波谱模型,以比较基线、波浪提取、气候变化和综合情景。使用广义加法模型来描述物种、地形和暴露之间的关系。结果表明,单个物种对暴露变化的反应不同,在地点层面有 "赢家 "和 "输家 "之分。总体而言,根据空间尺度的不同,预计群落对预测气候变化的反应远大于对工业规模波浪能开采的反应。综合来看,能源开采可能会减少与气候变化相关的岩石海岸波浪暴露增加所产生的影响。预测特定地点的生物群落如何应对波浪能的变化,为长期的强迫因素提供了宝贵的海洋资源管理工具。
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引用次数: 0
Deep learning for detection and counting of Nephrops norvegicus from underwater videos 利用深度学习从水下视频中检测和计算牛蛙的数量
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-07-23 DOI: 10.1093/icesjms/fsae089
Antoni Burguera Burguera, Francisco Bonin-Font, Damianos Chatzievangelou, Maria Vigo Fernandez, Jacopo Aguzzi
The Norway lobster (Nephrops norvegicus) is one of the most important fishery items for the EU blue economy. This paper describes a software architecture based on neural networks, designed to identify the presence of N. norvegicus and estimate the number of its individuals per square meter (i.e. stock density) in deep-sea (350–380 m depth) Fishery No-Take Zones of the northwestern Mediterranean. Inferencing models were obtained by training open-source networks with images obtained from frames partitioning of in submarine vehicle videos. Animal detections were also tracked in successive frames of video sequences to avoid biases in individual recounting, offering significant success and precision in detection and density estimations.
挪威龙虾(Nephrops norvegicus)是欧盟蓝色经济中最重要的渔业资源之一。本文介绍了一种基于神经网络的软件架构,旨在识别挪威龙虾的存在,并估算其在地中海西北部深海(350-380 米深)渔业禁捕区每平方米的个体数量(即种群密度)。推理模型是通过对潜水器视频中的帧分割图像进行开源网络训练获得的。此外,还对连续帧视频序列中的动物探测进行了跟踪,以避免单个重述中的偏差,从而在探测和密度估算方面取得了显著的成功和精确度。
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引用次数: 0
Adding the risk of stock collapse over time to stock assessments and harvest allocation decisions 在种群评估和收获分配决策中增加种群随时间崩溃的风险
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-07-10 DOI: 10.1093/icesjms/fsae084
Benjamin Blanz, Roland Cormier, Douglas Swain, Hermann Held
Globally, many fisheries have experienced collapse even though most of these fisheries had management plans with harvest control rules and were supported by scientific modelling that explicitly accounted for uncertainty. Recognizing that an informed decision on risks of a stock collapse versus harvest is only possible when the outcomes of the technical measures are described explicitly. We propose that the cumulative probability of stock collapse over a range of harvest levels would provide a perspective of the future consequences of harvesting decisions. Adding to the harvest level negotiations the consideration of how long a fishery should sustain the livelihoods of fishers may provide managers, fishers, and other stakeholders with a more tangible understanding of the risks within the context of precautionary principles in decision-making. We use a time series from the Canadian Cod fishery of the Southern Gulf of St. Lawrence, from which we construct and calibrate a simplified model as an emulator of more comprehensive models to demonstrate the approach. The implications of adding an analysis of the probabilities of stock collapse for a range of harvest levels and using a risk matrix to inform decision-making are discussed for four selected years 1974, 1986, 1993, and 2017.
在全球范围内,许多渔业经历了崩溃,尽管这些渔业中的大多数都制定了具有捕捞控制规则的管理计划,并得到了明确考虑不确定性的科学建模的支持。我们认识到,只有在明确描述技术措施的结果时,才有可能就种群崩溃风险与捕捞量做出知情决策。我们建议,在一系列捕捞水平上,种群崩溃的累积概率将为捕捞决策的未来后果提供一个视角。在捕捞水平谈判之外,考虑渔业应维持渔民生计多长时间,可让管理者、渔民和其他利益相关者更切实地了解决策中预防性原则下的风险。我们利用加拿大圣劳伦斯湾南部鳕鱼渔业的时间序列,构建并校准了一个简化模型,作为更全面模型的模拟器来演示该方法。针对 1974、1986、1993 和 2017 这四个选定年份,讨论了在一系列捕捞水平下增加种群崩溃概率分析以及使用风险矩阵为决策提供信息的影响。
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引用次数: 0
Structure size may affect fish density around oil platforms 结构尺寸可能会影响石油平台周围的鱼类密度
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-07-04 DOI: 10.1093/icesjms/fsae083
Joshua M Lawrence, Michael R Heath, Douglas C Speirs, Paul G Fernandes
Thousands of offshore oil and gas platforms have been installed worldwide and are known to act as artificial reefs. Many platforms are nearing the end of their operational lives and will soon require decommissioning, but uncertainty remains about the impacts of these structures, and their removal, on the environment. Fish aggregate at platforms, but little is known about the extent of these effects in the North Sea and the causes of variability in these associations. Here, an uncrewed surface vessel (USV) was used to collect fisheries acoustic data on distributions of schooling and non-schooling fish around six oil platforms, collecting data within tens of metres of four of the surveyed platforms. In areas with more platforms, more non-schooling fish were found, and the probability of detecting fish schools was higher. Interplatform variability was found in trends in non-schooling fish density with increasing distance from platform, but the relationship was found to be strongest and most negative at the larger platforms. These findings may influence future management decisions around the decommissioning of these platforms, particularly if some structure is to be left in place to maximize the potential benefits associated with these artificial reef effects.
全世界已安装了数千个近海石油和天然气平台,众所周知,这些平台可以起到人工礁石的作用。许多平台的运行寿命即将结束,不久将需要退役,但这些结构及其拆除对环境的影响仍存在不确定性。鱼类会聚集在平台上,但人们对北海中这些影响的程度以及造成这些关联变化的原因知之甚少。在此,我们使用一艘无装载水面船只(USV)收集了六个石油平台周围群游和非群游鱼类分布的渔业声学数据,并收集了其中四个调查平台数十米范围内的数据。在平台较多的区域,发现的非群鱼较多,探测到鱼群的概率较高。随着与平台距离的增加,非校鱼密度的变化趋势在平台间存在差异,但在较大的平台上,这种关系最为密切,也最为负面。这些发现可能会影响未来围绕这些平台退役的管理决策,特别是如果要保留一些结构,以最大限度地发挥这些人工鱼礁效应的潜在效益。
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引用次数: 0
Weakly supervised classification of acoustic echo-traces in a multispecific pelagic environment 多特定水层环境中回声痕迹的弱监督分类
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-07-04 DOI: 10.1093/icesjms/fsae085
Aitor Lekanda, Guillermo Boyra, Maite Louzao
In trawl-acoustic methods, machine learning can objectively assign species composition to echo-traces, providing a reproducible approach for improving biomass assessments and the study of schooling behaviour. However, the automatic classification of schools in multispecies environments is challenging due to the difficulty of obtaining ground truth information for training. We propose a weakly supervised approach to classify schools into seven classes using catch proportions as probabilities. A balancing strategy was used to address high dominance of some species while preserving species mixtures. As the composition of schools from multispecific catches was unknown, model performance was evaluated at the school and haul level. Accuracy was 63.5% for schools from single-species catches or those identified by experts, and a 20.1% error was observed when comparing predicted and actual species proportions at the haul level. Positional and energetic descriptors were highly relevant, while morphological characteristics showed low discriminative power. The highest accuracies were obtained for juvenile anchovy and Muller’s pearslide, while sardine was the most challenging to classify. Our multioutput approach allowed the introduction of a metric to assess the confidence of the model in classifying each school. As a result, we introduced a method to classify echo-traces considering prediction reliability.
在拖网声学方法中,机器学习可以客观地将物种组成分配给回声痕迹,为改进生物量评估和学校行为研究提供了一种可重复的方法。然而,由于难以获得用于训练的基本真实信息,在多物种环境中对鱼群进行自动分类具有挑战性。我们提出了一种弱监督方法,利用捕获比例作为概率将鱼群分为七类。在保留物种混杂的同时,我们采用了一种平衡策略来解决某些物种占优势的问题。由于来自多物种渔获物的鱼群组成情况不明,因此在鱼群和拖网层面对模型性能进行了评估。对于来自单一物种渔获物或专家确定的鱼群,准确率为 63.5%,而在鱼群层面比较预测和实际物种比例时,发现误差为 20.1%。位置和能量描述因子的相关性很高,而形态特征的鉴别力较低。幼鯷和 Muller's pearslide 的准确度最高,而沙丁鱼的分类难度最大。我们的多输出方法允许采用一种指标来评估模型对每种鱼类分类的可信度。因此,我们引入了一种考虑预测可靠性的回声轨迹分类方法。
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引用次数: 0
Otoliths as chemical archives through ontogeny reveal distinct migratory strategies of Atlantic halibut within the Gulf of St. Lawrence 耳石作为个体发育过程中的化学档案,揭示了大西洋比目鱼在圣劳伦斯湾的独特洄游策略
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-07-03 DOI: 10.1093/icesjms/fsae081
Charlotte Gauthier, Jonathan A D Fisher, Dominique Robert, Pascal Sirois
In marine fishes of commercial interest, defining habitat use and migration strategies through ontogeny can help better understand the structure and dynamics of harvested populations and guide their management. The present study relied on otolith chemistry to identify three contingents within the Atlantic halibut (Hippoglossus hippoglossus) stock in the Gulf of St. Lawrence (GSL). We differentiated two chemical signatures from otolith edges, one for shallow (<100 m) and another one for deep (>100 m) waters. By identifying transitions between the deep and shallow habitats, we found that most halibut display migrations from the deep waters to shallow waters during the first 3 years of life. After reaching maturity, most halibut distributing in northern regions of the GSL became full-time residents in deep areas of the GSL. In contrast, halibut found in summer on the shallow plateau of the southern GSL displayed migrating behaviour between shallow (summer) and deep (winter) waters throughout their lives, either on an annual or irregular basis. Overall, our results demonstrate that otolith chemical signatures serve as natural markers of geographically distinct marine environments, facilitating the identification and reconstruction of environmental histories of long-lived marine fishes.
对于具有商业价值的海洋鱼类,通过本体发育确定栖息地的使用和洄游策略有助于更好地了解捕捞种群的结构和动态,并指导其管理。本研究依靠耳石化学特征来确定圣劳伦斯湾(GSL)大西洋大比目鱼(Hippoglossus hippoglossus)种群中的三种情况。我们从耳石边缘区分出两种化学特征,一种是浅水(<100 m),另一种是深水(>100 m)。通过识别深层和浅层栖息地之间的过渡,我们发现大多数大比目鱼在出生后的头三年会从深海洄游到浅海。成年后,大多数分布在全球南极海域北部地区的大比目鱼成为全球南极海域深海区的全职居民。与此相反,夏季在南大洋洲浅海高原发现的大比目鱼,一生都在浅海(夏季)和深海(冬季)之间洄游,每年或不定期洄游。总之,我们的研究结果表明,耳石化学特征是不同地理海洋环境的天然标记,有助于识别和重建长寿海洋鱼类的环境历史。
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引用次数: 0
The first 100 years of the ICES Journal of Marine Science 国际海洋考察理事会《海洋科学杂志》创刊 100 周年
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-06-28 DOI: 10.1093/icesjms/fsae082
Emory D Anderson
To celebrate the centenary of the ICES Journal of Marine Science in 2026, this article takes a retrospective look at what transpired with the Journal during those 100 years. Beginning with the original intent of the publication, its subsequent transformation is chronicled from being a French-titled journal focussing mainly on northeast Atlantic topics with three issues per volume to its present status as a well-known and highly rated publication 9–10 issues per year featuring papers from around the world addressing the full range of marine science investigations. The publication, subscriptions, and distribution of the Journal were initially handled by Danish firms, but were later contracted to major publishing companies such as Academic Press and Oxford University Press, the current publisher. Brief commentaries are provided of the nine individuals who have served as editor or editor-in-chief of the Journal throughout its 100-year history, as well as some who have served as assisting editors or editorial assistants in the ICES Secretariat. The management and promotion of the Journal by ICES are also reviewed.
为庆祝国际海洋考察理事会《海洋科学杂志》(ICES Journal of Marine Science)于 2026 年创刊一百周年,本文回顾了这一百年来《海洋科学杂志》的发展历程。文章从该刊物的初衷开始,记述了其随后的转变,从主要关注东北大西洋主题、每卷三期的法文刊物,到目前作为每年 9-10 期、刊载来自世界各地涉及各种海洋科学研究的论文的知名且评价极高的刊物。期刊》的出版、订阅和发行最初由丹麦公司负责,后来承包给了学术出版社和牛津大学出版社等大型出版公司,也就是现在的出版商。在《学报》100 年的历史中,有 9 人担任过编辑或主编,还有一些人曾在国际海洋考察理事会秘书处担任过助理编辑或编辑助理,本文对他们进行了简要介绍。还回顾了国际海洋考察理事会对《学报》的管理和推广。
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引用次数: 0
Patterns of declining zooplankton energy in the northeast Atlantic as an indicator for marine survival of Atlantic salmon 作为大西洋鲑鱼海洋生存指标的东北大西洋浮游动物能量下降模式
IF 3.3 2区 农林科学 Q1 FISHERIES Pub Date : 2024-06-22 DOI: 10.1093/icesjms/fsae077
Emma Tyldesley, Neil S Banas, Graeme Diack, Richard Kennedy, Jonathan Gillson, David G Johns, Colin Bull
Return rates of Atlantic salmon (Salmo salar) from the sea to European rivers have declined in recent decades. The first months at sea are critical for growth and survival; recent evidence suggests that reduced food availability may be a contributory factor to the observed declines. Here, zooplankton abundance data are used to derive a measure of prey energy available to forage fish prey of salmon during early marine migration. This zooplankton prey energy has significantly and dramatically declined over much of the northeast Atlantic, and specifically within key salmon migration domains, over the past 60 years. Marine return rates from a set of southern European populations are found to exhibit clustering not entirely predictable from geographical proximity. Variability in grouped return rates from these populations is correlated with zooplankton energy on a range of scales, demonstrating the potential use of zooplankton energy as an indicator of salmon marine survival. Comparison with environmental variables derived from ocean model reanalysis data suggests zooplankton energy is regulated by a combination of climate change impacts on ecosystem productivity and multi-decadal variability in water mass influence along the migration routes.
近几十年来,大西洋鲑鱼(Salmo salar)从海洋返回欧洲河流的比率有所下降。在海上的头几个月对生长和存活至关重要;最近的证据表明,食物供应的减少可能是导致观察到的下降的一个因素。在这里,浮游动物丰度数据被用来衡量鲑鱼在早期海洋洄游过程中觅食鱼类可获得的猎物能量。在过去 60 年中,浮游动物的猎物能量在大西洋东北部大部分地区,特别是在鲑鱼洄游的关键区域,出现了显著和急剧下降。研究发现,一组南欧种群的海洋回归率呈现出集群现象,而这种集群现象并不能完全从地理上的接近性预测出来。这些种群的分组回归率的变化与浮游动物能量在一定范围内存在相关性,这表明浮游动物能量有可能被用作鲑鱼海洋生存的指标。与海洋模型再分析数据得出的环境变量进行比较后发现,浮游动物的能量受气候变化对生态系统生产力的影响和迁徙路线沿线水团影响的十年变化的综合影响。
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引用次数: 0
期刊
ICES Journal of Marine Science
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