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Transformative advances in veterinary laboratory practices: Evaluating the impact of preliminary training in Khyber Pakhtunkhwa and Balochistan provinces of Pakistan 兽医实验室实践的变革性进步:评估初步培训在巴基斯坦开伯尔巴图克瓦省和俾路支省的影响
Q1 Social Sciences Pub Date : 2024-10-23 DOI: 10.1016/j.jobb.2024.10.001
Javed Khan , Asghar Ali , Shaukat Khan , Murad Khan , Saima Mohsin , Cecelia Madsen
Veterinary laboratories face distinct challenges in Pakistan, including inadequate infrastructure, resources, and training opportunities, especially in the Khyber Pakhtunkhwa and Balochistan regions. This study aimed to evaluate the impact of training sessions for veterinary laboratory staff to improve methods and protocols related to sample collection, storage, and transport, while ensuring strict compliance with biosafety and biosecurity guidelines. The study employed a mixed methods approach, incorporating qualitative and quantitative research techniques. Hands-on training, essential laboratory equipment, and a comprehensive training kit, including personal protective equipment (PPE), were provided to 13 laboratories within the Livestock and Dairy Development Departments of Khyber Pakhtunkhwa and Balochistan. A random sample of 152 individuals from a cohort of 314 trained personnel was selected to assess procedural changes post-training, supplemented by Training Needs Assessments (TNAs) and follow-up visits. Data collection involved a combination of open- and closed-ended questionnaires, individual interviews, and focus group discussions by trained enumerators to maintain a standardized approach. Significant improvements were observed in laboratory practices and procedures, staff competency in sample collection, necropsy techniques, labeling, storage, a chain of custody, packaging, and transport, as well as biosafety and biosecurity practices, such as effective use of PPEs, good laboratory practices, standard operating procedures, handling of sharps, and waste management. However, areas needing refinement, particularly waste management protocols, were identified. The integrated approach combining TNAs, training initiatives, and resource distribution, including laboratory equipment and PPEs, was pivotal in achieving these outcomes. This comprehensive strategy provides a basis for improving biosafety and biosecurity measures within laboratories, thereby contributing to the global effort to mitigate unauthorized access to high-risk pathogens.
巴基斯坦的兽医实验室面临着独特的挑战,包括基础设施、资源和培训机会不足,尤其是在开伯尔巴图克瓦和俾路支地区。本研究旨在评估兽医实验室工作人员培训课程的影响,以改进与样本采集、储存和运输有关的方法和协议,同时确保严格遵守生物安全和生物安保准则。研究采用了混合方法,融合了定性和定量研究技术。为开伯尔-普赫图赫瓦省和俾路支省畜牧和奶业发展部的 13 个实验室提供了实践培训、基本实验室设备和综合培训包,其中包括个人防护设备 (PPE)。从 314 名受训人员中随机抽取了 152 人,以评估培训后的程序变化,并辅以培训需求评估 (TNA) 和后续访问。数据收集采用了开放式和封闭式问卷、个别访谈和焦点小组讨论相结合的方式,由经过培训的调查员进行,以保持方法的标准化。在实验室实践和程序、工作人员在样本采集、尸体解剖技术、标签、储存、监管链、包装和运输方面的能力,以及生物安全和生物安保实践(如有效使用个人防护设备、良好的实验室实践、标准操作程序、利器处理和废物管理)方面都有显著改善。不过,也发现了需要改进的地方,特别是废物管理规程。将技术需要评估、培训举措和资源分配(包括实验室设备和个人防护设备)相结合的综合方法在取得这些成果方面发挥了关键作用。这一综合战略为改进实验室内的生物安全和生物安保措施奠定了基础,从而有助于全球努力减少未经授权获取高风险病原体的情况。
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引用次数: 0
Lessons for biosecurity education from the International Nuclear Security Education Network 国际核安全教育网络为生物安全教育提供的经验教训
Q1 Social Sciences Pub Date : 2024-10-04 DOI: 10.1016/j.jobb.2024.09.002
Iris Magne , Olivia Ibbotson , Lijun Shang , Malcolm Dando
With the rapid advances in technology and life science, biological security is now at a defining moment. The mandate of the 2022 Biological and Toxin Weapons Convention 9th Review Conference emphasised the urgent need for new tools to strengthen the Convention. In this paper, we review the development and efforts of the International Nuclear Security Education Network (INSEN) to provide examples of best practice for implementation of the newly founded International Biological Security Education Network (IBSEN). Learning from the lessons of the INSEN, the sustainability of the network through continuous engagement of its members is essential for the further development of global biosecurity education.
随着技术和生命科学的飞速发展,生物安全正处于决定性时刻。2022 年《生物和毒素武器公约》第九次审议大会的任务强调,迫切需要新的工具来加强《公约》。在本文中,我们回顾了国际核安全教育网络(INSEN)的发展和努力,为新成立的国际生物安全教育网络(IBSEN)的实施提供最佳实践范例。汲取国际核安全教育网络的经验教训,通过其成员的持续参与实现该网络的可持续性对于进一步发展全球生物安全教育至关重要。
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引用次数: 0
Numerical simulations of a two-strain dengue model to investigate the efficacy of the deployment of Wolbachia-carrying mosquitoes and vaccination for reducing the incidence of dengue infections 对双菌株登革热模型进行数值模拟,研究部署携带沃尔巴克氏体的蚊子和接种疫苗对降低登革热感染率的功效
Q1 Social Sciences Pub Date : 2024-09-05 DOI: 10.1016/j.jobb.2024.08.003
Meksianis Z. Ndii , Nursanti Anggriani , Bertha S. Djahi , Sanubari Tansah Tresna , Fatuh Inayaturohmat

This study investigated the usefulness of a two-serotype dengue mathematical model to gain insights into the effects of antibody-dependent enhancement and temperature on dengue transmission dynamics in the presence of vaccination and Wolbachia-carrying mosquitoes. In particular, the effects of temperature on the mosquito death and maturation rates in secondary infections were examined. A deterministic mathematical model was formulated and analysed to address this problem. The results suggest that controlling the population of aquatic mosquitoes is appropriate for reducing the incidence of secondary infections. Furthermore, the wAu Wolbachia strain was more effective in reducing secondary infections.

这项研究调查了登革热双倍型数学模型的实用性,以深入了解在接种疫苗和携带沃尔巴克氏体蚊子的情况下,抗体依赖性增强和温度对登革热传播动态的影响。特别是,研究了温度对二次感染中蚊子死亡率和成熟率的影响。为解决这一问题,建立并分析了一个确定性数学模型。结果表明,控制水生蚊子的数量可减少二次感染的发生率。此外,wAu Wolbachia 菌株在减少二次感染方面更为有效。
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引用次数: 0
A stochastic epidemic model with time delays and unreported cases based on Markovian switching 基于马尔可夫转换的具有时间延迟和未报告病例的随机流行病模型
Q1 Social Sciences Pub Date : 2024-09-05 DOI: 10.1016/j.jobb.2024.08.002
H.J. Alsakaji , Y.A. El-Khatib , F.A. Rihan (PhD; DSc) , A. Hashish

Disease dynamics are influenced by changes in the environment. In this study, unreported cases (U), environmental perturbations, and exogenous events are included in the epidemic Susceptible–Exposed–Infectious–Unreported–Removed model with time delays. We examine the process of switching from one regime to another at random. Ergodicity and stationary distribution criteria are discussed. A Lyapunov function is used to determine several conditions for disease extinction. The spread of a disease is affected when transitioning from one random regime to another via sudden external events, such as hurricanes. The model and theoretical results are validated using numerical simulations.

疾病动态受环境变化的影响。在本研究中,未报告病例(U)、环境扰动和外生事件被纳入带有时间延迟的流行病易感-暴露-感染-未报告-移出模型中。我们研究了从一种机制随机切换到另一种机制的过程。讨论了遍历性和静态分布标准。利用 Lyapunov 函数确定了疾病灭绝的几个条件。从一种随机状态过渡到另一种随机状态时,疾病的传播会受到突发性外部事件(如飓风)的影响。通过数值模拟验证了模型和理论结果。
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引用次数: 0
Genetic diversity, virulence profiles, and antimicrobial resistance of Salmonella enterica serovar Typhi isolated from typhoid fever patients in Baghdad, Iraq 从伊拉克巴格达伤寒患者中分离出的肠炎血清型伤寒沙门氏菌的遗传多样性、毒力特征和抗菌药耐药性
Q1 Social Sciences Pub Date : 2024-08-17 DOI: 10.1016/j.jobb.2024.08.001
Muna Sabah Dawood, Nadheema Hammood Hussein, Khetam Habeeb Rasool

Typhoid fever is an important health issue in developing countries, and the pathogenicity of Salmonella enterica serovar Typhi (S. ser. Typhi) depends on the presence of different virulence factors. Therefore, this study aimed to investigate the spread of virulence genes among S. Typhi isolates from patients with typhoid fever in Baghdad, Iraq. Sixty S. Typhi isolates were collected from several hospitals in Baghdad and identified using VITEK-II and confirmed by polymerase chain reaction (PCR) to detect the 16S rRNA gene. After testing their susceptibility to different antimicrobials (via the disk diffusion method), we found the highest resistance rates (100 %) were to ampicillin, piperacillin, cefotaxime, and ceftriaxone. The highest sensitivity rates (100 %) were to ertapenem, imipenem, meropenem, and sulfamethoxazole/trimethoprim. The presence of genes encoding for virulence in S. Typhi isolates was tested by conventional PCR. The results showed that out of 60 isolates, 59 (98.3 %), 59 (98.3 %), 58 (96.7 %), and 60 (100 %) were positive for viaB, staA, cdtB, and orfL genes, respectively. The sequencing of PCR products (viaB, staA, cdtB, and orfL genes) was carried out at the Macrogen Company (Seoul, Korea). The sequences were compared with nucleotide sequences in the BLAST GenBank database, and data obtained from the sequencing of these virulence genes were submitted to GenBank under different accession numbers. A phylogenetic analysis of the 16S rRNA gene sequence found a high similarity between local sequences and the closely related sequences of genes in GenBank. The presence of the viaB, staA, cdtB, and orfL virulence genes in nearly all of the isolates under examination suggests that they play an important role in the pathogenicity of local isolates.

伤寒是发展中国家的一个重要健康问题,而肠炎沙门氏菌(S. ser. Typhi)的致病性取决于不同毒力因子的存在。因此,本研究旨在调查伊拉克巴格达伤寒患者中分离出的伤寒沙门氏菌毒力基因的传播情况。研究人员从巴格达的几家医院收集了 60 株伤寒杆菌分离株,使用 VITEK-II 进行鉴定,并通过聚合酶链式反应(PCR)检测 16S rRNA 基因进行确认。在检测了它们对不同抗菌药物的敏感性(通过磁盘扩散法)后,我们发现对氨苄西林、哌拉西林、头孢他啶和头孢曲松的耐药率最高(100%)。对厄他培南、亚胺培南、美罗培南和磺胺甲噁唑/曲安奈德的敏感率最高(100%)。通过传统的聚合酶链式反应(PCR)检测了伤寒杆菌分离物中是否存在编码毒力的基因。结果显示,在 60 个分离株中,分别有 59 个(98.3%)、59 个(98.3%)、58 个(96.7%)和 60 个(100%)的 viaB、staA、cdtB 和 orfL 基因呈阳性。PCR产物(viaB、staA、cttB和orfL基因)的测序在Macrogen公司(韩国首尔)进行。测序结果与 BLAST GenBank 数据库中的核苷酸序列进行了比较,这些毒力基因的测序数据以不同的登录号提交给了 GenBank。对 16S rRNA 基因序列进行的系统进化分析发现,本地序列与 GenBank 中密切相关的基因序列具有很高的相似性。几乎所有被检测的分离株中都含有 viaB、staA、cttB 和 orfL 致病基因,这表明它们在本地分离株的致病性中起着重要作用。
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引用次数: 0
Pseudovirus technology in global health: A critical need for robust biosecurity measures 全球卫生领域的伪病毒技术:迫切需要强有力的生物安全措施
Q1 Social Sciences Pub Date : 2024-08-06 DOI: 10.1016/j.jobb.2024.07.002
Abhijit Poddar , S.R. Rao
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引用次数: 0
Computational modeling and inhibition of SARS-COV-2 Papain-like protease enzyme: A potential therapeutic approach for COVID-19 计算建模和抑制 SARS-COV-2 Papain 样蛋白酶:COVID-19 的潜在治疗方法
Q1 Social Sciences Pub Date : 2024-08-03 DOI: 10.1016/j.jobb.2024.07.001
Auwal Rabiu Auwal , Isa Abdullahi Baba , Evren Hincal , Fathalla A. Rihan

This study aims to investigate the potential impact of inhibitors targeting the papain-like protease (PLpro) of SARS-CoV-2 on viral replication and the host immune response. A mathematical model was developed to simulate the interaction among susceptible cells, infected cells, PLpro, and immune cells, incorporating data on PLpro inhibition. Through numerical simulations using MATLAB, the model parameters were estimated based on available statistical data. The results indicate that strategically positioned inhibitors could impede the virus’s access to host cellular machinery, thereby enhancing the immune response and gradually reducing susceptible and infected cells over time. The dynamics of the viral enzyme PLpro showed reduced activity with the introduction of the inhibitor, leading to a decline in viral replication. Moreover, the immune cell population exhibited functional recovery as the inhibitor suppressed PLpro activity. These findings suggest that inhibitors targeting PLpro may serve as therapeutic interventions against SARS-CoV-2 by inhibiting viral replication and bolstering the immune response.

本研究旨在探讨针对 SARS-CoV-2 的木瓜蛋白酶(PLpro)的抑制剂对病毒复制和宿主免疫反应的潜在影响。研究建立了一个数学模型来模拟易感细胞、感染细胞、PLpro 和免疫细胞之间的相互作用,并结合了有关 PLpro 抑制的数据。通过使用 MATLAB 进行数值模拟,根据现有统计数据对模型参数进行了估计。结果表明,有策略地放置抑制剂可以阻碍病毒进入宿主细胞机制,从而增强免疫反应,并随着时间的推移逐渐减少易感细胞和受感染细胞。病毒酶 PLpro 的动态变化表明,抑制剂的引入会降低病毒酶 PLpro 的活性,从而导致病毒复制能力下降。此外,由于抑制剂抑制了 PLpro 的活性,免疫细胞群表现出功能恢复。这些研究结果表明,针对 PLpro 的抑制剂可以通过抑制病毒复制和增强免疫反应来干预 SARS-CoV-2 的治疗。
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引用次数: 0
Exploring the Interplay Between Social Awareness and the Use of Bed Nets in a Malaria Control Program 探索疟疾控制计划中社会意识与蚊帐使用之间的相互作用
Q1 Social Sciences Pub Date : 2024-07-14 DOI: 10.1016/j.jobb.2024.06.005
Iffatricia Haura Febiriana , Dipo Aldila , Bevina Desjwiandra Handari , Puji Budi Setia Asih , Muhamad Hifzhudin Noor Aziz

This research aims to understand the effect of human awareness and the use of bed nets on malaria control programs. A deterministic host-vector mathematical model was utilized and simplified using the Quasi-Steady State Approximation, assuming the mosquito population is at equilibrium due to its fast, dynamic behavior. The model reveals two equilibrium states: the malaria-free equilibrium and the endemic equilibrium. The malaria-free equilibrium is locally asymptotically stable when the basic reproduction number is less than one and unstable if it is larger than one. Conversely, the malaria-endemic equilibrium is unique and stable if the reproduction number exceeds one and does not exist otherwise. Based on incidence data from Papua, parameter estimation and sensitivity analyses indicate that human awareness and the use of bed nets significantly reduce the reproduction number. To address budget constraints for interventions, the model was reformulated as an optimal control problem, characterized using the Pontryagin Maximum Principle, and solved with the forward–backward sweep method. Numerical experiments were conducted to assess the impact of various scenarios on the malaria control program. Cost-effectiveness analyses employing ACER, ICER, and IAR metrics suggest that while the combined implementation of awareness campaigns and bed nets effectively reduces infections, it incurs high costs. In contrast, implementing human awareness campaigns alone emerges as the best strategy based on ACER, ICER, and IAR standards. This study demonstrates that enhancing human awareness and promoting the use of bed nets are effective strategies for controlling malaria. However, due to budget constraints, focusing solely on awareness campaigns proves to be the most cost-effective intervention. This approach not only reduces malaria transmission but also optimizes resource allocation, highlighting the importance of targeted educational programs in public health initiatives for malaria control.

这项研究旨在了解人类意识和蚊帐的使用对疟疾控制计划的影响。研究利用了一个确定性宿主-媒介数学模型,并使用准稳态近似法进行了简化,假设蚊子种群因其快速、动态的行为而处于平衡状态。该模型揭示了两种平衡状态:无疟疾平衡和地方病平衡。当基本繁殖数小于 1 时,无疟疾平衡是局部渐近稳定的;当基本繁殖数大于 1 时,无疟疾平衡是不稳定的。相反,如果繁殖数大于 1,疟疾流行均衡是唯一且稳定的,否则不存在。根据巴布亚的发病率数据,参数估计和敏感性分析表明,人的意识和蚊帐的使用能显著降低繁殖数。为解决干预措施的预算限制问题,该模型被重新表述为一个最优控制问题,利用庞特里亚金最大原则对其进行表征,并采用前向-后向扫频方法进行求解。通过数值实验评估了各种方案对疟疾控制计划的影响。采用 ACER、ICER 和 IAR 指标进行的成本效益分析表明,虽然联合实施宣传活动和蚊帐能有效降低感染率,但成本较高。相比之下,根据 ACER、ICER 和 IAR 标准,单独开展提高人类意识的活动是最佳策略。这项研究表明,提高人们的意识和推广使用蚊帐是控制疟疾的有效策略。然而,由于预算限制,仅专注于宣传活动被证明是最具成本效益的干预措施。这种方法不仅能减少疟疾传播,还能优化资源分配,突出了有针对性的教育计划在疟疾控制公共卫生行动中的重要性。
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引用次数: 0
Modeling and optimal control of COVID-19 with comorbidity and three-dose vaccination in Indonesia 印度尼西亚 COVID-19 合并症和三剂疫苗接种的建模和优化控制
Q1 Social Sciences Pub Date : 2024-07-06 DOI: 10.1016/j.jobb.2024.06.004
Muhammad Abdurrahman Rois , Fatmawati , Cicik Alfiniyah , Santi Martini , Dipo Aldila , Farai Nyabadza

This paper presents and examines a COVID-19 model that takes comorbidities and up to three vaccine doses into account. We analyze the stability of the equilibria, examine herd immunity, and conduct a sensitivity analysis validated by data on COVID-19 in Indonesia. The disease-free equilibrium is locally and globally asymptotically stable whenever the basic reproduction number is less than one, while an endemic equilibrium exists and is globally asymptotically stable when the number is greater than one. Subsequently, the model incorporates two effective measures, namely public education and enhanced medical care, to determine the most advantageous approach for mitigating the transmission of the disease. The optimal control model is then determined using Pontryagin’s maximum principle. The integrated control strategy is the best method for reliably safeguarding the general population against COVID-19 infection. Cost evaluations and numerical simulations corroborate this conclusion.

本文介绍并研究了将合并症和多达三种疫苗剂量考虑在内的 COVID-19 模型。我们分析了均衡的稳定性,研究了群体免疫,并通过印度尼西亚 COVID-19 的数据进行了敏感性分析。当基本繁殖数小于 1 时,无病平衡是局部和全局渐近稳定的,而当基本繁殖数大于 1 时,存在地方病平衡,并且是全局渐近稳定的。随后,该模型纳入了两种有效措施,即公共教育和加强医疗保健,以确定缓解疾病传播的最有利方法。然后,利用庞特里亚金最大原则确定最佳控制模型。综合控制策略是可靠保护大众免受 COVID-19 感染的最佳方法。成本评估和数值模拟证实了这一结论。
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引用次数: 0
Addressing poxvirus challenges in the Middle East to enhance biosafety and biosecurity measures 应对中东痘病毒挑战,加强生物安全和生物安保措施
Q1 Social Sciences Pub Date : 2024-07-02 DOI: 10.1016/j.jobb.2024.06.003
Laith N. AL-Eitan , Haneen O. Ali , Hana S. Abu Kharmah , Maryam K. Alasmar , Iliya Y. Khair , Ahmad H. Mihyar

The emergence and zoonotic transmission of poxviruses in the Middle East have been recognized as complex public health issues. Poxviruses, a vast family of DNA viruses, can infect many hosts, including animals and humans. The Middle East has had multiple epidemics of poxvirus infections (e.g., Monkeypox, Smallpox, and Camelpox) that have raised concerns owing to their detrimental effects on livestock, wildlife, and sporadic human cases. This review aims to thoroughly examine the complexity of the epidemiological patterns, intricate genetic diversity, and several contributing factors that support the emergence and zoonotic transmission of poxviruses in the Middle East. Several aspects of poxviruses contribute to the emergence of endemics and zoonotic breakouts, such as the complex nature of human-animal interactions, environmental changes, and their subtle capacity for viral adaptability. This review was compiled in the hopes of contributing to the current understanding of poxvirus biology and its implications for human and animal health in the Middle East. We provide a comprehensive overview of the most common poxviruses in the Middle East, including their classification, structure, replication cycle, pathogenesis, route of transmissions, and of how the Middle East has developed ways to mitigate these biological threats.

痘病毒在中东地区的出现和人畜共患传播已被视为复杂的公共卫生问题。痘病毒是一个庞大的 DNA 病毒家族,可感染多种宿主,包括动物和人类。中东地区曾多次发生痘病毒感染(如猴痘、天花和骆驼痘)疫情,对牲畜、野生动物和零星人类病例造成的危害引起了人们的关注。本综述旨在深入研究流行病学模式的复杂性、错综复杂的遗传多样性以及支持痘病毒在中东地区出现和人畜共患传播的若干诱因。痘病毒的几个方面促成了地方流行病的出现和人畜共患病的爆发,例如人与动物之间复杂的相互作用、环境变化及其微妙的病毒适应能力。编写这篇综述的目的是希望加深人们对痘病毒生物学及其对中东地区人类和动物健康影响的了解。我们全面概述了中东地区最常见的痘病毒,包括它们的分类、结构、复制周期、致病机理、传播途径,以及中东地区如何开发出缓解这些生物威胁的方法。
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引用次数: 0
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