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Ankyrons: There Might Be a “Gold Mine” for Students, Scientists, and Clinicians 安基龙:可能是学生、科学家和临床医生的 "金矿"
Pub Date : 2024-02-02 DOI: 10.1021/cbmi.4c00004
Yingbo Li*,  and , Junfeng Wang*, 
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引用次数: 0
Activity-Independent Enzyme-Powered Amplification for Improving Signal Stability and Fidelity in Biosensing 独立于活性的酶促放大技术可提高生物传感中信号的稳定性和保真度
Pub Date : 2024-01-31 DOI: 10.1021/cbmi.3c00127
Yibo Zhou*, Shan Hu, Hong-Wen Liu, Xinyue Xiao, Weiju Chen, Sheng Yang, Huiqiu Shi, Zhengxuan Gu, Junbin Li, Ronghua Yang* and Zhihe Qing*, 

Enzymes are an important tool used for signal amplification in biosensing. However, traditional amplification methods based on enzymes are always dependent on their catalytic activities, so their signals fluctuate with the change of microenvironment (e.g., pH and temperature). In this work, we communicate an activity-independent enzyme-powered (AIEP) amplification strategy for biosensing to improve signal stability and fidelity. To verify this hypothesis, the monitoring of oxidative stress during drug-induced liver injury was carried out. Carboxylesterase (CEs), highly expressed in hepatic tissue, was selected as the amplification tool. A CEs configuration-matching fluorophore (CMF) was designed and screened, and a nanobeacon was fabricated by loading CMF within an O2•–-responsive polymeric micelle. Since the degradation of the nanobeacon was triggered by O2•–, CMF was released to bind with CEs, and the fluorescence was lit by CEs-CMF configuration matching but not catalytic reaction. Results demonstrated that the oxidative stress during drug-induced liver injury could be successfully monitored, and the hepatoprotective effects of repair drugs could be evaluated by cell and in vivo imaging. This strategy is flexible for bioactive molecules by altering the responsive unit and generally accessible for pharmacological evaluation.

酶是生物传感中信号放大的重要工具。然而,基于酶的传统放大方法始终依赖于酶的催化活性,因此其信号会随着微环境(如 pH 值和温度)的变化而波动。在这项工作中,我们交流了一种用于生物传感的独立于酶活性的(AIEP)放大策略,以提高信号的稳定性和保真度。为了验证这一假设,我们对药物诱导的肝损伤过程中的氧化应激进行了监测。肝组织中高表达的羧基酯酶(CEs)被选为放大工具。设计并筛选了一种与CEs构型相匹配的荧光团(CMF),并将CMF载入O2响应性聚合物胶束中制成了纳米信标。由于纳米灯塔的降解是由氧气触发的,CMF被释放出来与CEs结合,荧光是由CEs-CMF构型匹配而非催化反应点亮的。结果表明,该方法可成功监测药物性肝损伤过程中的氧化应激,并通过细胞和体内成像评估修复药物的保肝作用。通过改变反应单元,这种策略对于生物活性分子来说非常灵活,而且一般可用于药理学评估。
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引用次数: 0
Dual-Functional Fluorescent Probe in the Diagnosis of Liver Injury and the Evaluation of Drug Therapy with Double Signal Amplification 双信号放大的双功能荧光探针在肝损伤诊断和药物治疗评估中的应用
Pub Date : 2024-01-26 DOI: 10.1021/cbmi.3c00128
Chenchen Bian, Miaomiao Liu, Jiayi Cheng, Lei Yang*, Zhanxian Li* and Mingming Yu*, 

Viscosity and polarity are crucial microenvironmental parameters within cells, intimately linked to the physiological activities of organisms. We constructed and synthesized an innovative dual-functional fluorescent probe, DHBP. In the green channel, the fluorescence signal notably intensifies with decreasing environmental polarity, while in the red channel, fluorescence signal amplification occurs due to the collaborative effects of viscosity and polarity, resulting in more pronounced changes. Additionally, DHBP demonstrates high sensitivity in detecting changes in polarity and viscosity induced by drug-induced inflammation in cells and mice. Importantly, DHBP has been effectively utilized to monitor alterations in viscosity and polarity in the liver injury induced by diabetes in vivo in mice and further employed to assess the therapeutic efficacy of drugs. Therefore, DHBP holds promise for advancing research on viscosity and polarity in future studies of physiological and pathological processes.

粘度和极性是细胞内至关重要的微环境参数,与生物体的生理活动密切相关。我们构建并合成了一种创新的双功能荧光探针 DHBP。在绿色通道中,随着环境极性的降低,荧光信号明显增强;而在红色通道中,由于粘度和极性的共同作用,荧光信号会放大,从而产生更明显的变化。此外,DHBP 还能高灵敏度地检测药物诱导的细胞和小鼠炎症引起的极性和粘度变化。重要的是,DHBP 已被有效地用于监测糖尿病诱发的小鼠体内肝损伤的粘度和极性变化,并进一步用于评估药物的疗效。因此,DHBP 有望在未来的生理和病理过程研究中推动粘度和极性的研究。
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引用次数: 0
Label-Free, Noninvasive Bone Cell Classification by Hyperspectral Confocal Raman Microscopy 利用高光谱共焦拉曼显微镜进行无标记、无创骨细胞分类
Pub Date : 2024-01-24 DOI: 10.1021/cbmi.3c00106
Zachary T. Piontkowski*, Dulce C. Hayes, Anthony McDonald, Kalista Pattison, Kimberly S. Butler and Jerilyn A. Timlin*, 

Characterizing and identifying cells in multicellular in vitro models remain a substantial challenge. Here, we utilize hyperspectral confocal Raman microscopy and principal component analysis coupled with linear discriminant analysis to form a label-free, noninvasive approach for classifying bone cells and osteosarcoma cells. Through the development of a library of hyperspectral Raman images of the K7M2-wt osteosarcoma cell lines, 7F2 osteoblast cell lines, RAW 264.7 macrophage cell line, and osteoclasts induced from RAW 264.7 macrophages, we built a linear discriminant model capable of correctly identifying each of these cell types. The model was cross-validated using a k-fold cross validation scheme. The results show a minimum of 72% accuracy in predicting cell type. We also utilize the model to reconstruct the spectra of K7M2 and 7F2 to determine whether osteosarcoma cancer cells and normal osteoblasts have any prominent differences that can be captured by Raman. We find that the main differences between these two cell types are the prominence of the β-sheet protein secondary structure in K7M2 versus the α-helix protein secondary structure in 7F2. Additionally, differences in the CH2 deformation Raman feature highlight that the membrane lipid structure is different between these cells, which may affect the overall signaling and functional contrasts. Overall, we show that hyperspectral confocal Raman microscopy can serve as an effective tool for label-free, nondestructive cellular classification and that the spectral reconstructions can be used to gain deeper insight into the differences that drive different functional outcomes of different cells.

在多细胞体外模型中描述和识别细胞仍然是一项巨大的挑战。在这里,我们利用高光谱共焦拉曼显微镜和主成分分析以及线性判别分析,形成了一种无标记、非侵入性的骨细胞和骨肉瘤细胞分类方法。通过开发 K7M2-wt 骨肉瘤细胞系、7F2 成骨细胞系、RAW 264.7 巨噬细胞系和由 RAW 264.7 巨噬细胞诱导的破骨细胞的高光谱拉曼图像库,我们建立了一个线性判别模型,能够正确识别这些细胞类型。我们使用 k 倍交叉验证方案对模型进行了交叉验证。结果显示,预测细胞类型的准确率至少为 72%。我们还利用该模型重建了 K7M2 和 7F2 的光谱,以确定骨肉瘤癌细胞和正常成骨细胞是否存在拉曼所能捕捉到的显著差异。我们发现,这两种细胞的主要区别在于 K7M2 的 β 片状蛋白质二级结构与 7F2 的 α 螺旋蛋白质二级结构之间的显著差异。此外,CH2 变形拉曼特征的差异突出表明这些细胞的膜脂结构不同,这可能会影响整体的信号传递和功能对比。总之,我们的研究表明,高光谱共焦拉曼显微镜可作为一种有效的工具,用于无标记、无损的细胞分类,光谱重建可用于深入了解驱动不同细胞产生不同功能结果的差异。
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引用次数: 0
A Small Molecule Chemiluminophore with near 600 nm Emission for In Vivo Imaging of Myeloperoxidase and Inflammatory Diseases 用于体内髓过氧化物酶和炎症性疾病成像的近 600 纳米发射的小分子化学发光体
Pub Date : 2024-01-22 DOI: 10.1021/cbmi.3c00105
Tianjiao Meng, Xueru Zhang, Wei Tang, Chenghui Liu* and Xinrui Duan*, 

Chemiluminescence has emerged as a vital tool for bioimaging in vivo. The red shift emission of chemiluminophores is extremely useful for in vivo bioimaging. In this work, the conjugation system of the luminol was extended to achieve a red-shifted emission (591 nm) along with excellent water solubility. The probe (HM-ASPH-PF) has a molecular weight of only 396.42, which contains a benzothiazole and a cyclic phthalhydrazide structure. The probe has been used for in vivo luminescence imaging of neutrophil-mediated acute liver injury, including alcoholic liver injury (ALI) and acute liver failure (ALF) in mice, by exploiting myeloperoxidase (MPO) as a biomarker. The activated neutrophils were specifically imaged by HM-ASPH-PF. HM-ASPH-PF was also successfully applied to monitor the neutrophils in livers in mouse models of ALI and ALF. Consequently, HM-ASPH-PF, as an effective luminescent small molecule that possesses a red-shift emission near 600 nm, has been applied for the detection of MPO in living cells and neutrophil-mediated acute liver injury. This work also demonstrates the applied potential of the luminescent probe for the diagnosis of other neutrophil-associated liver diseases.

化学发光已成为体内生物成像的重要工具。化学发光体的红移发射对于体内生物成像非常有用。在这项工作中,发光酚的共轭体系得到了扩展,从而实现了红移发射(591 nm),并具有极佳的水溶性。探针(HM-ASPH-PF)的分子量仅为 396.42,含有苯并噻唑和环酞肼结构。该探针利用髓过氧化物酶(MPO)作为生物标记物,用于对中性粒细胞介导的急性肝损伤(包括酒精性肝损伤(ALI)和小鼠急性肝衰竭(ALF))进行体内发光成像。HM-ASPH-PF 可对活化的中性粒细胞进行特异性成像。HM-ASPH-PF 还成功地用于监测 ALI 和 ALF 小鼠模型肝脏中的中性粒细胞。因此,HM-ASPH-PF 作为一种在 600 纳米附近具有红移发射的有效发光小分子,已被应用于检测活细胞中的 MPO 和中性粒细胞介导的急性肝损伤。这项工作还证明了发光探针在诊断其他中性粒细胞相关肝病方面的应用潜力。
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引用次数: 0
3D Holo-tomographic Mapping of COVID-19 Microclots in Blood to Assess Disease Severity 绘制血液中 COVID-19 微血栓的三维全息图像以评估疾病严重程度
Pub Date : 2024-01-09 DOI: 10.1021/cbmi.3c00126
Talia Bergaglio, Olena Synhaivska and Peter Niraj Nirmalraj*, 

The coronavirus disease 2019 (COVID-19) has impacted health globally. Cumulative evidence points to long-term effects of COVID-19 such as cardiovascular and cognitive disorders, diagnosed in patients even after the recovery period. In particular, micrometer-sized blood clots and hyperactivated platelets have been identified as potential indicators of long COVID. Here, we resolve microclot structures in the plasma of patients with different subphenotypes of COVID-19 in a label-free manner, using 3D digital holo-tomographic microscopy (DHTM). Based on 3D refractive index (RI) tomograms, the size, dry mass, and prevalence of microclot composites were quantified and then parametrically differentiated from fibrin-rich microclots and platelet aggregates in the plasma of COVID-19 patients. Importantly, fewer microclots and platelet aggregates were detected in the plasma of healthy controls compared to COVID-19 patients. Our imaging and analysis workflow is built around a commercially available DHT microscope capable of operation in clinical settings with a 2 h time period from sample preparation and data acquisition to results.

冠状病毒疾病 2019(COVID-19)对全球健康造成了影响。累积的证据表明,COVID-19 会造成长期影响,如心血管和认知障碍,甚至在患者康复后仍可确诊。特别是,微米大小的血凝块和高活性血小板已被确定为 COVID 长期影响的潜在指标。在这里,我们利用三维数字全图显微镜(DHTM),以无标记的方式解析了 COVID-19 不同亚型患者血浆中的微血凝块结构。根据三维折射率(RI)断层图,对COVID-19患者血浆中的微凝块复合体的大小、干质量和流行率进行了量化,然后从参数上将其与富含纤维蛋白的微凝块和血小板聚集体区分开来。重要的是,与 COVID-19 患者相比,健康对照组血浆中检测到的微凝块和血小板聚集物更少。我们的成像和分析工作流程是围绕市场上可买到的 DHT 显微镜建立的,该显微镜可在临床环境中运行,从样品制备、数据采集到得出结果只需 2 小时。
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引用次数: 0
Excited-State Conjugation/De-Conjugation Driven Nonradiative Thermal Deactivation for Developing Fluorogenic Probes to Diagnose Cancers 激发态共轭/去共轭驱动的非辐射热失活,用于开发诊断癌症的荧光探针
Pub Date : 2024-01-05 DOI: 10.1021/cbmi.3c00107
Hongxing Zhang, Guanlin Lao, Mengxing Liu, Zhihui Jia, Jing Liu* and Wei Guo*, 

Fluorogenic probes have shown great potential in imaging biological species as well as in diagnosing diseases, especially cancers. However, the fluorogenic mechanisms are largely limited to a few photophysical processes to date, typically including photoinduced electron transfer (PeT), fluorescence resonant energy transfer (FRET), and intramolecular charge transfer (ICT). Herein, by calculations and experiments, we set forth that the inhibition of the excited-state π-conjugation in meso-ester Si-rhodamine SiR-COOM or the de-π-conjugation in meso-ester cyanine 5 Cy5-COOM via the “ester-to-carboxylate” conversion can operate as a general fluorogenic mechanism to fabricate fluorogenic probes. Based on the mechanism and considering the higher chemical stability of Cy5-COOM than that of SiR-COOM, we developed, as a proof-of-concept, three fluorogenic probes Cy5-APN, Cy5-GGT, and Cy5-NTR on the basis of the Cy5-COOM platform for sensing cancer biomarkers aminopeptidase N (APN), γ-glutamyltranspeptidase (GGT), and nitroreductase (NTR), respectively, and demonstrated their outstanding performances in distinguishing between cancerous and normal tissues with the high tumor-to-normal tissue ratios in the range of 9–14.

荧光探针在生物物种成像和疾病诊断(尤其是癌症)方面显示出巨大的潜力。然而,迄今为止,致荧光机制主要局限于几个光物理过程,通常包括光诱导电子转移(PeT)、荧光共振能量转移(FRET)和分子内电荷转移(ICT)。在此,我们通过计算和实验提出,抑制介壳Si-罗丹明SiR-COOM中的激发态π-共轭或通过 "酯-羧酸 "转换抑制介壳氰5 Cy5-COOM中的脱π-共轭,可以作为一种通用的致氟机制来制造致氟探针。基于这一机制,并考虑到 Cy5-COOM 比 SiR-COOM 具有更高的化学稳定性,我们在 Cy5-COOM 平台的基础上开发了 Cy5-APN、Cy5-GGT 和 Cy5-NTR 三种荧光探针,作为感测癌症生物标志物氨基肽酶 N(APN)的概念验证、它们在区分癌组织和正常组织方面表现出色,肿瘤与正常组织的比率高达 9-14 倍。
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引用次数: 0
Near-Infrared Fluorescent Probe with pH- and Viscosity-Switchable Performance for the Detection of Thrombi in Live Animals and Organs 具有 pH 值和粘度可调性能的近红外荧光探针,用于检测活体动物和器官中的血栓
Pub Date : 2024-01-03 DOI: 10.1021/cbmi.3c00110
Jinlan Luo, Changyong Song, Yunling Chen and Keyin Liu*, 

Blood viscosity changes and blood clots are high-impact diseases, but the pathogenic mechanisms and detection methods are still limited. Due to the complexity of the cellular microenvironment, viscosity is a key factor in regulating the behavior of mitochondria and lysosomes in cells. Conventional fluorescence probes are highly restrictive for complex viscosity detection in live animals. Therefore, we developed two near-infrared fluorescence probes, QL1 and QL2, with dual responses to the pH and viscosity. Notably, QL2 has two maximum fluorescence emissions at 680 and 750 nm, when excitation by 580 and 700 nm, respectively. QL2 exhibited both a pH and viscosity switchable fluorescence response. The two emission peaks exhibited a reverse change trend: the fluorescence at 680 nm decreased by 90%, and the fluorescence at 750 nm increased by about 5-fold with pH from 2 to 10. Meanwhile, both emission peaks show remarkable fluorescence enhancement toward viscosity change, with 185 and 32 times enhancement, respectively. The sensing mechanism and spectral changes are confirmed by DFT calculations. QL2 was further used for viscosity imaging in live cells, zebrafish, and live animals. Most importantly, QL2 is able to successfully track changes in blood clots in live mice and organs, thus enabling the study of blood clots in cerebral strokes and the underlying pathological mechanisms.

血液粘度变化和血栓是影响较大的疾病,但其致病机制和检测方法仍然有限。由于细胞微环境的复杂性,粘度是调节细胞内线粒体和溶酶体行为的关键因素。传统的荧光探针对活体动物复杂粘度的检测有很大限制。因此,我们开发了两种近红外荧光探针 QL1 和 QL2,它们对 pH 值和粘度具有双重响应。值得注意的是,QL2 在 580 纳米和 700 纳米激发下,分别在 680 纳米和 750 纳米处有两个最大荧光发射。QL2 同时表现出酸碱度和粘度可切换的荧光响应。这两个发射峰呈反向变化趋势:随着 pH 值从 2 到 10 的变化,680 nm 处的荧光减少了 90%,750 nm 处的荧光增加了约 5 倍。同时,随着粘度的变化,两个发射峰的荧光都有显著增强,分别增强了 185 倍和 32 倍。传感机制和光谱变化得到了 DFT 计算的证实。QL2 还被进一步用于活细胞、斑马鱼和活体动物的粘度成像。最重要的是,QL2 能够成功跟踪活体小鼠和器官中血凝块的变化,从而使脑卒中血凝块及其潜在病理机制的研究成为可能。
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引用次数: 0
Enzyme-Instructed CBT-Cys-like Click Cyclization Reactions for Bioimaging 用于生物成像的酶促 CBT-Cys 类单击环化反应
Pub Date : 2023-12-31 DOI: 10.1021/cbmi.3c00117
Yang Yang, Xiaoyang Liu, Xiaofeng Wu* and Gaolin Liang*, 

With high efficiency, mild conditions, and rapid reaction rate, click reactions have garnered much attention in the field of bioimaging since proposed by Sharpless et al. in 2001 ( Angew. Chem., Int. Ed. 2001, 40, 2004−2021). Inspired by the regenerative pathway of d-luciferin in fireflies, Liang et al. ( Nat. Chem. 2010, 2, 54−60) raised a 2-cyanobenzothiazole (CBT)-cysteine (Cys) click condensation reaction in 2010, which exhibits a higher second-order reaction rate (9.19 M–1 s–1) and superior biocompatibility. As it has been developed in the past decade, remarkable progress has been made in the construction of enzyme-instructed CBT-Cys-based bioimaging probes. This review introduces the concept of the CBT-Cys click reaction, elucidates the mechanism of the CBT-Cys click reaction, and concerns the development progress of CBT-Cys reaction and its derived reactions [i.e., 2-cyano-6-hydroxyquinoline (CHQ)-Cys reaction and 2-pyrimidinecarbonitrile (PMN)-Cys reaction]. Furthermore, we give a comprehensive and up-to-date review of enzyme-instructed CBT-Cys-like click reaction-based probes with significantly enhanced imaging signal and contrast for various bioimaging modes, including fluorescence imaging, photoacoustic imaging, magnetic resonance imaging, and positron emission tomography. In the end, we discuss the possible challenges and opportunities that may arise in the future.

自 Sharpless 等人于 2001 年提出点击反应(Angew.)受萤火虫中 d-luciferin 再生途径的启发,Liang 等人 ( Nat. Chem. 2010, 2, 54-60) 于 2010 年提出了 2-氰基苯并噻唑(CBT)-半胱氨酸(Cys)点击缩合反应,该反应具有更高的二阶反应速率(9.19 M-1 s-1)和更好的生物相容性。经过近十年的发展,基于酶指导的 CBT-Cys 生物成像探针的构建取得了显著进展。本综述介绍了 CBT-Cys 点击反应的概念,阐明了 CBT-Cys 点击反应的机理,并关注了 CBT-Cys 反应及其衍生反应[即 2-氰基-6-羟基喹啉(CHQ)-Cys 反应和 2-嘧啶甲腈(PMN)-Cys 反应]的开发进展。此外,我们还全面综述了基于酶指导的 CBT-Cys 类点击反应探针的最新进展,这些探针可显著增强成像信号和对比度,适用于各种生物成像模式,包括荧光成像、光声成像、磁共振成像和正电子发射断层扫描。最后,我们讨论了未来可能出现的挑战和机遇。
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引用次数: 0
Optical Imaging of Single Extracellular Vesicles: Recent Progress and Prospects 单个细胞外囊泡的光学成像:最新进展与前景
Pub Date : 2023-12-15 DOI: 10.1021/cbmi.3c00095
Bochen Ma, Li Li, Yuting Bao, Liang Yuan, Songlin Liu, Liqing Qi, Sihui Tong, Yating Xiao, Lubin Qi, Xiaohong Fang* and Yifei Jiang*, 

Extracellular vesicles (EVs) are small, membrane-bound structures released by various cell types into the extracellular environment, which play a crucial role in intercellular communication and the transfer of biomolecules between cells. Given their functional significance, there are intense research interests to use EVs as disease markers and drug carriers. However, EVs characterization is greatly hindered by the small size, the low biomolecule payload, and the high level of heterogeneity. To address these challenges, researchers have adopted sensitive microscopic methods such as single-molecule fluorescence imaging, single-particle dark-field imaging, surface-enhanced Raman scattering, and surface plasmon resonance imaging for single EV analysis. These techniques can detect signals from individual EVs, enabling a detailed study of the heterogeneity. Analysis of EVs cargo has provided insights into the protein/nucleic acid expression and enabled subgroup differentiation. Superresolution mapping has visualized EVs structures, and single EV tracking has offered insights into their release and uptake mechanisms. In this review, we will summarize the recent advances in optical imaging of single EVs, including the biomarkers used for EV labeling, the performance of the reported microscopic methods, and their biological findings. Finally, we will address the limitations of the existing methods and outline prospects for future development in this field.

细胞外囊泡(EVs)是由各种细胞释放到细胞外环境中的小型膜结合结构,在细胞间通信和细胞间生物分子转移中发挥着至关重要的作用。鉴于 EVs 的重要功能,将其用作疾病标志物和药物载体的研究兴趣十分浓厚。然而,EVs 体积小、生物大分子载量低、异质性强,这些因素极大地阻碍了对其进行表征。为了应对这些挑战,研究人员采用了敏感的显微方法,如单分子荧光成像、单颗粒暗场成像、表面增强拉曼散射和表面等离子体共振成像,来分析单个 EV。这些技术可以检测单个 EV 的信号,从而对其异质性进行详细研究。对 EVs 货物的分析有助于深入了解蛋白质/核酸的表达,并实现亚群分化。超分辨率制图可将EVs结构可视化,单个EVs追踪可深入了解其释放和吸收机制。在这篇综述中,我们将总结单个EV光学成像的最新进展,包括用于EV标记的生物标记物、已报道的显微方法的性能及其生物学发现。最后,我们将讨论现有方法的局限性,并概述该领域的未来发展前景。
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引用次数: 0
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