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IF 2 4区 医学 Q1 Medicine Pub Date : 2023-11-01 DOI: 10.1016/S0939-3889(23)00127-7
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引用次数: 0
Investigation of Monte Carlo simulations of the electron transport in external magnetic fields using Fano cavity test 利用法诺空腔测试对外部磁场中电子传输的蒙特卡罗模拟研究
IF 2 4区 医学 Q1 Medicine Pub Date : 2023-11-01 DOI: 10.1016/j.zemedi.2022.07.002
Mohamad Alissa , Klemens Zink , Damian Czarnecki

Purpose

Monte Carlo simulations are crucial for calculating magnetic field correction factors kB for the dosimetry in external magnetic fields. As in Monte Carlo codes the charged particle transport is performed in straight condensed history (CH) steps, the curved trajectories of these particles in the presence of external magnetic fields can only be approximated. In this study, the charged particle transport in presence of a strong magnetic field B was investigated using the Fano cavity test. The test was performed in an ionization chamber and a diode detector, showing how the step size restrictions must be adjusted to perform a consistent charged particle transport within all geometrical regions.

Methods

Monte Carlo simulations of the charged particle transport in a magnetic field of 1.5 T were performed using the EGSnrc code system including an additional EMF-macro for the transport of charged particle in electro-magnetic fields. Detailed models of an ionization chamber and a diode detector were placed in a water phantom and irradiated with a so called Fano source, which is a monoenergetic, isotropic electron source, where the number of emitted particles is proportional to the local density.

Results

The results of the Fano cavity test strongly depend on the energy of charged particles and the density within the given geometry. By adjusting the maximal length of the charged particle steps, it was possible to calculate the deposited dose in the investigated regions with high accuracy (<0.1%). The Fano cavity test was performed in all regions of the detailed detector models. Using the default value for the step size in the external magnetic field, the maximal deviation between Monte Carlo based and analytical dose value in the sensitive volume of the ion chamber and diode detector was 8% and 0.1%, respectively.

Conclusions

The Fano cavity test is a crucial validation method for the modeled detectors and the transport algorithms when performing Monte Carlo simulations in a strong external magnetic field. Special care should be given, when calculating dose in volumes of low density. This study has shown that the Fano cavity test is a useful method to adapt particle transport parameters for a given simulation geometry.

目的 蒙特卡罗模拟对于计算外磁场剂量测定的磁场校正因子 kB 至关重要。由于在蒙特卡罗代码中,带电粒子的传输是以直线凝聚历史(CH)步骤进行的,因此这些粒子在外部磁场中的弯曲轨迹只能近似计算。在本研究中,我们使用法诺空腔试验研究了带电粒子在强磁场 B→ 存在下的传输。该测试在电离室和二极管探测器中进行,显示了必须如何调整步长限制才能在所有几何区域内实现一致的带电粒子输运。方法使用 EGSnrc 代码系统对带电粒子在 1.5 T 磁场中的输运进行了蒙特卡罗模拟,该系统包括用于带电粒子在电磁场中输运的附加电磁场宏。电离室和二极管探测器的详细模型被放置在水模型中,并用所谓的法诺源进行照射,法诺源是一种单能量、各向同性的电子源,其发射粒子的数量与局部密度成正比。通过调整带电粒子步骤的最大长度,可以高精度(<0.1%)计算所研究区域的沉积剂量。在详细探测器模型的所有区域都进行了法诺空腔测试。使用外磁场中步长的默认值,在离子室和二极管探测器的敏感区域,基于蒙特卡罗的剂量值与分析值之间的最大偏差分别为 8%和 0.1%。在计算低密度体积的剂量时应特别注意。这项研究表明,法诺空腔试验是一种有用的方法,可以根据给定的模拟几何形状调整粒子传输参数。
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引用次数: 2
DNA damage by radiation as a function of electron energy and interaction at the atomic level with Monte Carlo simulation 辐射对 DNA 的损伤是电子能量和原子级相互作用的函数,并进行蒙特卡罗模拟
IF 2 4区 医学 Q1 Medicine Pub Date : 2023-11-01 DOI: 10.1016/j.zemedi.2022.07.003
Youssef Lamghari, Huizhong Lu, M'hamed Bentourkia

In radiotherapy, X-ray or heavy ion beams target tumors to cause damage to their cell DNA. This damage is mainly induced by secondary low energy electrons. In this paper, we report the DNA molecular breaks at the atomic level as a function of electron energy and types of electron interactions using of Monte Carlo simulation. The number of DNA single and double strand breaks are compared to those from experimental results based on electron energies. In recent years, DNA atomistic models were introduced but still the simulations consider energy deposition in volumes of DNA or water equivalent material. We simulated a model of atomistic B-DNA in vacuum, forming 1122 base pairs of 30 nm in length. Each atom has been represented by a sphere whose radius equals the radius of van der Waals. We repeatedly simulated 10 million electrons for each energy from 4 eV to 500 eV and counted each interaction type with its position x, y, z in the volume of DNA. Based on the number and types of interactions at the atomic level, the number of DNA single and double strand breaks were calculated. We found that the dissociative electron attachment has the dominant effect on DNA strand breaks at energies below 10 eV compared to excitation and ionization. In addition, it is straightforward with our simulation to discriminate the strand and base breaks as a function of radiation interaction type and energy. In conclusion, the knowledge of DNA damage at the atomic level helps design direct internal therapeutic agents of cancer treatment.

在放射治疗中,X 射线或重离子束以肿瘤为目标,对其细胞 DNA 造成损伤。这种损伤主要是由次级低能量电子引起的。在本文中,我们利用蒙特卡洛模拟报告了DNA分子断裂在原子水平上与电子能量和电子相互作用类型的函数关系。DNA单链和双链断裂的数量与基于电子能量的实验结果进行了比较。近年来,DNA 原子模型被引入,但模拟仍然考虑 DNA 或水等效材料体积中的能量沉积。我们模拟了真空中的 B-DNA 原子模型,该模型由 1122 个长度为 30 纳米的碱基对组成。每个原子都由一个半径等于范德华半径的球体表示。我们反复模拟了从 4 eV 到 500 eV 的每种能量下的 1000 万个电子,并统计了每种相互作用类型及其在 DNA 体积中的 x、y、z 位置。根据原子水平上相互作用的数量和类型,计算出 DNA 单链和双链断裂的数量。我们发现,在能量低于 10 eV 时,与激发和电离相比,解离电子附着对 DNA 链断裂的影响最大。此外,根据辐射相互作用类型和能量的函数,我们的模拟可以直接区分链断裂和碱基断裂。总之,原子水平的 DNA 损伤知识有助于设计治疗癌症的直接内部治疗剂。
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引用次数: 0
Generation, validation, and benchmarking of a commercial independent Monte Carlo calculation beam model for multi-target SRS. 多目标SRS的商业独立蒙特卡罗计算光束模型的生成、验证和基准测试。
IF 2 4区 医学 Q1 Medicine Pub Date : 2023-09-07 DOI: 10.1016/j.zemedi.2023.08.004
Justus Adamson, Brett G Erickson, Chunhao Wang, Yunfeng Cui, Markus Alber, John Kirkpatrick, Fang-Fang Yin

Background: Dosimetric validation of single isocenter multi-target radiosurgery plans is difficult due to conditions of electronic disequilibrium and the simultaneous irradiation of multiple off-axis lesions dispersed throughout the volume. Here we report the benchmarking of a customizable Monte Carlo secondary dose calculation algorithm specific for multi-target radiosurgery which future users may use to guide their commissioning and clinical implementation.

Purpose: To report the generation, validation, and clinical benchmarking of a volumetric Monte Carlo (MC) dose calculation beam model for single isocenter radiosurgery of intracranial multi-focal disease.

Methods: The beam model was prepared within SciMoCa (ScientificRT, Munich Germany), a commercial independent dose calculation software, with the aim of broad availability via the commercial software for use with single isocenter radiosurgery. The process included (1) definition & acquisition of measurement data required for beam modeling, (2) tuning model parameters to match measurements, (3) validation of the beam model via independent measurements and end-to-end testing, and finally, (4) clinical benchmarking and validation of beam model utility in a patient specific QA setting. We utilized a 6X Flattening-Filter-Free photon beam from a TrueBeam STX linear accelerator (Siemens Healthineers, Munich Germany).

Results: In addition to the measured data required for standard IMRT/VMAT (depth dose, central axis profiles & output factors, leaf gap), beam modeling and validation for single-isocenter SRS required central axis and off axis (5 cm & 9 cm) small field output factors and comparison between measurement and simulation of backscatter with aperture for jaw much greater than MLCs. Validation end-to-end measurements included SRS MapCHECK in StereoPHAN geometry (2%/1 mm Gamma = 99.2% ± 2.2%), and OSL & scintillator measurements in anthropomorphic STEEV phantom (6 targets, volume = 0.1-4.1cc, distance from isocenter = 1.2-7.9 cm) for which mean difference was -1.9% ± 2.2%. For 10 patient cases, MC for individual PTVs was -0.8% ± 1.5%, -1.3% ± 1.7%, and -0.5% ± 1.8% for mean dose, D95%, and D1%, respectively. This corresponded to custom passing rates action limits per AAPM TG-218 guidelines of ±5.2%, ±6.4%, and ±6.3%, respectively.

Conclusions: The beam modeling, validation, and clinical action criteria outlined here serves as a benchmark for future users of the customized beam model within SciMoCa for single isocenter radiosurgery of multi-focal disease.

背景:由于电子不平衡和分散在整个体积内的多个离轴病变同时照射的条件,单个等中心多靶点放射手术计划的剂量学验证是困难的。在这里,我们报告了针对多靶点放射手术的可定制蒙特卡罗二次剂量计算算法的基准测试,未来的用户可以使用该算法来指导他们的调试和临床实施。目的:报道用于颅内多灶性疾病单中心放射手术的体积蒙特卡罗(MC)剂量计算束模型的生成、验证和临床基准。方法:在商业独立剂量计算软件SciMoCa (ScientificRT, Munich Germany)中制备光束模型,目的是通过商业软件广泛应用于单等中心放射手术。该过程包括(1)定义和获取光束建模所需的测量数据,(2)调整模型参数以匹配测量结果,(3)通过独立测量和端到端测试验证光束模型,最后,(4)临床基准测试和验证光束模型在患者特定QA设置中的实用性。我们使用了来自TrueBeam STX线性加速器(Siemens Healthineers, Munich Germany)的6倍无平坦滤波光子束。结果:除了标准IMRT/VMAT所需的测量数据(深度剂量、中心轴轮廓和输出因子、叶片间隙)外,单等中心SRS的光束建模和验证还需要中心轴和离轴(5 cm和9 cm)小场输出因子,以及下颌孔径远大于MLCs的后向散射的测量和模拟比较。验证端到端测量包括SRS MapCHECK StereoPHAN几何(2% / 1 mm伽马 = 99.2% ± 2.2%),和OSL &闪烁体测量拟人化STEEV幻影(6个目标,体积 = 0.1 - -4.1 cc,距离等深点 = 1.2 -7.9 厘米)的平均差 -1.9%± 2.2%。10例患者的平均剂量MC分别为-0.8% ± 1.5%,-1.3% ± 1.7%和-0.5% ± 1.8%,D95%和D1%。这与AAPM TG-218指南规定的自定义合格率行动限制分别为±5.2%,±6.4%和±6.3%相对应。结论:本文概述的光束建模、验证和临床作用标准可作为未来使用SciMoCa内定制光束模型进行多病灶单中心放射手术的基准。
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引用次数: 0
Assessment of resolution and noise in magnetic resonance images reconstructed by data driven approaches. 用数据驱动方法重建磁共振图像的分辨率和噪声评估。
IF 2 4区 医学 Q1 Medicine Pub Date : 2023-09-06 DOI: 10.1016/j.zemedi.2023.08.007
Jonas Kleineisel, Katja Lauer, Alfio Borzì, Thorsten A Bley, Herbert Köstler, Tobias Wech

Introduction: Deep learning-based approaches are increasingly being used for the reconstruction of accelerated MRI scans. However, presented analyses are frequently lacking in-detail evaluation of basal measures like resolution or signal-to-noise ratio. To help closing this gap, spatially resolved maps of image resolution and noise enhancement (g-factor) are determined and assessed for typical model- and data-driven MR reconstruction methods in this paper.

Methods: MR data from a routine brain scan of a patient were undersampled in retrospect at R = 4 and reconstructed using two data-driven (variational network (VN), U-Net) and two model based reconstructions methods (GRAPPA, TV-constrained compressed sensing). Local resolution was estimated by the width of the main-lobe of a local point-spread function, which was determined for every single pixel by reconstructing images with an additional small perturbation. G-factor maps were determined using a multiple replica method.

Results: GRAPPA showed good spatial resolution, but increased g-factors (1.43-1.84, 75% quartile) over all other methods. The images delivered from compressed sensing suffered most from low local resolution, in particular in homogeneous areas of the image. VN and U-Net show similar resolution with mostly moderate local blurring, slightly better for U-Net. For all methods except GRAPPA the resolution as well as the g-factors depend on the anatomy and the direction of undersampling.

Conclusion: Objective image quality parameters, local resolution and g-factors have been determined. The examined data driven methods show less local blurring than compressed sensing. The noise enhancement for reconstructions using CS, VN and U-Net is elevated at anatomical contours but is drastically reduced with respect to GRAPPA. Overall, the applied framework provides the possibility for more detailed analysis of novel reconstruction approaches incorporating non-linear and non-stationary transformations.

基于深度学习的方法越来越多地被用于加速MRI扫描的重建。然而,目前的分析往往缺乏对分辨率或信噪比等基本指标的详细评估。为了帮助缩小这一差距,本文确定并评估了典型模型和数据驱动的MR重建方法的图像分辨率和噪声增强(g因子)的空间分辨图。方法:对1例患者常规脑部扫描的MR数据在R = 4处进行欠采样,并使用两种数据驱动(变分网络(VN)、U-Net)和两种基于模型的重建方法(GRAPPA、电视约束压缩感知)进行重建。局部分辨率是通过局部点扩散函数的主瓣宽度来估计的,该主瓣宽度是通过附加小扰动重建图像来确定的。使用多重复制方法确定g因子图。结果:GRAPPA具有良好的空间分辨率,但g因子(1.43 ~ 1.84,75%四分位数)高于其他方法。压缩感知传递的图像最容易受到低局部分辨率的影响,特别是在图像的均匀区域。VN和U-Net显示出相似的分辨率,大多是适度的局部模糊,U-Net稍微好一点。对于除GRAPPA外的所有方法,分辨率和g因子取决于解剖结构和欠采样方向。结论:确定了客观图像质量参数、局部分辨率和g因子。所研究的数据驱动方法比压缩感知显示更少的局部模糊。使用CS, VN和U-Net重建的噪声增强在解剖轮廓处升高,但相对于GRAPPA则大大降低。总的来说,应用框架为更详细地分析包含非线性和非平稳变换的新型重建方法提供了可能性。
{"title":"Assessment of resolution and noise in magnetic resonance images reconstructed by data driven approaches.","authors":"Jonas Kleineisel,&nbsp;Katja Lauer,&nbsp;Alfio Borzì,&nbsp;Thorsten A Bley,&nbsp;Herbert Köstler,&nbsp;Tobias Wech","doi":"10.1016/j.zemedi.2023.08.007","DOIUrl":"https://doi.org/10.1016/j.zemedi.2023.08.007","url":null,"abstract":"<p><strong>Introduction: </strong>Deep learning-based approaches are increasingly being used for the reconstruction of accelerated MRI scans. However, presented analyses are frequently lacking in-detail evaluation of basal measures like resolution or signal-to-noise ratio. To help closing this gap, spatially resolved maps of image resolution and noise enhancement (g-factor) are determined and assessed for typical model- and data-driven MR reconstruction methods in this paper.</p><p><strong>Methods: </strong>MR data from a routine brain scan of a patient were undersampled in retrospect at R = 4 and reconstructed using two data-driven (variational network (VN), U-Net) and two model based reconstructions methods (GRAPPA, TV-constrained compressed sensing). Local resolution was estimated by the width of the main-lobe of a local point-spread function, which was determined for every single pixel by reconstructing images with an additional small perturbation. G-factor maps were determined using a multiple replica method.</p><p><strong>Results: </strong>GRAPPA showed good spatial resolution, but increased g-factors (1.43-1.84, 75% quartile) over all other methods. The images delivered from compressed sensing suffered most from low local resolution, in particular in homogeneous areas of the image. VN and U-Net show similar resolution with mostly moderate local blurring, slightly better for U-Net. For all methods except GRAPPA the resolution as well as the g-factors depend on the anatomy and the direction of undersampling.</p><p><strong>Conclusion: </strong>Objective image quality parameters, local resolution and g-factors have been determined. The examined data driven methods show less local blurring than compressed sensing. The noise enhancement for reconstructions using CS, VN and U-Net is elevated at anatomical contours but is drastically reduced with respect to GRAPPA. Overall, the applied framework provides the possibility for more detailed analysis of novel reconstruction approaches incorporating non-linear and non-stationary transformations.</p>","PeriodicalId":54397,"journal":{"name":"Zeitschrift fur Medizinische Physik","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10243559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Compartment-specific 129Xe HyperCEST z spectroscopy and chemical shift imaging of cucurbit[6]uril in spontaneously breathing rats. 自主呼吸大鼠葫芦[6]尿的室特异性129Xe HyperCEST z光谱和化学位移成像。
IF 2 4区 医学 Q1 Medicine Pub Date : 2023-09-01 DOI: 10.1016/j.zemedi.2023.08.005
Agilo Luitger Kern, Marcel Gutberlet, Regina Rumpel, Inga Bruesch, Jens M Hohlfeld, Frank Wacker, Bennet Hensen

129Xe hyperpolarized gas chemical exchange saturation transfer (HyperCEST) MRI has been suggested as molecular imaging modality but translation to in vivo imaging has been slow, likely due to difficulties of synthesizing suitable molecules. Cucurbit[6]uril-either in readily available non-functionalized or potentially in functionalized form-may, combined with 129Xe HyperCEST MRI, prove useful as a switchable 129Xe MR contrast agent but the likely differential properties of contrast generation in individual chemical compartments as well as the influence of 129Xe signal drifts encountered in vivo on HyperCEST MRI are unknown. Here, HyperCEST z spectroscopy and chemical shift imaging with compartment-specific analysis are performed in a total of 10 rats using cucurbit[6]uril injected i.v. and under a protocol employing spontaneous respiration. Differences in intensity of the HyperCEST effect between chemical compartments and anatomical regions are investigated. Strategies to mitigate influence of signal instabilities associated with drifts in physiological parameters are developed. It is shown that presence of cucurbit[6]uril can be readily detected under spontaneous 129Xe inhalation mostly in aqueous tissues further away from the lung. Differences of effect intensity in individual regions and compartments must be considered in HyperCEST data interpretation. In particular, there seems to be almost no effect in lipids. 129Xe HyperCEST MR measurements utilizing spontaneous respiration protocols and extended measurement times are feasible. HyperCEST MRI of non-functionalized cucurbit[6]uril may create contrast between anatomical structures in vivo.

129Xe超极化气体化学交换饱和转移(HyperCEST) MRI已被建议作为分子成像方式,但转化为体内成像一直很慢,可能是由于难以合成合适的分子。瓜[6]脲——无论是现成的非功能化形式还是潜在的功能化形式——可能与129Xe HyperCEST MRI结合,被证明是一种可切换的129Xe MR造影剂,但不同化学室造影剂产生的差异特性以及体内遇到的129Xe信号漂移对HyperCEST MRI的影响尚不清楚。在本研究中,在采用自发呼吸的方案下,对10只大鼠进行了HyperCEST z光谱和化学位移成像,并进行了室特异性分析。研究了化学区室和解剖区域之间HyperCEST效应强度的差异。开发了减轻与生理参数漂移相关的信号不稳定性影响的策略。研究表明,在自发吸入129Xe(主要是在远离肺的水组织中)的情况下,很容易检测到葫芦[6]脲的存在。在解释HyperCEST数据时,必须考虑各个区域和隔间的效应强度差异。特别是,对脂质似乎几乎没有影响。129Xe HyperCEST磁共振测量利用自发呼吸协议和延长的测量时间是可行的。非功能化葫芦[6]的超超磁共振成像可以在体内形成解剖结构的对比。
{"title":"Compartment-specific <sup>129</sup>Xe HyperCEST z spectroscopy and chemical shift imaging of cucurbit[6]uril in spontaneously breathing rats.","authors":"Agilo Luitger Kern,&nbsp;Marcel Gutberlet,&nbsp;Regina Rumpel,&nbsp;Inga Bruesch,&nbsp;Jens M Hohlfeld,&nbsp;Frank Wacker,&nbsp;Bennet Hensen","doi":"10.1016/j.zemedi.2023.08.005","DOIUrl":"https://doi.org/10.1016/j.zemedi.2023.08.005","url":null,"abstract":"<p><p><sup>129</sup>Xe hyperpolarized gas chemical exchange saturation transfer (HyperCEST) MRI has been suggested as molecular imaging modality but translation to in vivo imaging has been slow, likely due to difficulties of synthesizing suitable molecules. Cucurbit[6]uril-either in readily available non-functionalized or potentially in functionalized form-may, combined with <sup>129</sup>Xe HyperCEST MRI, prove useful as a switchable <sup>129</sup>Xe MR contrast agent but the likely differential properties of contrast generation in individual chemical compartments as well as the influence of <sup>129</sup>Xe signal drifts encountered in vivo on HyperCEST MRI are unknown. Here, HyperCEST z spectroscopy and chemical shift imaging with compartment-specific analysis are performed in a total of 10 rats using cucurbit[6]uril injected i.v. and under a protocol employing spontaneous respiration. Differences in intensity of the HyperCEST effect between chemical compartments and anatomical regions are investigated. Strategies to mitigate influence of signal instabilities associated with drifts in physiological parameters are developed. It is shown that presence of cucurbit[6]uril can be readily detected under spontaneous <sup>129</sup>Xe inhalation mostly in aqueous tissues further away from the lung. Differences of effect intensity in individual regions and compartments must be considered in HyperCEST data interpretation. In particular, there seems to be almost no effect in lipids. <sup>129</sup>Xe HyperCEST MR measurements utilizing spontaneous respiration protocols and extended measurement times are feasible. HyperCEST MRI of non-functionalized cucurbit[6]uril may create contrast between anatomical structures in vivo.</p>","PeriodicalId":54397,"journal":{"name":"Zeitschrift fur Medizinische Physik","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10136802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Radiation-induced double-strand breaks by internal ex vivo irradiation of lymphocytes: Validation of a Monte Carlo simulation model using GATE and Geant4-DNA. 淋巴细胞体内外照射引起的辐射诱导双链断裂:使用GATE和Geant4-DNA的蒙特卡罗模拟模型的验证
IF 2 4区 医学 Q1 Medicine Pub Date : 2023-08-18 DOI: 10.1016/j.zemedi.2023.07.007
Maikol Salas-Ramirez, Lydia Maigne, Giovanna Fois, Harry Scherthan, Michael Lassmann, Uta Eberlein

This study describes a method to validate a radiation transport model that quantifies the number of DNA double-strand breaks (DSB) produced in the lymphocyte nucleus by internal ex vivo irradiation of whole blood with the radionuclides 90Y, 99mTc, 123I, 131I, 177Lu, 223Ra, and 225Ac in a test vial using the GATE/Geant4 code at the macroscopic level and the Geant4-DNA code at the microscopic level.

Methods: The simulation at the macroscopic level reproduces an 8 mL cylindrical water-equivalent medium contained in a vial that mimics the geometry for internal ex vivo blood irradiation. The lymphocytes were simulated as spheres of 3.75 µm radius randomly distributed, with a concentration of 125 spheres/mL. A phase-space actor was attached to each sphere to register all the entering particles. The simulation at the microscopic level for each radionuclide was performed using the Geant4-DNA tool kit, which includes the clustering example centered on a density-based spatial clustering of applications with noise (DBSCAN) algorithm. The irradiation source was constructed by generating a single phase space from the sum of all phase spaces. The lymphocyte nucleus was defined as a water sphere of a 3.1 µm radius. The absorbed dose coefficients for lymphocyte nuclei (dLymph) were calculated and compared with macroscopic whole blood absorbed dose coefficients (dBlood). The DBSCAN algorithm was used to calculate the number of DSBs. Lastly, the number of DSB∙cell-1∙mGy-1 (simulation) was compared with the number of radiation-induced foci per cell and absorbed dose (RIF∙cell-1∙mGy-1) provided by experimental data for gamma and beta emitting radionuclides. For alpha emitters, dLymph and the number of α-tracks∙100 cell-1∙mGy-1 and DBSs∙µm-1 were calculated using experiment-based thresholds for the α-track lengths and DBSs/track values. The results were compared with the results of an ex vivo study with 223Ra.

Results: The dLymph values differed from the dBlood values by -1.0% (90Y), -5.2% (99mTc), -22.3% (123I), 0.35% (131I), 2.4% (177Lu), -5.6% (223Ra) and -6.1% (225Ac). The number of DSB∙cell-1∙mGy-1 for each radionuclide was 0.015 DSB∙cell-1∙mGy-1 (90Y), 0.012 DSB∙cell-1∙mGy-1 (99mTc), 0.014DSB∙cell-1∙mGy-1 (123I), 0.012 DSB∙cell-1∙mGy-1 (131I), and 0.016 DSB∙cell-1∙mGy-1 (177Lu). These values agree very well with experimental data. The number of α-tracks∙100 cells-1∙mGy-1 for 223Ra and 225Ac w

本研究描述了一种验证辐射传输模型的方法,该模型通过在测试瓶中使用GATE/Geant4编码宏观水平和Geant4-DNA编码,用放射性核素90Y、99mTc、123I、131I、177Lu、223Ra和225Ac对全血进行体外照射,量化淋巴细胞核中产生的DNA双链断裂(DSB)的数量。方法:在宏观水平上模拟了一个8 mL的圆柱形水当量介质,该介质装在一个小瓶中,模拟了体内离体血液辐照的几何形状。将淋巴细胞模拟成半径为3.75 µm的球体,随机分布,浓度为125 球/mL。在每个球体上附加一个相空间actor来记录所有进入的粒子。使用Geant4-DNA工具包对每种放射性核素进行微观水平的模拟,其中包括以基于密度的空间聚类应用噪声(DBSCAN)算法为中心的聚类示例。辐照源是由所有相空间的和生成一个单相空间构成的。淋巴细胞核定义为3.1 µm半径的水球。计算淋巴细胞核吸收剂量系数(dLymph),并与宏观全血吸收剂量系数(dBlood)进行比较。采用DBSCAN算法计算dsb个数。最后,将DSB∙cell-1∙mGy-1(模拟)的数量与γ和β释放放射性核素实验数据提供的每个细胞的辐射诱导焦点数量和吸收剂量(RIF∙cell-1∙mGy-1)进行比较。对于alpha发射器,采用α-径迹长度和dbs /径迹值的实验阈值计算dLymph和α-径迹∙100 cells -1∙mGy-1和dbs∙µm-1。结果与223Ra的离体研究结果进行了比较。结果:dLymph值与dBlood值的差异分别为-1.0% (90Y)、-5.2% (99mTc)、-22.3% (123I)、0.35% (131I)、2.4% (177Lu)、-5.6% (223Ra)和-6.1% (225Ac)。每种放射性核素的DSB∙cell-1∙mGy-1的数量分别为0.015 DSB∙cell-1∙mGy-1 (90Y)、0.012 DSB∙cell-1∙mGy-1 (99mTc)、0.014DSB∙cell-1∙mGy-1 (123I)、0.012 DSB∙cell-1∙mGy-1 (131I)和0.016 DSB∙cell-1∙mGy-1 (177Lu)。这些数值与实验数据吻合得很好。223Ra和225Ac的α-tracks∙100 cells-1∙mGy-1的数量分别为0.144个α-tracks∙100 cells-1∙mGy-1和0.151个α-tracks∙100 cells-1∙mGy-1。这些数值与实验数据吻合得很好。在223Ra和225Ac条件下,每微米α-径长DSB的线密度分别为11.13 ± 0.04 DSB/µm和10.86 ± 0.06 DSB/µm。结论:本研究建立了一种模拟淋巴细胞核DNA DSB损伤的模型,并通过核医学诊断和治疗过程中常用的放射性核素对体内血液照射的实验数据进行了验证。
{"title":"Radiation-induced double-strand breaks by internal ex vivo irradiation of lymphocytes: Validation of a Monte Carlo simulation model using GATE and Geant4-DNA.","authors":"Maikol Salas-Ramirez,&nbsp;Lydia Maigne,&nbsp;Giovanna Fois,&nbsp;Harry Scherthan,&nbsp;Michael Lassmann,&nbsp;Uta Eberlein","doi":"10.1016/j.zemedi.2023.07.007","DOIUrl":"https://doi.org/10.1016/j.zemedi.2023.07.007","url":null,"abstract":"<p><p>This study describes a method to validate a radiation transport model that quantifies the number of DNA double-strand breaks (DSB) produced in the lymphocyte nucleus by internal ex vivo irradiation of whole blood with the radionuclides <sup>90</sup>Y, <sup>99m</sup>Tc, <sup>123</sup>I, <sup>131</sup>I, <sup>177</sup>Lu, <sup>223</sup>Ra, and <sup>225</sup>Ac in a test vial using the GATE/Geant4 code at the macroscopic level and the Geant4-DNA code at the microscopic level.</p><p><strong>Methods: </strong>The simulation at the macroscopic level reproduces an 8 mL cylindrical water-equivalent medium contained in a vial that mimics the geometry for internal ex vivo blood irradiation. The lymphocytes were simulated as spheres of 3.75 µm radius randomly distributed, with a concentration of 125 spheres/mL. A phase-space actor was attached to each sphere to register all the entering particles. The simulation at the microscopic level for each radionuclide was performed using the Geant4-DNA tool kit, which includes the clustering example centered on a density-based spatial clustering of applications with noise (DBSCAN) algorithm. The irradiation source was constructed by generating a single phase space from the sum of all phase spaces. The lymphocyte nucleus was defined as a water sphere of a 3.1 µm radius. The absorbed dose coefficients for lymphocyte nuclei (d<sub>Lymph</sub>) were calculated and compared with macroscopic whole blood absorbed dose coefficients (d<sub>Blood</sub>). The DBSCAN algorithm was used to calculate the number of DSBs. Lastly, the number of DSB∙cell<sup>-1</sup>∙mGy<sup>-1</sup> (simulation) was compared with the number of radiation-induced foci per cell and absorbed dose (RIF∙cell<sup>-1</sup>∙mGy<sup>-1</sup>) provided by experimental data for gamma and beta emitting radionuclides. For alpha emitters, d<sub>Lymph</sub> and the number of α-tracks∙100 cell<sup>-1</sup>∙mGy<sup>-1</sup> and DBSs∙µm<sup>-1</sup> were calculated using experiment-based thresholds for the α-track lengths and DBSs/track values. The results were compared with the results of an ex vivo study with <sup>223</sup>Ra.</p><p><strong>Results: </strong>The d<sub>Lymph</sub> values differed from the d<sub>Blood</sub> values by -1.0% (<sup>90</sup>Y), -5.2% (<sup>99m</sup>Tc), -22.3% (<sup>123</sup>I), 0.35% (<sup>131</sup>I), 2.4% (<sup>177</sup>Lu), -5.6% (<sup>223</sup>Ra) and -6.1% (<sup>225</sup>Ac). The number of DSB∙cell<sup>-1</sup>∙mGy<sup>-1</sup> for each radionuclide was 0.015 DSB∙cell<sup>-1</sup>∙mGy<sup>-1</sup> (<sup>90</sup>Y), 0.012 DSB∙cell<sup>-1</sup>∙mGy<sup>-1</sup> (<sup>99m</sup>Tc), 0.014DSB∙cell<sup>-1</sup>∙mGy<sup>-1</sup> (<sup>123</sup>I), 0.012 DSB∙cell<sup>-1</sup>∙mGy<sup>-1</sup> (<sup>131</sup>I), and 0.016 DSB∙cell<sup>-1</sup>∙mGy<sup>-1</sup> (<sup>177</sup>Lu). These values agree very well with experimental data. The number of α-tracks∙100 cells<sup>-1</sup>∙mGy<sup>-1</sup> for <sup>223</sup>Ra and <sup>225</sup>Ac w","PeriodicalId":54397,"journal":{"name":"Zeitschrift fur Medizinische Physik","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-08-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10088978","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gamma radiation detector selection for CT scanner. CT扫描仪伽玛辐射探测器的选择。
IF 2 4区 医学 Q1 Medicine Pub Date : 2023-08-14 DOI: 10.1016/j.zemedi.2023.07.006
Kajal Kumari, Mayank Goswami

Three types of gamma radiation detectors associated with distributed electronics namely, NaI (Tl), HPGe and LaBr3(Ce) are compared primarily focusing on electronic noise and scattering noise. Additionally, detectors of same make, material, size and electronics are also compared. A methodology is proposed to select the most suitable detector for computed tomography (CT) among the available options. Standard deviation parameter is employed to estimate electronic noise without performing CT experiment. Kanpur theorem-1(KT-1) is used to estimate the scattering noise quantitatively after verifying its sensitivity to scattering noise. The impact of scattering noise on CT profiles is evaluated using dice similarity dice coefficient. A good resemblance between KT-1 and dice coefficient is observed. A maximum difference of 56% in scattering noise is observed when five detectors used simultaneously instead of single detector whereas a discrepancy of 85% is observed between different types of radiation detectors. As far as ease of handling, operational and capital cost is concern one has to compromise minimum 12% of accuracy in CT reconstruction if NaI (Tl) detector is used with respect to best alternative available. The proposed methodology can be applied to measurement that require minimal scattering interference data other than CT experiments. The manufacturer can add noise level of detector as a characteristic parameter in the data sheet.

比较了三种与分布式电子学相关的伽马辐射探测器,即NaI (Tl)、HPGe和LaBr3(Ce),主要关注电子噪声和散射噪声。此外,还对相同制造、材料、尺寸和电子器件的探测器进行了比较。提出了一种方法,以选择最合适的检测器的计算机断层扫描(CT)中可用的选项。在不进行CT实验的情况下,采用标准差参数估计电子噪声。在验证了Kanpur定理1(KT-1)对散射噪声的敏感性后,利用Kanpur定理1对散射噪声进行了定量估计。利用骰子相似系数评价了散射噪声对CT轮廓的影响。观察到KT-1和骰子系数之间有很好的相似性。同时使用5个探测器而不是单个探测器时,散射噪声的最大差异为56%,而不同类型的辐射探测器之间的差异为85%。考虑到操作、操作和资金成本,如果使用NaI (Tl)检测器作为最佳替代方案,则必须在CT重建中牺牲至少12%的准确性。该方法可应用于CT实验以外的散射干扰最小的测量。制造商可以在数据表中添加探测器的噪声级作为特征参数。
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引用次数: 0
Comparison of different neurite density metrics with brain asymmetry evaluation. 不同神经突密度指标与脑不对称评价的比较。
IF 2 4区 医学 Q1 Medicine Pub Date : 2023-08-07 DOI: 10.1016/j.zemedi.2023.07.003
Ivan I Maximov, Lars T Westlye

The standard diffusion MRI model with intra- and extra-axonal water pools offers a set of microstructural parameters describing brain white matter architecture. However, non-linearities in the standard model and diffusion data contamination by noise and imaging artefacts make estimation of diffusion metrics challenging. In order to develop reliable diffusion approaches and to avoid computational model degeneracy, additional theoretical assumptions allowing stable numerical implementations are required. Advanced diffusion approaches allow for estimation of intra-axonal water fraction (AWF), describing a key structural characteristic of brain tissue. AWF can be interpreted as an indirect measure or proxy of neurite density and has a potential as useful clinical biomarker. Established diffusion approaches such as white matter tract integrity, neurite orientation dispersion and density imaging (NODDI), and spherical mean technique provide estimates of AWF within their respective theoretical frameworks. In the present study, we estimated AWF metrics using different diffusion approaches and compared measures of brain asymmetry between the different metrics in a sub-sample of 182 subjects from the UK Biobank. Multivariate decomposition by mean of linked independent component analysis revealed that the various AWF proxies derived from the different diffusion approaches reflect partly non-overlapping variance of independent components, with distinct anatomical distributions and sensitivity to age. Further, voxel-wise analysis revealed age-related differences in AWF-based brain asymmetry, indicating less apparent left-right hemisphere difference with higher age. Finally, we demonstrated that NODDI metrics suffer from a quite strong dependence on used numerical algorithms and post-processing pipeline. The analysis based on AWF metrics strongly depends on the used diffusion approach and leads to poorly reproducible results.

具有轴突内和轴突外水池的标准弥散MRI模型提供了一组描述脑白质结构的微结构参数。然而,标准模型中的非线性和受噪声和成像伪影污染的扩散数据使得扩散度量的估计具有挑战性。为了开发可靠的扩散方法并避免计算模型退化,需要允许稳定数值实现的附加理论假设。先进的扩散方法允许估计轴突内水分数(AWF),描述脑组织的关键结构特征。AWF可以被解释为神经突密度的间接测量或代理,具有潜在的有用的临床生物标志物。已建立的扩散方法,如白质束完整性、神经突取向弥散和密度成像(NODDI)和球面平均技术,在各自的理论框架内提供了AWF的估计。在本研究中,我们使用不同的扩散方法估计了AWF指标,并比较了来自英国生物银行的182名受试者的不同指标之间的大脑不对称测量。通过关联独立分量分析进行多元分解,发现不同扩散方法得到的AWF指标部分反映了独立分量的非重叠方差,具有不同的解剖分布和对年龄的敏感性。此外,体素分析揭示了基于awf的大脑不对称性的年龄相关差异,表明年龄越大,左右半球差异越不明显。最后,我们证明了NODDI指标非常依赖于所使用的数值算法和后处理管道。基于AWF指标的分析强烈依赖于所使用的扩散方法,导致结果的可重复性很差。
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引用次数: 1
Quantification of regional CMRO2 in human brain using dynamic 17O-MRI at 3T. 3T动态17O-MRI定量人脑区域ccro2。
IF 2 4区 医学 Q1 Medicine Pub Date : 2023-08-07 DOI: 10.1016/j.zemedi.2023.07.004
Hao Song, Johannes Fisher, Ali Caglar Özen, Burak Akin, Stefan Schumann, Michael Bock

Objective: To investigate the feasibility of cerebral metabolic rate of oxygen consumption (CMRO2) measurements with MRI at 3 Tesla in different brain regions.

Methods: CMRO2 represents a key indicator of the physiological state of brain tissue. Dynamic 17O-MRI with inhalation of isotopically enriched 17O gas has been used to quantify global CMRO2 in brain white (WM) and gray matter (GM). However, global CMRO2 can only reflect the overall oxygen metabolism of the brain and cannot provide enough information on local tissue oxygen metabolism. To investigate the feasibility of determination of regional CMRO2 at a clinical 3 T MRI system, CMRO2 values in frontal, parietal and occipital WM and GM were determined in 5 healthy volunteers and compared to evaluate the regional differences of oxygen metabolism in WM and GM. Additionally, regional CMRO2 values were determined in deep brain structures including thalamus, dorsal striatum, caudate nucleus and insula cortex and in the cerebella, and compared with literature values from 15O-PET studies.

Results: In cortical GM the determined CMRO2 values were in good agreement with the literature, whereas values in WM were about 32-48% higher than literature values. Regional analysis revealed a significantly higher CMRO2 in the occipital GM compared to the frontal and parietal GM. By contrast, no significant difference of CMRO2 was observed across the WM. In addition, CMRO2 in deep brain structures was lower compared to literature values and in the cerebella a good hemispheric symmetry of the tissue oxygen metabolism was found.

Conclusion: Dynamic 17O-MRI enables direct, non-invasive determination of regional CMRO2 in brain structures in healthy volunteers at 3T.

目的:探讨MRI在3特斯拉下测量不同脑区脑代谢耗氧量(cro2)的可行性。方法:cmor2是反映脑组织生理状态的关键指标。吸入同位素富集的17O气体的动态17O- mri已被用于量化脑白质(WM)和灰质(GM)中cmoro2的总量。然而,全局cmor2只能反映大脑的整体氧代谢,不能提供足够的局部组织氧代谢信息。为了探讨在临床3t MRI系统中检测区域cmor2的可行性,我们在5名健康志愿者的额部、顶叶和枕部WM和GM中检测cmor2值,并比较WM和GM中氧代谢的区域差异。此外,在丘脑、背纹状体、尾状核和岛叶皮质以及小脑中检测cmor2的区域值。并与15O-PET研究的文献值进行比较。结果:皮质GM的cmo_2测定值与文献吻合较好,而WM的cmo_2测定值比文献高32-48%。区域分析显示,与额叶和顶叶GM相比,枕骨GM的cmor2显著升高。相比之下,整个WM的cmor2无显著差异。此外,与文献值相比,脑深部结构中的cmor2较低,并且在小脑中发现了良好的组织氧代谢半球对称性。结论:动态17O-MRI可以在3T时直接、无创地检测健康志愿者脑结构中的cmor2区域。
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引用次数: 0
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Zeitschrift fur Medizinische Physik
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