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An Optical Imaging System for Capturing Images in Low-Light Aquatic Habitats Using Only Ambient Light. 仅使用环境光捕获低光水生栖息地图像的光学成像系统。
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-09-01 DOI: 10.25607/OBP-1552
Camille Pagniello, J. Butler, Annie Rosen, Addison Sherwood, P. Roberts, E. Parnell, J. Jaffe, A. Sirovic
S1. DEPLOYMENT AND UNDERWATER OPERATION The optical imaging system (OIS) was deployed in the kelp forests on the northern edge of the South La Jolla State Marine Reserve (SMR; 32.8263°N, 117.2901°W) in approximately 14 m water depth from July 10 to 23, 2018 (Figure S1a). It captured 24 images every 12 minutes between 05:00 and 21:00 (i.e., at least one hour before sunrise and after sunset) to ensure that no potentially usable light conditions were missed for image acquisition. Images were captured under aperture priority mode (aperture: f2.8) as uncompressed, raw image files with a 16:9 aspect ratio. The focusing distance of the lens was set at 0.3 m in air so that a fish one meter away from the camera in water would be in focus. This was determined using equations in Jenkins and White (2001) to compute the focusing distance for thick lenses, and we have included a MATLAB R2016b (MathWorks, Natick, MA) script to calculate this in the GitHub repository (https://github.com/cpagniel/FishOASIS/blob/master/hardware/FishOASIS_lens_ focusing_dist_code.m). The ISO (International Standards Organization) sensitivity of each image was automatically set by the camera between 50 and 409,600. The white balance was also automatically set by the camera. The OIS was mounted by divers to an L-bracket (for landscape images) on a 1 m tall u-post set in a 50 × 50 × 10 cm concrete block (Figure S1b). It could also be mounted directly to the stand for portrait images. The battery pack was placed on the concrete block and cable-tied to two eyebolts set in the concrete block. A HOBO Pendant temperature/light 8K data logger (Onset Computer Corporation, Bourne, MA) was attached to the camera housing to measure seawater temperature (in °C) and ambient light (in lux). To correct for the ambient light spectra, a DGK Color Tools WDKK Waterproof Color Chart was deployed in the field of view of the camera at a distance of 2 m. To approximate the distance of fishes from the camera, distances to various stationary objects always visible in the images (e.g., rocks, kelp holdfasts, cinderblocks) from the camera were measured using a transect tape. To demonstrate the OIS’s ability to synchronize its clock with that of a passive acoustic recorder, the OIS was deployed alongside a SoundTrap ST4300 (Ocean Instruments, Auckland, NZ) four-channel acoustic recorder equipped An Optical Imaging System for Capturing Images in Low-Light Aquatic Habitats Using Only Ambient Light
S1.部署和水下作业2018年7月10日至23日,光学成像系统(OIS)部署在南拉霍亚州海洋保护区(SMR;32.8263°N,117.2901°W)北部边缘的海带林中,水深约14米(图S1a)。它在05:00至21:00(即日出前和日落后至少一小时)之间每12分钟拍摄24张图像,以确保图像采集不会错过潜在的可用光照条件。图像是在光圈优先模式(光圈:f2.8)下拍摄的,作为未压缩的原始图像文件,纵横比为16:9。镜头在空中的焦距设置为0.3米,这样水中距离相机一米远的鱼就会对焦。这是使用Jenkins和White(2001)中的方程来计算厚透镜的聚焦距离来确定的,我们在GitHub存储库中包含了一个MATLAB R2016b(MathWorks,Natick,MA)脚本来计算这一点(https://github.com/cpagniel/FishOASIS/blob/master/hardware/FishOASIS_lens_focusing_dist_code.m)。每个图像的ISO(国际标准组织)灵敏度由相机自动设置在50到409600之间。白平衡也是由相机自动设置的。OIS由潜水员安装在一个L形支架上(用于景观图像),该支架位于一个50×50×10cm混凝土块中的1米高的u形支柱上(图S1b)。它也可以直接安装在支架上进行人像拍摄。电池组放置在混凝土块上,电缆系在混凝土块中的两个吊环螺栓上。HOBO Pendant温度/光线8K数据记录器(Onset Computer Corporation,Bourne,MA)连接到相机外壳上,用于测量海水温度(单位:°C)和环境光线(单位:勒克斯)。为了校正环境光谱,DGK彩色工具WDKK防水彩色图被部署在距离相机2米的视野中。为了近似鱼类与相机的距离,使用样带测量了与相机图像中始终可见的各种静止物体(例如岩石、海带固定物、煤渣块)的距离。为了证明OIS将其时钟与被动声学记录器同步的能力,OIS与SoundTrap ST4300(新西兰奥克兰海洋仪器公司)四通道声学记录器一起部署。该记录器配备了一个光学成像系统,用于仅使用环境光在弱光水生栖息地捕获图像
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引用次数: 2
CAREER PROFILES • OPTIONS AND INSIGHTS: Elizabeth Cerny-Chipman 职业简介•选项和见解:伊丽莎白Cerny-Chipman
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-09-01 DOI: 10.5670/OCEANOG.2021.317
Elizabeth B. Cerny-Chipman
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引用次数: 0
Can Right Whales Out-Swim Climate Change? Can We? 露脊鲸能战胜气候变化吗?我们可以吗?
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-09-01 DOI: 10.5670/OCEANOG.2021.315
A. Pershing, D. Pendleton
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引用次数: 2
Marine Mystery Organisms: Learning Marine Ecology with Whales, Not Flashcards 海洋神秘生物:与鲸鱼一起学习海洋生态学,而不是抽认卡
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-09-01 DOI: 10.5670/OCEANOG.2021.304
R. Freeman
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引用次数: 0
Changing the Culture of Coastal, Ocean, and Marine Sciences: Strategies for Individual and Collective Actions 改变海岸、海洋和海洋科学的文化:个人和集体行动的策略
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-09-01 DOI: 10.5670/OCEANOG.2021.307
M. Behl, S. Cooper, C. Garza, S. Kolesar, S. Legg, Jonathan C. Lewis, L. White, Brandon Jones
INTRODUCTION Over the past few years, abundant news articles reporting violence against communities of color in America have spurred members of the geoscience community to pay much-needed attention to promoting belonging, accessibility, justice, equity, diversity, and inclusion in our disciplines, including in the coastal, ocean, and marine sciences (e.g., see antiracism initiatives No Time for Silence, Call for a Robust Anti-Racism Plan for The Geosciences, Unlearning Racism in Geoscience, and Black in Marine Science, among others). For years, many wellintentioned programs have invested time and resources to attract students from historically excluded groups into the coastal, ocean, and marine (COM) science workforce, with limited retention success. It has become increasingly clear that recruitment is not enough. What is urgently needed is a change in the culture that includes systematic eradication of existing paradigms and models that have perpetuated racism, inequities, and injustices in higher education. Bold new paradigms and models are needed to create working and learning climates where all can thrive, both personally and professionally. To truly take an all-hands-on-deck approach to solving the enormous environmental problems humanity now faces, the COM science enterprise needs to critically examine and evaluate the effectiveness of its traditional working and learning practices. Why would anyone want to stay in a discipline that is disrespectful, toxic, and unwelcoming? How do we expect to retain people if they don’t see others with similar backgrounds and experiences in positions of leadership and power? How can people pursue science in environments that perpetuate harassment, discrimination, and misconduct? We will all benefit by creating a scientific and professional culture that offers its workforce exciting, financially viable, REGULAR ISSUE FEATURE
在过去的几年里,大量的新闻报道了美国针对有色人种社区的暴力行为,这促使地球科学社区的成员们迫切需要关注在我们的学科中促进归属感、可及性、正义、公平、多样性和包容性,包括在沿海、海洋和海洋科学中(例如,参见反种族主义倡议“没有时间沉默”、呼吁为地球科学制定强有力的反种族主义计划、忘记地球科学中的种族主义、和布莱克在海洋科学等)。多年来,许多善意的项目投入了时间和资源,以吸引历史上被排斥的群体的学生进入沿海、海洋和海洋(COM)科学队伍,但收效甚微。越来越明显的是,光靠招聘是不够的。我们迫切需要的是改变文化,包括系统地根除现有的范式和模式,这些范式和模式使高等教育中的种族主义、不平等和不公正得以延续。需要大胆的新范例和模式来创造工作和学习环境,使所有人都能在个人和职业上茁壮成长。为了真正采取全体参与的方法来解决人类目前面临的巨大环境问题,COM科学企业需要严格检查和评估其传统工作和学习实践的有效性。为什么会有人想要留在一个不尊重、有害和不受欢迎的学科里呢?如果员工在领导岗位和权力岗位上看不到有类似背景和经验的人,我们又怎么能留住他们呢?人们如何在骚扰、歧视和不当行为持续存在的环境中追求科学?我们将通过创造一种科学和专业的文化,为其员工提供令人兴奋的,经济上可行的,定期发行的特色
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引用次数: 6
Tangled Up in Blue 缠在蓝色里
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-09-01 DOI: 10.5670/OCEANOG.2021.313
Bob Friel
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引用次数: 0
Envisioning and Writing a Thesis Proposal 设想和撰写论文提案
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-09-01 DOI: 10.5670/OCEANOG.2021.316
Peter J. S. Franks
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引用次数: 1
The Intertwined Futures of Whales and Humans 鲸鱼与人类交织的未来
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-09-01 DOI: 10.5670/OCEANOG.2021.314
N. Record
16 IF YOU COULD somehow ask a North Atlantic right whale what she thinks the future holds, what would she say? Right whales must, in some way, think about the future in order to make survival decisions. As an ocean science community, our eyes are trained increasingly on the future as well. The twin global environmental crises of climate change and biodiversity loss have elevated the science of real-world prediction to one of urgent interest. At timescales ranging from hours to decades, society is asking ocean science for actionable predictions, projections, and forecasts, with the hope of mitigating and adapting to the changing ocean. Meeting this challenge requires more than the ability to predict ocean dynamics. For highly endangered species like the North Atlantic right whale (Eubalaena glacialis), better foresight might have prepared us for the changes that recently led to a catastrophic unusual mortality event (UME). Predictable oceanographic changes in turn drove changes in right whale migration and calving, reversing what had been a recovery of the species. Now, fewer than 400 of them remain alive. For many of us working in right whale science, policy, and management, we are haunted by questions of how the UME might have been anticipated and prevented and how we might prevent something similar in the future. The oceanography itself, while crucial, is only half of the equation. As Meyer-Gutbrod et al. (2021, in this issue) detail in their analysis, the oceanographic mechanisms behind the recent changes are well understood by the oceanographic community. Warming has led to shifts in ocean currents like the Gulf Stream, which influence the source of deep-water supply to the Gulf of Maine (Neto et al., 2021). Changes in deepwater conditions alter the availability of right whales’ primary prey, Calanus finmarchicus (Record et al., 2019). Without a reliable supply of prey, foraging patterns have changed, broadening the range outside of protected areas, leading to higher mortality (Davies and Brillant, 2019) and reduced calving, and thus putting the species at significant risk of extinction (Meyer-Gutbrod et al., 2021, in this issue). PERSPECTIVE
16如果你能问北大西洋露脊鲸她认为未来会怎样,她会怎么说?露脊鲸必须以某种方式思考未来,才能做出生存决定。作为一个海洋科学界,我们的眼睛也越来越关注未来。气候变化和生物多样性丧失这两大全球环境危机使现实世界预测科学成为人们迫切关注的问题之一。在从几个小时到几十年的时间尺度上,社会要求海洋科学提供可操作的预测、预测和预测,以期缓解和适应不断变化的海洋。应对这一挑战需要的不仅仅是预测海洋动力学的能力。对于北大西洋露脊鲸(Eubalaena glacialis)等高度濒危物种来说,更好的远见可能会让我们为最近导致灾难性异常死亡事件(UME)的变化做好准备。可预测的海洋学变化反过来推动了露脊鲸迁徙和产仔的变化,扭转了该物种的复苏。现在,他们中只有不到400人还活着。对于我们许多从事露脊鲸科学、政策和管理工作的人来说,我们一直被如何预测和预防UME以及我们如何在未来防止类似的事情的问题所困扰。海洋学本身虽然至关重要,但只是等式的一半。正如Meyer Gutbrod等人(2021,本期)在他们的分析中详细描述的那样,海洋学界对最近变化背后的海洋学机制有着深刻的理解。变暖导致了墨西哥湾流等洋流的变化,这影响了缅因湾深水供应的来源(Neto等人,2021)。深水条件的变化改变了露脊鲸主要猎物Calanus finmarchicus的可用性(Record等人,2019)。在没有可靠猎物供应的情况下,觅食模式发生了变化,扩大了保护区以外的范围,导致更高的死亡率(Davies和Brillant,2019)和产仔减少,从而使该物种面临重大灭绝风险(Meyer Gutbrod et al.,2021,在本期中)。透视
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引用次数: 0
Data Management and Interactive Visualizations for the Evolving Marine Biodiversity Observation Network 不断发展的海洋生物多样性观测网络的数据管理和交互式可视化
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-06-01 DOI: 10.5670/oceanog.2021.220
A. Benson, T. Murray, G. Canonico, E. Montes, F. Muller‐Karger, M. Kavanaugh, J. Trinanes, L. Dewitt
Assessing the current state of and predicting change in the ocean’s biological and ecosystem resources requires observations and research to safeguard these valuable public assets. The Marine Biodiversity Observation Network (MBON) partnered with the Global Ocean Observing System Biology and Ecosystems Panel and the Ocean Biodiversity Information System to address these needs through collaboration, data standardization, and data sharing. Here, we describe the generalized MBON data processing flow, which includes several steps to ensure that data are findable, accessible, interoperable, and reusable. By following this flow, data collected and managed by MBON have contributed to our understanding of the Global Ocean Observing System Essential Ocean Variables and demonstrated the value of web-based, interactive tools to explore and better understand environmental change. Although the MBON’s generalized data processing flow is already in practice, work remains in building ontologies for biological concepts, improving processing scripts for data standardization, and speeding up the data collection-to-sharing timeframe.
评估海洋生物和生态系统资源的现状和预测其变化需要进行观察和研究,以保护这些宝贵的公共资产。海洋生物多样性观测网(MBON)与全球海洋观测系统生物学和生态系统小组以及海洋生物多样性信息系统合作,通过协作、数据标准化和数据共享来满足这些需求。在这里,我们将描述广义的MBON数据处理流,其中包括确保数据可查找、可访问、可互操作和可重用的几个步骤。通过遵循这一流程,MBON收集和管理的数据有助于我们对全球海洋观测系统基本海洋变量的理解,并展示了基于网络的交互式工具在探索和更好地了解环境变化方面的价值。尽管MBON的广义数据处理流程已经在实践中,但仍需要为生物概念构建本体,改进数据标准化的处理脚本,加快数据收集到共享的时间框架。
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引用次数: 4
Surface Wave Breaking Caused by Internal Solitary Waves: Effects on Radar Backscattering Measured by SAR and Radar Altimeter 内部孤立波引起的表面波破裂:对SAR和雷达高度计测量的雷达后向散射的影响
IF 2.8 4区 地球科学 Q1 OCEANOGRAPHY Pub Date : 2021-06-01 DOI: 10.5670/OCEANOG.2021.203
J. M. Magalhães, W. Alpers, A. M. Santos-Ferreira, Jose Machado da Silva
Breaking surface waves play a key role in the exchange of momentum, heat, and gases between the atmosphere and the ocean. Waves break at the ocean’s surface at high or medium wind speeds or in the absence of wind due to shoaling of the seafloor. However, surface waves also break due to interactions with internal solitary waves (ISWs). In this paper, we revisit surface wave breaking caused by ISWs and how ISWs are manifested in synthetic aperture radar (SAR) images acquired by the TerraSAR-X and Sentinel-1 satellites and in high-resolution radar altimeter data acquired by the SAR altimeter (SRAL) onboard the Sentinel-3A satellite. X-band TerraSAR-X images acquired at low wind speeds suggest that meter-scale surface breaking waves resulting from large-scale ISWs are associated with large modulations in backscatter at HH and VV polarizations that cannot be explained by present theories. Furthermore, Sentinel-1 C-band SAR satellite images acquired at moderate to high wind speeds also exhibit large radar signatures from surface wave breaking at VV and VH cross-polarizations. Finally, new observations from the Sentinel-3 SRAL altimeter show clear evidence of significant wave height (SWH) variations along the propagation paths of ISWs. The SWH signatures are unique in showing that the surface wave energy does not return to its unperturbed level after an ISW passes, most likely because intense meter-scale wave breaking results in surface wave energy dissipation. In summary, these results show that surface wave breaking contributes significantly to radar remote sensing of ISWs.
破裂表面波在大气和海洋之间的动量、热量和气体交换中起着关键作用。波浪在高或中等风速或由于海底变浅而无风的情况下在海洋表面破碎。然而,表面波也会由于与内部孤立波(ISW)的相互作用而破裂。在本文中,我们回顾了由ISW引起的表面波破碎,以及ISW如何在TerraSAR-X和Sentinel-1卫星采集的合成孔径雷达(SAR)图像中以及在Sentinel-3A卫星上的SAR高度计(SRAL)采集的高分辨率雷达高度计数据中表现出来。在低风速下获得的X波段TerraSAR-X图像表明,由大规模ISW产生的米级表面破碎波与HH和VV偏振下的反向散射中的大调制有关,这无法用现有理论来解释。此外,在中高风速下获取的Sentinel-1 C波段SAR卫星图像也显示出VV和VH交叉极化时表面波破碎的大雷达特征。最后,Sentinel-3 SRAL高度计的新观测显示,有明确证据表明,ISW的传播路径上存在显著的波高(SWH)变化。SWH特征是独特的,表明在ISW通过后,表面波能量不会恢复到其未受干扰的水平,很可能是因为强烈的米级波浪破碎导致表面波能量耗散。总之,这些结果表明,表面波破碎对ISW的雷达遥感有很大贡献。
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引用次数: 14
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Oceanography
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