Background
Stenotrophomonas maltophilia is an environmental opportunistic pathogen that affects immunocompromised patients. Its genomic heterogeneity led to definition of the S. maltophilia complex, including different subpopulations (genogroups) with unknown respective dissemination potential. This study aimed to clarify the epidemiology and genogroup contribution of S. maltophilia in a hospital setting using a comprehensive whole genome sequencing (WGS) approach.
Methods
A prospective 16-month study was conducted in a 900-bed university hospital. In total, 204 strains from clinical and environmental samples underwent WGS. Core genome multi-locus sequence typing was performed to determine relatedness between strains, according to epidemiological data; allelic variation among clustered strains was analysed. Genogroups were identified from WGS, and their relative contribution among clustered and non-clustered strains was identified.
Results
Among the 189 non-duplicated genomes of human (N=156) and environmental (N=33) origin, 24 clusters (55 strains, two to six per cluster) were identified: four environmental, 16 human and four mixed. Temporal and/or geographical overlap was identified in 22 of 24 clusters. Although predominant among human strains, the main genogroups considered as human-adapted, such as genogroup 6, were not over-represented among clustered strains. Among clustered strains, up to six allelic variants were identified; six genes were involved in more than one allelic variant.
Conclusion
Although S. maltophilia is considered to have low cross-transmission potential, this longitudinal study highlighted some putative patient-to-patient cross-transmission events, without over-representation of some particular genogroups. Pending further larger studies, these results advocate for reinforcement of infection control around S. maltophilia carriers in high-risk settings.
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