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QTL-Seq Identifies Genomic Regions Associated with Resistance to Bipolaris oryzae and Their Association with Defense Related Enzyme Activity in Rice QTL-Seq鉴定水稻抗稻瘟病相关基因组区域及其与防御相关酶活性的关联
IF 6.1 2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 Epub Date: 2025-12-24 DOI: 10.1016/j.rsci.2025.08.012
Jagjeet Singh Lore , Sanjay Kumar , Dharminder Bhatia , Mandeep Singh Hunjan , Rishabh Maheshwari , Dayananda Veeriah Patil , Jyoti Jain
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引用次数: 0
Influences of Milling Degree on Zinc Bioavailability in Rice Grains Varied in Zinc and Phytic Acid Levels 碾磨程度对锌和植酸水平不同水稻籽粒锌生物利用度的影响
IF 6.1 2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 Epub Date: 2025-10-30 DOI: 10.1016/j.rsci.2025.10.007
Shaojie HUO , Jiaqi LIN , Yuxuan SUN , Dianxing WU , Xiaoli SHU , Yin WANG
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引用次数: 0
WRKY53: A Key Player in Stress Responses and Growth Regulation in Rice WRKY53:水稻胁迫响应和生长调控的关键基因
IF 6.1 2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 Epub Date: 2025-09-04 DOI: 10.1016/j.rsci.2025.08.008
Shuaizu AN , Jun LÜ , Zemin MA , Xuanlin GAO , Biaoming ZHANG , Pingfang YANG , Yinggen KE
As sessile organisms, plants must adapt various stresses. Accordingly, they have evolved several plant-specific growth and developmental processes. WRKY53 is a member of the WRKY transcription factor family, which plays a crucial role in rice growth and development, stress response, and hormone signal transduction. This review discusses the role of WRKY53 in stress response, focusing on its functions in cold tolerance, salt tolerance, disease resistance, and pest defense, and explores its role in regulating rice leaf senescence and seed germination. This article also proposes future research directions, including functional genomics studies, protein interaction network analyses, hormone signal transduction pathways, genetic improvement strategies, applications of gene editing technologies, molecular basis of stress responses, cross- species functional conservation, and bioinformatics and comparative genomics research. This review highlights the importance of WRKY53 in rice biology and provides new perspectives and strategies for future research and genetic improvement of rice.
作为无根生物,植物必须适应各种逆境。因此,它们进化出了几种植物特有的生长发育过程。WRKY53是WRKY转录因子家族的一员,在水稻生长发育、胁迫应答和激素信号转导中起着至关重要的作用。本文综述了WRKY53在胁迫响应中的作用,重点介绍了WRKY53在水稻抗寒、耐盐、抗病、防虫等方面的功能,并探讨了WRKY53在水稻叶片衰老和种子萌发调控中的作用。提出了今后的研究方向,包括功能基因组学研究、蛋白质相互作用网络分析、激素信号转导途径、遗传改良策略、基因编辑技术应用、应激反应分子基础、跨物种功能保护、生物信息学和比较基因组学研究等。本文综述了WRKY53在水稻生物学中的重要作用,为今后水稻研究和遗传改良提供了新的思路和策略。
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引用次数: 0
Enlarged Sink Capacity and Optimized Population Physiological Characteristics are Key to High Yield in Conventional Japonica Rice 扩大库容和优化群体生理特性是常规粳稻高产的关键
IF 6.1 2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 Epub Date: 2025-10-15 DOI: 10.1016/j.rsci.2025.10.004
Zhang Haipeng , Mi Kailiang , Chen Ting, Zhang Muyan, Xu Fangfu, Zhang Hongcheng
Clarifying the photosynthetic and population characteristics of conventional japonica rice at different yield levels is crucial for boosting yield and ensuring food security. Therefore, a two-year field trial with two conventional japonica varieties was conducted at four planting densities: 16 cm × 30 cm (D1), 14 cm × 30 cm (D2), 12 cm × 30 cm (D3), and 10 cm × 30 cm (D4). This study aimed to investigate how photosynthetic and population characteristics influence grain yield under varying planting densities. The results indicated that higher yields were primarily driven by increased grain weight and seed-setting rate (with a 9.68%‒11.40% higher single panicle weight), supported by optimized dry matter translocation and source-sink relationships. Elevated planting density (D2‒D4) enhanced panicle number and total spikelet number (by 3.91%‒15.00%) but reduced the number of spikelets per panicle, 1000-grain weight, and photosynthetic efficiency due to mutual shading. Despite these trade-offs, yield increased by 4.10%‒12.42% under higher densities. The use of planting density D4 in japonica rice cultivation contributed to maximize yield. These findings provide important theoretical insights and practical significance for increasing the yield of conventional japonica rice and ensuring food security.
阐明不同产量水平下常规粳稻的光合特性和种群特征,对提高产量和保障粮食安全至关重要。为此,以2个粳稻品种为研究对象,以16 cm × 30 cm (D1)、14 cm × 30 cm (D2)、12 cm × 30 cm (D3)和10 cm × 30 cm (D4) 4种种植密度进行了为期2年的田间试验。本研究旨在探讨不同种植密度下光合特性和群体特性对籽粒产量的影响。结果表明,增产主要是由于籽粒重和结实率的提高(单穗重提高9.68% ~ 11.40%),并有优化的干物质转运和源库关系的支持。增加种植密度(d2 ~ d4)可提高穗数和总粒数(3.91% ~ 15.00%),但由于相互遮荫,降低了每穗粒数、千粒重和光合效率。尽管存在这些权衡,但在较高的密度下,产量增加了4.10%-12.42%。种植密度D4在粳稻栽培中的应用有助于产量最大化。这些发现对提高传统粳稻产量、保障粮食安全具有重要的理论见解和现实意义。
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引用次数: 0
High Throughput 3D Phenotyping of Canopy Occupation Volume as Major Predictor of Rice Canopy Photosynthesis 冠层占用体积作为水稻冠层光合作用主要预测因子的高通量三维表型研究
IF 6.1 2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 Epub Date: 2025-10-17 DOI: 10.1016/j.rsci.2025.10.002
Zhou Jiaren , Song Qingfeng , Li Wanwan , Zhang Mengqi , Zhang Man , Zhu Xinguang , Wang Minjuan
Canopy photosynthesis, rather than leaf photosynthesis, is highly related to plant biomass and yield formation. Studying canopy photosynthesis and identifying the parameters that control it can help optimize agricultural management and achieve crop yield potential. Compared with traditional parameters, canopy occupation volume (COV) offers an integrative parameter on canopy architecture related to canopy photosynthetic rates. In this study, we developed a high-throughput method to derive COV for different rice varieties. We first used multi-perspective two-dimensional imaging to reconstruct three-dimensional point clouds of rice plants and developed a suite of pipelines to calculate plant height, leaf number, tiller number, and biomass, with R2 values of 91.8%, 95.9%, 82.3%, and 94.3%, respectively. We further employed point cloud data to reconstruct the surfaces of rice plants and construct a virtual canopy model of the rice population. Light distribution was simulated using a ray-tracing algorithm and canopy photosynthetic rates were simulated via photosynthetic rate-incident light intensity curve fitting. Furthermore, we systematically explored the relationships between canopy phenotypes and photosynthetic rates, and found that COV was the most effective predictor of canopy photosynthesis, achieving an R2 value of 92.1%. Adjustment in atmospheric transmittance showed that COV strongly correlated with canopy photosynthesis under different light conditions, with higher accuracy observed under diffuse light. Variations in planting density confirmed that this correlation remained strong at the community level. In summary, this study demonstrates that COV is closely linked to simulated canopy photosynthesis and the developed pipeline can support future agronomic and breeding research.
与植物生物量和产量形成密切相关的是冠层光合作用,而不是叶片光合作用。研究冠层光合作用及其控制参数有助于优化农业管理,实现作物产量潜力。与传统参数相比,冠层占用体积(COV)提供了与冠层光合速率相关的冠层结构的综合参数。在这项研究中,我们开发了一种高通量的方法来获得不同水稻品种的冠状病毒。我们首先利用多视角二维成像技术重建水稻植株三维点云,并开发了一套计算植株高度、叶片数、分蘖数和生物量的管道,R2值分别为91.8%、95.9%、82.3%和94.3%。我们进一步利用点云数据重构水稻植株表面,构建水稻种群的虚拟冠层模型。利用光线追踪算法模拟光照分布,通过光合速率-入射光强曲线拟合模拟冠层光合速率。此外,我们系统地探索了冠层表型与光合速率之间的关系,发现冠状病毒是冠层光合作用最有效的预测因子,R2值为92.1%。大气透过率调整结果表明,不同光照条件下COV与冠层光合作用密切相关,漫射光照下的观测精度更高。种植密度的变化证实了这种相关性在群落水平上仍然很强。综上所述,本研究表明冠状病毒与模拟冠层光合作用密切相关,开发的管道可以为未来的农艺和育种研究提供支持。
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引用次数: 0
NRAMPs: Versatile Transporters Involved in Metal Ion Homeostasis and Their Applications in Rice Breeding 参与金属离子稳态的多功能转运蛋白NRAMPs及其在水稻育种中的应用
IF 6.1 2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 Epub Date: 2025-10-30 DOI: 10.1016/j.rsci.2025.10.010
Qina HUANG , Lijuan WU , Hongrui JIANG , Yan HE , Song LIU , Changdeng YANG , Yan LIANG
The NRAMP (natural resistance-associated macrophage protein) family plays a pivotal role in metal ion transport, regulating both essential micronutrient uptake and toxic heavy metal accumulation in plants. In rice (Oryza sativa), OsNRAMP transporters critically influence metal homeostasis, stress adaptation, and grain safety. Among them, OsNRAMP5 serves as a major entry point for cadmium (Cd) and manganese (Mn) uptake, making it a prime target for low-Cd rice breeding. However, knockout of OsNRAMP5 leads to severe Mn deficiency, highlighting the need for precise genetic modifications (e.g., OsNRAMP5-Q337K), which reduce Cd accumulation while maintaining Mn nutrition. Additionally, OsNRAMP1 and OsNRAMP2 contribute to Cd translocation and plant immunity, whereas OsNRAMP3/4/6/7 participate in Mn, iron, and zinc distribution and stress responses. This review systematically summarizes the structural, functional, and regulatory mechanisms of OsNRAMPs, emphasizing their roles in metal transport, pathogen resistance, and abiotic stress adaptation. Furthermore, we discuss strategies for developing low-Cd rice varieties, including QTL-based breeding, CRISPR/Cas9-mediated gene editing, and multi-gene stacking approaches. Finally, we outline future research directions, such as structural engineering of metal-binding sites and field validation of engineered rice lines, to ensure sustainable rice production in heavy metal-contaminated soils.
NRAMP(天然抗性相关巨噬细胞蛋白)家族在金属离子运输中起关键作用,调节植物必需微量营养素的吸收和有毒重金属的积累。在水稻(Oryza sativa)中,OsNRAMP转运体对金属稳态、胁迫适应和粮食安全具有重要影响。其中,OsNRAMP5作为镉(Cd)和锰(Mn)吸收的主要入口点,是低镉水稻育种的主要靶点。然而,敲除OsNRAMP5会导致严重的锰缺乏,这表明需要精确的基因修饰(如OsNRAMP5- q337k),以减少镉积累,同时保持锰营养。此外,OsNRAMP1和OsNRAMP2参与镉转运和植物免疫,而OsNRAMP3/4/6/7参与锰、铁和锌的分配和胁迫响应。本文系统综述了OsNRAMPs的结构、功能和调控机制,重点介绍了OsNRAMPs在金属转运、病原体抗性和非生物胁迫适应中的作用。此外,我们还讨论了开发低镉水稻品种的策略,包括基于qtl的育种、CRISPR/ cas9介导的基因编辑和多基因堆叠方法。最后,我们展望了未来的研究方向,如金属结合位点的结构工程和工程水稻品系的田间验证,以确保重金属污染土壤中水稻的可持续生产。
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引用次数: 0
Mechanism of Pleiotropic Gene OsSP3 Regulating Root Development in Rice 多效性基因OsSP3调控水稻根系发育的机制
IF 6.1 2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 Epub Date: 2025-12-22 DOI: 10.1016/j.rsci.2025.10.011
Ye Jing , Liang Chuyan , Zhai Rongrong, Wu Mingming, Zhang Xiaoming, Ye Shenghai
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引用次数: 0
Wood Vinegar Enhances Seedling Rate of Rice Seeds under Flooding Stress by Mitigating Oxidative Damage and Maintaining Energy Homeostasis 木醋通过减轻氧化损伤和维持能量稳态提高水稻种子出苗率
IF 6.1 2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 Epub Date: 2025-09-04 DOI: 10.1016/j.rsci.2025.08.006
Zhu Junlin , Zheng Guangjie , Tao Yi, Liao Wenli, Ye Chang, Xu Ya’nan, Xiao Deshun, Chu Guang, Xu Chunmei, Wang Danying
Flooding stress is a major adverse condition during the emergence period of direct-seeded rice. This study investigated the use of wood vinegar as a seed soaking treatment to enhance rice seedling rates under flooding stress, exploring both the methodology and physiological mechanisms involved. The optimal seed soaking concentration was determined through a gradient experiment, followed by a multi-cultivar validation test. The physiological mechanism of wood vinegar soaking on seedling emergence was analyzed by measuring the electrical conductivity of the flooding water, the changes in starch and soluble sugar contents in the grains and sprouts, and the dynamics of α-amylase activity and antioxidant-related enzyme activities in the sprouts. The results showed that soaking rice seeds in a wood vinegar solution at a low concentration significantly enhanced the emergence of rice seedlings under flooding conditions, with a 100-fold dilution having the most pronounced effect, increasing seedling rates by 50.6%–60.0%. Further analysis indicated that wood vinegar treatment enhanced seedling establishment by inducing a significant increase in α-amylase activity, leading to a 74.9%–213.6% increase in soluble sugar content in the sprouts during 2–8 d after flooding stress compared with the control. Additionally, the treatment increased superoxide dismutase and peroxidase activities in the sprouts, mitigating lipid peroxidation of the cell membranes, and notably lower water electrical conductivity was observed in wood vinegar-treated seeds compared with the control. In conclusion, soaking rice seeds in a 100-fold diluted wood vinegar solution improves rice seedling rates under flooding stress by mitigating oxidative damage and maintaining energy supply. This approach is valuable for developing cost-effective seed treatment technologies and offering novel strategies to improve seedling rates and uniformity of direct-seeded rice under flooding conditions.
水患胁迫是直播水稻出苗期的主要不利条件。本研究探讨了木醋浸种处理提高水稻在洪涝胁迫下出苗率的方法和生理机制。通过梯度试验确定最佳浸种浓度,并进行多品种验证试验。通过测定淹水电导率、籽粒和芽中淀粉和可溶性糖含量的变化、芽中α-淀粉酶活性和抗氧化相关酶活性的动态变化,分析木醋浸泡对苗木出苗的生理机制。结果表明,在低浓度木醋溶液中浸泡水稻种子可显著提高水稻在淹水条件下的出苗率,其中稀释100倍效果最显著,出苗率提高50.6% ~ 60.0%。进一步分析表明,木醋处理通过显著提高α-淀粉酶活性促进了幼苗的成活率,在淹水胁迫后2 ~ 8 d内芽苗菜中可溶性糖含量较对照提高了74.9% ~ 213.6%。此外,处理提高了芽中超氧化物歧化酶和过氧化物酶的活性,减轻了细胞膜脂质过氧化,并且与对照相比,处理过的木材种子的水电导率显著降低。综上所述,将水稻种子浸泡在稀释100倍的木醋溶液中,通过减轻氧化损伤和维持能量供应,提高了水稻在洪涝胁迫下的出苗率。该方法对于开发具有成本效益的种子处理技术,并为提高水患条件下直接播种水稻的出苗率和均匀性提供新策略具有重要价值。
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引用次数: 0
Rice Bran as Nutrient-Dense Food in Gut Health and Beyond 米糠作为营养丰富的食物在肠道健康及其他方面
IF 6.1 2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 Epub Date: 2025-10-30 DOI: 10.1016/j.rsci.2025.10.005
Pratap Kalita , Bedanta Bhattacharjee , Bhrigu Kumar Das , Saikat Sen , Raja Chakraborty , Abdul Baquee Ahmed
Rice bran is the outer layer of the rice grain and a by-product of milling rice kernels, possessing high nutritional and therapeutic value. It is abundant in dietary fibers, vitamins, minerals, polyphenols, and various antioxidant molecules. The health-promoting effects of rice bran and its biomolecules have been documented in several studies. In this review, we evaluated the different nutritive and health-promoting effects of rice bran, particularly its impact on gut health and other chronic conditions associated with gut health. The biomolecules present in rice bran and their potential therapeutic effects were also summarized. This paper recapitulated the potential therapeutic and preventive efficacy of rice bran against various ailments, along with their mechanisms of action. Rice bran is an important source of nutritive substances. In addition to their nutritive value, rice bran is rich in diverse biomolecules such as anthocyanins, flavonoids, phenolics, γ-oryzanol, phytosterols and derivatives, saturated fatty acids, monounsaturated fatty acids, and polyunsaturated fatty acids. The dietary fibers in rice bran play a key role in modulating gut microbiota, reducing inflammation, and maintaining gut health. Rice bran and its components have been found to exhibit therapeutic benefits against inflammation, diabetes, cancer, liver disorders, cardiac issues, and neurological disorders through various mechanisms. Different clinical investigations have also confirmed the potential beneficial effects of rice bran and rice bran oil in various metabolic and cardiac disease conditions. Modulating gut microbiota is an important mechanism of the beneficial effects exerted by rice bran. This comprehensive review underscores the nutritional and therapeutic value of rice bran, emphasizing its potential for wider adoption to address nutrient deficiencies and improve human health.
米糠是米粒的外层,是碾磨米粒的副产品,具有很高的营养和治疗价值。它富含膳食纤维、维生素、矿物质、多酚和各种抗氧化分子。米糠及其生物分子的健康促进作用已在多项研究中得到证实。在这篇综述中,我们评估了米糠的不同营养和健康促进作用,特别是它对肠道健康和其他与肠道健康相关的慢性疾病的影响。对米糠中存在的生物分子及其潜在的治疗作用进行了综述。本文综述了米糠对多种疾病的潜在治疗和预防作用及其作用机制。米糠是营养物质的重要来源。除了营养价值外,米糠还富含多种生物分子,如花青素、类黄酮、酚类物质、γ-稻谷醇、植物甾醇及其衍生物、饱和脂肪酸、单不饱和脂肪酸和多不饱和脂肪酸。米糠中的膳食纤维在调节肠道菌群、减少炎症和维持肠道健康方面发挥着关键作用。人们发现米糠及其成分通过各种机制对炎症、糖尿病、癌症、肝脏疾病、心脏问题和神经系统疾病具有治疗作用。不同的临床研究也证实了米糠和米糠油对各种代谢和心脏疾病的潜在有益作用。调节肠道菌群是米糠有益作用的重要机制。这项综合综述强调了米糠的营养和治疗价值,强调了其在解决营养缺乏和改善人类健康方面的广泛应用潜力。
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引用次数: 0
Optimized Leaf Morphology and Delayed Senescence Boost Rice Yield via Enhanced Leaf and Canopy Photosynthesis 优化叶片形态和延缓衰老通过增强叶片和冠层光合作用提高水稻产量
2区 农林科学 Q1 AGRONOMY Pub Date : 2026-01-01 DOI: 10.1016/j.rsci.2025.12.005
Ye Miao, Mao Yuxin, Yuan Rong, Zhang Dehai, Zhang Zujian
Four Modern hybrid and four japonica rice varieties differing in biomass, yield, and daily biomass production rate during the grain-filling period (DBP GF ) were used to reveal the eco-physiological photosynthetic characteristics of high-yield and high-efficiency rice. Varietal differences were analyzed in leaf and canopy photosynthetic parameters, associated leaf morphological and anatomical traits (e.g., stomatal density, vein density, mesophyll cell arrangement), as well as differences in canopy light interception and leaf area index, and their effects on yield and biomass accumulation. Hybrid rice with yield higher than 10.5 t/hm 2 and DBP GF higher than 200 kg/(hm 2 ·d), and japonica rice with yield higher than 9.0 t/hm 2 and DBP GF higher than 200 kg/(hm 2 ·d) were classified as high-yield and high-efficiency varieties; the other varieties were considered general varieties. According to this standard, two hybrid and two japonica varieties were categorized as high-yield and high-efficiency types, while the remaining two hybrid and two japonica varieties were classified as general types. Results indicated that high-yield and high-efficiency varieties generally have higher leaf and canopy photosynthesis, superior leaf stomatal, vascular, and mesophyll structures that facilitate CO 2 diffusion and hydraulic transport, higher canopy light transmittance, and slower leaf area attenuation. Rice yield and biomass were positively correlated with photosynthetic parameters and closely linked to associated photosynthetic traits. Efficient rice production attributed to coordinated improvements in leaf structure, canopy architecture, and delayed leaf area attenuation. This study provides important theoretical guidance for breeding high-efficiency rice varieties.
以4个现代杂交稻和4个粳稻品种为材料,研究了不同品种灌浆期生物量、产量和日生物量生产速率的生态生理光合特性。分析了不同品种间叶片和冠层光合参数、叶片相关形态和解剖性状(气孔密度、叶脉密度、叶肉细胞排列)、冠层截光量和叶面积指数的差异及其对产量和生物量积累的影响。将产量大于10.5 t/hm 2、DBP GF大于200 kg/ hm 2·d的杂交稻和产量大于9.0 t/hm 2、DBP GF大于200 kg/ hm 2·d的粳稻列为高产高效品种;其他品种被认为是普通品种。根据该标准,将2个杂交品种和2个粳稻品种划分为高产高效型,其余2个杂交品种和2个粳稻品种划分为一般型。结果表明,高产高效品种叶片和冠层光合作用较高,气孔、维管和叶肉结构更优越,有利于co2扩散和水力输送,冠层透光率更高,叶面积衰减较慢。水稻产量和生物量与光合参数呈正相关,与相关光合性状密切相关。水稻的高效生产归因于叶片结构、冠层结构和延迟叶面积衰减的协调改善。该研究为选育高效水稻品种提供了重要的理论指导。
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引用次数: 0
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Rice Science
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