Pub Date : 2009-10-30DOI: 10.1109/BMEI.2009.5304962
S. Ullah, Daehan Kwak, Cheolhyo Lee, Hyung-Soo Lee, K. Kwak
This paper presents a numerical analysis of a CSMA/CA mechanism for a pattern-based WBAN system. Several equations are derived to observe the number of back-off periods required by high, medium, and low traffic BAN Nodes (BNs). Numerical results show that CSMA/CA mechanism is not suitable for medium and low traffic BNs, and high traffic BNs encounter heavy collision problems. This suggests the use of a TDMA-based solution that can solve a range of problems including traffic heterogeneity and correlation problems.
{"title":"Numerical Analysis of CSMA/CA for Pattern-Based WBAN System","authors":"S. Ullah, Daehan Kwak, Cheolhyo Lee, Hyung-Soo Lee, K. Kwak","doi":"10.1109/BMEI.2009.5304962","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5304962","url":null,"abstract":"This paper presents a numerical analysis of a CSMA/CA mechanism for a pattern-based WBAN system. Several equations are derived to observe the number of back-off periods required by high, medium, and low traffic BAN Nodes (BNs). Numerical results show that CSMA/CA mechanism is not suitable for medium and low traffic BNs, and high traffic BNs encounter heavy collision problems. This suggests the use of a TDMA-based solution that can solve a range of problems including traffic heterogeneity and correlation problems.","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"106 12 1","pages":"1-3"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89740415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2009-10-30DOI: 10.1109/BMEI.2009.5305622
Zhe Zhao, Hongyu Zhou, Lixin Wang
This paper studied on data processing in cooperative software under P2P pattern. It introduced the concrete improvement scheme on data transmission considering the problems of GK-Star model. Transformed the push data model into push-pull model which improved the performance obviously. keyword:P2P Technology �◊ Cooperative Application �◊Cooperative Region �◊Data Processing; data transmission; push data; pull data
{"title":"Analysis and Research on Data Transmission in Cooperative Software under P2P Model","authors":"Zhe Zhao, Hongyu Zhou, Lixin Wang","doi":"10.1109/BMEI.2009.5305622","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5305622","url":null,"abstract":"This paper studied on data processing in cooperative software under P2P pattern. It introduced the concrete improvement scheme on data transmission considering the problems of GK-Star model. Transformed the push data model into push-pull model which improved the performance obviously. keyword:P2P Technology �◊ Cooperative Application �◊Cooperative Region �◊Data Processing; data transmission; push data; pull data","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"67 1","pages":"1-5"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89761392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2009-10-30DOI: 10.1109/BMEI.2009.5305697
Haijun Niu, Lifeng Li, Fengling Ma, F. Pu, Deyu Li, Yubo Fan
It is significant to monitor bladder volume continuously and accurately in many specific clinical conditions or during treatment or management of urological disorders. This study try to explore the dynamic bladder storing process and understand the change of bladder shape and intra-vesical volume under the specific conditions of water-drinking using reconstructed three-dimension (3D) bladder models based on magnetic resonance imaging (MRI). A 3T GE MRI system was used to acquire bladder images while storing in the transverse section. Segmentation of the bladder MRI Image, 3D model reconstruction, and volume measurement in different scan phases were performed with Mimics software. The results showed that the bladder varied from small bowl-like shape to irregular ellipsoid during urinary store. The increase in bladder volume was nonlinear under the specific conditions of water-drinking. The diameter change of the bladder in different directions was inconsistent during urinary store.
在许多特殊的临床条件下或在泌尿系统疾病的治疗或管理过程中，持续准确地监测膀胱容量是非常重要的。本研究试图通过基于磁共振成像(MRI)的重建膀胱三维模型，探索膀胱的动态储存过程，了解特定饮水条件下膀胱形状和膀胱内体积的变化。使用3T GE MRI系统获取膀胱图像，同时存储在横切面上。利用Mimics软件对膀胱MRI图像进行分割、三维模型重建和不同扫描阶段的体积测量。结果表明，膀胱在储尿过程中由小碗状变为不规则椭球状。在特定的饮水条件下，膀胱体积的增加是非线性的。尿潴留过程中不同方向膀胱直径变化不一致。
{"title":"The Study of Nonlinear Change of Bladder During Urinary Store Based on MRI","authors":"Haijun Niu, Lifeng Li, Fengling Ma, F. Pu, Deyu Li, Yubo Fan","doi":"10.1109/BMEI.2009.5305697","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5305697","url":null,"abstract":"It is significant to monitor bladder volume continuously and accurately in many specific clinical conditions or during treatment or management of urological disorders. This study try to explore the dynamic bladder storing process and understand the change of bladder shape and intra-vesical volume under the specific conditions of water-drinking using reconstructed three-dimension (3D) bladder models based on magnetic resonance imaging (MRI). A 3T GE MRI system was used to acquire bladder images while storing in the transverse section. Segmentation of the bladder MRI Image, 3D model reconstruction, and volume measurement in different scan phases were performed with Mimics software. The results showed that the bladder varied from small bowl-like shape to irregular ellipsoid during urinary store. The increase in bladder volume was nonlinear under the specific conditions of water-drinking. The diameter change of the bladder in different directions was inconsistent during urinary store.","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"7 1","pages":"1-4"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89517665","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2009-10-30DOI: 10.1109/BMEI.2009.5305400
Qun Wang, Zhiwen Liu
The pulse waveform characteristic point detection is important for non-invasively detecting cardiovascular parameters. A novel designed algorithm based on wavelet transform (WT) is developed. For some pulse waveforms, characteristic points exactly correspond to the zero-crossing of a wavelet with one vanishing moment, while the others incompletely correspond to. And characteristic points also correspond to the local extrema of a wavelet with two vanishing moment. So an algorithm combining a wavelet with one vanishing moment and another one with two vanishing moment is used to improve the detection rate of characteristic points. The results show that automatic identification of characteristics points has a high rate of accuracy.
{"title":"Detection of the Pulse Waveform Characteristic Points by Wavelet Transform Using Multiscale Differential Operator","authors":"Qun Wang, Zhiwen Liu","doi":"10.1109/BMEI.2009.5305400","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5305400","url":null,"abstract":"The pulse waveform characteristic point detection is important for non-invasively detecting cardiovascular parameters. A novel designed algorithm based on wavelet transform (WT) is developed. For some pulse waveforms, characteristic points exactly correspond to the zero-crossing of a wavelet with one vanishing moment, while the others incompletely correspond to. And characteristic points also correspond to the local extrema of a wavelet with two vanishing moment. So an algorithm combining a wavelet with one vanishing moment and another one with two vanishing moment is used to improve the detection rate of characteristic points. The results show that automatic identification of characteristics points has a high rate of accuracy.","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"14 1","pages":"1-5"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87589241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2009-10-30DOI: 10.1109/BMEI.2009.5305050
Fugui Wang, Lin Hou, Jiangfeng Xu, M. Qian, Minghua Deng
With the increase in genome-wide experiments and sequenced genomes, the analysis of large data sets has become commonplace in biology. It is often the case that thousands of features in a genome-wide data set are tested against null hypotheses, where only a small number of features are expected to be significant. The empirical Bayesian method (EB) is one of the most powerful methods to address such an issue, which has attracted much attention in literature. Here we propose an altered EB method, which is more robust and gives a more reasonable statistical interpretation. Our method is applied on both simulated and real data, and it outperforms the EB method.
{"title":"A Robust Empirical Bayesian Method for Detecting Differentially Expressed Genes","authors":"Fugui Wang, Lin Hou, Jiangfeng Xu, M. Qian, Minghua Deng","doi":"10.1109/BMEI.2009.5305050","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5305050","url":null,"abstract":"With the increase in genome-wide experiments and sequenced genomes, the analysis of large data sets has become commonplace in biology. It is often the case that thousands of features in a genome-wide data set are tested against null hypotheses, where only a small number of features are expected to be significant. The empirical Bayesian method (EB) is one of the most powerful methods to address such an issue, which has attracted much attention in literature. Here we propose an altered EB method, which is more robust and gives a more reasonable statistical interpretation. Our method is applied on both simulated and real data, and it outperforms the EB method.","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"45 1","pages":"1-5"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87806619","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2009-10-30DOI: 10.1109/BMEI.2009.5304840
Zhanli Hu, Hairong Zheng, Jianbao Gui
The development of more flexible and accurate medical image processing technique and platform is important requirement for clinical diagnosis and treatment. A new interactive image processing method is proposed in this work. Using this method, image smoothing, sharpening, histogram processing, pseudo-color processing, segmentation, reading, local amplification and measurement for medical image in DICOM format can be realized. Application of the method for processing human CT image data demonstrated the method is a convenient and flexible approach for medical image processing. This user-friendly image processing technique could be clinically useful to assist image analysis and diagnosis. Keywords-DICOM; medical image; image processing; local amplification
{"title":"A Novel Interactive Image Processing Approach for DICOM Medical Image Data","authors":"Zhanli Hu, Hairong Zheng, Jianbao Gui","doi":"10.1109/BMEI.2009.5304840","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5304840","url":null,"abstract":"The development of more flexible and accurate medical image processing technique and platform is important requirement for clinical diagnosis and treatment. A new interactive image processing method is proposed in this work. Using this method, image smoothing, sharpening, histogram processing, pseudo-color processing, segmentation, reading, local amplification and measurement for medical image in DICOM format can be realized. Application of the method for processing human CT image data demonstrated the method is a convenient and flexible approach for medical image processing. This user-friendly image processing technique could be clinically useful to assist image analysis and diagnosis. Keywords-DICOM; medical image; image processing; local amplification","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"140 1","pages":"1-4"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86661627","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
By summarizing the software development experience and the research on the software methodology, the paper presented a metadata oriented software development method. The practice of this method in the real world software development had been discussed. Meanwhile we compared this method with other methods and pointed out that these methods are interrelated and indivisible. These methods should be used together in software development to facilitate the success of the development. Keywords-Software engineering; Development method; Metadata Oriented
{"title":"Metadata Oriented Software Development Method","authors":"Yiping Jiang, Lianzhong Liu, Wei Lv, Chi-long Zhao","doi":"10.1109/BMEI.2009.5305826","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5305826","url":null,"abstract":"By summarizing the software development experience and the research on the software methodology, the paper presented a metadata oriented software development method. The practice of this method in the real world software development had been discussed. Meanwhile we compared this method with other methods and pointed out that these methods are interrelated and indivisible. These methods should be used together in software development to facilitate the success of the development. Keywords-Software engineering; Development method; Metadata Oriented","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"52 1","pages":"1-3"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76021920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2009-10-30DOI: 10.1109/BMEI.2009.5305187
Mi-Chia Ma, Hsiao-Fang Lin, Ying Xu
Alternative splicing is the RNA splicing variation mechanism. The exon isoforms lead to numerous different expressions through the alternative splicing. It’s imperative to find the carcinogenic gene from the massive quantity of genes and understand the expressed isoforms. In this paper, the statistical procedures are applied on the colon cancer sample data of Affymetrix GeneChip Human Exon 1.0 ST Array and the dataset is used as the example of finding isoforms. First, the Wilcoxon sign rank test was applied to choose the suspect carcinogenic genes. About 54,854 suspect genes are selected from original 312,368 genes at 5% significant level. Second, one sample t-test and the factor analysis are used to estimate the tumor and normal isoforms for each suspect carcinogenic gene, respectively. Furthermore, the confirmations are made by comparing the estimated results with Alternative Splicing Database. Finally, the results may be provided to the biologist to make biological confirmations and discover the new isoforms. Keywords-alternative splicing; exon array; colon cancer; isoform
选择性剪接是RNA剪接变异机制。外显子异构体通过选择性剪接导致许多不同的表达。从大量的基因中找到致癌基因并了解其表达的同工型是当务之急。本文将统计程序应用于Affymetrix GeneChip Human Exon 1.0 ST Array的结肠癌样本数据，并以该数据集为例进行同种异构体的发现。首先，采用Wilcoxon符号秩检验选择可疑致癌基因。从原始的312368个基因中，以5%的显著性水平筛选出54854个可疑基因。其次，使用单样本t检验和因子分析分别估计每个可疑致癌基因的肿瘤和正常亚型。并将估计结果与Alternative Splicing Database进行了比较。最后，这些结果可以提供给生物学家进行生物学确认和发现新的异构体。Keywords-alternative拼接;外显子数组;结肠癌;同种型
{"title":"Detect the Different Isoforms Using GeneChip Human Exon 1.0 ST Arrays","authors":"Mi-Chia Ma, Hsiao-Fang Lin, Ying Xu","doi":"10.1109/BMEI.2009.5305187","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5305187","url":null,"abstract":"Alternative splicing is the RNA splicing variation mechanism. The exon isoforms lead to numerous different expressions through the alternative splicing. It’s imperative to find the carcinogenic gene from the massive quantity of genes and understand the expressed isoforms. In this paper, the statistical procedures are applied on the colon cancer sample data of Affymetrix GeneChip Human Exon 1.0 ST Array and the dataset is used as the example of finding isoforms. First, the Wilcoxon sign rank test was applied to choose the suspect carcinogenic genes. About 54,854 suspect genes are selected from original 312,368 genes at 5% significant level. Second, one sample t-test and the factor analysis are used to estimate the tumor and normal isoforms for each suspect carcinogenic gene, respectively. Furthermore, the confirmations are made by comparing the estimated results with Alternative Splicing Database. Finally, the results may be provided to the biologist to make biological confirmations and discover the new isoforms. Keywords-alternative splicing; exon array; colon cancer; isoform","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"6 1","pages":"1-5"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"78614762","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2009-10-30DOI: 10.1109/BMEI.2009.5305321
Chung-Yuan Chen, Hsiu-Li Hsieh, Chia-Hsien Lin, S. Liao, T. Sun, C. Ching, Po-Liang Liu
H + -ion concentration into digital form. This chip, fabricated in a 0.18-um CMOS 1P6M process, operated at a 1.8V supply voltage and normal sampling rate of 6.25MHz. The circuit (without pad) occupied an area of 0.66mm × 0.43mm. The experimental data showed that this structure has a linear pH response about 97 digital counts/pH in the ion concentration range between pH2 and pH12, and the gain errors within the H + -ion concentrations are less than 3%. The minimum detectable pH value can reach as small as ±0.25pH.
H +离子浓度转化为数字形式。该芯片采用0.18 um CMOS 1P6M工艺，工作在1.8V电源电压下，正常采样率为6.25MHz。电路(不含焊盘)的面积为0.66mm × 0.43mm。实验数据表明，该结构在pH2 ~ pH12离子浓度范围内具有97个数字计数/pH左右的线性pH响应，且在H +离子浓度范围内的增益误差小于3%。最小可检测pH值可小至±0.25pH。
{"title":"Extended Gate H+-Ion Sensitive Field Effect Transistor with Signal Interface","authors":"Chung-Yuan Chen, Hsiu-Li Hsieh, Chia-Hsien Lin, S. Liao, T. Sun, C. Ching, Po-Liang Liu","doi":"10.1109/BMEI.2009.5305321","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5305321","url":null,"abstract":"H + -ion concentration into digital form. This chip, fabricated in a 0.18-um CMOS 1P6M process, operated at a 1.8V supply voltage and normal sampling rate of 6.25MHz. The circuit (without pad) occupied an area of 0.66mm × 0.43mm. The experimental data showed that this structure has a linear pH response about 97 digital counts/pH in the ion concentration range between pH2 and pH12, and the gain errors within the H + -ion concentrations are less than 3%. The minimum detectable pH value can reach as small as ±0.25pH.","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"108 1","pages":"1-4"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79725071","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2009-10-30DOI: 10.1109/BMEI.2009.5305749
Yongchun Zuo, Qianzhong Li
Promoter identification is the first and the most important step for understanding gene transcription regulation. In this study, one new information content feature, the subsequence increment of overlapping content diversity (IOCD), is firstly presented to describe the subsequence content of plant poll-Ⅱ promoter. The negative datasets include five different regions of Arabidopsis thaliana complete genomes, Codings, Introns, Intergenics, 5'untranslation regions (UTRs) and 3' untranslation regions (UTRs). The prediction capacity of our algorithm is tested by 10-fold cross validation test based on K- mer IOCD. The results show that the IOCD can describe the promoter sequence content well. Further, based on the interval distances between transcription start site (TSS) and translation initiation site (TIS), the method is applied to search the complete genomes of Arabidopsis thaliana and more than ten thousand probable promoters are founded.
启动子鉴定是了解基因转录调控的第一步，也是最重要的一步。本文首次提出了一种新的信息内容特征——重叠内容多样性子序列增量(IOCD)来描述植物poll-Ⅱ启动子的子序列内容。阴性数据集包括拟南芥全基因组的5个不同区域、编码区、内含子、间基因区、5′非翻译区和3′非翻译区。通过基于K- mer IOCD的10次交叉验证测试，验证了算法的预测能力。结果表明，IOCD能较好地描述启动子序列的内容。进一步，基于转录起始位点(TSS)和翻译起始位点(TIS)之间的间隔距离，将该方法应用于拟南芥全基因组的搜索，发现了1万多个可能的启动子。
{"title":"Predicting Plant Pol-II Promoter Based on Subsequence Increment of Overlap Content Diversity","authors":"Yongchun Zuo, Qianzhong Li","doi":"10.1109/BMEI.2009.5305749","DOIUrl":"https://doi.org/10.1109/BMEI.2009.5305749","url":null,"abstract":"Promoter identification is the first and the most important step for understanding gene transcription regulation. In this study, one new information content feature, the subsequence increment of overlapping content diversity (IOCD), is firstly presented to describe the subsequence content of plant poll-Ⅱ promoter. The negative datasets include five different regions of Arabidopsis thaliana complete genomes, Codings, Introns, Intergenics, 5'untranslation regions (UTRs) and 3' untranslation regions (UTRs). The prediction capacity of our algorithm is tested by 10-fold cross validation test based on K- mer IOCD. The results show that the IOCD can describe the promoter sequence content well. Further, based on the interval distances between transcription start site (TSS) and translation initiation site (TIS), the method is applied to search the complete genomes of Arabidopsis thaliana and more than ten thousand probable promoters are founded.","PeriodicalId":6389,"journal":{"name":"2009 2nd International Conference on Biomedical Engineering and Informatics","volume":"56 1","pages":"1-5"},"PeriodicalIF":0.0,"publicationDate":"2009-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83923337","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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