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Isolation, characterization, and genomic analysis of Bacillus halotolerans C1 as a robust alkaline protease source. 碱性蛋白酶源耐盐芽孢杆菌C1的分离、鉴定和基因组分析。
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-08 DOI: 10.1007/s13205-025-04661-3
Maryam Rezvani, Aboozar Soorni, Mohammad Sedghi
<p><p>Proteases constitute a major class of industrial enzymes, with alkaline proteases garnering significant interest due to their catalytic efficiency and stability under alkaline conditions, which are paramount for applications in detergents, waste treatment, and bioremediation. The escalating demand for biocatalysts that maintain functionality under polyextremophilic conditions, such as concurrent high temperature, alkaline pH, and organic solvents, drives the exploration of microbial diversity in underexplored ecological niches. In this study, we report the isolation and multi-faceted characterization of <i>Bacillus halotolerans</i> strain C1, a novel isolate from Iranian extreme environments, exhibiting exceptional alkaline protease production. Through a rigorous screening of 70 bacterial isolates, strain C1 was selected as the superior protease producer based on both qualitative and quantitative analyses. The protease was partially purified to homogeneity via ammonium sulfate precipitation and gel filtration chromatography, yielding a single band on SDS-PAGE corresponding to a molecular mass of approximately 27 kDa. The enzyme demonstrated a remarkably high specific activity of 5300 U/g. Biochemical profiling revealed unparalleled stability, retaining significant activity across a broad pH spectrum (5.0-11.0) and a wide thermal range (40-90 °C), with optimum activity observed at pH 7.0 and 70 °C (7299.67 U/g). Whole-genome sequencing unveiled a 4.121 Mb circular chromosome encoding 4121 predicted coding sequences. Comparative genomic analysis confirmed species-level identity as <i>B. halotolerans</i> (dDDH value > 98%), and identified a subtilisin-like serine protease gene (aprE) exhibiting 100% amino acid identity to its <i>B. subtilis</i> homolog, yet residing within a unique genomic locus. Notably, genome mining elucidated 12 biosynthetic gene clusters (BGCs) for secondary metabolites, including nonribosomal peptide synthetases (NRPS) for fengycin, bacillaene, and the siderophore bacillibactin, alongside two distinct bacteriocin clusters encoding the sactipeptide subtilosin A and a novel class IV lanthipeptide. Concurrently, antimicrobial resistance (AMR) profiling identified genes conferring resistance to multiple drug classes, including macrolides (mphK), rifamycins (rphB), and cationic antimicrobial peptides (mprF), mediated through efflux pumps (ykkCD, bmr) and ribosomal protection proteins (vmlR). Critically, the co-localization of these stress-responsive elements with the protease-coding region suggests a genetically encoded, coordinated adaptive strategy to environmental extremism. Our findings posit <i>B. halotolerans</i> C1 as a formidable source of a robust, multi-tolerant alkaline protease and provide a comprehensive genomic blueprint that underscores the imperative of integrating phenotyping with genomic mining for the discovery and rational engineering of next-generation industrial biocatalysts.</p><p><strong>Supplementary
蛋白酶是一类主要的工业酶,碱性蛋白酶因其在碱性条件下的催化效率和稳定性而引起了人们的极大兴趣,这在洗涤剂、废物处理和生物修复方面的应用至关重要。在高温、碱性pH和有机溶剂等多极端环境下维持功能的生物催化剂的需求不断增加,推动了对未开发生态位中微生物多样性的探索。在这项研究中,我们报道了嗜盐芽孢杆菌C1菌株的分离和多方面的特性,这是一种来自伊朗极端环境的新菌株,具有特殊的碱性蛋白酶生产能力。通过对70株菌株的严格筛选,通过定性和定量分析,选择菌株C1为较好的蛋白酶产生菌。通过硫酸铵沉淀和凝胶过滤层析将蛋白酶部分纯化到均匀性,在SDS-PAGE上得到一个分子质量约为27 kDa的单条带。该酶的比活性高达5300 U/g。生化分析显示出无与伦比的稳定性,在广泛的pH范围(5.0-11.0)和广泛的热范围(40-90°C)内保持显著的活性,在pH 7.0和70°C (7299.67 U/g)下观察到最佳活性。全基因组测序发现一条4.121 Mb的环状染色体,编码4121个预测编码序列。比较基因组分析证实了物种水平上的同源性(dDDH值为bb0 98%),并鉴定了一个枯草杆菌样丝氨酸蛋白酶基因(aprE),其氨基酸同源性与枯草杆菌同源性100%相同,但位于一个独特的基因组位点。值得注意的是,基因组挖掘发现了12个次生代谢产物的生物合成基因簇(bgc),包括凤霉素、杆菌烯和铁载体杆菌肽的非核糖体肽合成酶(NRPS),以及两个不同的细菌素簇,编码肽subtilosin A和一种新型IV类硫肽。同时,抗菌素耐药性(AMR)分析鉴定了对多种药物具有耐药性的基因,包括大环内酯类药物(mphK)、利福霉素(rphB)和阳离子抗菌肽(mprF),通过外排泵(ykkCD、bmr)和核糖体保护蛋白(vmlR)介导。至关重要的是,这些应激反应元件与蛋白酶编码区域的共定位表明,对环境极端主义有一种遗传编码的协调适应策略。我们的研究结果表明耐盐芽孢杆菌C1是一种强大的、多耐受性碱性蛋白酶的强大来源,并提供了一个全面的基因组蓝图,强调了将表型分析与基因组挖掘结合起来发现和合理设计下一代工业生物催化剂的必要性。补充信息:在线版本包含补充资料,可在10.1007/s13205-025-04661-3获得。
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引用次数: 0
Recent advances in microbial production of nutraceuticals: a sustainable approach. 营养品微生物生产的最新进展:一种可持续的方法。
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-08 DOI: 10.1007/s13205-025-04626-6
Dong Zhang, Anying Ji, Ruixi Yu, Pengfei Jiang, Feiteng Sun, Ninghan Feng

Nutraceuticals, a significant category of bioactive compounds, play a crucial role in promoting human health and preventing diseases. The expanding market for nutraceuticals is largely driven by heightened public health awareness. However, conventional production methods fall short in meeting the rapidly growing market demand. Unlike chemical synthesis or plant extraction, microbial cell factories offer a sustainable and increasingly prominent alternative for nutraceutical production. Various microbial systems, such as Escherichia coli, Bacillus subtilis, Corynebacterium glutamicum, and Saccharomyces cerevisiae, have been engineered as multifunctional cell factories to synthesize diverse nutraceuticals. This review systematically summarizes the biosynthesis of various nutraceuticals using microbial cell factories, including vitamins, polysaccharides, and flavonoids. Additionally, it examines current challenges in this field, along with potential solutions and future prospects. Collectively, microbial cell factories are pioneering sustainable approaches to address pressing global health demands.

营养保健品是一类重要的生物活性化合物,在促进人体健康和预防疾病方面发挥着至关重要的作用。保健品市场的扩大主要是由于公众健康意识的提高。然而,传统的生产方法无法满足快速增长的市场需求。与化学合成或植物提取不同,微生物细胞工厂为营养品生产提供了可持续和日益突出的替代方案。各种微生物系统,如大肠杆菌、枯草芽孢杆菌、谷氨酸棒状杆菌和酿酒酵母,已经被设计成多功能细胞工厂来合成各种营养药品。本文系统地综述了利用微生物细胞工厂合成各种营养品的研究进展,包括维生素、多糖和类黄酮。此外,它还探讨了该领域当前面临的挑战,以及潜在的解决方案和未来前景。总的来说,微生物细胞工厂是解决紧迫的全球健康需求的可持续方法的先驱。
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引用次数: 0
Therapeutic ambitions, diagnostic advantages, and functional divergence of pancreatic cancer-derived exosomes towards optimized disease management. 胰腺癌衍生外泌体的治疗目标、诊断优势和功能分化对优化疾病管理的影响。
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-08 DOI: 10.1007/s13205-025-04642-6
Taba Jirpu, Api Talom, Bikram Dawn, Arnab Ghosh

Pancreatic ductal adenocarcinoma (PDAC) accounts for 90% of pancreatic cancer (PC). The inefficient early detection and screening methods make PDAC the fourth deadliest cancer worldwide. The adjuvant and neoadjuvant therapies can manage the disease, but often with very low efficacy, resulting in a low 5-year survival rate of just 12%. Site-specific drug targeting and more precise early detection could be the way forward. Biological vehicles, like exosomes, a type of extracellular vesicle, play a crucial role in the development and metastasis of various types of cancer, including PC. By nature, exosomes are nano-sized vesicles secreted by most cells, including cancer cells. They carry biologically active molecules that facilitate cell-cell communication and signaling and are specific for each type of cancer, including PDACs. These PC-secreted exosomes have a unique molecular signature that is being investigated for PC diagnosis. Additionally, these vesicles could be engineered biologically, chemically, and immunologically to identify and target PC-affected sites for site-specific drug delivery. The strategic payload delivery capability of exosomes enhances the bioavailability and specificity of chemotherapeutic drugs. However, significant challenges remain in the clinical application of exosomes as drug carriers and biomarkers. This review summarizes the current understanding of the role of exosomes in PC development, contribution to metastasis, immunomodulation, and chemoresistance in PC. It emphasizes the therapeutic potential in tune with site-specific drug delivery and diagnostic applications of exosome-associated molecular signatures in PC detection.

胰腺导管腺癌(PDAC)占胰腺癌(PC)的90%。低效的早期检测和筛查方法使PDAC成为全球第四大致命癌症。辅助和新辅助治疗可以控制疾病,但通常疗效很低,导致5年生存率很低,只有12%。特定部位的药物靶向和更精确的早期检测可能是前进的方向。生物载体,如外泌体,一种细胞外囊泡,在包括PC在内的各种癌症的发生和转移中起着至关重要的作用。从本质上讲,外泌体是大多数细胞(包括癌细胞)分泌的纳米级囊泡。它们携带生物活性分子,促进细胞间的交流和信号传递,并且对每种类型的癌症都有特异性,包括pdac。这些PC分泌的外泌体具有独特的分子特征,正在研究用于PC诊断。此外,这些囊泡可以在生物学、化学和免疫学上进行工程设计,以识别和靶向pc受影响的部位,以进行特定部位的药物递送。外泌体的策略性有效载荷递送能力提高了化疗药物的生物利用度和特异性。然而,外泌体作为药物载体和生物标志物的临床应用仍面临重大挑战。本文综述了外泌体在前列腺癌的发展、转移、免疫调节和化疗耐药中的作用。它强调了治疗潜力与位点特异性药物传递和外泌体相关分子特征在PC检测中的诊断应用。
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引用次数: 0
Microarray analysis for transcriptomic profiling in neuroscience: uncovering key molecular mechanisms and candidate biomarkers in Alzheimer's disease. 神经科学转录组谱的微阵列分析:揭示阿尔茨海默病的关键分子机制和候选生物标志物。
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2026-01-05 DOI: 10.1007/s13205-025-04645-3
Amin Jalilvand

Alzheimer's disease (AD) is a progressive neurodegenerative disorder that leads to cognitive decline, memory loss, and neuronal damage. Advances in high-throughput technologies, such as microarrays, have significantly enhanced our understanding of complex diseases by enabling large-scale gene expression analysis. This study explores differentially expressed genes (DEGs), key hub genes, and dysregulated pathways in AD using the GSE118553 dataset, aiming to uncover potential biomarkers and therapeutic targets. Gene expression data from AD and control brain tissues were analyzed to identify DEGs. A protein-protein interaction (PPI) network was constructed to determine hub genes, followed by subnetwork and co-expression analyses. Functional enrichment analysis, including Gene Set Enrichment Analysis (GSEA), was performed to examine the biological pathways involved in AD. A total of 108 DEGs were identified, including 79 upregulated and 29 downregulated genes. Among these, 15 hub genes (FOS, CD44, THBS1, CCL2, HSPA1A, HSPA1B, FGF2, COL6A3, KLF4, CD74, DNAJB1, HSPA6, SPARC, YAP1, and BAG3) were significantly dysregulated. Functional enrichment analysis revealed key pathways related to heat acclimation, inclusion body regulation, and protein homeostasis. Additionally, potential therapeutic strategies were proposed to target these pathways and slow AD progression. This study identified crucial hub genes and dysregulated pathways in AD, with COL6A3 and BAG3 emerging as novel candidate genes. These findings provide deeper insights into the molecular mechanisms underlying AD and suggest potential therapeutic targets. Future research should focus on validating these findings and developing targeted interventions to regulate the identified pathways.

Supplementary information: The online version contains supplementary material available at 10.1007/s13205-025-04645-3.

阿尔茨海默病(AD)是一种进行性神经退行性疾病,会导致认知能力下降、记忆丧失和神经元损伤。微阵列等高通量技术的进步,通过大规模基因表达分析,大大提高了我们对复杂疾病的理解。本研究利用GSE118553数据集探索AD中的差异表达基因(DEGs)、关键枢纽基因和失调通路,旨在发现潜在的生物标志物和治疗靶点。分析AD和对照脑组织的基因表达数据以鉴定deg。构建蛋白-蛋白相互作用(PPI)网络,确定中心基因,然后进行子网络和共表达分析。功能富集分析,包括基因集富集分析(GSEA),用于检查AD参与的生物学途径。共鉴定出108个基因,其中上调基因79个,下调基因29个。其中,15个中心基因(FOS、CD44、THBS1、CCL2、HSPA1A、HSPA1B、FGF2、COL6A3、KLF4、CD74、DNAJB1、HSPA6、SPARC、YAP1和BAG3)显著失调。功能富集分析揭示了与热驯化、包涵体调节和蛋白质稳态相关的关键途径。此外,研究人员还提出了针对这些途径和减缓AD进展的潜在治疗策略。该研究确定了AD的关键枢纽基因和失调通路,COL6A3和BAG3成为新的候选基因。这些发现为阿尔茨海默病的分子机制提供了更深入的见解,并提出了潜在的治疗靶点。未来的研究应侧重于验证这些发现,并制定有针对性的干预措施来调节已确定的途径。补充信息:在线版本包含补充资料,下载地址:10.1007/s13205-025-04645-3。
{"title":"Microarray analysis for transcriptomic profiling in neuroscience: uncovering key molecular mechanisms and candidate biomarkers in Alzheimer's disease.","authors":"Amin Jalilvand","doi":"10.1007/s13205-025-04645-3","DOIUrl":"https://doi.org/10.1007/s13205-025-04645-3","url":null,"abstract":"<p><p>Alzheimer's disease (AD) is a progressive neurodegenerative disorder that leads to cognitive decline, memory loss, and neuronal damage. Advances in high-throughput technologies, such as microarrays, have significantly enhanced our understanding of complex diseases by enabling large-scale gene expression analysis. This study explores differentially expressed genes (DEGs), key hub genes, and dysregulated pathways in AD using the GSE118553 dataset, aiming to uncover potential biomarkers and therapeutic targets. Gene expression data from AD and control brain tissues were analyzed to identify DEGs. A protein-protein interaction (PPI) network was constructed to determine hub genes, followed by subnetwork and co-expression analyses. Functional enrichment analysis, including Gene Set Enrichment Analysis (GSEA), was performed to examine the biological pathways involved in AD. A total of 108 DEGs were identified, including 79 upregulated and 29 downregulated genes. Among these, 15 hub genes (<i>FOS</i>, <i>CD44</i>, <i>THBS1</i>, <i>CCL2</i>, <i>HSPA1A</i>, <i>HSPA1B</i>, <i>FGF2</i>, <i>COL6A3</i>, <i>KLF4</i>, <i>CD74</i>, <i>DNAJB1</i>, <i>HSPA6</i>, <i>SPARC</i>, <i>YAP1</i>, and <i>BAG3</i>) were significantly dysregulated. Functional enrichment analysis revealed key pathways related to heat acclimation, inclusion body regulation, and protein homeostasis. Additionally, potential therapeutic strategies were proposed to target these pathways and slow AD progression. This study identified crucial hub genes and dysregulated pathways in AD, with <i>COL6A3</i> and <i>BAG3</i> emerging as novel candidate genes. These findings provide deeper insights into the molecular mechanisms underlying AD and suggest potential therapeutic targets. Future research should focus on validating these findings and developing targeted interventions to regulate the identified pathways.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s13205-025-04645-3.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"16 1","pages":"44"},"PeriodicalIF":2.9,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12770179/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145916594","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Eco-friendly synthesis, characterization of zinc oxide nanoparticles from Ecbolium viride and its multifunctional bioactivities in antioxidant, anti-inflammatory, anti-diabetic, and anticancer applications. 绿虫氧化锌纳米颗粒的生态合成、表征及其在抗氧化、抗炎、抗糖尿病和抗癌等方面的多功能生物活性。
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-19 DOI: 10.1007/s13205-025-04650-6
Sidhan Nandhini, Kuppusamy Selvam, Muthugounder Subaramanian Shivakumar, Ramachandran Adhavan, Mathiazhakan Lavanya

The Ecbolium viride was used to synthesis the zinc oxide nanoparticles (ZnO NPs). From this work, the synthesized NPs were characterized through range of analytical techniques. FTIR was used to detect the presence of functional groups such as alcohol, ester, aromatic compound, conjugated anhydrate, and alkene, these functional groups are responsible for the nanoparticle synthesis. X-ray diffraction analysis (XRD) confirmed a hexagonal wurtzite crystal structure ofthe ZnO NPs. Scanning Electron Microscopy (SEM) images displayed aggregated spherical-shaped NPs, with an elemental composition of oxygen (28.43%) and zinc (71.57%). ZnO NPs exhibited strong antioxidant activity. The α-amylase inhibition assay showed a 72% of inhibition, which indicating NPs potential anti-diabetic activity. Furthermore, the ZnO NPs exhibited anticancer activity against HeLa cells, with a 46.67% of reduction in cell viability. Additionally,the photocatalytic degradation percentage of methylene blue is 86.58% and Rhodamine b is 80%. These findings suggest that ZnO NPs synthesized using E. viride have promising antioxidant, anti-diabetic, and anticancer properties. The green synthesis approach reduce the hazardous waste materials and enhance the therapeutic potentials. .

以绿石为原料合成氧化锌纳米颗粒。在此基础上,通过一系列分析技术对合成的NPs进行了表征。FTIR检测了纳米颗粒中是否存在醇、酯、芳香族化合物、共轭无水化合物和烯烃等官能团,这些官能团是纳米颗粒合成的关键。x射线衍射分析(XRD)证实ZnO纳米粒子为六方纤锌矿晶体结构。扫描电镜(SEM)图像显示聚集的球形NPs,元素组成为氧(28.43%)和锌(71.57%)。ZnO NPs表现出较强的抗氧化活性。α-淀粉酶抑制率为72%,表明NPs具有潜在的抗糖尿病活性。此外,ZnO NPs对HeLa细胞表现出抗癌活性,细胞活力降低46.67%。亚甲基蓝光催化降解率为86.58%,罗丹明b光催化降解率为80%。这些研究结果表明,利用绿芽孢杆菌合成的ZnO NPs具有良好的抗氧化、抗糖尿病和抗癌性能。绿色合成方法减少了有害废物,提高了治疗潜力。
{"title":"Eco-friendly synthesis, characterization of zinc oxide nanoparticles from <i>Ecbolium viride</i> and its multifunctional bioactivities in antioxidant, anti-inflammatory, anti-diabetic, and anticancer applications.","authors":"Sidhan Nandhini, Kuppusamy Selvam, Muthugounder Subaramanian Shivakumar, Ramachandran Adhavan, Mathiazhakan Lavanya","doi":"10.1007/s13205-025-04650-6","DOIUrl":"https://doi.org/10.1007/s13205-025-04650-6","url":null,"abstract":"<p><p>The <i>Ecbolium viride</i> was used to synthesis the zinc oxide nanoparticles (ZnO NPs). From this work, the synthesized NPs were characterized through range of analytical techniques. FTIR was used to detect the presence of functional groups such as alcohol, ester, aromatic compound, conjugated anhydrate, and alkene, these functional groups are responsible for the nanoparticle synthesis. X-ray diffraction analysis (XRD) confirmed a hexagonal wurtzite crystal structure ofthe ZnO NPs. Scanning Electron Microscopy (SEM) images displayed aggregated spherical-shaped NPs, with an elemental composition of oxygen (28.43%) and zinc (71.57%). ZnO NPs exhibited strong antioxidant activity. The α-amylase inhibition assay showed a 72% of inhibition, which indicating NPs potential anti-diabetic activity. Furthermore, the ZnO NPs exhibited anticancer activity against HeLa cells, with a 46.67% of reduction in cell viability. Additionally,the photocatalytic degradation percentage of methylene blue is 86.58% and Rhodamine b is 80%. These findings suggest that ZnO NPs synthesized using <i>E. viride</i> have promising antioxidant, anti-diabetic, and anticancer properties. The green synthesis approach reduce the hazardous waste materials and enhance the therapeutic potentials. .</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"16 1","pages":"29"},"PeriodicalIF":2.9,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12717322/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145802840","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
From concept to simulations: computational and experimental assessment of thiadiazole-thiazolidinone hybrid chalcones for anti-alzheimer potentials. 从概念到模拟:噻二唑-噻唑烷酮杂化查尔酮抗阿尔茨海默病潜能的计算和实验评估。
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-29 DOI: 10.1007/s13205-025-04648-0
Muhammad Bilal Khan, Shoaib Khan, Tayyiaba Iqbal, Sampath Chinnam, Eman Alzahrani, Sobhi M Gomha, Magdi E A Zaki, Kayumov Khasan Yusuf Ogli

A novel series of thiadiazole-linked thiazolidinone-chalcone derivatives was synthesized and comprehensively evaluated for their inhibitory potential against acetylcholinesterase (AChE) and butyrylcholinesterase (BChE). Structural characterization was confirmed through 1H-NMR, 13C-NMR, and HREI-MS analyses. Among the synthesized compounds, analog 10 exhibited the most potent inhibitory activity with IC50 values of 3.10 ± 0.20 µM (AChE) and 3.80 ± 0.20 µM (BChE), surpassing the standard drug donepezil (IC50 = 5.50 ± 0.10 µM and 6.10 ± 0.20 µM, respectively). Other analogs demonstrated moderate to good activity within the range of 3.10-15.60 µM. In silico analyses, including molecular docking, pharmacophore modeling, molecular dynamics simulations, DFT calculations, and ADMET profiling, supported the experimental results and revealed stable binding conformations and favorable drug-like properties. The strong correlation between computational predictions and experimental data validated the proposed structure-activity relationship. These findings highlight compound 10 as a promising lead molecule for further optimization and development of effective and safe cholinesterase inhibitors for Alzheimer's disease therapy.

Supplementary information: The online version contains supplementary material available at 10.1007/s13205-025-04648-0.

合成了一系列新的噻二唑类噻唑烷酮查尔酮衍生物,并对其对乙酰胆碱酯酶(AChE)和丁基胆碱酯酶(BChE)的抑制潜力进行了综合评价。结构表征通过1H-NMR, 13C-NMR和HREI-MS分析确认。在所合成的化合物中,类似物10的抑制活性最强,IC50值分别为3.10±0.20µM (AChE)和3.80±0.20µM (BChE),超过了标准药物多奈哌齐(IC50分别为5.50±0.10µM和6.10±0.20µM)。其他类似物在3.10-15.60µM范围内表现出中等至良好的活性。包括分子对接、药效团建模、分子动力学模拟、DFT计算和ADMET分析在内的计算机分析支持了实验结果,并揭示了稳定的结合构象和良好的药物样性质。计算预测和实验数据之间的强相关性验证了所提出的构效关系。这些发现突出了化合物10作为一个有希望的先导分子,可以进一步优化和开发有效和安全的胆碱酯酶抑制剂,用于阿尔茨海默病的治疗。补充资料:在线版本包含补充资料,下载地址:10.1007/s13205-025-04648-0。
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引用次数: 0
Correction: Exploring the spectrum of heroin-induced changes in the rat brain. 更正:探索海洛因在大鼠大脑中引起的变化。
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-08 DOI: 10.1007/s13205-025-04629-3
Proushat Shirvani, Paniz Shirvani, Seyed Mohammadmisagh Moteshakereh, Zahrasadat Lajevardi, Seyedeh Naghmeh Nourirad, Nahal Babaeian Amini, Zahra Niakan, Siavash Parvardeh, Amir-Hossein Bayat, Ramtin Hajibeygi, Kimia Vakili, Fetemeh Navaei, Mohammad Mahdi Mehrabi, Sina Dolatshahi, Hossein Salehi Omran, Mojtaba Sani, Meysam Hassani Moghaddam, Abbas Aliaghaei

[This corrects the article DOI: 10.1007/s13205-025-04387-2.].

[这更正了文章DOI: 10.1007/s13205-025-04387-2]。
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引用次数: 0
Exploring the comprehensive ROS defense toolbox of selected marine cyanobacteria under hydrogen peroxide stress. 探索过氧化氢胁迫下海洋蓝藻的综合ROS防御工具箱。
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2026-01-05 DOI: 10.1007/s13205-025-04667-x
J Mohammed Hussain, P Muruganantham, Khaleel Ahamed Abdul Kareem, G Jeevanantham, R Sabitha

The present study elucidates the oxidative stress response mechanisms of two marine cyanobacterial species, Phormidium sp. JMC111 and Microcoleus acutissimus, when exposed to hydrogen peroxide (H₂O₂). Both species tolerated short-term H₂O₂ stress up to 60 min, exhibiting significant biochemical and enzymatic adaptations. Statistical analysis revealed a steady decline in chlorophyll content and degradation efficiency over time, with M. acutissimus maintaining higher resilience compared to Phormidium sp. JMC111. Non-enzymatic antioxidants such as carotenoids, β-carotene, tocopherol, and astaxanthin remained elevated, suggesting a strong photoprotective and radical-scavenging defense, while ascorbic acid and phycobiliproteins declined under prolonged stress. Two-way ANOVA confirmed significant time- and species-dependent variations (p < 0.05) in antioxidant responses. Enzymatic assays on native PAGE revealed distinct isoform patterns of SOD, CAT, POD, and GPx, with the appearance of novel peroxidase and catalase isoforms under oxidative stress-reported here for the first time in marine cyanobacteria. These findings demonstrate that both cyanobacteria possess a dynamic and coordinated ROS defense network, with M. acutissimus showing superior antioxidative stability. The study identifies POD and CAT as reliable biochemical indicators of oxidative stress, establishing Phormidium sp. JMC111 as a potential biomonitor species for environmental oxidative assessment.

本研究阐明了两种海洋蓝藻Phormidium sp. JMC111和Microcoleus acutissimus在过氧化氢(h2o2)作用下的氧化应激反应机制。这两个物种都能耐受长达60分钟的短期H₂O₂胁迫,表现出显著的生化和酶适应。统计分析显示,随着时间的推移,叶绿素含量和降解效率稳步下降,与Phormidium sp. JMC111相比,针叶草保持了更高的恢复能力。非酶促抗氧化剂,如类胡萝卜素、β-胡萝卜素、生育酚和虾青素仍然升高,表明有强大的光保护和自由基清除防御,而抗坏血酸和藻胆蛋白在长期应激下下降。双向方差分析证实了显著的时间和物种依赖性变化。针叶具有优异的抗氧化稳定性。本研究确定了POD和CAT是氧化应激可靠的生化指标,确立了Phormidium sp. JMC111作为环境氧化评价的潜在生物监测物种。
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引用次数: 0
Zero-waste biotechnological approach: bioremediation of oxytetracycline and congo red using Chlorella vulgaris biomass with subsequent biodiesel recovery. 零废弃物的生物技术方法:利用小球藻生物质对土霉素和刚果红进行生物修复,然后回收生物柴油。
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2026-01-05 DOI: 10.1007/s13205-025-04601-1
Alaa Elmesery, Rehab Mahmoud, Heba A Younes, Amal Zaher, Sarah I Othman, Ahmed A Allam, Liyuan Hou, Mostafa E Elshobary

The release of pharmaceutical and synthetic dye pollutants into aquatic ecosystems presents a significant environmental concern due to their toxicity, persistence, and potential to promote antimicrobial resistance. This study aimed to assess the potential of Chlorella vulgaris for bioremediating Congo Red (CR), a toxic azo dye, and oxytetracycline (OTC), a commonly used antibiotic. Chlorella vulgaris was characterized before and after adsorption using different techniques such as FTIR, SEM and XRD. The optimal removal conditions were determined by using the batch adsorption method to investigate various parameters, including pH, initial contaminant concentration, biomass dosage, and contact time. Adsorption isotherms and kinetics were best fitted using Langmuir and pseudo-second-order models, with maximum adsorption capacities reaching 75.26 mg/g for CR and 69.55 mg/g for OTC. The spent biomass was successfully converted to biodiesel via transesterification, with GC analysis showing a high content of palmitic acid methyl esters. The economic evaluation estimated a biomass production cost of USD 1.16/g, while green chemistry metrics confirmed the environmental sustainability of the process. These findings support the feasibility of using C. vulgaris as a dual-purpose system for phycoremediation and biofuel production.

药物和合成染料污染物释放到水生生态系统中,由于其毒性、持久性和促进抗菌素耐药性的潜力,引起了重大的环境问题。本研究旨在评估普通小球藻对有毒偶氮染料刚果红(CR)和常用抗生素土霉素(OTC)进行生物修复的潜力。采用红外光谱(FTIR)、扫描电镜(SEM)和x射线衍射(XRD)等不同技术对普通小球藻吸附前后进行了表征。通过考察pH、初始污染物浓度、生物质投加量、接触时间等参数,采用间歇吸附法确定了最佳去除条件。采用Langmuir和拟二阶模型拟合吸附等温线和动力学,CR的最大吸附量为75.26 mg/g, OTC的最大吸附量为69.55 mg/g。废生物质通过酯交换反应成功转化为生物柴油,GC分析显示棕榈酸甲酯含量高。经济评估估计生物质生产成本为1.16美元/克,而绿色化学指标证实了该过程的环境可持续性。这些发现支持了将C. vulgaris用作植物修复和生物燃料生产的双重用途系统的可行性。
{"title":"Zero-waste biotechnological approach: bioremediation of oxytetracycline and congo red using Chlorella vulgaris biomass with subsequent biodiesel recovery.","authors":"Alaa Elmesery, Rehab Mahmoud, Heba A Younes, Amal Zaher, Sarah I Othman, Ahmed A Allam, Liyuan Hou, Mostafa E Elshobary","doi":"10.1007/s13205-025-04601-1","DOIUrl":"https://doi.org/10.1007/s13205-025-04601-1","url":null,"abstract":"<p><p>The release of pharmaceutical and synthetic dye pollutants into aquatic ecosystems presents a significant environmental concern due to their toxicity, persistence, and potential to promote antimicrobial resistance. This study aimed to assess the potential of <i>Chlorella vulgaris</i> for bioremediating Congo Red (CR), a toxic azo dye, and oxytetracycline (OTC), a commonly used antibiotic. <i>Chlorella vulgaris</i> was characterized before and after adsorption using different techniques such as FTIR, SEM and XRD. The optimal removal conditions were determined by using the batch adsorption method to investigate various parameters, including pH, initial contaminant concentration, biomass dosage, and contact time. Adsorption isotherms and kinetics were best fitted using Langmuir and pseudo-second-order models, with maximum adsorption capacities reaching 75.26 mg/g for CR and 69.55 mg/g for OTC. The spent biomass was successfully converted to biodiesel via transesterification, with GC analysis showing a high content of palmitic acid methyl esters. The economic evaluation estimated a biomass production cost of USD 1.16/g, while green chemistry metrics confirmed the environmental sustainability of the process. These findings support the feasibility of using <i>C. vulgaris</i> as a dual-purpose system for phycoremediation and biofuel production.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"16 1","pages":"53"},"PeriodicalIF":2.9,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12770029/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145916245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Therapeutic potential of Eryngium caucasicum extract in type 2 diabetes: insights into Wnt/β-catenin and insulin pathway modulation in Wistar rats. 白饮提取物对2型糖尿病的治疗潜力:Wistar大鼠Wnt/β-catenin和胰岛素通路调节的见解
IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2026-01-05 DOI: 10.1007/s13205-025-04676-w
Mehrnaz Ahmadsharbafi, Hadi Habibollahi, Amir Arasteh

This study evaluated the therapeutic effects of a hydroalcoholic extract of Eryngium caucasicum (ECE) on Wistar rats with streptozotocin-induced type 2 diabetes. Forty male rats were divided into four groups (n = 10): healthy controls, diabetic controls, and diabetic groups treated with either 250 or 500 mg/kg of ECE for 28 days. GC-MS analysis revealed 12 compounds, with beta-D-glucopyranose (11.6%) and lethene (9.37%) being most prevalent. ECE significantly and dose-dependently reduced fasting blood glucose levels (from 583.1 ± 15.2 mg/dL in diabetic controls to 310.5 ± 12.1 mg/dL and 208.6 ± 10.4 mg/dL at 250 and 500 mg/kg, respectively; P < 0.001). In brain tissue, ECE increased glutathione peroxidase (GPx) activity (P < 0.01), decreased malondialdehyde (MDA) levels (P < 0.05), and had minimal effect on total thiols. qRT-PCR analysis of pancreatic tissue showed significant downregulation of Wnt/β-catenin pathway genes (Ctnnb1, Tcf7, Wnt2b; P < 0.05) and upregulation of insulin pathway genes (Ins1 and Glut2; P < 0.01) in ECE-treated diabetic rats. Strong correlations were observed between improved antioxidant levels and glycemic control (e.g., GPx vs. glucose: r = -0.82, P < 0.001), with ROC analysis showing high biomarker potential (AUC > 0.85). These results indicate that ECE reduces hyperglycemia and oxidative stress in type 2 diabetes by boosting antioxidant defenses and modulating Wnt/β-catenin and insulin pathways, highlighting its potential as a phytotherapeutic agent.

本研究评价了白喉水醇提取物(ECE)对Wistar大鼠链脲佐菌素诱导的2型糖尿病的治疗作用。将40只雄性大鼠分为4组(n = 10):健康对照组、糖尿病对照组和糖尿病组,分别给予250或500 mg/kg ECE治疗28 d。GC-MS分析发现了12种化合物,其中β - d -葡萄糖吡喃糖(11.6%)和乙烯(9.37%)最为普遍。ECE显著且剂量依赖性地降低了空腹血糖水平(分别从糖尿病对照组的583.1±15.2 mg/dL降至250和500 mg/kg时的310.5±12.1 mg/dL和208.6±10.4 mg/dL; P P P P r = -0.82, P 0.85)。这些结果表明,ECE通过增强抗氧化防御和调节Wnt/β-catenin和胰岛素通路,降低2型糖尿病患者的高血糖和氧化应激,突出了其作为植物治疗剂的潜力。
{"title":"Therapeutic potential of <i>Eryngium caucasicum</i> extract in type 2 diabetes: insights into Wnt/β-catenin and insulin pathway modulation in Wistar rats.","authors":"Mehrnaz Ahmadsharbafi, Hadi Habibollahi, Amir Arasteh","doi":"10.1007/s13205-025-04676-w","DOIUrl":"https://doi.org/10.1007/s13205-025-04676-w","url":null,"abstract":"<p><p>This study evaluated the therapeutic effects of a hydroalcoholic extract of <i>Eryngium caucasicum</i> (ECE) on Wistar rats with streptozotocin-induced type 2 diabetes. Forty male rats were divided into four groups (<i>n</i> = 10): healthy controls, diabetic controls, and diabetic groups treated with either 250 or 500 mg/kg of ECE for 28 days. GC-MS analysis revealed 12 compounds, with beta-D-glucopyranose (11.6%) and lethene (9.37%) being most prevalent. ECE significantly and dose-dependently reduced fasting blood glucose levels (from 583.1 ± 15.2 mg/dL in diabetic controls to 310.5 ± 12.1 mg/dL and 208.6 ± 10.4 mg/dL at 250 and 500 mg/kg, respectively; <i>P</i> < 0.001). In brain tissue, ECE increased glutathione peroxidase (GPx) activity (<i>P</i> < 0.01), decreased malondialdehyde (MDA) levels (<i>P</i> < 0.05), and had minimal effect on total thiols. qRT-PCR analysis of pancreatic tissue showed significant downregulation of Wnt/β-catenin pathway genes (Ctnnb1, Tcf7, Wnt2b; <i>P</i> < 0.05) and upregulation of insulin pathway genes (Ins1 and Glut2; <i>P</i> < 0.01) in ECE-treated diabetic rats. Strong correlations were observed between improved antioxidant levels and glycemic control (e.g., GPx vs. glucose: <i>r</i> = -0.82, <i>P</i> < 0.001), with ROC analysis showing high biomarker potential (AUC > 0.85). These results indicate that ECE reduces hyperglycemia and oxidative stress in type 2 diabetes by boosting antioxidant defenses and modulating Wnt/β-catenin and insulin pathways, highlighting its potential as a phytotherapeutic agent.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"16 1","pages":"55"},"PeriodicalIF":2.9,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12770012/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145916265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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3 Biotech
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