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Co-infection with Pseudomonas aeruginosa and Leishmania donovani affects the antiparasitic immunity of RAW264.7 macrophages via the NOD-like receptor pathway in vitro 铜绿假单胞菌和多诺瓦利什曼原虫联合感染RAW264.7巨噬细胞通过nod样受体途径体外抗寄生虫免疫。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.actatropica.2025.107964
Zheying Zhu , Dali Chen , Yuying Xiao , Yanqin Zhao , Xing Luo , Xianguang Guo , Shumei Zhen , Jinlei He
Leishmania infections often involve co-infection. Pseudomonas aeruginosa, a common commensal in the sand fly vector of leishmaniasis, can be co-transmitted alongside Leishmania during blood feeding. However, its role in modulating Leishmania infection remains unclear. This study used an in vitro co-infection model and transcriptome sequencing to investigate the interaction between L. donovani and P. aeruginosa co-infection in murine RAW264.7 macrophages. Co-infection enhances L. donovani invasion of macrophage and simultaneously promotes both pro- and anti-inflammatory responses, as evidenced by significant upregulation of cytokines (IL-4, IL-10, IL-1β and TNF-α), macrophage markers (CD80, CD86, Arg1 and CD206) and MHC class I and II molecules (H2-M3, H2-T24, H2-AB1 and H2-EB1). Transcriptome analysis revealed enrichment of differentially expressed genes in immune-related pathways, particularly the NOD-like receptor pathway. To further explore mechanisms by which co-infection affects anti-Leishmania immunity, hub genes and proteins in the NOD-like receptor pathway were validated via qPCR and Western blot. qPCR results indicated significant upregulation of Nod2 and Ccl2 in co-infected versus Leishmania-infection macrophages at 12 h, with c-Jun and JunB showing increasing trends. Western blot confirmed significant upregulation of p-p38, p-ERK, p-JNK, and RIPK2 proteins in the NOD-like receptor signaling pathway at 12 h. However, the co-infection of heat-killed P. aeruginosa or P. aeruginosa culture supernatant with Leishmania parasites did not significantly affect MHC molecules and the NOD-like receptor pathway in macrophages. These findings highlight the complex immunoregulatory mechanisms underlying co-infection and suggest potential therapeutic targets for leishmaniasis treatment.
利什曼原虫感染通常包括合并感染。铜绿假单胞菌是利什曼病沙蝇媒介中的一种常见共生菌,可在吸血过程中与利什曼原虫共同传播。然而,它在调节利什曼原虫感染中的作用仍不清楚。本研究通过体外共感染模型和转录组测序研究了L. donovani和P. aeruginosa在小鼠RAW264.7巨噬细胞中共感染的相互作用。联合感染增强了L. donovani对巨噬细胞的侵袭,同时促进了促炎和抗炎反应,其表现为细胞因子(IL-4、IL-10、IL-1β和TNF-α)、巨噬细胞标志物(CD80、CD86、Arg1和CD206)和MHC I类和II类分子(H2-M3、H2-T24、H2-AB1和H2-EB1)显著上调。转录组分析显示免疫相关通路中差异表达基因的富集,特别是nod样受体通路。为了进一步探索合并感染影响抗利什曼原虫免疫的机制,我们通过qPCR和Western blot验证了nod样受体通路中的枢纽基因和蛋白。qPCR结果显示,共感染与利什曼感染巨噬细胞中Nod2和Ccl2在12h时显著上调,其中c-Jun和JunB呈上升趋势。Western blot证实nod样受体信号通路中p-p38、p-ERK、p-JNK和RIPK2蛋白在12h时显著上调。然而,热灭活铜绿假单胞菌或铜绿假单胞菌培养上清与利什曼原虫共感染对巨噬细胞的MHC分子和nod样受体途径没有显著影响。这些发现强调了合并感染的复杂免疫调节机制,并提出了利什曼病治疗的潜在治疗靶点。
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引用次数: 0
Burden of malaria in young adults in Niger: A prospective study in a military setting 尼日尔青年疟疾负担:一项军事背景下的前瞻性研究。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.actatropica.2025.107958
Yacoudima YM. Aminou , Bello Hamidou , Médard Djedanem , Hamidou Lazoumar Ramatoulaye , Wazodan A. Moustapha , Jean Testa , Ronan Jambou
In Niger, malaria remains a major public health issue and cause of economic loss, but its impact on young adults remains poorly documented. Although this population is central to the country's development, it is rarely studied. Our study aims to fill this gap by assessing the burden of malaria in three cohorts of military recruits monitored in different training centers in Niger, a population representative of urban youth.
A prospective cohort study was conducted from September to December 2023 in three military health centers. Participants (aged 17–55) had free access to care. All consultations were recorded; any episode of fever resulted in a rapid test and a brief interview. Treatments and hospitalizations were also recorded.
A total of 2840 recruits were monitored during two 17-day periods (median age: 27 years; 91.5 % male). The 3193 consultations recorded showed a predominance of respiratory infections in Zinder and digestive disorders in Agadez. Among the 353 confirmed cases of malaria (prevalence 11 %), Niamey had the highest attack rate. Among the patients, 74.5 % were anemic, 44 % were hospitalized, and 55.8 % were temporarily unfit for duty. Grade had a clear influence on preventive knowledge, despite 82 % of respondents reporting that they used mosquito nets.
The study estimates that nearly 2000 workdays are lost annually by these young adults, which could be represents 12 millions of days for the whole country, highlighting the need for an integrated and equitable control strategy.
在尼日尔,疟疾仍然是一个重大的公共卫生问题,也是造成经济损失的原因,但它对年轻人的影响却鲜有记录。尽管这一人口是国家发展的核心,但很少有人对其进行研究。我们的研究旨在通过评估尼日尔不同训练中心监测的三组新兵的疟疾负担来填补这一空白,尼日尔是城市青年的人口代表。一项前瞻性队列研究于2023年9月至12月在三个军事卫生中心进行。参与者(17-55岁)可以免费获得护理。所有的咨询都被记录下来;任何发烧的发作都会导致快速检查和简短的面谈。还记录了治疗和住院情况。共有2840名新兵在两个为期17天的时间段内接受监测(年龄中位数:27岁,91.5%为男性)。记录在案的3 193次问诊显示,津德尔主要是呼吸道感染,阿加德兹主要是消化系统疾病。在353例确诊疟疾病例中(发病率11%),尼亚美的发病率最高。其中,74.5%的患者贫血,44%的患者住院,55.8%的患者暂时不能上班。年级对预防知识有明显的影响,尽管82%的答复者报告说他们使用蚊帐。该研究估计,这些年轻人每年损失近2000个工作日,相当于全国损失1200万个工作日,这凸显了制定综合和公平控制战略的必要性。
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引用次数: 0
Do we have a match? Calculating the potential for integrating neglected tropical disease control programmes for sustainable public health policy 我们有匹配的吗?计算将被忽视的热带病控制规划纳入可持续公共卫生政策的潜力。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2025-12-31 DOI: 10.1016/j.actatropica.2025.107965
Jo Widdicombe , Mahbod Entezami , Victor Del Rio Vilas , Frederick TA. Freeth , Natalia Martinez Muñoz , Daniel Horton , Olaa Mohamed-Ahmed , Katherine Pond , Sean Shadomy , Rachel Tidman , Nisha Tucker , Ryan Wallace , Martha Betson , Joaquín M. Prada

Background

Neglected tropical diseases (NTDs) disproportionately affect the poorest populations. To meet the 2030 World Health Organization (WHO) roadmap targets, integrated and cross-cutting approaches are recommended to streamline programmatic operations across NTDs. Integration is not a new concept. But given recent policy shifts, disruptions to programmes and funding constraints, it is increasingly important. We consider integration as opportunities for coordination or collaboration across NTDs. Research is needed to identify the criteria and requirements necessary for successful programme integration, assess barriers, and determine the relative importance of each criterion to identify potential disease pairings.

Methods

We applied Multi-Criteria Decision Analysis (MCDA) methodologies to gather expert and stakeholder insights on integrated control programmes for NTDs. During a facilitated workshop, participants discussed their interpretations of the terms ‘programmatic integration’ and ‘cross-cutting’ in relation to integrating NTDs programmes. 11 criteria for integration were identified and weighed by participants. Using WHO Roadmap baseline values, pairwise disease combinations were assessed by multiplying criterion weightings with disease scores, generating a priority matrix.

Results

Workshop participants weighted community engagement and common vectors and transmission routes as the most important of the criteria. Three disease combinations with the highest potential for integration were identified, Dengue and Chikungunya, Taeniasis & Cysticercosis and Echinococcosis, and Trachoma and Lymphatic Filariasis.

Conclusions

The workshop outcomes provide valuable insights into key factors for integrating NTD control programmes and highlight potential disease pairings for further exploration. While some disease matches were expected, others were less obvious. The highest-scoring combinations should now be further evaluated for integration potential.
背景:被忽视的热带病(NTDs)对最贫困人口的影响尤为严重。为实现2030年世界卫生组织(世卫组织)路线图目标,建议采取综合和跨领域的办法,以精简各被忽视热带病的规划业务。整合并不是一个新概念。但鉴于最近的政策转变、规划中断和资金限制,它变得越来越重要。我们认为整合是跨被忽视热带病协调或合作的机会。需要进行研究,以确定成功整合规划所需的标准和要求,评估障碍,并确定每项标准对确定潜在疾病配对的相对重要性。方法:我们应用多标准决策分析(MCDA)方法收集专家和利益相关者对被忽视热带病综合控制规划的见解。在一个便利的讲习班上,与会者讨论了他们对与综合被忽视热带病规划有关的“规划综合”和“交叉”术语的解释。参与者确定并权衡了11个整合标准。使用世卫组织路线图基线值,通过将标准权重与疾病评分相乘来评估两两疾病组合,生成优先矩阵。结果:研讨会参与者将社区参与和常见媒介和传播途径视为最重要的标准。确定了三种整合潜力最大的疾病组合,即登革热和基孔肯雅热、带绦虫病、囊虫病和棘球蚴病,以及沙眼和淋巴丝虫病。结论:研讨会成果为整合NTD控制规划的关键因素提供了有价值的见解,并突出了潜在的疾病配对,供进一步探索。虽然有些疾病符合预期,但其他疾病则不那么明显。现在应该进一步评估得分最高的组合的集成潜力。
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引用次数: 0
A decade apart: stability in wing morphology of brazilian mosquitoes 相隔十年:巴西蚊子翅膀形态的稳定性。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2025-12-28 DOI: 10.1016/j.actatropica.2025.107962
Emili Bortolon dos Santos , Mario Arthur Favretto , Mario Antônio Navarro-Silva
Phenotypic variation is a key factor in how organisms adapt to their environments, with important consequences for disease vector dynamics. In mosquitoes (Diptera: Culicidae), such variation can influence vectorial capacity, potentially altering the spread of pathogens. This study investigated whether wing size and shape of two potential vector species, Anopheles cruzii and Psorophora ferox, exhibited temporal variation over a decade in a preserved Atlantic Forest area in southern Brazil. Using geometric morphometrics on 80 female specimens per species (40 from 2005 to 40 from 2014 to 2015), we found no significant differences in wing shape or size between the two sampling periods. However, we did observe high intra-annual variability within each year, suggesting seasonal phenotypic plasticity rather than long-term shifts. These findings highlight the remarkable stability of mosquito populations in conserved environments over long timescales, even while seasonal changes continue to drive short-term phenotypic fluctuations. Understanding these dynamics is essential for refining vector surveillance and control strategies in diverse habitats.
表型变异是生物体如何适应环境的关键因素,对病媒动力学具有重要影响。在蚊子(双翅目:库蚊科)中,这种变异可以影响媒介能力,可能改变病原体的传播。本研究调查了巴西南部大西洋森林保护区克氏按蚊(Anopheles cruzii)和黄颡鱼(Psorophora ferox)两种潜在媒介物种的翅膀大小和形状在10多年间的时间变化。通过对每个物种80个雌性标本(2005年40个,2014-2015年40个)的几何形态测量,我们发现两个采样期间翅膀的形状和大小没有显著差异。然而,我们确实观察到每年都有很高的年内变异性,这表明季节性表型可塑性而不是长期变化。这些发现强调了在长时间尺度上,即使季节变化继续推动短期表型波动,在保守环境中蚊子种群的显着稳定性。了解这些动态对于改进不同栖息地的病媒监测和控制策略至关重要。
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引用次数: 0
Molecular Detection of Plasmodium falciparum Infections Missed by Microscopy and HRP2-Based RDTs in the Dominican Republic 多米尼加共和国恶性疟原虫镜检和hrp2 - rdt漏诊的分子检测
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2025-12-20 DOI: 10.1016/j.actatropica.2025.107956
Claudia Cabrera Federo , Francisco Cuevas , Ana Margarida Gonçalves , Bruno Freitas , Isaac Miguel , Vitoria Baptista , Mariagiulia Conte , Ana Santos-Pereira , Edita Aquino , Mildre Disla , Akemi Tabata , Nuno S. Osório , Modesto Cruz , Maria Isabel Veiga
Malaria elimination in the Dominican Republic is both a public health and economic priority. With low incidence rates and the potential to interrupt transmission in the near future, the country has been included in the WHO E2025 elimination initiative. At this critical stage, highly sensitive diagnostics are essential to detect all infections, particularly in low-transmission settings where undetected cases can sustain transmission and jeopardize elimination efforts.
This study assessed the prevalence of low-density Plasmodium infections that escape detection by both HRP2-based rapid diagnostic tests (RDTs) and microscopy in the Dominican Republic. A total of 1095 suspected malaria cases, initially classified as negative by HRP2-based RDTs and microscopy, were re-examined. Nucleic acids were extracted from used RDT cassettes and screened for Plasmodium spp. using real-time PCR. For samples testing positive for P. falciparum, pfhrp2 gene deletion analysis was subsequently performed.
Results showed that nucleic acid extraction from RDT cassette was successful in 969/1095 (88.5%) samples and P. falciparum DNA was detected in 18/969 (1.9%). Notably, 16.7% (3/18) of these PCR-positive samples carried pfhrp2 deletions, which undermine HRP2-based RDT performance.
These findings underscore the need to strengthen diagnostic strategies to sustain and accelerate malaria elimination efforts in the Dominican Republic.
在多米尼加共和国,消除疟疾既是公共卫生的优先事项,也是经济的优先事项。由于发病率低,且有可能在不久的将来阻断传播,该国已被列入世卫组织E2025消除行动。在这一关键阶段,高度敏感的诊断对于发现所有感染至关重要,特别是在低传播环境中,未被发现的病例可能持续传播并危及消除努力。本研究评估了多米尼加共和国无法通过基于hrp2的快速诊断测试(RDTs)和显微镜检测到的低密度疟原虫感染的流行情况。重新检查了1095例疑似疟疾病例,这些病例最初被基于hrp2的rdt和显微镜诊断为阴性。从使用过的RDT卡带中提取核酸,用实时荧光定量PCR技术筛选疟原虫。对于恶性疟原虫检测呈阳性的样本,随后进行pfhrp2基因缺失分析。结果RDT盒核酸提取成功969/ 1095份(88.5%),检出恶性疟原虫DNA 18/969份(1.9%)。值得注意的是,16.7%(3/18)的pcr阳性样本携带pfhrp2缺失,这破坏了基于hrp2的RDT性能。这些发现强调需要加强诊断战略,以维持和加速多米尼加共和国消除疟疾的努力。
{"title":"Molecular Detection of Plasmodium falciparum Infections Missed by Microscopy and HRP2-Based RDTs in the Dominican Republic","authors":"Claudia Cabrera Federo ,&nbsp;Francisco Cuevas ,&nbsp;Ana Margarida Gonçalves ,&nbsp;Bruno Freitas ,&nbsp;Isaac Miguel ,&nbsp;Vitoria Baptista ,&nbsp;Mariagiulia Conte ,&nbsp;Ana Santos-Pereira ,&nbsp;Edita Aquino ,&nbsp;Mildre Disla ,&nbsp;Akemi Tabata ,&nbsp;Nuno S. Osório ,&nbsp;Modesto Cruz ,&nbsp;Maria Isabel Veiga","doi":"10.1016/j.actatropica.2025.107956","DOIUrl":"10.1016/j.actatropica.2025.107956","url":null,"abstract":"<div><div>Malaria elimination in the Dominican Republic is both a public health and economic priority. With low incidence rates and the potential to interrupt transmission in the near future, the country has been included in the WHO E2025 elimination initiative. At this critical stage, highly sensitive diagnostics are essential to detect all infections, particularly in low-transmission settings where undetected cases can sustain transmission and jeopardize elimination efforts.</div><div>This study assessed the prevalence of low-density <em>Plasmodium</em> infections that escape detection by both HRP2-based rapid diagnostic tests (RDTs) and microscopy in the Dominican Republic. A total of 1095 suspected malaria cases, initially classified as negative by HRP2-based RDTs and microscopy, were re-examined. Nucleic acids were extracted from used RDT cassettes and screened for <em>Plasmodium</em> spp. using real-time PCR. For samples testing positive for <em>P. falciparum, pfhrp2</em> gene deletion analysis was subsequently performed<em>.</em></div><div>Results showed that nucleic acid extraction from RDT cassette was successful in 969/1095 (88.5%) samples and <em>P. falciparum</em> DNA was detected in 18/969 (1.9%). Notably, 16.7% (3/18) of these PCR-positive samples carried <em>pfhrp2</em> deletions, which undermine HRP2-based RDT performance.</div><div>These findings underscore the need to strengthen diagnostic strategies to sustain and accelerate malaria elimination efforts in the Dominican Republic.</div></div>","PeriodicalId":7240,"journal":{"name":"Acta tropica","volume":"273 ","pages":"Article 107956"},"PeriodicalIF":2.5,"publicationDate":"2025-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145809214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
EBV and CMV DNAemia across surgical, nephrological and neurological cohorts EBV和CMV dna血症在外科、肾病和神经学队列中的研究。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2025-12-20 DOI: 10.1016/j.actatropica.2025.107953
Adnan A. Mubaraki , Abdullah S. Alqahtani , Anas A. Alshamrani , Hussain R. Barnawi , Mohammed M. Algethami , Mohammed A Alabdalli , Ahmed N. Alghamdi , Naifa Alenazi , Ahmed S. Abdel-Moneim

Background

Epstein–Barr virus (EBV) and cytomegalovirus (CMV) are common herpesviruses implicated in various diseases. This study aimed to assess the prevalence of EBV and CMV DNAemia across diverse medical conditions, including neurological disorders.

Methods

This study comprised a retrospective cohort including 2463 patients with various medical conditions screened for either CMV (n = 2090) or EBV (n = 373) using quantitative PCR (qPCR) between 2020 and 2024. Additionally, it also included prospective cohort of 119 patients with diverse neurological disorders who were screened for CMV and EBV by qPCR. Data was analyzed to assess EBV and CMV DNAemia and associations with demographic and clinical factors.

Results

EBV DNAemia was detected in 57/373 patients (15.3 %), significantly associated with age (p = 0.032) and clinical category (p < 0.001). Highest positivity was observed in surgical patients (46.9 %) and children <12 years (31.6 %). Viral loads were predominantly low to moderate, with high-level DNAemia in 28.1 % of cases. CMV DNAemia was found in 239/2090 patients (11.4 %), clustered by clinical category (p < 0.001), with highest absolute numbers among “Other” (55.2 %) and nephrology patients (30.5 %). Low-level CMV DNAemia predominated (70 %), high-level replication was rare (4.5 %), and age or sex were not significant predictors. In the neurological cohort, EBV or CMV was detected in 7/119 cases (5.9 %), all low-level, with no significant associations with age, sex, or diagnosis.

Conclusion

EBV and CMV infections were infrequent but showed selective distribution in certain clinical subgroups, particularly paediatric, surgical, and nephrology patients. Limited evidence of EBV/CMV involvement was observed in specific neurological disorders.
背景:eb病毒(EBV)和巨细胞病毒(CMV)是常见的疱疹病毒,与多种疾病有关。本研究旨在评估EBV和CMV dna血症在不同医疗条件下的患病率,包括神经系统疾病。方法:本研究包括一个回顾性队列,包括2,463名患有各种疾病的患者,在2020年至2024年期间使用定量PCR (qPCR)筛查CMV (n=2,090)或EBV (n=373)。此外,该研究还纳入了119例不同神经系统疾病患者的前瞻性队列,这些患者通过qPCR筛查巨细胞病毒和EBV。分析数据以评估EBV和CMV dna血症及其与人口统计学和临床因素的关系。结果:373例患者中有57例(15.3%)检出EBV DNAemia,与年龄(p = 0.032)、临床分型(p < 0.001)相关。结论:EBV和巨细胞病毒感染并不常见,但在某些临床亚组中有选择性分布,特别是儿科、外科和肾脏病患者。在特定的神经系统疾病中观察到EBV/CMV参与的有限证据。
{"title":"EBV and CMV DNAemia across surgical, nephrological and neurological cohorts","authors":"Adnan A. Mubaraki ,&nbsp;Abdullah S. Alqahtani ,&nbsp;Anas A. Alshamrani ,&nbsp;Hussain R. Barnawi ,&nbsp;Mohammed M. Algethami ,&nbsp;Mohammed A Alabdalli ,&nbsp;Ahmed N. Alghamdi ,&nbsp;Naifa Alenazi ,&nbsp;Ahmed S. Abdel-Moneim","doi":"10.1016/j.actatropica.2025.107953","DOIUrl":"10.1016/j.actatropica.2025.107953","url":null,"abstract":"<div><h3>Background</h3><div>Epstein–Barr virus (EBV) and cytomegalovirus (CMV) are common herpesviruses implicated in various diseases. This study aimed to assess the prevalence of EBV and CMV DNAemia across diverse medical conditions, including neurological disorders.</div></div><div><h3>Methods</h3><div>This study comprised a retrospective cohort including 2463 patients with various medical conditions screened for either CMV (<em>n</em> = 2090) or EBV (<em>n</em> = 373) using quantitative PCR (qPCR) between 2020 and 2024. Additionally, it also included prospective cohort of 119 patients with diverse neurological disorders who were screened for CMV and EBV by qPCR. Data was analyzed to assess EBV and CMV DNAemia and associations with demographic and clinical factors.</div></div><div><h3>Results</h3><div>EBV DNAemia was detected in 57/373 patients (15.3 %), significantly associated with age (<em>p</em> = 0.032) and clinical category (<em>p</em> &lt; 0.001). Highest positivity was observed in surgical patients (46.9 %) and children &lt;12 years (31.6 %). Viral loads were predominantly low to moderate, with high-level DNAemia in 28.1 % of cases. CMV DNAemia was found in 239/2090 patients (11.4 %), clustered by clinical category (<em>p</em> &lt; 0.001), with highest absolute numbers among “Other” (55.2 %) and nephrology patients (30.5 %). Low-level CMV DNAemia predominated (70 %), high-level replication was rare (4.5 %), and age or sex were not significant predictors. In the neurological cohort, EBV or CMV was detected in 7/119 cases (5.9 %), all low-level, with no significant associations with age, sex, or diagnosis.</div></div><div><h3>Conclusion</h3><div>EBV and CMV infections were infrequent but showed selective distribution in certain clinical subgroups, particularly paediatric, surgical, and nephrology patients. Limited evidence of EBV/CMV involvement was observed in specific neurological disorders.</div></div>","PeriodicalId":7240,"journal":{"name":"Acta tropica","volume":"273 ","pages":"Article 107953"},"PeriodicalIF":2.5,"publicationDate":"2025-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145809211","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pathogen assessment of Galapagos landbirds reveals novel herpesviruses and adenoviruses 对加拉帕戈斯陆鸟的病原体评估揭示了新型疱疹病毒和腺病毒。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2025-12-20 DOI: 10.1016/j.actatropica.2025.107955
Ainoa Nieto-Claudin , Courtney L. Pike , Gislayne Mendoza-Alcívar , Birgit Fessl , David J. Anchundia , Sharon L. Deem , Paula A. Castaño , Kathleen Apakupakul , Roland Digby , Carlos Sacristán
Galapagos landbirds are currently threatened due to the negative effects of human encroachment. At least one species has become extinct, and several have been extirpated or suffered severe population declines in the past decades. Although some avian pathogens have been described over the years, the presence and prevalence of several infectious agents that may severely impact on the health and conservation of wild and domestic birds in the archipelago remain understudied. To fill this gap, we conducted a comprehensive health assessment of Galapagos landbirds covering five islands (including protected and anthropized areas), testing for three pathogens of avian conservation concern: adenoviruses (AdV), herpesviruses (HV), and Mycoplasma spp. Oral and cloacal swabs of 421 landbirds from 14 species were tested by PCR, and positive samples were subjected to Sanger sequencing. None of the samples were positive for Mycoplasma spp. A total of 35 birds (8.31 %) tested positive for AdV, while 13 (3.09 %) were positive for HV, with higher prevalences found within the inhabited islands of Floreana and Santa Cruz, respectively. Seven main AdV nucleotide sequence types (STs) were obtained, with AdV-1, AdV-3 and AdV-5 clustering within the genus Barthadenovirus, and AdV-2, AdV-4, AdV-6 and AdV-7 grouping within the genus Aviadenovirus. Three HV STs were obtained, with HV-1 and HV-3 clustering within the genus Mardivirus, and HV-2 grouping within the genus Iltovirus. To our knowledge, this is the first molecular description of novel adenoviruses and herpesviruses in Galapagos landbirds, which will inform current and future conservation efforts in the archipelago.
由于人类入侵的负面影响,加拉帕戈斯群岛的陆鸟目前受到威胁。在过去的几十年里,至少有一个物种已经灭绝,有几个物种已经灭绝或遭受了严重的数量下降。尽管多年来已经描述了一些禽类病原体,但对可能严重影响该群岛野生鸟类和家禽健康和保护的几种传染性病原体的存在和流行情况仍未进行充分研究。为了填补这一空白,我们对加拉帕戈斯群岛5个岛屿(包括保护区和人类活动区域)的陆鸟进行了全面的健康评估,检测了鸟类保护关注的3种病原体:腺病毒(AdV)、疱疹病毒(HV)和支原体,并对14种421只陆鸟的口腔和直肠拭子进行了PCR检测,阳性样本进行了Sanger测序。共有35只(8.31%)鸡AdV检测呈阳性,13只(3.09%)HV检测呈阳性,其中在圣克鲁斯岛和弗洛里安那岛的流行率较高。获得了7种主要的AdV核苷酸序列类型(STs),其中AdV-1、AdV-3和AdV-5属于巴塞腺病毒属,AdV-2、AdV-4、AdV-6和AdV-7属于鸟腺病毒属。获得3个HV STs, HV-1和HV-3聚集在Mardivirus属中,HV-2聚集在Iltovirus属中。据我们所知,这是加拉帕戈斯群岛陆鸟中新型腺病毒和疱疹病毒的首次分子描述,将为该群岛当前和未来的保护工作提供信息。
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引用次数: 0
“Proteome-wide immunoinformatics analysis of Leishmania major: discovery of eight novel vaccine candidates and systematic evaluation of historical targets” 利什曼原虫主要的蛋白质组免疫信息学分析:发现八种新的候选疫苗和对历史靶点的系统评估。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2025-12-18 DOI: 10.1016/j.actatropica.2025.107949
Ali Abdulqader, Farah M. Abdulsada, Mariam Qassim Al-Dulemey, Mohd Shahir Shamsir
Leishmania major remains a significant public health threat, yet vaccine development has been hampered by fragmented antigen selection approaches and limited systematic proteome-wide analysis. In this study, we developed a comprehensive immunoinformatics pipeline to systematically evaluate the entire L. major proteome (8038 proteins) using standardized selection criteria: subcellular localization (extracellular/membrane), antigenicity (VaxiJen ≥ 0.5), allergenicity assessment (AllerTOP/AlgPred consensus), signal peptide presence (SignalP ≥ 0.7), transmembrane topology (TMHs < 2), optimal sequence length (100–500 aa), host homology exclusion (≤ 30% identity), and cross-species conservation analysis. This rigorous screening identified nine potential vaccine targets, including eight novel candidates and the well-known established antigen GP46 (Q4Q6B6) that passed all filtering criteria. Remarkably, four candidates (E9AFZ7, Q4Q0L6, Q4Q0X3, Q4QC59) remain annotated as "uncharacterized proteins" in UniProt, representing completely unexplored therapeutic targets. All nine candidates exhibited optimal vaccine properties: membrane/extracellular localization, high antigenicity (VaxiJen 0.52–0.89), non-allergenicity, signal peptide presence, and absence of human homologs. To validate our pipeline's stringency, we retrospectively analyzed twelve historically proposed L. major vaccine candidates using identical criteria. Strikingly, 67% (8/12) failed our selection standards: eight due to concerning host homology (> 30% human identity) and four due to predicted allergenicity, with only GP46 meeting all requirements. Cross-species conservation analysis demonstrated broad Leishmania species coverage for our novel candidates, supporting their potential as universal vaccine targets. This study represents a paradigm shift from focusing on individual known antigens to employing systematic proteome-wide discovery, delivering a standardized framework for Leishmania vaccine candidate selection. The identification of nine candidates including GP46 antigen, including four uncharacterized proteins, significantly expands the therapeutic pipeline while our validation approach establishes quality-control standards essential for advancing neglected tropical disease vaccine development.
大利什曼原虫仍然是一个重大的公共卫生威胁,但疫苗的开发受到碎片化抗原选择方法和有限的系统全蛋白质组分析的阻碍。在这项研究中,我们开发了一个全面的免疫信息学管道,使用标准化的选择标准系统地评估整个L. major蛋白质组(8,038个蛋白质):亚细胞定位(细胞外/膜)、抗原性(VaxiJen≥0.5)、致敏性评估(AllerTOP/AlgPred共识)、信号肽存在(SignalP≥0.7)、跨膜拓扑(TMHs < 2)、最佳序列长度(100-500 aa)、宿主同源性排除(≤30%同一性)和跨物种保守性分析。这项严格的筛选确定了9个潜在的疫苗靶点,包括8个新的候选靶点和通过所有过滤标准的已知抗原GP46 (Q4Q6B6)。值得注意的是,四个候选蛋白(E9AFZ7, Q4Q0L6, Q4Q0 × 3,Q4QC59)在UniProt中仍然被标注为“未表征蛋白”,代表了完全未探索的治疗靶点。所有9种候选疫苗均表现出最佳的疫苗特性:膜/细胞外定位、高抗原性(VaxiJen 0.52-0.89)、非致敏性、存在信号肽和不存在人类同源物。为了验证我们的管道的严密性,我们使用相同的标准回顾性分析了12种历史上提出的主要乳杆菌候选疫苗。引人注目的是,67%(8/12)不符合我们的选择标准:8个是因为担心宿主同源性(> 30%的人类同源性),4个是因为预测的过敏原性,只有GP46符合所有要求。跨物种保护分析表明,我们的新候选利什曼原虫物种覆盖范围广泛,支持它们作为通用疫苗靶点的潜力。这项研究代表了从关注单个已知抗原到采用系统的蛋白质组发现的范式转变,为利什曼原虫候选疫苗的选择提供了一个标准化的框架。包括GP46抗原在内的9个候选抗原的鉴定,包括4个未鉴定的蛋白,大大扩展了治疗管道,而我们的验证方法为推进被忽视的热带病疫苗开发建立了必不可少的质量控制标准。
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引用次数: 0
Evidence of eurythermal behavior and microbiota differentiation in Aedes aegypti and Aedes albopictus from the Colombian Amazon biome 哥伦比亚亚马逊地区埃及伊蚊和白纹伊蚊的低温行为和微生物群分化证据。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2025-12-18 DOI: 10.1016/j.actatropica.2025.107951
Alejandro Castañeda Espinosa, Rafael J. Vivero Gómez, Daniela Duque-Granda, Gloria E. Cadavid-Restrepo, Howard Junca, Claudia Ximena Moreno-Herrera
Temperature is one of the most important factors influencing mosquito development, vector competence, and microbiome composition, affecting the disease transmission cycle by either facilitating or inhibiting pathogen establishment. This study aimed to estimate temperature preference and its correlation with bacterial communities in populations of Ae. aegypti and Ae. albopictus from the urban area of Leticia, Amazonas. Temperature preference profiles were obtained by introducing 50 individuals of each species and sex in six replicates for one hour into a device with a temperature gradient of 19–36 °C. Subsequently, a metataxonomic analysis of bacterial communities was performed using DNA extracted from whole mosquito body groups associated with temperature ranges defined by their statistical significance. First, it was determined that females of both species preferred temperatures between 23 and 28 °C. Meanwhile, Ae. aegypti males showed a larger temperature preference range (21–28 °C) than Ae. albopictus males (25–28 °C). Regarding bacterial communities, an increase in diversity was observed in males of both species with rising temperatures, whereas the opposite occurred in females. The Amplicon Sequence Variants (ASVs) associated with Asaia (2.88%), Cedecea (45.80%), Elizabethkingia (77.78%), and Klebsiella (8.90%) were the most abundant genera in Ae. aegypti. In comparison, Ae. albopictus exhibited a high abundance of Elizabethkingia (36.34%), Pseudomonas (95.08%), and Wolbachia (12.73%). Interestingly, Elizabethkingia varied in abundance according to sex and temperature in both species. It was determined that the structure of Aedes bacterial communities in the Amazon was influenced by sex, species, and temperature, indicating high plasticity and ubiquity according to temperature profiles.
温度是影响蚊虫发育、媒介能力和微生物组成的重要因素之一,通过促进或抑制病原体的建立来影响疾病的传播周期。本研究旨在估计伊蚊种群的温度偏好及其与细菌群落的关系。埃及伊蚊和伊蚊。来自亚马逊州莱蒂西亚市区的白纹伊蚊。在温度梯度为19-36°C的装置中,将每个物种和性别各50个个体分为6个重复,放置1小时,获得温度偏好谱。随后,利用从整个蚊子体群中提取的DNA对细菌群落进行元分类学分析,这些DNA与温度范围的统计显著性相关。首先,确定了这两个物种的雌性偏好23-28°C之间的温度。与此同时,Ae。埃及伊蚊雄蚊对温度的偏好范围大于伊蚊(21 ~ 28℃)。雄性白纹伊蚊(25-28°C)。在细菌群落方面,随着温度的升高,两种雄鱼的多样性都有所增加,而雌鱼的多样性则相反。与Asaia(2.88%)、Cedecea(45.80%)、Elizabethkingia(77.78%)和Klebsiella(8.90%)相关的扩增子序列变异(Amplicon Sequence Variants, asv)是伊蚊中数量最多的属。蚊。相比之下,Ae。白纹伊蚊中伊丽莎白氏菌(36.34%)、假单胞菌(95.08%)和沃尔巴克氏菌(12.73%)丰度较高。有趣的是,在这两个物种中,elizabeth ethkingia的丰度根据性别和温度的不同而变化。结果表明,亚马逊地区伊蚊细菌群落结构受性别、物种和温度的影响,具有高度的可塑性和普遍性。
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引用次数: 0
Finding the hidden genes in Leishmania guyanensis genome: Application of proteogenomics approach to improve the genome annotation in the kinetoplastid parasite 寻找古颜利什曼原虫基因组中的隐藏基因:应用蛋白质基因组学方法改进着丝体寄生虫基因组注释。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2025-12-18 DOI: 10.1016/j.actatropica.2025.107952
Shubhankar A Pawar , Aditi Shenoy , Karthick Vasudevan , Nalini Mishra , Mahendra Jamdhade , Harsh Pawar
The kinetoplastid protozoan parasite Leishmania guyanensis a member of the Leishmania (Viannia) species complex is the causative agent of American tegumentary leishmaniasis (ATL). L. guyanensis infections typically result in cutaneous lesions, but in some cases can progress to mucocutaneous leishmaniasis, particularly when co-infected with Leishmania RNA virus 1 (LRV1), thus leading to exacerbated inflammation, treatment failure, and relapse. Despite the availability of its reference genome, limitations in gene annotation persist due to the presence of hypothetical proteins, pseudogenes, and unrecognised coding regions. In this study, we employed a proteogenomic approach integrating publicly available high-resolution mass spectrometry data with a custom six-frame translated genome database to refine the genome annotation of L. guyanensis strain MHOM/BR/75/M4147. Utilising stringent database-dependent searches with a 1% false discovery rate, we identified numerous unique peptides, of which 653 were genome search-specific peptides (GSSPs) mapping exclusively to unannotated genomic regions. These GSSPs facilitated the discovery of 65 novel protein-coding genes and the correction of 62 existing gene models, including N- and C-terminal extensions. Our findings demonstrate the power of proteogenomics to uncover cryptic protein-coding regions and improve genome annotations beyond conventional predictions. This refined annotation enhances our understanding of L. guyanensis biology, providing a more accurate proteomic landscape that can inform studies on parasite virulence, host interaction, and potential therapeutic targets. The study underscores the importance of integrating proteomic evidence with genomic data to capture the full coding potential of kinetoplastid parasites, paving the way for improved diagnostics and interventions against leishmaniasis.
古延利什曼原虫(Leishmania guyanensis)是利什曼原虫(Leishmania Viannia)种复合体的一种动质体原生动物寄生虫,是美洲发育性利什曼病(ATL)的病原体。古yanl .感染通常导致皮肤病变,但在某些情况下可发展为皮肤粘膜利什曼病,特别是当利什曼RNA病毒1 (LRV1)合并感染时,从而导致炎症加重、治疗失败和复发。尽管有参考基因组的可用性,但由于存在假设的蛋白质、假基因和未识别的编码区,基因注释的局限性仍然存在。在这项研究中,我们采用蛋白质基因组学方法,将公开的高分辨率质谱数据与定制的六帧翻译基因组数据库相结合,完善了古yanensis菌株MHOM/BR/75/M4147的基因组注释。利用严格的数据库依赖搜索和1%的错误发现率,我们确定了许多独特的肽,其中653是基因组搜索特异性肽(gssp),专门映射到未注释的基因组区域。这些gssp促进了65个新的蛋白质编码基因的发现,并纠正了62个现有的基因模型,包括N端和c端延伸。我们的研究结果证明了蛋白质基因组学在揭示隐蛋白编码区和改进基因组注释方面的能力,超出了传统的预测。这一精细化的注释增强了我们对古yanensis生物学的理解,提供了更准确的蛋白质组学景观,可以为寄生虫毒力、宿主相互作用和潜在治疗靶点的研究提供信息。这项研究强调了将蛋白质组学证据与基因组数据结合起来的重要性,以捕获着丝质体寄生虫的全部编码潜力,为改进利什曼病的诊断和干预措施铺平道路。
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Acta tropica
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