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Machine Learning forecasting of dengue in São Paulo using virtual data augmentation and urban incident predictors: Addressing the exceptional surge of cases in 2024 使用虚拟数据增强和城市事件预测器对<s:1>圣保罗登革热进行机器学习预测:应对2024年异常激增的病例
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-26 DOI: 10.1016/j.actatropica.2026.107992
Mohamad Al Bannoud , Jorge Luiz Mendes , Rodrigo Seiti Sacay , Tiago Dias Martins , Iara Rocha Antunes Pereira Bresolin , Joana Bratz Lourenço
Dengue remains one of the most critical vector-borne diseases globally, with Brazil consistently reporting the highest incidence in the Americas. The 2024 epidemic was the largest in the country’s history, with São Paulo as its epicenter. This study developed and evaluated a machine learning (ML) framework to forecast dengue under extreme epidemic conditions, focusing on enhancing model robustness when testing data exceed the range of historical observations. A novel virtual data augmentation strategy was introduced to expose models to synthetic large-scale outbreaks and to assess the predictive value of urban incident variables such as flooding and flooded streets. Epidemiological, climatic, and urban incident data from 2014 to 2022 were used for model training, and 2023–mid-2025 for testing. Fourteen ML algorithms were systematically evaluated under multiple preprocessing configurations, including feature scaling, lagged predictors, feature combinations, data augmentation, and feature reduction. Forecasts targeted probable, confirmed, severe, and fatal dengue cases at a one-week horizon. The algorithms AdaBoost and CatBoost achieved the highest predictive accuracy. Virtual data augmentation substantially improved robustness when test values exceeded training maxima, reducing RMSE by up to 80% for probable and confirmed cases, 42% for severe cases, and 53% for deaths compared with models trained on unaugmented data. Flooding-related indicators, especially flooded-street case counts, were among the most influential predictors. The proposed ML framework accurately forecasted dengue incidence and severity during the unprecedented 2024 outbreak. The virtual augmentation method effectively managed distributional shifts and extreme epidemic magnitudes, providing a transferable foundation for early-warning systems and public-health preparedness in urban settings.
登革热仍然是全球最严重的病媒传播疾病之一,巴西一直是美洲发病率最高的国家。2024年的疫情是该国历史上规模最大的一次,以圣保罗为震中。本研究开发并评估了一个机器学习(ML)框架,用于在极端流行条件下预测登革热,重点是在测试数据超出历史观测范围时增强模型的鲁棒性。引入了一种新的虚拟数据增强策略,使模型暴露于综合大规模疫情,并评估城市事件变量(如洪水和被淹街道)的预测价值。2014年至2022年的流行病学、气候和城市事件数据用于模型训练,2023年至2025年中期用于测试。在多种预处理配置下,系统评估了14种ML算法,包括特征缩放、滞后预测器、特征组合、数据增强和特征约简。预报针对一周内的可能、确诊、严重和致命登革热病例。AdaBoost和CatBoost算法达到了最高的预测精度。当测试值超过训练最大值时,虚拟数据增强大大提高了鲁棒性,与未增强数据训练的模型相比,可能病例和确诊病例的RMSE降低了80%,严重病例降低了42%,死亡病例降低了53%。与洪水有关的指标,特别是被洪水淹没的街道病例数,是最具影响力的预测指标之一。提出的ML框架准确预测了2024年前所未有的疫情期间登革热的发病率和严重程度。虚拟增强方法有效地管理了分布变化和极端流行病规模,为城市环境中的预警系统和公共卫生准备提供了可转移的基础。
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引用次数: 0
Thermal stress responses on developmental time, survival, and wing morphometrics in desert and coastal strains of Aedes aegypti (Diptera: Culicidae) from India 热胁迫对印度沙漠和沿海埃及伊蚊发育时间、存活和翅膀形态的影响。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-26 DOI: 10.1016/j.actatropica.2026.107994
Sushmita Swain , Gaurav Sharma , Rakesh Kumar Samantaray , Devi Shankar Suman

Background

Aedes aegypti is a primary vector of dengue, chikungunya, Zika, and yellow fever diseases. Despite its global invasion, little is known about how populations from climatically contrasting regions adapt to varied thermal environments. Understanding survival strategies is critical for predicting population dynamics and disease transmission under climate change. To address this gap, we assessed ecological adaptations in terms of development, survival, and wing length, along with molecular variations, in the Thar Desert (Jodhpur) and the east coastal (Kolkata) strains of Ae. aegypti.

Methods

Mosquito eggs (3rd generation) of the coastal and desert Ae. aegypti strains were subjected to 20, 26, 30, and 35 °C to assess the impact on developmental time, survival rate, and wing length. The mitochondrial COI gene was analysed to examine nucleotide sequence variation and protein physicochemical properties.

Results

The desert strain developed faster, but showed inferior survival compared to the coastal strain at all temperatures tested. Temperature also affected wing length in both strains, showing significant differences between strains at 35 °C for males and at 30 °C for females. Wing length of the desert strain was less impacted by temperature increase (30 to 35 °C) compared to the coastal strain for both males and females. The COI gene formed two distinct clades. Three transition nucleotide mutations (Adenosine with Guanosine) altered physicochemical and structural properties of the COI protein (i.e., molecular weight, theoretical isoelectric point, total number of positively charged residues, and the number of atoms). Additionally, the bad angles, instability index, and GRAVY affected the protein.

Conclusion

This study provides a comparative analysis linking life-history traits with genetic variation in Aedes aegypti mosquitoes from climatically distinct regions of India. Temperature affects the survival, developmental rates, and wing length of genetically varied Ae. aegypti from different ecological areas. This may refine the understanding of population dynamics and management.
背景:埃及伊蚊是登革热、基孔肯雅热、寨卡和黄热病疾病的主要媒介。尽管它在全球范围内入侵,但人们对来自气候差异较大地区的种群如何适应不同的热环境知之甚少。了解生存策略对于预测气候变化下的种群动态和疾病传播至关重要。为了解决这一差距,我们评估了在塔尔沙漠(焦特布尔)和东部沿海(加尔各答)的伊蚊菌株的发育、生存和翅膀长度方面的生态适应性以及分子变异。蚊。方法:采集沿海和沙漠伊蚊第3代卵;分别在20、26、30和35°C温度下观察埃及伊蚊菌株的发育时间、存活率和翅长。分析线粒体COI基因的核苷酸序列变异和蛋白质理化性质。结果:在所有温度下,沙漠菌株的生长速度更快,但存活率低于沿海菌株。温度对两种菌株的翅长也有影响,在35°C的雄株和30°C的雌株之间存在显著差异。与沿海品系相比,沙漠品系翅长受温度升高(30 ~ 35℃)的影响较小。COI基因形成了两个不同的分支。三个过渡核苷酸突变(腺苷和鸟苷)改变了COI蛋白的物理化学和结构特性(即分子量、理论等电点、带正电残基总数和原子数)。此外,不良角度、不稳定性指数和肉汁对蛋白质也有影响。结论:本研究提供了一种将印度不同气候地区的埃及伊蚊生活史特征与遗传变异联系起来的比较分析。温度影响着不同基因的伊蚊的存活率、发育速率和翅长。埃及伊蚊来自不同的生态区域。这可能会完善对种群动态和管理的理解。
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引用次数: 0
Development of an RT-PCR assay for American Phlebotomine-transmitted Bunyaviricetes and isolation of Pacuvirus (Peribunyaviridae) in dogs with canine visceral Leishmaniasis in Rio de Janeiro, Brazil 建立美洲白蛉传播的布尼亚病毒RT-PCR检测方法,并从巴西里约热内卢犬内脏利什曼病犬中分离出帕库病毒(环布尼亚病毒科)。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-26 DOI: 10.1016/j.actatropica.2026.107995
Daniel Marcos J. Agostinho , José Vitorino dos Santos , Mariana Boité , Elisa Cupolillo , Matheus Nobrega Luques , Clarissa R. Damaso , Ulisses Gazos Lopes
Sand fly vectors harbor and transmit Leishmania parasites and other pathogens, including arboviruses, to vertebrate hosts. The geographical distribution of phleboviruses transmitted by sand flies in areas affected by leishmaniasis has prompted research into coinfection in vectors and in Leishmania reservoirs in Europe and Africa. Despite the widespread occurrence of canine visceral Leishmaniasis in Brazil and the identification of several viruses carried by sand flies, the issue of coinfection remains unclear. We developed an RT-PCR-based assay to detect segmented (−) RNA arboviruses from the families Phenuiviridae and Peribunyaviridae in the Americas. This assay was based on a phylogenetic analysis of the genomes of 29 American species within these families. We processed serum and bone marrow samples from 25 dogs with confirmed cases of visceral leishmaniasis in Rio de Janeiro City, Brazil. Samples from two of the dogs were amplified using a set of primers tailored to the predicted amplicon size. DNA sequencing analysis revealed a high identity to members of the Peribunyaviridae family, specifically within the genus Pacuvirus. We successfully cultivated the virus from one of the samples and sequenced its genome, confirming the identification of a virus belonging to the species Pacuvirus pacuiense or a closely related variant. The implications of our results are discussed.
沙蝇媒介携带利什曼原虫寄生虫和其他病原体,包括虫媒病毒,并将其传播给脊椎动物宿主。在受利什曼病影响的地区,沙蝇传播的白蛉病毒的地理分布促使人们对欧洲和非洲的媒介和利什曼病库的共同感染进行研究。尽管犬内脏利什曼病在巴西广泛发生,并且发现了几种由沙蝇携带的病毒,但合并感染的问题仍不清楚。我们开发了一种基于rt - pcr的检测方法,用于检测美洲Phenuiviridae和peribunyavirridae的节段(-)RNA虫媒病毒。该分析是基于对这些科内29个美洲物种基因组的系统发育分析。我们处理了巴西里约热内卢市25只内脏利什曼病确诊犬的血清和骨髓样本。其中两只狗的样本使用一组根据预测扩增子大小定制的引物进行扩增。DNA测序分析显示,该病毒与环布尼亚病毒科成员具有高度的同一性,特别是在帕库病毒属中。我们成功地从其中一个样本中培养了该病毒,并对其基因组进行了测序,确认了该病毒属于帕库病毒或其密切相关的变体。讨论了我们的研究结果的含义。
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引用次数: 0
Molecular evidence of Mycobacterium avium subspecies paratuberculosis (MAP) shedding in the invasive American mink (Neogale vison) in southern Chile 智利南部入侵美洲水貂(Neogale vison)中鸟分枝杆菌亚种副结核(MAP)脱落的分子证据。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-24 DOI: 10.1016/j.actatropica.2026.107991
Carlos Tejeda , Natalia Pérez , Francisca Escobar , Daniel Iturra , Brandon Aristizábal , Eduardo Raffo , Manuel Moroni , Miguel Salgado , Felipe A. Hernández
Mycobacterium avium subsp. paratuberculosis (MAP) is the causative agent of Johne’s disease (paratuberculosis), a chronic enteritis affecting domestic and wild ruminants worldwide. While MAP transmission primarily occurs among livestock, increasing attention has been given to the role of wildlife in the maintenance and spread of this pathogen. Invasive species, such as the American mink (Neogale vison), may serve as unexpected source of infection or mechanical vectors for MAP, especially in regions where wildlife and domestic animals share habitats. In this study, we performed a specific MAP-IS900 real-time PCR assay to detect bacterial DNA in mesenteric lymph nodes (MesLN) (n = 401) and colonic/rectal fecal swabs (n = 346) from minks in Los Ríos region, Chile. We detected MAP DNA in 16 % and 10 % of minks in MesLN and fecal swabs, respectively, while 4 % of minks were MAP qPCR-positive in both MesLN and fecal swab samples. Considering specimens with known sex and age, we detected MAP DNA in 22 % of minks in either MesLN or fecal swabs, where 21 % of males and 22 % of females were MAP qPCR-positives, and 15 % of juveniles, 25 % of subadults, and 21 % of adults were MAP DNA-positive in at least one sample type. Our study is the first report on MAP detection in this non-ruminant carnivore in Chile, raising further questions about interspecies transmission dynamics and the potential environmental dissemination of this bacterial agent. These findings highlight the need for broader surveillance strategies that incorporate wildlife, particularly invasive species, into MAP control programs.
鸟分枝杆菌亚种副结核(MAP)是约翰氏病(副结核)的病原体,约翰氏病是一种影响全世界家养和野生反刍动物的慢性肠炎。虽然MAP传播主要发生在牲畜中,但野生动物在维持和传播该病原体方面的作用已得到越来越多的关注。入侵物种,如美洲水貂(Neogale vision),可能成为意想不到的感染源或MAP的机械媒介,特别是在野生动物和家畜共享栖息地的地区。在这项研究中,我们对智利Los Ríos地区水貂肠系膜淋巴结(MesLN) (n=401)和结肠/直肠粪便拭子(n=346)中的细菌DNA进行了特异性MAP-IS900实时PCR检测。我们分别在16%和10%的水貂中检测到MAP DNA,而4%的水貂在MesLN和粪便拭子样本中都检测到MAP qpcr阳性。在已知性别和年龄的样本中,我们在22%的水貂或粪便拭子中检测到MAP DNA,其中21%的雄性和22%的雌性为MAP qpcr阳性,15%的少年、25%的亚成虫和21%的成虫在至少一种样本类型中呈MAP DNA阳性。我们的研究是智利首次在这种非反刍食肉动物中检测到MAP,进一步提出了该细菌病原体的种间传播动力学和潜在环境传播的问题。这些发现强调需要更广泛的监测战略,将野生动物,特别是入侵物种纳入MAP控制计划。
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引用次数: 0
The association of Blastocystis sp. ST3 with gram negative bacteria is altered by short-term purification strategies Blastocystis sp. ST3与革兰氏阴性菌的关联被短期纯化策略所改变。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-23 DOI: 10.1016/j.actatropica.2026.107990
Sheivanya Gayatrri Kuppusamy , Suresh Kumar Govind , Chandramathi Samudi Raju , Freddy Franklin , Christina Parvinder Kaur , Arutchelvan Rajamanikam
Blastocystis sp. is a gut protozoan parasite that is associated with gastrointestinal symptoms. Over time, it has garnered controversial findings on having a beneficial or harmful role in the gut microbiota. To date, studies on the interaction between Blastocystis sp. and bacteria remain limited due to challenges in establishing axenic Blastocystis sp. cultures. Although axenization is imperative for Blastocystis sp.-bacteria interaction, the process is time-consuming. This study evaluates alternative approaches to study Blastocystis sp.-bacteria associations when axenization is unfeasible in a limited timeframe. Blastocystis sp. cells were purified using mechanical (Lymphopure-density gradient centrifugation) and chemical (antibiotic cocktail treatment) purification methods and subsequently assessed by establishing a growth profile of purified Blastocystis sp. cells co-cultured with Escherichia coli, Klebsiella pneumoniae and Pseudomonas aeruginosa at varying concentrations. Our results demonstrated that both purification methods successfully reduced bacterial load. However, mechanical purification was able to reduce the bacterial load to a greater extent across both isolates compared to chemical purification. Growth of Blastocystis sp. in co-cultures varied according to the bacterial species and their respective concentrations. The symptomatic Blastocystis sp. isolate generally peaked at lower bacterial concentrations compared to the asymptomatic Blastocystis sp. isolate, implicating an isolate-specific association with bacteria. This observation is more apparent in mechanically purified co-cultures. Our findings suggest that mechanical purification can be a feasible time-saving alternative to axenization. Our preliminary data hypothesizes that Blastocystis sp.-bacteria association is influenced by the status of the protozoan isolate, bacterial concentration, and purification methods.
囊虫是一种与胃肠道症状相关的肠道原生动物寄生虫。随着时间的推移,它已经获得了有争议的发现,对肠道微生物群有有益或有害的作用。迄今为止,由于建立无菌囊虫培养物的挑战,囊虫与细菌之间相互作用的研究仍然有限。尽管无菌化是囊胚与细菌相互作用的必要条件,但这一过程非常耗时。本研究评估了在有限时间内不可行的情况下研究囊胚孢子虫与细菌关联的替代方法。采用机械(淋巴-密度梯度离心)和化学(抗生素鸡尾酒处理)纯化囊虫sp.细胞,随后通过建立纯化囊虫sp.细胞与大肠杆菌、肺炎克雷伯菌和铜绿假单胞菌在不同浓度下共培养的生长谱来评估。我们的结果表明,两种纯化方法都成功地减少了细菌负荷。然而,与化学净化相比,机械净化能够在更大程度上减少两种分离株的细菌负荷。囊虫在共培养中的生长情况根据细菌种类及其各自的浓度而变化。与无症状囊胚分离菌相比,有症状囊胚分离菌通常在较低的细菌浓度下达到峰值,这意味着与细菌的分离特异性相关。这种观察在机械纯化的共培养物中更为明显。我们的研究结果表明,机械净化是一种可行的节省时间的替代方法。我们的初步数据假设囊虫sp.与细菌的关联受原生动物分离状态、细菌浓度和纯化方法的影响。
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引用次数: 0
Repurposing of FDA-approved drugs to identify potential ns2b/ns3 protease inhibitors against dengue virus: In silico and in vitro evaluation 重新利用fda批准的药物来鉴定潜在的抗登革热病毒ns2b/ns3蛋白酶抑制剂:计算机和体外评估
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-20 DOI: 10.1016/j.actatropica.2026.107987
Adiba, Alia Uzma, Mustafeez Mujtaba Babar, Muhammad Armaghan Khalid, Muhammad Tariq Navid, Liaqat Ali, Deeba Amraiz
Dengue virus (DENV) poses a significant global health burden, affecting many countries and regions worldwide, with no specific antiviral therapy currently available. The NS2B/NS3 protease is a crucial enzyme in viral replication, making it a promising target for the development of antiviral drugs. Drug repurposing offers a rapid and cost-efficient strategy by evaluating FDA-approved compounds for new antiviral indications. The present study aimed to identify potent inhibitors of DENV-2 NS2B/NS3 protease with an integrated in silico and in vitro analysis. Molecular docking was used to screen a library of 3109 FDA-approved drugs in the ZINC database with PyRx software. The three hits, Simeprevir, Saquinavir, and Dolutegravir were subsequently evaluated for their cytotoxicity and antiviral activity in Vero cells, using MTT and infectivity-based assays, respectively. MD simulations confirmed stable binding of Dolutegravir, Saquinavir, and Simeprevir with DENV NS2B/NS3 protease. Although dolutegravir displayed a slightly lower docking affinity, the compound demonstrated the lowest cytotoxicity with CC₅₀ 133.7 µg/mL (318.8 µM), and slightly enhanced antiviral activity with IC₅₀ 22.5 µg/mL (53.7 µM) among the tested compounds. Saquinavir showed CC₅₀ of 118.6 µg/mL (176.8 µM)) and an IC₅₀ 25.0 µg/mL (37.3 µM) and Simeprevir exhibited CC₅₀ 80.9 µg/mL (107.9 µM) with an IC₅₀ 20.0 µg/mL (26.7 µM). This study reflects on the potential of Dolutegravir as a dengue protease inhibitor and also indicates the efficacy of drug repurposing as a drug discovery strategy in the paradigm of antiviral discovery. Dolutegravir was identified as a potential candidate against DENV-2, and additional research is needed with molecular dynamics, mechanistic inquiry, and in vivo support investigation.
登革热病毒(DENV)造成了重大的全球卫生负担,影响到世界上许多国家和地区,目前尚无专门的抗病毒治疗方法。NS2B/NS3蛋白酶是病毒复制的关键酶,是开发抗病毒药物的一个有希望的靶点。通过评估fda批准的用于新的抗病毒适应症的化合物,药物再利用提供了一种快速且具有成本效益的策略。本研究旨在通过集成的计算机和体外分析鉴定DENV-2 NS2B/NS3蛋白酶的有效抑制剂。利用PyRx软件对ZINC数据库中3109种fda批准的药物进行分子对接筛选。随后,分别使用MTT和基于感染的检测方法评估了三种药物Simeprevir、Saquinavir和Dolutegravir在Vero细胞中的细胞毒性和抗病毒活性。MD模拟证实Dolutegravir、Saquinavir和Simeprevir与DENV NS2B/NS3蛋白酶稳定结合。虽然dolutegravir显示出稍低的对接亲和力,但该化合物在CC₅₀133.7µg/mL(318.8µM)表现出最低的细胞毒性,并且在测试化合物中与IC₅₀22.5µg/mL(53.7µM)略有增强的抗病毒活性。Saquinavir显示CC₅0为118.6µg/mL(176.8µM))和IC₅0为25.0µg/mL(37.3µM), Simeprevir显示CC₅0为80.9µg/mL(107.9µM), IC₅0为20.0µg/mL(26.7µM)。这项研究反映了Dolutegravir作为登革热蛋白酶抑制剂的潜力,也表明了药物再利用作为一种药物发现策略在抗病毒发现范式中的有效性。Dolutegravir被确定为DENV-2的潜在候选药物,需要进一步的分子动力学、机制探究和体内支持研究。
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引用次数: 0
Improving Leishmania isolation in field conditions: Efficacy of caspofungin against yeasts contamination 提高利什曼原虫田间分离效果:caspofungin对酵母污染的防治效果[j]。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-17 DOI: 10.1016/j.actatropica.2026.107985
Nalia Mekarnia , Pénélope Gillard , Benjamin Aubry , Antoine Huguenin , Philippe M. Loiseau , Jérôme Depaquit
Cutaneous leishmaniasis (CL), a neglected disease prevalent in 88 countries, is commonly caused by Leishmania (L.) major in the Old World, posing significant public health concerns. Isolation from sand flies or infected mammals and in vitro cultivation of Leishmania parasites are critical for epidemiological studies, but these cultures are often compromised by bacterial and fungal contamination, especially when outsourced from vector digestive tracts. While the Leishmania parasite’s natural resistance to antibiotics simplifies bacterial control, most antifungals also inhibit the parasites growth, complicating efforts to manage fungal contamination. This study aimed to identify antifungal agents that could protect Leishmania cultures from yeast contamination with minimal impact on parasite growth. Five antifungal drugs: griseofulvin (GRF), caspofungin diacetate (CSF), 5-fluorocytosine (5-FC), po(ly)vidone-iodine (PVI), and undecylenic acid (UCA) were assessed in vitro for their effects on promastigote forms of L. major. The IC50 values indicated strong antileishmanial activity for 5-FC, GRF, UCA, and PVI (<13 µM), whereas CSF exhibited higher IC50 value (17 µM), suggesting relatively lower toxicity to the parasites. Under continuous CSF exposure, L. major promastigotes demonstrated substantial survival, with only a modest reduction in maximum parasite growth curves (peak of 2.65 × 10⁶ parasites/mL) compared to untreated controls (4.31 × 10⁶ parasites/mL maximum growth). These findings suggest that caspofungin diacetate could be used in the field to decontaminate Leishmania cultures from yeasts without significant parasite loss, facilitating L. major isolation and epidemiological investigations in endemic regions.
皮肤利什曼病(CL)是一种被忽视的疾病,在88个国家流行,通常由旧大陆的主要利什曼原虫(L.)引起,引起重大公共卫生问题。从沙蝇或受感染的哺乳动物中分离和利什曼原虫的体外培养对流行病学研究至关重要,但这些培养往往受到细菌和真菌污染的损害,特别是从病媒消化道外包时。虽然利什曼原虫对抗生素的天然抗性简化了细菌控制,但大多数抗真菌药物也抑制寄生虫的生长,使控制真菌污染的努力复杂化。本研究旨在鉴定能够保护利什曼原虫培养物免受酵母污染而对寄生虫生长影响最小的抗真菌药物。研究了五种抗真菌药物灰黄霉素(GRF)、caspofungin diacetate (CSF)、5-氟胞嘧啶(5-FC)、磷酸维酮碘(PVI)和十一烯酸(UCA)对promastigote型L. major的体外作用。IC50值显示对5-FC、GRF、UCA和PVI具有较强的抗利什曼活性(50值(17µM)),表明对寄生虫的毒性相对较低。在持续接触脑脊液的情况下,promastigotes L.表现出可观的存活率,最大寄生虫生长曲线(峰值为2.65 × 10⁶寄生虫/mL)与未经处理的对照(4.31 × 10⁶寄生虫/mL最大生长)相比,只有适度的减少。这些结果表明,caspofungin diacetate可以在现场用于净化酵母中的利什曼原虫培养物,而不会造成明显的寄生虫损失,从而促进了利什曼原虫在流行地区的分离和流行病学调查。
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引用次数: 0
Molecular detection of Coxiella endosymbionts associated with ixodid ticks recovered from animals and man in Mexico: Phylogeography and haplotype diversity analysis 墨西哥动物和人身上发现的与蜱虫相关的科希氏菌内共生分子检测:系统地理学和单倍型多样性分析。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-17 DOI: 10.1016/j.actatropica.2026.107984
Estefania Grostieta , Beatriz Salceda-Sánchez , Héctor M. Zazueta-Islas , Miguel Tenchipe-Márquez , Laura V. Mondragon-Peña , Joselin Benítez , Paola Yesenia García Castillo , Carlos I. Miranda-Caballero , Gabriela Aguilar-Tipacamú , Miguel A. Alonso-Diaz , Roger I. Rodríguez-Vivas , Jorge L. Chagoya- Fuentes , Edelmira Jácome-Sosa , Herón Huerta , Ingeborg Becker , Sokani Sánchez-Montes
For over 80 years, the genus Coxiella was considered monotypic, comprising only Coxiella burnetii, the aetiological agent of Q fever. Recent studies, however, have revealed several candidate species and genetic lineages associated with ticks, many of which act as endosymbionts that are essential for tick development. This association is particularly notable in the members of the Rhipicephalus sanguineus complex, where Candidatus Coxiella massiliensis (zoonotic) and Candidatus Coxiella mudrowiae (unknown pathogenicity) have been described. Given the close relationship between these ticks, domestic dogs, and humans, active surveillance for Coxiella species of medical and veterinary importance is crucial.
This study evaluated the presence and diversity of Coxiella species in 812 hard ticks: Amblyomma mixtum (n = 23), Rhipicephalus linnaei (n = 762), and R. sanguineus sensu stricto (n = 27) collected from December 2018 to November 2024 parasitizing dogs (n = 418), humans (n = 18), cattle (n = 4), and one cat across 17 states of Mexico.
A fragment (∼1500 base pair) of the Coxiella 16S ribosomal DNA (rDNA) gene was amplified, sequenced, and analysed phylogenetically. Additionally, published records of Coxiella endosymbionts associated with ticks parasitising dogs were compiled. Of 812 samples, 188 tested positive, revealing three Coxiella lineages closely related to known endosymbionts of Rhipicephalus and Amblyomma ticks. A review of 25 studies from across the globe identified four Coxiella taxa in 23 tick species from dogs across 19 countries. This is the first report of Coxiella lineages in dog-associated ticks in Mexico. Our findings expand the known diversity of the genus in the Neotropical region and underscore the need for further research to clarify their ecological roles and potential health implications.
80多年来,Coxiella属被认为是单型的,仅包括Q热的病原Coxiella burnetii。然而,最近的研究已经揭示了与蜱有关的几个候选物种和遗传谱系,其中许多是蜱发育所必需的内共生体。这种关联在血根头菌复合体的成员中尤其显著,其中已经描述了马斯利考克希菌(人畜共患)和莫氏考克希菌(致病性未知)。鉴于这些蜱虫、家养狗和人类之间的密切关系,对具有医学和兽医重要性的科希氏菌物种进行积极监测至关重要。本研究评估了2018年12月至2024年11月在墨西哥17个州收集的812种硬蜱中柯谢氏菌的存在和多样性:混合Amblyomma mixtum (n = 23)、linnai Rhipicephalus (n = 762)和狭义血蜱R. (n = 27),这些蜱分别寄生于狗(n=418)、人(n=18)、牛(n=4)和一只猫。对Coxiella 16S核糖体DNA (rDNA)基因的一个片段(~ 1500碱基对)进行扩增、测序和系统发育分析。此外,还汇编了与蜱寄生犬相关的科希氏菌内共生体的已发表记录。在812份样本中,188份检测呈阳性,揭示了与已知的鼻头蜱和无足蜱内共生体密切相关的三种科希氏菌谱系。一项对全球25项研究的回顾发现,在19个国家的23种狗蜱中发现了4个科西埃氏菌分类群。这是墨西哥首次报道在与狗相关的蜱虫中发现科西拉谱系。我们的发现扩大了该属在新热带地区的已知多样性,并强调需要进一步研究以阐明其生态作用和潜在的健康影响。
{"title":"Molecular detection of Coxiella endosymbionts associated with ixodid ticks recovered from animals and man in Mexico: Phylogeography and haplotype diversity analysis","authors":"Estefania Grostieta ,&nbsp;Beatriz Salceda-Sánchez ,&nbsp;Héctor M. Zazueta-Islas ,&nbsp;Miguel Tenchipe-Márquez ,&nbsp;Laura V. Mondragon-Peña ,&nbsp;Joselin Benítez ,&nbsp;Paola Yesenia García Castillo ,&nbsp;Carlos I. Miranda-Caballero ,&nbsp;Gabriela Aguilar-Tipacamú ,&nbsp;Miguel A. Alonso-Diaz ,&nbsp;Roger I. Rodríguez-Vivas ,&nbsp;Jorge L. Chagoya- Fuentes ,&nbsp;Edelmira Jácome-Sosa ,&nbsp;Herón Huerta ,&nbsp;Ingeborg Becker ,&nbsp;Sokani Sánchez-Montes","doi":"10.1016/j.actatropica.2026.107984","DOIUrl":"10.1016/j.actatropica.2026.107984","url":null,"abstract":"<div><div>For over 80 years, the genus <em>Coxiella</em> was considered monotypic, comprising only <em>Coxiella burnetii</em>, the aetiological agent of Q fever. Recent studies, however, have revealed several candidate species and genetic lineages associated with ticks, many of which act as endosymbionts that are essential for tick development. This association is particularly notable in the members of the <em>Rhipicephalus sanguineus</em> complex, where <em>Candidatus</em> Coxiella massiliensis (zoonotic) and <em>Candidatus</em> Coxiella mudrowiae (unknown pathogenicity) have been described. Given the close relationship between these ticks, domestic dogs, and humans, active surveillance for <em>Coxiella</em> species of medical and veterinary importance is crucial.</div><div>This study evaluated the presence and diversity of <em>Coxiella</em> species in 812 hard ticks: <em>Amblyomma mixtum</em> (<em>n</em> = 23), <em>Rhipicephalus linnaei</em> (<em>n</em> = 762), and <em>R. sanguineus</em> sensu stricto (<em>n</em> = 27) collected from December 2018 to November 2024 parasitizing dogs (<em>n</em> = 418), humans (<em>n</em> = 18), cattle (<em>n</em> = 4), and one cat across 17 states of Mexico.</div><div>A fragment (∼1500 base pair) of the <em>Coxiella</em> 16S ribosomal DNA (rDNA) gene was amplified, sequenced, and analysed phylogenetically. Additionally, published records of <em>Coxiella</em> endosymbionts associated with ticks parasitising dogs were compiled. Of 812 samples, 188 tested positive, revealing three <em>Coxiella</em> lineages closely related to known endosymbionts of <em>Rhipicephalus</em> and <em>Amblyomma</em> ticks. A review of 25 studies from across the globe identified four <em>Coxiella</em> taxa in 23 tick species from dogs across 19 countries. This is the first report of <em>Coxiella</em> lineages in dog-associated ticks in Mexico. Our findings expand the known diversity of the genus in the Neotropical region and underscore the need for further research to clarify their ecological roles and potential health implications.</div></div>","PeriodicalId":7240,"journal":{"name":"Acta tropica","volume":"274 ","pages":"Article 107984"},"PeriodicalIF":2.5,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146002889","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of villin-interacting virulence factors of Blastocystis hominis using yeast two-hybrid screening 利用酵母双杂交筛选鉴定人芽囊菌绒毛相互作用毒力因子。
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-17 DOI: 10.1016/j.actatropica.2026.107986
Yani Zhang, Yuanfeng Wang, Tianmeng Song, Yichen Zhao, Zhenchao Zhang, Xiaowei Tian, Shuai Wang, Zhenke Yang, Xuefang Mei
Blastocystis hominis (B. hominis), one of the most common intestinal protozoa infecting humans worldwide, is associated with gastrointestinal disorders, yet it remains unclear whether it secretes virulence factors that interact with villin, a key cytoskeletal protein essential for brush border homeostasis and epithelial barrier function. In this study, we constructed a high-quality normalized full-length B. hominis cDNA library (capacity 5.2 × 10⁶ CFU; recombination rate 95.8%) and performed yeast two-hybrid screening using villin as bait. Thirty initial positive clones were obtained, and sequencing combined with BLAST identified 24 unique prey proteins. Among these, 11 were in-frame (ORF-true), 8 proteins were selected for pairwise verification, and 6 proteins were ultimately confirmed to specifically interact with villin, including pyridine nucleotide transhydrogenase (XP_014525634), an ATP/GTP-binding protein-like molecule (OAO14457), and four hypothetical proteins (XP_012896330, XP_012895057, XP_012893676, XP_012894607). GO and KEGG analyses performed on the 24 prey proteins indicated enrichment in cellular metabolic processes and membrane-associated pathways. These findings identify multiple B. hominis proteins capable of interacting with villin, provide new insights into parasite-induced epithelial damage, and offer potential biomarkers and candidate targets for drug and vaccine development against blastocystosis.
人芽囊原虫(Blastocystis hominis, b.s hominis)是世界范围内最常见的感染人类的肠道原虫之一,与胃肠道疾病有关,但目前尚不清楚它是否分泌与绒毛蛋白相互作用的毒力因子,绒毛蛋白是毛囊边界稳态和上皮屏障功能所必需的关键细胞骨架蛋白。本研究构建了高质量归一化的人源双歧杆菌全长cDNA文库(容量为5.2 × 10⁶CFU,重组率为95.8%),并以绒毛蛋白为诱饵进行酵母双杂交筛选。获得30个初始阳性克隆,结合BLAST测序鉴定出24种独特的猎物蛋白。其中11个蛋白框内(ORF-true), 8个蛋白进行两两验证,最终确定6个蛋白与vilin特异性相互作用,包括吡呤核苷酸转氢酶(XP_014525634)、ATP/ gtp结合蛋白样分子(OAO14457)和4个假设蛋白(XP_012896330、XP_012895057、XP_012893676、XP_012894607)。对24种猎物蛋白进行的GO和KEGG分析表明,它们在细胞代谢过程和膜相关途径中富集。这些发现确定了多种能够与绒毛蛋白相互作用的人原芽胞杆菌蛋白,为寄生虫诱导的上皮损伤提供了新的见解,并为针对囊胚发育的药物和疫苗开发提供了潜在的生物标志物和候选靶点。
{"title":"Identification of villin-interacting virulence factors of Blastocystis hominis using yeast two-hybrid screening","authors":"Yani Zhang,&nbsp;Yuanfeng Wang,&nbsp;Tianmeng Song,&nbsp;Yichen Zhao,&nbsp;Zhenchao Zhang,&nbsp;Xiaowei Tian,&nbsp;Shuai Wang,&nbsp;Zhenke Yang,&nbsp;Xuefang Mei","doi":"10.1016/j.actatropica.2026.107986","DOIUrl":"10.1016/j.actatropica.2026.107986","url":null,"abstract":"<div><div><em>Blastocystis hominis</em> (<em>B. hominis</em>), one of the most common intestinal protozoa infecting humans worldwide, is associated with gastrointestinal disorders, yet it remains unclear whether it secretes virulence factors that interact with villin, a key cytoskeletal protein essential for brush border homeostasis and epithelial barrier function. In this study, we constructed a high-quality normalized full-length <em>B. hominis</em> cDNA library (capacity 5.2 × 10⁶ CFU; recombination rate 95.8%) and performed yeast two-hybrid screening using villin as bait. Thirty initial positive clones were obtained, and sequencing combined with BLAST identified 24 unique prey proteins. Among these, 11 were in-frame (ORF-true), 8 proteins were selected for pairwise verification, and 6 proteins were ultimately confirmed to specifically interact with villin, including pyridine nucleotide transhydrogenase (XP_014525634), an ATP/GTP-binding protein-like molecule (OAO14457), and four hypothetical proteins (XP_012896330, XP_012895057, XP_012893676, XP_012894607). GO and KEGG analyses performed on the 24 prey proteins indicated enrichment in cellular metabolic processes and membrane-associated pathways. These findings identify multiple <em>B. hominis</em> proteins capable of interacting with villin, provide new insights into parasite-induced epithelial damage, and offer potential biomarkers and candidate targets for drug and vaccine development against blastocystosis.</div></div>","PeriodicalId":7240,"journal":{"name":"Acta tropica","volume":"274 ","pages":"Article 107986"},"PeriodicalIF":2.5,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146002827","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of recombinant Toxoplasma gondii matrix antigen MAG1 for toxoplasmosis screening in HIV/AIDS patients 重组刚地弓形虫基质抗原MAG1对HIV/AIDS患者弓形虫病筛查的评价
IF 2.5 3区 医学 Q2 PARASITOLOGY Pub Date : 2026-01-15 DOI: 10.1016/j.actatropica.2026.107983
Ruenruetai Udonsom , Charoonluk Jirapattharasate , Supaluk Popruk , Sumonmal Uttayamakul , Intira Tantawiwattananon , Manas Kotepui , Sukhontha Siri , Hirotake Mori , Yoshifumi Nishikawa , Aongart Mahittikorn
Timely serodiagnosis of Toxoplasma gondii is critical for HIV/AIDS patients, in whom latent infection can reactivate into life-threatening toxoplasmic encephalitis. This study aimed to evaluate the diagnostic performance of a novel recombinant T. gondii matrix antigen 1 (TgMAG1)-based indirect ELISA and a commercial latex agglutination test (LAT) for detecting anti-T. gondii IgG in HIV/AIDS patients, using the Sabin-Feldman dye test (DT) as the reference standard. A secondary objective was to determine the current prevalence of latent toxoplasmosis in this population in Thailand. We conducted a comparative serological evaluation using 348 residual clinical specimens collected from 2016 to 2019 from HIV/AIDS patients. All samples were tested using the in-house TgMAG1 ELISA, a commercial LAT, and the DT. The sensitivity, specificity, and agreement (kappa statistic) of each index test were calculated against the DT. The DT identified a T. gondii seroprevalence of 12.36% (43/348; 95% CI: 8.94–16.64). Compared to the DT, the TgMAG1-ELISA demonstrated a sensitivity of 72.09% and a specificity of 93.11%, with moderate agreement (κ = 0.598). The LAT showed a similar sensitivity of 69.76% but a higher specificity of 97.04%, achieving substantial agreement with the DT (κ = 0.696). In conclusion, both the TgMAG1-based ELISA and LAT demonstrated high specificity but moderate sensitivity compared to the reference standard. Consequently, while these assays are valuable screening tools in settings lacking the DT, their results require careful interpretation and potential confirmation in high-risk populations.
及时诊断刚地弓形虫对艾滋病毒/艾滋病患者至关重要,潜伏感染可重新激活为危及生命的弓形虫脑炎。本研究旨在评价基于新型重组弓形虫基质抗原1 (TgMAG1)的间接ELISA和商用乳胶凝集试验(LAT)检测抗t的诊断性能。以Sabin-Feldman染色试验(DT)作为参考标准。次要目的是确定泰国这一人群中潜伏弓形虫病的当前流行情况。我们对2016年至2019年收集的348例HIV/AIDS患者临床剩余标本进行了比较血清学评估。所有样品均使用内部TgMAG1 ELISA、商用LAT和DT进行检测。根据DT计算各指标检验的敏感性、特异性和一致性(kappa统计量)。弓形虫血清阳性率为12.36% (43/348;95% CI: 8.94 ~ 16.64)。与DT相比,TgMAG1-ELISA的敏感性为72.09%,特异性为93.11%,一致性中等(κ = 0.598)。LAT的敏感性为69.76%,特异度为97.04%,与DT基本一致(κ = 0.696)。综上所述,与参比标准相比,基于tgmag1的ELISA和LAT均具有较高的特异性,但敏感性中等。因此,虽然这些检测在缺乏DT的环境中是有价值的筛查工具,但它们的结果需要仔细解释和在高风险人群中进行潜在的确认。
{"title":"Evaluation of recombinant Toxoplasma gondii matrix antigen MAG1 for toxoplasmosis screening in HIV/AIDS patients","authors":"Ruenruetai Udonsom ,&nbsp;Charoonluk Jirapattharasate ,&nbsp;Supaluk Popruk ,&nbsp;Sumonmal Uttayamakul ,&nbsp;Intira Tantawiwattananon ,&nbsp;Manas Kotepui ,&nbsp;Sukhontha Siri ,&nbsp;Hirotake Mori ,&nbsp;Yoshifumi Nishikawa ,&nbsp;Aongart Mahittikorn","doi":"10.1016/j.actatropica.2026.107983","DOIUrl":"10.1016/j.actatropica.2026.107983","url":null,"abstract":"<div><div>Timely serodiagnosis of <em>Toxoplasma gondii</em> is critical for HIV/AIDS patients, in whom latent infection can reactivate into life-threatening toxoplasmic encephalitis. This study aimed to evaluate the diagnostic performance of a novel recombinant <em>T. gondii</em> matrix antigen 1 (TgMAG1)-based indirect ELISA and a commercial latex agglutination test (LAT) for detecting anti-<em>T. gondii</em> IgG in HIV/AIDS patients, using the Sabin-Feldman dye test (DT) as the reference standard. A secondary objective was to determine the current prevalence of latent toxoplasmosis in this population in Thailand. We conducted a comparative serological evaluation using 348 residual clinical specimens collected from 2016 to 2019 from HIV/AIDS patients. All samples were tested using the in-house TgMAG1 ELISA, a commercial LAT, and the DT. The sensitivity, specificity, and agreement (kappa statistic) of each index test were calculated against the DT. The DT identified a <em>T. gondii</em> seroprevalence of 12.36% (43/348; 95% CI: 8.94–16.64). Compared to the DT, the TgMAG1-ELISA demonstrated a sensitivity of 72.09% and a specificity of 93.11%, with moderate agreement (κ = 0.598). The LAT showed a similar sensitivity of 69.76% but a higher specificity of 97.04%, achieving substantial agreement with the DT (κ = 0.696). In conclusion, both the TgMAG1-based ELISA and LAT demonstrated high specificity but moderate sensitivity compared to the reference standard. Consequently, while these assays are valuable screening tools in settings lacking the DT, their results require careful interpretation and potential confirmation in high-risk populations.</div></div>","PeriodicalId":7240,"journal":{"name":"Acta tropica","volume":"274 ","pages":"Article 107983"},"PeriodicalIF":2.5,"publicationDate":"2026-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145994070","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Acta tropica
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