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Performance Comparison of Traditional, Nanopolymerized, and Entangled Belousov−Zhabotinsky Self-Oscillating Gels
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-26 DOI: 10.1002/syst.202400060
Zhenfang Cheng, Ling Yuan, Hui Wang, Haodi Yu, Meng Zhang, Irving R Epstein, Tan Gao, Lin Ren, Qingyu Gao

Belousov−Zhabotinsky (BZ) self-oscillating gels exhibit periodic volumetric swelling−deswelling, providing the basis for autonomous soft robots without external control. However, traditional BZ self-oscillating gels suffer from degradation and slow chemo−mechanical response. Here, three types of BZ self-oscillating gels were prepared by adjusting the monomer/crosslinker ratio and using N-isopropylacrylamide nanogels as crosslinker. Compared with traditional gels, the toughness of nanopolymerized and entangled gels was markedly improved and their response to the Ru (III)/Ru (II) alternation was accelerated. The three self-oscillating gels showed different periodic responses in a BZ reaction solution. Entangled gels, as a result of their greater spatial uniformity in energy dissipation and enhanced interconnection between mesopores, respectively, showed the longest lifetime and shortest chemo-mechanical oscillation delay. The synthesis of tougher and faster responding entangled gels expands the function and application of BZ self-oscillating gels.

贝洛索夫-扎博金斯基(Belousov-Zhabotinsky,BZ)自振凝胶表现出周期性的体积膨胀-消肿,为无需外部控制的自主软机器人提供了基础。然而,传统的 BZ 自振荡凝胶存在降解和化学机械响应缓慢的问题。本文通过调整单体/交联剂的比例,以N-异丙基丙烯酰胺纳米凝胶为交联剂,制备了三种类型的BZ自振荡凝胶。与传统凝胶相比,纳米聚合缠结凝胶的韧性明显提高,对Ru(III)/Ru(II)交变的响应速度加快。三种自振荡凝胶在 BZ 反应溶液中表现出不同的周期性响应。缠结凝胶由于能量耗散的空间均匀性更强,介孔之间的相互连接也更紧密,因此寿命最长,化学机械振荡延迟最短。更坚韧、反应更快的缠结凝胶的合成拓展了 BZ 自振荡凝胶的功能和应用。
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引用次数: 0
Phase-Separated Droplets Can Direct the Kinetics of Chemical Reactions Including Polymerization, Self-Replication and Oscillating Networks
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-21 DOI: 10.1002/syst.202400056
Iris B. A. Smokers, Brent S. Visser, Dr. Wojciech P. Lipiński, Dr. Karina K. Nakashima, Dr. Evan Spruijt

Phase-separated compartments can localize (bio)chemical reactions and influence their kinetics. They are believed to play an important role both in extant life in the form of biomolecular condensates and at the origins of life as coacervate protocells. However, experimentally testing the influence of coacervates on different reactions is challenging and time-consuming. We therefore use a numerical model to explore the effect of phase-separated droplets on the kinetics and outcome of different chemical reaction systems, where we vary the coacervate volume and partitioning of reactants. We find that the rate of bimolecular reactions has an optimal dilute/coacervate phase volume ratio for a given reactant partitioning. Furthermore, coacervates can accelerate polymerization and self-replication reactions and lead to formation of longer polymers. Lastly, we find that coacervates can ‘rescue’ oscillating reaction networks in concentration regimes where sustained oscillations do not occur in a single-phase system. Our results indicate that coacervates can direct the outcome of a wide range of reactions and impact fundamental aspects such as yield, reaction pathway selection, product length and emergent functions. This may have far-reaching implications for origins of life, synthetic cells and the fate and function of biological condensates.

相分离隔室可以定位(生物)化学反应并影响其动力学。人们认为,无论是在以生物分子凝聚物形式存在的现存生命中,还是在以凝聚原胞形式存在的生命起源中,它们都扮演着重要的角色。然而,实验测试凝聚态对不同反应的影响既具有挑战性又耗费时间。因此,我们使用一个数值模型来探索相分离液滴对不同化学反应体系的动力学和结果的影响,其中我们改变了凝聚态液滴的体积和反应物的分配。我们发现,在给定的反应物分配条件下,双分子反应的速率有一个最佳的稀释/凝聚相体积比。此外,共蒸物还能加速聚合和自我复制反应,从而形成更长的聚合物。最后,我们还发现,在单相体系中不会出现持续振荡的浓度条件下,凝聚态有机物可以 "拯救 "振荡的反应网络。我们的研究结果表明,共渗物可以引导多种反应的结果,并对产率、反应途径选择、产物长度和新兴功能等基本方面产生影响。这可能会对生命起源、合成细胞以及生物凝聚物的命运和功能产生深远影响。
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引用次数: 0
Heat-Flow-Driven Nonequilibria for Prebiotic Chemistry 前生物化学中的热流驱动非平衡态
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-02 DOI: 10.1002/syst.202400039
Christof B. Mast

The origin of life, being one of the most fascinating questions in science, is increasingly addressed by interdisciplinary research. In addition to developing plausible chemical models for synthesizing the first biomolecules from prebiotic building blocks, searching for suitable and plausible non-equilibrium boundary conditions that drive such reactions is thus a central task in this endeavor. This perspective highlights the remarkably simple yet versatile scenario of heat flows in geologically plausible crack-like compartments as a habitat for prebiotic chemistry. Based on our recent findings, it is discussed how thermophoretically driven systems offer insights into solving key milestones in the origin of life research, such as the template inhibition problem, prebiotic symmetry breaking, and the promotion of prebiotic chemistry by selective enrichment of biochemical precursors. Our results on molecular-selective thermogravitational accumulation, heat flow-induced pH gradients, and environmental cycles are put in the context of other approaches to non-equilibrium systems and prebiotic chemistry. The coupling of heat flows to chemical and physical boundary conditions thus opens up numerous future experimental research avenues, such as the extraction of phosphate from geomaterials or the integration of chemical reaction networks into thermal non-equilibrium systems, offering a promising framework for advancing the field of prebiotic chemistry.

生命起源是科学界最引人入胜的问题之一,越来越多的跨学科研究都在探讨这一问题。因此,除了开发可信的化学模型,从生物前构件中合成首批生物分子外,寻找合适、可信的非平衡边界条件来驱动此类反应也是这项工作的核心任务。从这个角度看,在地质学上看似合理的裂缝状隔间中的热流作为前生物化学的栖息地,是非常简单而又多变的方案。基于我们最近的研究成果,我们讨论了热物理驱动系统如何为解决生命起源研究中的关键里程碑问题(如模板抑制问题、先生物对称性破缺以及通过选择性富集生化前体促进先生物化学)提供见解。我们在分子选择性热重积聚、热流诱导的 pH 梯度和环境循环方面的研究成果,与其他研究非平衡系统和前生物化学的方法相结合。因此,热流与化学和物理边界条件的耦合开辟了许多未来的实验研究途径,如从地质材料中提取磷酸盐或将化学反应网络整合到热非平衡态系统中,为推进前生物化学领域的发展提供了一个前景广阔的框架。
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引用次数: 0
Photoswitchable Surfactants–Are there Alternatives to Azobenzene-Based Systems? 光开关表面活性剂--偶氮苯系物的替代品?
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-29 DOI: 10.1002/syst.202400026
Dr. Marek Bekir, Dr. Johannes Gurke, Dr. Martin Reifarth

Owing to their property to alter their surface-activity upon the irradiation with light, photoswitchable surfactants have gained tremendous interest in colloidal science. Their mere addition to a colloidal system allows, e. g., to obtain control over polyelectrolytes, micro- and nanoscale particles or emulsions. Most literature examples focus on azobenzene-based, or related, systems, which employ a photoisomerization reaction for switching. Other structures, such as spiropyrans, play a subordinate role, although they have gained increasing attention over the past few years. In this perspective article, we want to provide an overview about existing systems of photoswitchable surfactants. We address the issue that alternative photoswitches are given less attention, and what benefits surfactants could possess that are based on said switchable units. With our contribution, we want to broaden the view on stimuli-responsive surfactants – and to provide a guideline for the design of novel structures.

光开关表面活性剂具有在光照射下改变表面活性的特性,因此在胶体科学领域引起了极大的兴趣。只需将它们添加到胶体系统中,就可以控制聚电解质、微米级和纳米级颗粒或乳液等。大多数文献实例都集中在偶氮苯或相关系统上,这些系统采用光异构化反应进行切换。其他结构,如螺丙烷,虽然在过去几年中日益受到关注,但其作用次之。在本视角文章中,我们将概述现有的光开关表面活性剂体系。我们探讨了替代光开关较少受到关注的问题,以及基于上述可切换单元的表面活性剂可以带来哪些益处。我们希望通过这篇文章拓宽人们对刺激响应型表面活性剂的认识,并为新型结构的设计提供指导。
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引用次数: 0
Nonequilibrium Membrane Dynamics Induced by Active Protein Interactions and Chemical Reactions: A Review 活性蛋白质相互作用和化学反应诱导的非平衡膜动力学:综述
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-22 DOI: 10.1002/syst.202400042
Prof. Hiroshi Noguchi

Biomembranes wrapping cells and organelles are not only the partitions that separate the insides but also dynamic fields for biological functions accompanied by membrane shape changes. In this review, we discuss the spatiotemporal patterns and fluctuations of membranes under nonequilibrium conditions. In particular, we focus on theoretical analyses and simulations. Protein active forces enhance or suppress the membrane fluctuations; the membrane height spectra are deviated from the thermal spectra. Protein binding or unbinding to the membrane is activated or inhibited by other proteins and chemical reactions, such as ATP hydrolysis. Such active binding processes can induce traveling waves, Turing patterns, and membrane morphological changes. They can be represented by the continuum reaction-diffusion equations and discrete lattice/particle models with state flips. The effects of structural changes in amphiphilic molecules on the molecular-assembly structures are also discussed.

包裹细胞和细胞器的生物膜不仅是分隔内部的隔板,也是生物功能的动态场,伴随着膜形状的变化。在这篇综述中,我们将讨论非平衡条件下膜的时空模式和波动。我们尤其关注理论分析和模拟。蛋白质活性力增强或抑制膜波动;膜高度谱偏离热谱。其他蛋白质和化学反应(如 ATP 水解)会激活或抑制蛋白质与膜的结合或解除结合。这种活跃的结合过程会引起行波、图灵模式和膜形态变化。它们可以用连续反应-扩散方程和具有状态翻转的离散晶格/粒子模型来表示。此外,还讨论了两亲分子结构变化对分子组装结构的影响。
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引用次数: 0
Molecular Information Processing in a Chemical Reaction Network Using Surface-Mediated Polyelectrolyte Complexation 利用表面介导的聚电解质络合在化学反应网络中处理分子信息
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-21 DOI: 10.1002/syst.202400050
A. Hazal Koyuncu, Giulia Allegri, Dr. Taghi Moazzenzade, Prof. Dr. Jurriaan Huskens, Dr. Saskia Lindhoud, Dr. Albert S. Y. Wong

Biochemical communication is ubiquitous in life. Biology uses chemical reaction networks to regulate concentrations of myriad signaling molecules. Recent advances in supramolecular and systems chemistry demonstrate that feedback mechanisms of such networks can be rationally designed but strategies to transmit and process information encoded in molecules are still in their infancy. Here, we designed a polyelectrolyte reaction network maintained under out-of-equilibrium conditions using pH gradients in flow. The network comprises two weak polyelectrolytes (polyallylamine, PAH, and polyacrylic acid, PAA) in solution and one immobilized on the surface (poly-l-lysine, PLL). We chose PAH and PAA as their complexation process is known to be history-dependent (i. e., the preceding state of the system can determine the next state). Surprisingly, we found that the hysteresis diminished as the PLL-coated surface supported rather than perturbed the formation of the complex. PLL-coated surfaces are further exploited to establish that reversible switching between the assembled and disassembled state of polyelectrolytes can process signals encoded in the frequency and duration of pH pulses. We envision that the strategy employed to modulate information in this polyelectrolyte reaction network could open novel routes to transmit and process molecular information in biologically relevant processes.

生化通讯在生活中无处不在。生物学利用化学反应网络来调节无数信号分子的浓度。超分子化学和系统化学的最新进展表明,此类网络的反馈机制可以合理设计,但传输和处理分子编码信息的策略仍处于起步阶段。在这里,我们设计了一种利用流动中的 pH 梯度在失衡条件下维持的聚电解质反应网络。该网络由两种溶液中的弱聚电解质(聚烯丙基胺 PAH 和聚丙烯酸 PAA)和一种固定在表面的弱聚电解质(聚-l-赖氨酸 PLL)组成。我们选择 PAH 和 PAA 是因为已知它们的络合过程与历史有关(即系统的前一状态可决定后一状态)。出乎意料的是,我们发现由于 PLL 涂层表面支持而不是干扰了复合物的形成,因此滞后现象减弱了。PLL 涂层表面进一步证实,聚电解质在组装和分解状态之间的可逆切换可用于处理 pH 脉冲频率和持续时间中编码的信号。我们设想,在这种聚电解质反应网络中调控信息的策略可以为在生物相关过程中传输和处理分子信息开辟新的途径。
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引用次数: 0
Front Cover: Artificial Molecular Systems for Complex Functions Based on DNA Nanotechnology and Cell-Sized Lipid Vesicles (ChemSystemsChem 4/2024) 封面:基于 DNA 纳米技术和细胞大小脂质囊泡的复杂功能人工分子系统(ChemSystemsChem 4/2024)
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-15 DOI: 10.1002/syst.202480401
Prof. Dr. Yusuke Sato

The front cover illustrates cell-like functional molecular systems based on DNA nanotechnology and lipid vesicles. The base-specific interactions of DNA enable the construction of various functional components that can be integrated into lipid vesicles, aiming to create artificial molecular systems comparable to, or even surpassing, natural molecular systems, such as living cells. The Review by Y. Sato describes the latest achievements in functions realized through the combination of DNA nanotechnology and lipid vesicles.

封面展示了基于 DNA 纳米技术和脂质囊泡的类细胞功能分子系统。通过 DNA 的碱基特异性相互作用,可以构建各种功能元件,并将其整合到脂质囊泡中,从而创造出与活细胞等自然分子系统相媲美甚至超越它们的人工分子系统。Y. Sato 的综述介绍了通过 DNA 纳米技术与脂质囊泡的结合实现功能的最新成果。
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引用次数: 0
Life in Lab: Chemically Fueled Systems Chemistry for Emergent Properties 实验室生活化学燃料系统 新生特性化学
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-09 DOI: 10.1002/syst.202400028
Sudeep Koppayithodi, Prerna Ranasingh, Dr. Nishant Singh

Understanding the emergence of complex properties in dissipative non-equilibrium systems is crucial for unraveling the mysteries of life processes. The review focuses on the documented research on chemically fueled autonomous systems, self-sorting towards compartmentalization, self-replication via autocatalysis, and rhythmic chemical oscillators. In addition to that, the review also discusses newly introduced reactions and dynamic combinatorial libraries in dissipative systems.

了解耗散非平衡系统复杂特性的出现对于揭开生命过程的奥秘至关重要。这篇综述重点介绍了有关化学燃料自主系统、实现分区的自我排序、通过自催化实现自我复制以及有节奏的化学振荡器的文献研究。除此之外,综述还讨论了耗散系统中新引入的反应和动态组合库。
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引用次数: 0
A Chemical Mechanism for the Bistable-to-Oscillatory Transition in Colloidal Aggregates of Silver Phosphate 磷酸银胶体聚集体从双稳态到振荡转变的化学机制
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-18 DOI: 10.1002/syst.202400024
María Antonieta Sánchez-Farrán, Ali Borhan, Ayusman Sen, Vincent H. Crespi

We previously reported collective behavior in colloidal aggregates of silver phosphate in H2O2 and under UV light. Diffusiophoretic interactions between aggregates lead to non-linear behavior such as oscillations and synchronization, in which oscillation frequencies increase with H2O2 concentration. The aggregates transition between schooling and dispersed behaviors with incipient spatiotemporal correlations. We identified a kinetic model that maps the chemical species that are thought to underlie non-linear phenomena in the colloidal aggregates, i. e. adsorbed oxygen species *OOH and *O. We investigate the emergent dynamics for the simplest case, the coupling of two otherwise bistable clusters. Two coupling schemes are proposed and we find that – depending on whether the coupling is excitatory or inhibitory – the clusters may oscillate with zero or π phase shift.

我们以前曾报道过磷酸银胶体聚集体在 H2O2 和紫外线照射下的集体行为。聚集体之间的扩散性相互作用导致了振荡和同步等非线性行为,其中振荡频率随 H2O2 浓度的增加而增加。聚集体在游动和分散行为之间过渡,并具有初步的时空相关性。我们确定了一个动力学模型,该模型映射了被认为是胶体聚集体非线性现象基础的化学物种,即吸附氧物种 *OOH- 和 *O。我们研究了最简单情况下的突发动力学,即两个原本双稳态团簇的耦合。我们提出了两种耦合方案,并发现--取决于耦合是兴奋性的还是抑制性的--团簇可能以零或 π 相移的方式振荡。
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引用次数: 0
Photostimuli Reach a Selective Intermediate in a Microflow: One-Shot Transformation from a Supramolecular Co-Polymer to a Micro-Disk Structure 光刺激到达微流中的选择性中间体:从超分子共聚物到微盘结构的一次转化
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-10 DOI: 10.1002/syst.202400031
Akira Kaneyoshi, Shota Nomura, Takato Maeda, Dr. Takahiro Kusukawa, Dr. Yoshihiro Kikkawa, Dr. Munenori Numata

In supramolecular chemistry, photostimulants are generally combined with a static solution under thermodynamic equilibrium with no time progression. After reaching the thermodynamic state, self-assembly events contain various species–a mixture of component molecules, intermediate species, and completed assemblies–which light reaches uniformly. In this study, snapshot control of supramolecular polymerization was first combined with pinpoint photoirradiation using a microflow system. Employing the azobenzene derivative trans-C3NO as a monomer, a snapshot moment of supramolecular polymerization along a microflow channel was selectively irradiated with UV light at 365 nm in a space-resolved manner, so that the monomers, intermediates (oligomers), or extended supramolecular polymers were selectively exposed to light stimuli. We found that a pinpoint photostimulus to each snapshot moment had a pronounced effect on the kinetic pathway by tuning the timing at which the snapshot moment of cis-C3NO was generated. Upon irradiation in the upstream region, in the very early stages before initiating polymerization, supramolecular polymerization was suppressed by generating a less reactive cis-C3NO monomer. However, photoirradiation does not affect the supramolecular polymers in the downstream region because of their stiff nature. Remarkably, when irradiating the middle stream region involving a soft-natured intermediate species, supramolecular copolymerization occurred through in situ conversion from trans- and cis-C3NO inside the primitive supramolecular polymer. Loose monomer stacking in the primitive aggregate endows it with mechanoresponsiveness. Under the influence of shear force in a Hagen–Poiseuille flow, the resultant supramolecular copolymers containing geometrically different cis-isomers were rolled up and transformed into a micrometer-sized disk-like structure. During the in situ supramolecular copolymerization and transformation to the disk structure, a liquid–liquid interface generated in the laminar flow acted as a template to fix the orientation of the monomers and supramolecular polymers, leading to the uniform disk formation. Furthermore, monomers’ orientation in the aligned supramolecular polymers are fixed on the interface, on which light is always irradiated in an anisotropic manner. This results in both complexity at the molecular level and long-range structural order such as regular rolling up at the micrometer range over the molecular scale. By incorporating the photostimulus system, microflow extends its potential for supramolecular chemistry.

在超分子化学中,光刺激剂通常与热力学平衡状态下的静态溶液相结合,没有时间进程。在本研究中,利用微流系统首次将超分子聚合的快照控制与精确光照射相结合。利用偶氮苯衍生物反式-C3NO 作为单体,以空间分辨的方式选择性地用波长为 365 纳米的紫外线照射超分子聚合的快照时刻,从而使单体、中间体(低聚物)或扩展的超分子聚合物选择性地受到光刺激。我们发现,通过调整顺式-C3NO 的快照时刻产生的时间,对每个快照时刻进行精确的光刺激对动力学途径有明显的影响。
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引用次数: 0
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