Zhenfang Cheng, Ling Yuan, Hui Wang, Haodi Yu, Meng Zhang, Irving R Epstein, Tan Gao, Lin Ren, Qingyu Gao
Belousov−Zhabotinsky (BZ) self-oscillating gels exhibit periodic volumetric swelling−deswelling, providing the basis for autonomous soft robots without external control. However, traditional BZ self-oscillating gels suffer from degradation and slow chemo−mechanical response. Here, three types of BZ self-oscillating gels were prepared by adjusting the monomer/crosslinker ratio and using N-isopropylacrylamide nanogels as crosslinker. Compared with traditional gels, the toughness of nanopolymerized and entangled gels was markedly improved and their response to the Ru (III)/Ru (II) alternation was accelerated. The three self-oscillating gels showed different periodic responses in a BZ reaction solution. Entangled gels, as a result of their greater spatial uniformity in energy dissipation and enhanced interconnection between mesopores, respectively, showed the longest lifetime and shortest chemo-mechanical oscillation delay. The synthesis of tougher and faster responding entangled gels expands the function and application of BZ self-oscillating gels.
{"title":"Performance Comparison of Traditional, Nanopolymerized, and Entangled Belousov−Zhabotinsky Self-Oscillating Gels","authors":"Zhenfang Cheng, Ling Yuan, Hui Wang, Haodi Yu, Meng Zhang, Irving R Epstein, Tan Gao, Lin Ren, Qingyu Gao","doi":"10.1002/syst.202400060","DOIUrl":"https://doi.org/10.1002/syst.202400060","url":null,"abstract":"<p>Belousov−Zhabotinsky (BZ) self-oscillating gels exhibit periodic volumetric swelling−deswelling, providing the basis for autonomous soft robots without external control. However, traditional BZ self-oscillating gels suffer from degradation and slow chemo−mechanical response. Here, three types of BZ self-oscillating gels were prepared by adjusting the monomer/crosslinker ratio and using N-isopropylacrylamide nanogels as crosslinker. Compared with traditional gels, the toughness of nanopolymerized and entangled gels was markedly improved and their response to the Ru (III)/Ru (II) alternation was accelerated. The three self-oscillating gels showed different periodic responses in a BZ reaction solution. Entangled gels, as a result of their greater spatial uniformity in energy dissipation and enhanced interconnection between mesopores, respectively, showed the longest lifetime and shortest chemo-mechanical oscillation delay. The synthesis of tougher and faster responding entangled gels expands the function and application of BZ self-oscillating gels.</p>","PeriodicalId":72566,"journal":{"name":"ChemSystemsChem","volume":"7 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143119445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Iris B. A. Smokers, Brent S. Visser, Dr. Wojciech P. Lipiński, Dr. Karina K. Nakashima, Dr. Evan Spruijt
Phase-separated compartments can localize (bio)chemical reactions and influence their kinetics. They are believed to play an important role both in extant life in the form of biomolecular condensates and at the origins of life as coacervate protocells. However, experimentally testing the influence of coacervates on different reactions is challenging and time-consuming. We therefore use a numerical model to explore the effect of phase-separated droplets on the kinetics and outcome of different chemical reaction systems, where we vary the coacervate volume and partitioning of reactants. We find that the rate of bimolecular reactions has an optimal dilute/coacervate phase volume ratio for a given reactant partitioning. Furthermore, coacervates can accelerate polymerization and self-replication reactions and lead to formation of longer polymers. Lastly, we find that coacervates can ‘rescue’ oscillating reaction networks in concentration regimes where sustained oscillations do not occur in a single-phase system. Our results indicate that coacervates can direct the outcome of a wide range of reactions and impact fundamental aspects such as yield, reaction pathway selection, product length and emergent functions. This may have far-reaching implications for origins of life, synthetic cells and the fate and function of biological condensates.
{"title":"Phase-Separated Droplets Can Direct the Kinetics of Chemical Reactions Including Polymerization, Self-Replication and Oscillating Networks","authors":"Iris B. A. Smokers, Brent S. Visser, Dr. Wojciech P. Lipiński, Dr. Karina K. Nakashima, Dr. Evan Spruijt","doi":"10.1002/syst.202400056","DOIUrl":"https://doi.org/10.1002/syst.202400056","url":null,"abstract":"<p>Phase-separated compartments can localize (bio)chemical reactions and influence their kinetics. They are believed to play an important role both in extant life in the form of biomolecular condensates and at the origins of life as coacervate protocells. However, experimentally testing the influence of coacervates on different reactions is challenging and time-consuming. We therefore use a numerical model to explore the effect of phase-separated droplets on the kinetics and outcome of different chemical reaction systems, where we vary the coacervate volume and partitioning of reactants. We find that the rate of bimolecular reactions has an optimal dilute/coacervate phase volume ratio for a given reactant partitioning. Furthermore, coacervates can accelerate polymerization and self-replication reactions and lead to formation of longer polymers. Lastly, we find that coacervates can ‘rescue’ oscillating reaction networks in concentration regimes where sustained oscillations do not occur in a single-phase system. Our results indicate that coacervates can direct the outcome of a wide range of reactions and impact fundamental aspects such as yield, reaction pathway selection, product length and emergent functions. This may have far-reaching implications for origins of life, synthetic cells and the fate and function of biological condensates.</p>","PeriodicalId":72566,"journal":{"name":"ChemSystemsChem","volume":"7 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/syst.202400056","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143117525","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The origin of life, being one of the most fascinating questions in science, is increasingly addressed by interdisciplinary research. In addition to developing plausible chemical models for synthesizing the first biomolecules from prebiotic building blocks, searching for suitable and plausible non-equilibrium boundary conditions that drive such reactions is thus a central task in this endeavor. This perspective highlights the remarkably simple yet versatile scenario of heat flows in geologically plausible crack-like compartments as a habitat for prebiotic chemistry. Based on our recent findings, it is discussed how thermophoretically driven systems offer insights into solving key milestones in the origin of life research, such as the template inhibition problem, prebiotic symmetry breaking, and the promotion of prebiotic chemistry by selective enrichment of biochemical precursors. Our results on molecular-selective thermogravitational accumulation, heat flow-induced pH gradients, and environmental cycles are put in the context of other approaches to non-equilibrium systems and prebiotic chemistry. The coupling of heat flows to chemical and physical boundary conditions thus opens up numerous future experimental research avenues, such as the extraction of phosphate from geomaterials or the integration of chemical reaction networks into thermal non-equilibrium systems, offering a promising framework for advancing the field of prebiotic chemistry.
{"title":"Heat-Flow-Driven Nonequilibria for Prebiotic Chemistry","authors":"Christof B. Mast","doi":"10.1002/syst.202400039","DOIUrl":"https://doi.org/10.1002/syst.202400039","url":null,"abstract":"<p>The origin of life, being one of the most fascinating questions in science, is increasingly addressed by interdisciplinary research. In addition to developing plausible chemical models for synthesizing the first biomolecules from prebiotic building blocks, searching for suitable and plausible non-equilibrium boundary conditions that drive such reactions is thus a central task in this endeavor. This perspective highlights the remarkably simple yet versatile scenario of heat flows in geologically plausible crack-like compartments as a habitat for prebiotic chemistry. Based on our recent findings, it is discussed how thermophoretically driven systems offer insights into solving key milestones in the origin of life research, such as the template inhibition problem, prebiotic symmetry breaking, and the promotion of prebiotic chemistry by selective enrichment of biochemical precursors. Our results on molecular-selective thermogravitational accumulation, heat flow-induced pH gradients, and environmental cycles are put in the context of other approaches to non-equilibrium systems and prebiotic chemistry. The coupling of heat flows to chemical and physical boundary conditions thus opens up numerous future experimental research avenues, such as the extraction of phosphate from geomaterials or the integration of chemical reaction networks into thermal non-equilibrium systems, offering a promising framework for advancing the field of prebiotic chemistry.</p>","PeriodicalId":72566,"journal":{"name":"ChemSystemsChem","volume":"6 5","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/syst.202400039","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142233166","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dr. Marek Bekir, Dr. Johannes Gurke, Dr. Martin Reifarth
Owing to their property to alter their surface-activity upon the irradiation with light, photoswitchable surfactants have gained tremendous interest in colloidal science. Their mere addition to a colloidal system allows, e. g., to obtain control over polyelectrolytes, micro- and nanoscale particles or emulsions. Most literature examples focus on azobenzene-based, or related, systems, which employ a photoisomerization reaction for switching. Other structures, such as spiropyrans, play a subordinate role, although they have gained increasing attention over the past few years. In this perspective article, we want to provide an overview about existing systems of photoswitchable surfactants. We address the issue that alternative photoswitches are given less attention, and what benefits surfactants could possess that are based on said switchable units. With our contribution, we want to broaden the view on stimuli-responsive surfactants – and to provide a guideline for the design of novel structures.
{"title":"Photoswitchable Surfactants–Are there Alternatives to Azobenzene-Based Systems?","authors":"Dr. Marek Bekir, Dr. Johannes Gurke, Dr. Martin Reifarth","doi":"10.1002/syst.202400026","DOIUrl":"https://doi.org/10.1002/syst.202400026","url":null,"abstract":"<p>Owing to their property to alter their surface-activity upon the irradiation with light, photoswitchable surfactants have gained tremendous interest in colloidal science. Their mere addition to a colloidal system allows, e. g., to obtain control over polyelectrolytes, micro- and nanoscale particles or emulsions. Most literature examples focus on azobenzene-based, or related, systems, which employ a photoisomerization reaction for switching. Other structures, such as spiropyrans, play a subordinate role, although they have gained increasing attention over the past few years. In this perspective article, we want to provide an overview about existing systems of photoswitchable surfactants. We address the issue that alternative photoswitches are given less attention, and what benefits surfactants could possess that are based on said switchable units. With our contribution, we want to broaden the view on stimuli-responsive surfactants – and to provide a guideline for the design of novel structures.</p>","PeriodicalId":72566,"journal":{"name":"ChemSystemsChem","volume":"6 5","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/syst.202400026","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142233177","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Biomembranes wrapping cells and organelles are not only the partitions that separate the insides but also dynamic fields for biological functions accompanied by membrane shape changes. In this review, we discuss the spatiotemporal patterns and fluctuations of membranes under nonequilibrium conditions. In particular, we focus on theoretical analyses and simulations. Protein active forces enhance or suppress the membrane fluctuations; the membrane height spectra are deviated from the thermal spectra. Protein binding or unbinding to the membrane is activated or inhibited by other proteins and chemical reactions, such as ATP hydrolysis. Such active binding processes can induce traveling waves, Turing patterns, and membrane morphological changes. They can be represented by the continuum reaction-diffusion equations and discrete lattice/particle models with state flips. The effects of structural changes in amphiphilic molecules on the molecular-assembly structures are also discussed.
包裹细胞和细胞器的生物膜不仅是分隔内部的隔板,也是生物功能的动态场,伴随着膜形状的变化。在这篇综述中,我们将讨论非平衡条件下膜的时空模式和波动。我们尤其关注理论分析和模拟。蛋白质活性力增强或抑制膜波动;膜高度谱偏离热谱。其他蛋白质和化学反应(如 ATP 水解)会激活或抑制蛋白质与膜的结合或解除结合。这种活跃的结合过程会引起行波、图灵模式和膜形态变化。它们可以用连续反应-扩散方程和具有状态翻转的离散晶格/粒子模型来表示。此外,还讨论了两亲分子结构变化对分子组装结构的影响。
{"title":"Nonequilibrium Membrane Dynamics Induced by Active Protein Interactions and Chemical Reactions: A Review","authors":"Prof. Hiroshi Noguchi","doi":"10.1002/syst.202400042","DOIUrl":"10.1002/syst.202400042","url":null,"abstract":"<p>Biomembranes wrapping cells and organelles are not only the partitions that separate the insides but also dynamic fields for biological functions accompanied by membrane shape changes. In this review, we discuss the spatiotemporal patterns and fluctuations of membranes under nonequilibrium conditions. In particular, we focus on theoretical analyses and simulations. Protein active forces enhance or suppress the membrane fluctuations; the membrane height spectra are deviated from the thermal spectra. Protein binding or unbinding to the membrane is activated or inhibited by other proteins and chemical reactions, such as ATP hydrolysis. Such active binding processes can induce traveling waves, Turing patterns, and membrane morphological changes. They can be represented by the continuum reaction-diffusion equations and discrete lattice/particle models with state flips. The effects of structural changes in amphiphilic molecules on the molecular-assembly structures are also discussed.</p>","PeriodicalId":72566,"journal":{"name":"ChemSystemsChem","volume":"7 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/syst.202400042","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141815102","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Hazal Koyuncu, Giulia Allegri, Dr. Taghi Moazzenzade, Prof. Dr. Jurriaan Huskens, Dr. Saskia Lindhoud, Dr. Albert S. Y. Wong
Biochemical communication is ubiquitous in life. Biology uses chemical reaction networks to regulate concentrations of myriad signaling molecules. Recent advances in supramolecular and systems chemistry demonstrate that feedback mechanisms of such networks can be rationally designed but strategies to transmit and process information encoded in molecules are still in their infancy. Here, we designed a polyelectrolyte reaction network maintained under out-of-equilibrium conditions using pH gradients in flow. The network comprises two weak polyelectrolytes (polyallylamine, PAH, and polyacrylic acid, PAA) in solution and one immobilized on the surface (poly-l-lysine, PLL). We chose PAH and PAA as their complexation process is known to be history-dependent (i. e., the preceding state of the system can determine the next state). Surprisingly, we found that the hysteresis diminished as the PLL-coated surface supported rather than perturbed the formation of the complex. PLL-coated surfaces are further exploited to establish that reversible switching between the assembled and disassembled state of polyelectrolytes can process signals encoded in the frequency and duration of pH pulses. We envision that the strategy employed to modulate information in this polyelectrolyte reaction network could open novel routes to transmit and process molecular information in biologically relevant processes.
{"title":"Molecular Information Processing in a Chemical Reaction Network Using Surface-Mediated Polyelectrolyte Complexation","authors":"A. Hazal Koyuncu, Giulia Allegri, Dr. Taghi Moazzenzade, Prof. Dr. Jurriaan Huskens, Dr. Saskia Lindhoud, Dr. Albert S. Y. Wong","doi":"10.1002/syst.202400050","DOIUrl":"10.1002/syst.202400050","url":null,"abstract":"<p>Biochemical communication is ubiquitous in life. Biology uses chemical reaction networks to regulate concentrations of myriad signaling molecules. Recent advances in supramolecular and systems chemistry demonstrate that feedback mechanisms of such networks can be rationally designed but strategies to transmit and process information encoded in molecules are still in their infancy. Here, we designed a polyelectrolyte reaction network maintained under out-of-equilibrium conditions using pH gradients in flow. The network comprises two weak polyelectrolytes (polyallylamine, PAH, and polyacrylic acid, PAA) in solution and one immobilized on the surface (poly-l-lysine, PLL). We chose PAH and PAA as their complexation process is known to be history-dependent (<i>i. e</i>., the preceding state of the system can determine the next state). Surprisingly, we found that the hysteresis diminished as the PLL-coated surface supported rather than perturbed the formation of the complex. PLL-coated surfaces are further exploited to establish that reversible switching between the assembled and disassembled state of polyelectrolytes can process signals encoded in the frequency and duration of pH pulses. We envision that the strategy employed to modulate information in this polyelectrolyte reaction network could open novel routes to transmit and process molecular information in biologically relevant processes.</p>","PeriodicalId":72566,"journal":{"name":"ChemSystemsChem","volume":"6 6","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-07-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/syst.202400050","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141818800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The front cover illustrates cell-like functional molecular systems based on DNA nanotechnology and lipid vesicles. The base-specific interactions of DNA enable the construction of various functional components that can be integrated into lipid vesicles, aiming to create artificial molecular systems comparable to, or even surpassing, natural molecular systems, such as living cells. The Review by Y. Sato describes the latest achievements in functions realized through the combination of DNA nanotechnology and lipid vesicles.