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Microscale 3-D Capacitance Tomography with a CMOS Sensor Array. 使用 CMOS 传感器阵列的微米级三维电容断层扫描。
Manar Abdelatty, Joseph Incandela, Kangping Hu, Joseph W Larkin, Sherief Reda, Jacob K Rosenstein

Electrical capacitance tomography (ECT) is a non-optical imaging technique in which a map of the interior permittivity of a volume is estimated by making capacitance measurements at its boundary and solving an inverse problem. While previous ECT demonstrations have often been at centimeter scales, ECT is not limited to macroscopic systems. In this paper, we demonstrate ECT imaging of polymer microspheres and bacterial biofilms using a CMOS microelectrode array, achieving spatial resolution of 10 microns. Additionally, we propose a deep learning architecture and an improved multi-objective training scheme for reconstructing out-of-plane permittivity maps from the sensor measurements. Experimental results show that the proposed approach is able to resolve microscopic 3-D structures, achieving 91.5% prediction accuracy on the microsphere dataset and 82.7% on the biofilm dataset, including an average of 4.6% improvement over baseline computational methods.

电容层析成像(ECT)是一种非光学成像技术,通过在边界进行电容测量并求解逆问题,可以估算出一个体积的内部介电常数图。虽然以前的 ECT 演示通常是在厘米尺度上进行的,但 ECT 并不局限于宏观系统。在本文中,我们利用 CMOS 微电极阵列演示了聚合物微球和细菌生物膜的 ECT 成像,实现了 10 微米的空间分辨率。此外,我们还提出了一种深度学习架构和改进的多目标训练方案,用于根据传感器测量结果重建面外介电常数图。实验结果表明,所提出的方法能够解析微观三维结构,在微球数据集上实现了 91.5% 的预测准确率,在生物膜数据集上实现了 82.7% 的预测准确率,与基线计算方法相比平均提高了 4.6%。
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引用次数: 0
Programmable Electrochemical Stimulation on a Large-Scale CMOS Microelectrode Array. 大规模 CMOS 微电极阵列上的可编程电化学刺激。
Pushkaraj S Joshi, Kangping Hu, Joseph W Larkin, Jacob K Rosenstein

In this paper we present spatio-temporally controlled electrochemical stimulation of aqueous samples using an integrated CMOS microelectrode array with 131,072 pixels. We demonstrate programmable gold electrodeposition in arbitrary spatial patterns, controllable electrolysis to produce microscale hydrogen bubbles, and spatially targeted electrochemical pH modulation. Dense spatially-addressable electrochemical stimulation is important for a wide range of bioelectronics applications.

在本文中,我们介绍了利用具有 131,072 个像素的集成 CMOS 微电极阵列对水性样品进行时空控制的电化学刺激。我们展示了任意空间模式下的可编程金电沉积、产生微尺度氢气泡的可控电解以及空间定向电化学 pH 值调制。密集的空间定向电化学刺激对于广泛的生物电子学应用非常重要。
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引用次数: 0
Design and Simulation of a Low Power 384-channel Actively Multiplexed Neural Interface. 低功耗384通道主动复用神经接口的设计与仿真。
Gabriella Shull, Yieljae Shin, Jonathan Viventi, Thomas Jochum, James Morizio, Kyung Jin Seo, Hui Fang

Brain computer interfaces (BCIs) provide clinical benefits including partial restoration of lost motor control, vision, speech, and hearing. A fundamental limitation of existing BCIs is their inability to span several areas (> cm2) of the cortex with fine (<100 μm) resolution. One challenge of scaling neural interfaces is output wiring and connector sizes as each channel must be independently routed out of the brain. Time division multiplexing (TDM) overcomes this by enabling several channels to share the same output wire at the cost of added noise. This work leverages a 130-nm CMOS process and transfer printing to design and simulate a 384-channel actively multiplexed array, which minimizes noise by adding front end filtering and amplification to every electrode site (pixel). The pixels are 50 μm × 50 μm and enable recording of all 384 channels at 30 kHz with a gain of 22.3 dB, noise of 9.57 μV rms, bandwidth of 0.1 Hz - 10 kHz, while only consuming 0.63 μW/channel. This work can be applied broadly across neural interfaces to create high channel-count arrays and ultimately improve BCIs.

脑机接口(bci)提供临床益处,包括部分恢复失去的运动控制,视觉,语言和听力。现有脑机接口的一个基本限制是它们无法跨越几个区域(> cm2)的精细(
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引用次数: 0
Estimating Intrinsic Manifold Dimensionality to Classify Task-Related Information in Human and Non-Human Primate Data. 估计人类和非人类灵长类动物数据中任务相关信息的内在多维度。
Zachary Bretton-Granatoor, Hannah Stealey, Samantha R Santacruz, Jarrod A Lewis-Peacock

Feature selection, or dimensionality reduction, has become a standard step in reducing large-scale neural datasets into usable signals for brain-machine interface and neurofeedback decoders. Current techniques in fMRI data reduce the number of voxels (features) by performing statistics on individual voxels or using traditional techniques that utilize linear combinations of features (e.g., principal component analysis (PCA)). However, these methods often do not account for the cross-correlations found across voxels and do not sufficiently reduce the feature space to support efficient real-time feedback. To overcome these limitations, we propose using factor analysis on fMRI data. This technique has become increasingly popular for extracting a minimal number of latent features to explain high-dimensional data in non-human primates (NHPs). Here, we demonstrate these methods in both NHP and human data. In NHP subjects (n=2), we reduced the number of features to an average of 26.86% and 14.86% of the total feature space to build our multinomial classifier. In one NHP subject, the average accuracy of classifying eight target locations over 64 sessions was 62.43% (+/-6.19%) compared to a PCA-based classifier with 60.26% (+/-6.02%). In healthy fMRI subjects, we reduced the feature space to an average of 0.33% of the initial space. Group average (n=5) accuracy of FA-based category classification was 74.33% (+/- 4.91%) compared to a PCA-based classifier with 68.42% (+/-4.79%). FA-based classifiers can maintain the performance fidelity observed with PCA-based decoders. Importantly, FA-based methods allow researchers to address specific hypotheses about how underlying neural activity relates to behavior.

特征选择,或降维,已经成为将大规模神经数据集简化为脑机接口和神经反馈解码器可用信号的标准步骤。fMRI数据的当前技术通过对单个体素进行统计或使用利用特征线性组合的传统技术(例如,主成分分析(PCA))来减少体素(特征)的数量。然而,这些方法通常没有考虑到体素之间的相互关联,也没有充分减少特征空间来支持有效的实时反馈。为了克服这些限制,我们建议对fMRI数据进行因子分析。这种技术在提取最小数量的潜在特征来解释非人灵长类动物(NHPs)的高维数据方面越来越受欢迎。在这里,我们在NHP和人类数据中展示了这些方法。在NHP受试者(n=2)中,我们将特征数量平均减少到总特征空间的26.86%和14.86%,以构建我们的多项分类器。在一名NHP受试者中,在64个会话中对8个目标位置进行分类的平均准确率为62.43%(+/-6.19%),而基于pca的分类器的准确率为60.26%(+/-6.02%)。在健康的fMRI受试者中,我们将特征空间缩小到初始空间的平均0.33%。基于fa的分类器组平均准确率(n=5)为74.33%(+/- 4.91%),而基于pca的分类器组平均准确率为68.42%(+/-4.79%)。基于fa的分类器可以保持基于pca的解码器观察到的性能保真度。重要的是,基于fa的方法允许研究人员解决关于潜在神经活动如何与行为相关的特定假设。
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引用次数: 0
FlowMorph: Morphological Segmentation of Ultrasound-Monitored Spinal Cord Microcirculation. 血流形态:超声监测脊髓微循环的形态学分割。
Denis Routkevitch, Andrew M Hersh, Kelley M Kempski, Max Kerensky, Nicholas Theodore, Nitish V Thakor, Amir Manbachi

Imaging of spinal cord microvasculature holds great potential in directing critical care management of spinal cord injury (SCI). Traditionally, contrast agents are preferred for imaging of the spinal cord vasculature, which is disadvantageous for long-term monitoring of injury. Here, we present FlowMorph, an algorithm that uses mathematical morphology techniques to segment non-contrast Doppler-based videos of rat spinal cord. Using the segmentation, it measures single-vessel parameters such as flow velocity, rate, and radius, with visible cardiac cycles in individual vessels showcasing the spatiotemporal resolution. The segmentation outlines vessels well with little extraneous labeling, and outlines are smooth through time. Radius measurements of perforating vessels are similar to what is seen in the literature through other methods. Verification of the algorithm through comparison to manual measurement and in vitro microphantom standards highlights points of future improvement. This method will be vital for future work studying the vascular effects of SCI and can be adopted to other species as well.

脊髓微血管成像在指导脊髓损伤(SCI)的重症监护管理方面具有巨大的潜力。传统上,造影剂首选用于脊髓血管成像,这不利于长期监测损伤。在这里,我们提出了FlowMorph,一种使用数学形态学技术来分割大鼠脊髓非对比多普勒视频的算法。通过分割,它测量单个血管的参数,如流速、速率和半径,并在单个血管中显示可见的心脏周期,以显示时空分辨率。分割血管轮廓很好,几乎没有多余的标记,轮廓随着时间的推移是平滑的。穿孔血管的半径测量与文献中通过其他方法看到的相似。通过与人工测量和体外微影标准的比较验证了该算法,突出了未来改进的重点。该方法对今后研究脊髓损伤血管效应具有重要意义,也可应用于其他物种。
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引用次数: 2
A modulated template-matching approach to improve spike sorting of bursting neurons. 一种改进爆裂神经元尖峰排序的调制模板匹配方法。
Pub Date : 2021-12-23 eCollection Date: 2021-01-01 DOI: 10.1109/BioCAS49922.2021.9644995
Payam S Shabestari, Alessio P Buccino, Sreedhar S Kumar, Alessandra Pedrocchi, Andreas Hierlemann

In extracellular neural electrophysiology, individual spikes have to be assigned to their cell of origin in a procedure called "spike sorting". Spike sorting is an unsupervised problem, since no ground-truth information is generally available. Here, we focus on improving spike sorting performance, particularly during periods of high synchronous activity or so-called "bursting". Bursting entails systematic changes in spike shapes and amplitudes and remains a challenge for current spike sorting schemes. We use realistic simulated bursting recordings of high-density micro-electrode arrays (HD-MEAs) and we present a fully automated algorithm based on template matching with a focus on recovering missed spikes during bursts. To compare and benchmark spike-sorting performance after applying our method, we used ground-truth information of simulated recordings. We show that our approach can be effective in improving spike sorting performance during bursting. Further validation with experimental recordings is necessary.

在细胞外神经电生理学中,单个的尖峰必须通过一个称为“尖峰分选”的过程被分配到它们的起源细胞。尖峰排序是一个无监督的问题,因为通常没有真实的信息可用。在这里,我们专注于提高峰值排序性能,特别是在高同步活动或所谓的“爆发”期间。爆发需要在峰值形状和振幅的系统变化,仍然是当前的峰值排序方案的挑战。我们使用高密度微电极阵列(hd - mea)的真实模拟爆炸记录,并提出了一种基于模板匹配的全自动算法,重点是恢复爆炸期间缺失的尖峰。为了比较和测试应用我们的方法后的峰值排序性能,我们使用了模拟录音的真值信息。我们表明,我们的方法可以有效地提高爆炸时的尖峰分类性能。有必要用实验记录进一步验证。
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引用次数: 3
Automated Multiplexed Potentiostat System (AMPS) for High-Throughput Characterization of Neural Interfaces. 用于神经接口高通量表征的自动多重恒电位仪系统 (AMPS)。
Travis L Massey, Jeremy R Gleick, Razi-Ul M Haque

Neural interfaces with increasing channel counts require a scalable means of testing. While multiplexed potentiostats have long been the solution to this problem, most have been dedicated to one specific probe design or potentiostat, limited in the electrochemical techniques available, inordinately expensive, or they support multiplexing of too few channels. We present the design of an automated multiplexed potentiostat system that addresses these limitations-it is easily generalizable to any probe and potentiostat, supports any electrochemical technique available with the potentiostat, is low-cost, and can readily be expanded to hundreds of channels with support for multiple simultaneous potentiostats. This paper discusses the design philosophy and architecture of our 512-channel, 4-potentiostat system before demonstrating functionality with electrochemical impedance spectroscopy data, cyclic voltammetry curves, and an example of electrochemical surface modification, all on functional implantable microelectrode arrays currently being used for in vivo electrophysiological studies. Finally, we discuss the limitations to some sensitive or high-frequency impedance measurements due to reactive parasitics.

通道数量不断增加的神经接口需要一种可扩展的测试手段。长期以来,多路复用恒电位仪一直是解决这一问题的方法,但大多数恒电位仪只适用于一种特定的探针设计或恒电位仪,可用的电化学技术有限,价格昂贵,或者支持的多路复用通道太少。我们介绍了一种自动多路复用恒电位仪系统的设计,该系统解决了这些局限性--它可轻松通用于任何探针和恒电位仪,支持恒电位仪可用的任何电化学技术,成本低廉,并可随时扩展至数百个通道,支持多个恒电位仪同时工作。本文讨论了我们的 512 通道 4 电位仪系统的设计理念和结构,然后用电化学阻抗谱数据、循环伏安曲线和电化学表面改性实例演示了该系统的功能,所有这些都是在目前用于体内电生理研究的功能性植入式微电极阵列上进行的。最后,我们讨论了反应性寄生效应对某些敏感或高频阻抗测量的限制。
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引用次数: 0
Orientation-Insensitive Multi-Antenna Reader for Wireless Biomedical Applications. 用于无线生物医学应用的方向不敏感多天线读取器。
Nilan Udayanga, Yubin Lin, Manuel Monge

This paper presents a multi-antenna external reader system that enables orientation insensitive communication with implantable medical devices (IMDs) for wireless biomedical applications. The proposed system consists of a circular array with six loop antennas. The antenna placement and orientations are determined by analyzing the near-field magnetic field variations of the loop antenna. The proposed system is first simulated using HFSS electromagnetic simulation software. Our simulations show that the received power at the proposed external reader with six antennas only varies about 5 dB for any given orientation of the implanted antenna, which is highly significant compared to the 20-35 dB variation with a single external antenna. Here, we select the antenna which provides the largest coupling between the IMD to receive/transmit signals. A prototype of the proposed multi-antenna external reader is then implemented using custom-designed PCBs that interconnect loop antennas, transceiver ICs, and commercially-available circuit components. A custom PCB with a miniaturized loop antenna is used to emulate an implantable device. Based on measurement results, the received power in the external reader only varies about 3 dB when the miniaturized antenna rotates with respect to the x-axis. These measurements show good agreement with the simulated reader.

本文提出了一种多天线外部读取器系统,该系统可实现与植入式医疗设备(imd)的方向不敏感通信,用于无线生物医学应用。该系统由六个环形天线组成的圆形阵列组成。通过分析环形天线的近场磁场变化来确定天线的位置和方向。首先利用HFSS电磁仿真软件对系统进行了仿真。我们的仿真表明,对于植入天线的任何给定方向,所提出的带有六个天线的外部读取器的接收功率仅变化约5 dB,与单个外部天线的20-35 dB变化相比,这是非常显著的。在这里,我们选择在IMD之间提供最大耦合的天线来接收/发射信号。然后使用定制设计的pcb实现了所提出的多天线外部读取器的原型,这些pcb连接环路天线、收发器ic和商用电路组件。一个定制的PCB与小型化的环路天线被用来模拟植入式设备。根据测量结果,当小型化天线相对于x轴旋转时,外部读写器的接收功率仅变化约3db。这些测量结果与模拟阅读器显示出良好的一致性。
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引用次数: 0
Multi-Access Networking with Wireless Ultrasound-Powered Implants. 无线超声植入物的多接入网络。
Ting Chia Chang, Max Wang, Amin Arbabian

Multi-access networking with miniaturized wireless implantable devices can enable and advance closed-loop medical applications to deliver precise diagnosis and treatment. Using ultrasound (US) for wireless implant systems is an advantageous approach as US can beamform with high spatial resolution to efficiently power and address multiple implants in the network. To demonstrate these capabilities, we use wirelessly powered mm-sized implants with bidirectional communication links; uplink data communication measurements are performed using time, spatial, and frequency-division multiplexing schemes in tissue phantom. A 32-channel linear transmitter array and an external receiver are used as a base station to network with two implants that are placed 6.5 cm deep and spaced less than 1 cm apart. Successful wireless powering and uplink data communication around 100 kbps with a measured bit error rate below 10-4 are demonstrated for all three networking schemes, validating the multi-access networking feasibility of US wireless implant systems.

带有微型无线植入式设备的多址网络可以实现和推进闭环医疗应用,以提供精确的诊断和治疗。在无线植入系统中使用超声是一种有利的方法,因为超声可以以高空间分辨率进行波束形成,从而有效地为网络中的多个植入物供电和寻址。为了证明这些能力,我们使用了无线供电的毫米大小的植入物,带有双向通信链路;上行数据通信测量使用时间、空间和频分复用方案在组织幻象中执行。一个32通道的线性发射器阵列和一个外部接收器被用作基站,两个植入物放置在6.5厘米深,间隔小于1厘米。在所有三种网络方案中,成功的无线供电和上行数据通信在100 kbps左右,测量误码率低于10-4,验证了美国无线植入系统多接入网络的可行性。
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引用次数: 5
Resting Tremor Detection in Parkinson's Disease with Machine Learning and Kalman Filtering. 用机器学习和卡尔曼滤波检测帕金森病患者的静息震颤。
Lin Yao, Peter Brown, Mahsa Shoaran

Adaptive deep brain stimulation (aDBS) is an emerging method to alleviate the side effects and improve the efficacy of conventional open-loop stimulation for movement disorders. However, current adaptive DBS techniques are primarily based on single-feature thresholding, precluding an optimized delivery of stimulation for precise control of motor symptoms. Here, we propose to use a machine learning approach for resting-state tremor detection from local field potentials (LFPs) recorded from subthalamic nucleus (STN) in 12 Parkinson's patients. We compare the performance of state-of-the-art classifiers and LFP-based biomarkers for tremor detection, showing that the high-frequency oscillations and Hjorth parameters achieve a high discriminative performance. In addition, using Kalman filtering in the feature space, we show that the tremor detection performance significantly improves (F(1,15)=32.16, p<0.0001). The proposed method holds great promise for efficient on-demand delivery of stimulation in Parkinson's disease.

适应性深部脑刺激(aDBS)是一种新兴的方法,可以减轻传统开环刺激对运动障碍的副作用并提高疗效。然而,当前的自适应DBS技术主要基于单特征阈值,排除了用于精确控制运动症状的刺激的优化递送。在这里,我们建议使用机器学习方法从12名帕金森病患者的丘脑底核(STN)记录的局部场电位(LFP)中检测静息状态震颤。我们比较了最先进的分类器和基于LFP的生物标记物在震颤检测中的性能,表明高频振荡和Hjorth参数具有较高的判别性能。此外,在特征空间中使用卡尔曼滤波,我们表明震颤检测性能显著提高(F(1,15)=32.16,p
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引用次数: 34
期刊
IEEE Biomedical Circuits and Systems Conference : healthcare technology : [proceedings]. IEEE Biomedical Circuits and Systems Conference
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