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A Versatile Semester-Long Course-Based Undergraduate Research Experience using Optogenetics and RNAi to Identify Genes Important for Synapse Function. 利用光遗传学和 RNAi 鉴定对突触功能重要的基因的多功能学期课程式本科生研究体验。
Eric S Luth, Peter Juo

Compared to traditional teaching laboratory activities, course-based undergraduate research experiences (CUREs) can increase student engagement and confidence, improve scientific literacy, enhance critical thinking, and promote accessibility in STEM. Here we describe a versatile CURE for an upper-level Neurobiology course that incorporates genetic, molecular, cellular, and behavioral experiments into a semester-long investigation to identify genes important for glutamate synapse formation or function in C. elegans. Following introduction to the CURE approach and basic C. elegans techniques, students construct their own low-cost optogenetics rigs, which we describe in detail here, to activate a mechanosensory escape reflex via photostimulation. They then perform a small-scale RNAi screen with this light-activated behavioral readout. Once a gene of interest is identified, students submit a proposal to investigate the role of this gene in nervous system function and spend the rest of the semester carrying out follow-up experiments using mutant strains. We also describe ways in which this CURE can be modified depending on the pedagogical objectives, availability of materials, or research interests of the instructor. Participating in this lab significantly enhanced students' abilities to see themselves as STEM professionals and prompted students to report substantial gains in skills critical for entry into and success in graduate and medical schools. In addition to the benefits CUREs provide to students, faculty benefit from the generation of preliminary data and training of students for potential independent research projects.

与传统的教学实验活动相比,以课程为基础的本科生研究体验(CURE)可以提高学生的参与度和自信心,提高科学素养,增强批判性思维,促进科学、技术和工程学的普及。在此,我们介绍了针对高年级神经生物学课程的多功能 CURE,该课程将遗传、分子、细胞和行为实验融入到为期一学期的研究中,以确定对 elegans 中谷氨酸突触的形成或功能有重要影响的基因。在介绍了 CURE 方法和 elegans 的基本技术之后,学生们构建了自己的低成本光遗传学装置,通过光刺激激活机械感觉逃逸反射。然后,他们利用这种光激活行为读数进行小规模 RNAi 筛选。一旦确定了感兴趣的基因,学生们就会提交一份研究该基因在神经系统功能中的作用的计划书,并在本学期剩余时间利用突变株开展后续实验。我们还介绍了可以根据教学目标、材料供应情况或教师的研究兴趣对 CURE 进行修改的方法。参加这个实验室大大提高了学生将自己视为 STEM 专业人员的能力,并促使学生报告说,他们在进入研究生院和医学院并取得成功的关键技能方面有了很大的提高。除了 CURE 为学生带来的益处外,教师也从初步数据的生成和学生潜在独立研究项目的培训中获益匪浅。
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引用次数: 0
Teaching Scientific Literature Analysis: A Systematic Adoption of Skill-Building Methods to Enrich Research Training for Undergraduate Students. 科学文献分析教学:系统采用技能培养方法,丰富本科生的研究训练。
Sharmila Venugopal

Teaching scientific literature analysis skills is a critical step in research training. Here I describe a 6-week skill-building module on understanding scientific literature, incorporated into a 10-week undergraduate honors research practice course in Neuroscience. Key pedagogical components include: 1) student-centered active-learning, skill-building and community-building activities; 2) persistent adoption of a proven CREATE method and a novel curate scientific summary (CSS) method for teaching scientific literature analysis skills; 3) collaborative class organization consisting of persistent learning pods (PLPs) to facilitate student-driven participation and peer learning; and, 4) role play of a real research lab. Skill development was assessed using a self-assessment survey (SAS) and longitudinal evaluation of the CREATE and CSS methods application by the PLPs to analyze primary research articles (PRAs) over four weeks. Outcomes demonstrate alleviation of pre-existing student anxiety to read complex scientific literature and advancement of critical-thinking and collaborative skills. Specifically, the SAS responses indicate that student perception about reading scientific literature transformed from being a daunting task to an enjoyable activity; this enhanced their confidence in evaluating scientific literature. PLPs fostered student engagement, peer instruction, and community building, and contributed to skill development. Weekly assessment of CREATE and CSS application highlighted marked improvements in students' abilities to analyze and critique complicated scientific material. Role playing a research lab setting with a focused research theme facilitated integrative understanding of a frontier topic in Neuroscience. The outlined innovative approach can be adopted in Course-based Undergraduate Research Experience (CURE) and should help contribute to systematizing didactic practices to train neuroscientists.

教授科学文献分析技能是研究培训的关键步骤。在此,我将介绍一个为期 6 周的科学文献理解技能培养模块,该模块被纳入为期 10 周的神经科学本科生荣誉研究实践课程中。主要教学内容包括1)以学生为中心的主动学习、技能培养和社区建设活动;2)坚持采用行之有效的 CREATE 方法和新颖的科学总结(CSS)方法教授科学文献分析技能;3)由持续学习小组(PLP)组成的协作式班级组织,以促进学生自主参与和同伴学习;4)真实研究实验室的角色扮演。通过自我评估调查(SAS)和对 CREATE 和 CSS 方法的纵向评估来评估学生的技能发展,PLPs 在四周内对原始研究文章(PRAs)进行分析。结果表明,学生在阅读复杂的科学文献时原有的焦虑情绪得到了缓解,批判性思维和协作技能得到了提高。具体而言,SAS 的反馈表明,学生对阅读科学文献的看法从艰巨的任务转变为愉快的活动;这增强了他们评价科学文献的信心。参与式学习促进了学生的参与、同伴指导和社区建设,并有助于技能的发展。对 CREATE 和 CSS 应用的每周评估表明,学生分析和评论复杂科学材料的能力明显提高。以重点研究主题为背景的研究实验室角色扮演促进了对神经科学前沿课题的综合理解。概述的创新方法可在基于课程的本科生研究体验(CURE)中采用,并应有助于系统化教学实践,以培养神经科学家。
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引用次数: 0
Primary Afferent Depolarization and the Gate Control Theory of Pain: A Tutorial Simulation. 初级传入神经去极化与疼痛门控理论:模拟教程。
Bill Heitler

The gate control theory of pain postulates that the sensation of pain can be reduced or blocked by closing a "gate" at the earliest synaptic level in the spinal cord, where nociceptive (pain) afferents excite the ascending interneurons that transmit the signal to the brain. Furthermore, the gate can be induced to close by stimulating touch afferents with receptive fields in the same general area as the trauma that is generating the pain (the "rub it to make it better" effect). A considerable volume of research has substantiated the theory and shown that a key mechanism mediating the gate is pre-synaptic inhibition, and that this inhibition is generated by depolarizing IPSPs in the nociceptor central terminals (primary afferent depolarization; PAD). Both pre-synaptic inhibition and depolarizing IPSPs are topics that students often regard as matters of secondary importance (if they are aware of them at all), and yet they are crucial to a matter of primary importance to us all - pain control. This report describes some simple computer simulations that illustrate pre-synaptic inhibition and explore the importance of the depolarizing aspect of the IPSPs. These concepts are then built into a model of the gate control of pain itself. Finally, the simulations show how a small change in chloride homeostasis can generate the dorsal root reflex, in which nociceptor afferents generate antidromic spikes which may increase neurogenic inflammation and actually exacerbate pain. The hope is that the simulations will increase awareness and understanding of a topic that is important in both basic neuroscience and medical neurology.

疼痛的 "闸门控制 "理论认为,通过关闭脊髓中最早突触水平的 "闸门",可以减轻或阻断疼痛的感觉;在脊髓中,痛觉(疼痛)传入神经兴奋上升的中间神经元,将信号传递到大脑。此外,还可以通过刺激与产生疼痛的创伤具有相同感受野的触觉传入来诱导 "闸门 "关闭("揉揉就好 "效应)。大量研究证实了这一理论,并表明介导痛觉门的关键机制是突触前抑制,而这种抑制是由痛觉感受器中枢终端的 IPSPs 去极化(初级传入去极化;PAD)产生的。突触前抑制和去极化 IPSPs 通常被学生视为次要问题(如果他们意识到的话),但它们对我们所有人的首要问题--疼痛控制--至关重要。本报告介绍了一些简单的计算机模拟,以说明突触前抑制并探讨 IPSPs 去极化方面的重要性。然后,这些概念将被构建到疼痛本身的门控模型中。最后,模拟展示了氯平衡的微小变化是如何产生背根反射的,其中痛觉感受器传入会产生反向尖峰,这可能会增加神经源性炎症,实际上会加剧疼痛。希望这些模拟能提高人们对这一在基础神经科学和医学神经学中都很重要的课题的认识和理解。
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引用次数: 0
Mapping Human Neuronal Diversity in the Search for New Therapeutics: Using Real Human Neuron Data Sets to Build Student Quantitative Skills. 绘制人类神经元多样性图谱,寻找新疗法:利用真实人类神经元数据集培养学生的定量技能。
Emma C Milligan, Kaitlyn Casimo, Laurie Buchanan, Bryant Hutson, Sabrina Robertson

Case studies are a high impact educational practice that engage students in collaborative problem solving through storytelling. HITS, an NSF funded research coordination network dedicated to exposing students to high-throughput discovery science, drove creation of this case. In this case, students imagine themselves as researchers developing new therapeutic drugs for epilepsy. Specifically, students work with the Allen Cell Types Database, which is the result of collaborative, interdisciplinary open science. Neurosurgeons partnered with the Allen institute to provide living human brain tissue for electrophysiological, morphological, and transcriptomic study. Students collaborate to collect and organize data, investigate a research question they identified, and perform fundamental statistical analyses to address their question. By leveraging the unique Cell Types dataset the case enhances student knowledge of epilepsy, illuminates high-throughput scientific approaches, and builds quantitative and research related skills. The case is also versatile and was implemented in two distinct courses. The case can also be taught in different modalities, in person or remote, with a combination of synchronous and asynchronous work. Indirect and direct measures along with quantitative and qualitative approaches were used for case assessment and improvement. Students performed well on case related exam questions, reported high confidence in their achievement of the learning outcomes, and enjoyed the case's link to neurological disease, real research data and advanced technological approaches. Our assessment findings and instructor implementation experiences are also included to facilitate the adoption or adaptation of the case for a variety of courses and/or modalities in neuroscience and STEM related curricula.

案例研究是一种极具影响力的教育实践,通过讲故事让学生参与合作解决问题。HITS 是美国国家科学基金会资助的一个研究协调网络,致力于让学生接触高通量发现科学。在这个案例中,学生们将自己想象成开发治疗癫痫新药的研究人员。具体来说,学生们使用的是艾伦细胞类型数据库,该数据库是跨学科开放科学合作的成果。神经外科医生与艾伦研究所合作,为电生理学、形态学和转录组学研究提供活体人脑组织。学生们合作收集和整理数据,调查他们确定的研究问题,并进行基本统计分析以解决他们的问题。通过利用独特的细胞类型数据集,该案例增强了学生对癫痫的了解,阐明了高通量科学方法,并培养了定量和研究相关技能。该案例还具有多功能性,可在两门不同的课程中使用。该案例还可以采用不同的教学模式,如面授或远程教学,同步和异步相结合。案例评估和改进采用了间接和直接措施,以及定量和定性方法。学生们在与案例相关的考题上表现出色,对取得学习成果信心十足,并喜欢案例与神经疾病、真实研究数据和先进技术方法之间的联系。我们的评估结果和指导教师的实施经验也包括在内,以便于在神经科学和 STEM 相关课程的各种课程和/或模式中采用或调整该案例。
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引用次数: 0
PopScience: Teaching students to Communicate Scientific Findings to the General Public. PopScience:教学生向公众传播科学发现。
Margaret J Gill

Scientific communication has become more important than ever before, yet most scientists are not trained in how to communicate their research findings to the general public. The PopScience assignment is a semester-long writing and oral communication project that focuses on how to communicate primary scientific literature to the general public. The overall goals of the PopScience project are to teach students how to: 1) critically evaluate neuroscience primary literature, and 2) translate and convey primary literature findings to a lay audience. Students completed a pre- and post- assignment perceptive assessment to evaluate the skills they obtained (e.g., reading comprehension and critical thinking), and the effectiveness of the assignment in improving these skills. Students reported that overall, the assignment improved their ability to read primary literature articles and explain them to a lay audience. Self-evaluation and professor assessments suggest the PopScience assignment also improved student's ability to integrate and summarize results from multiple sources, as well as identify and explain neuroscience terminology that often leads to confusion for lay audiences. In conclusion, this assignment teaches students how to communicate basic neuroscience to the general public, a skill that continues to be critical in successful scientific careers.

科学交流比以往任何时候都更加重要,但大多数科学家都没有接受过如何向公众交流研究成果的培训。PopScience作业是一个为期一学期的写作和口语交流项目,重点是如何向公众传播主要科学文献。PopScience 项目的总体目标是教会学生如何: 1) 批判性地评估神经科学文献:1)批判性地评估神经科学原始文献,以及 2)向非专业读者翻译和传达原始文献的研究成果。学生们完成了作业前和作业后的感知评估,以评价他们获得的技能(如阅读理解和批判性思维),以及作业在提高这些技能方面的效果。学生们表示,总体而言,这项作业提高了他们阅读主要文献文章并向非专业读者解释这些文章的能力。自我评价和教授评估表明,PopScience 作业还提高了学生整合和总结多种来源结果的能力,以及识别和解释神经科学术语的能力,而这些术语往往会让非专业读者感到困惑。总之,这项作业教会了学生如何向大众传播基本的神经科学知识,而这项技能对于成功的科学职业生涯仍然至关重要。
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引用次数: 0
Poppy Seed Consumption and Oral Fluid Opioids Detection: A Classroom Demonstration of Psychopharmacological Concepts. 罂粟籽食用与口服液阿片类药物检测:精神药理学概念的课堂演示。
Shlomit Flaisher-Grinberg

Psychopharmacological concepts such as pharmacokinetics, pharmacodynamics and drug interactions can be difficult to illustrate within the college classroom. In this demonstration, students consume poppy seed-containing food items, assess opioid content in their oral fluid using commercial drug test kits, and relate the findings to learned materials, its real-life applications, and relevant societal implications. This demonstration can clarify processes such as drug absorption, distribution, metabolism, and excretion (ADME), broaden the review of information relevant to opioids mechanisms of action, and facilitate the discussion of topics such as drug abuse, dependence, and addiction, as well as drug development, testing, policy, and enforcement. Instructors can employ different experimental designs, create dose-dependent/timeline detection plots, or allow students to construct their own experiments, assessing possible mediators of opioid detection. The demonstration can also be utilized to discuss scientific myths, truths, data misinterpretation and misrepresentation. Several optional protocols are provided, required materials are indicated, and discussion points are suggested.

药代动力学、药效学和药物相互作用等精神药理学概念很难在大学课堂上进行说明。在本演示中,学生食用含有罂粟籽的食品,使用商业药物检测试剂盒评估口腔液中阿片类药物的含量,并将研究结果与所学材料、其在现实生活中的应用以及相关的社会影响联系起来。这种演示可以阐明药物的吸收、分布、代谢和排泄(ADME)等过程,扩大对阿片类药物作用机制相关信息的回顾,促进对药物滥用、依赖和成瘾以及药物开发、测试、政策和执法等主题的讨论。教师可以采用不同的实验设计,创建剂量依赖性/时间线检测图,或让学生自己构建实验,评估阿片类药物检测的可能介质。该演示还可用于讨论科学神话、真相、数据误读和错误陈述。本演示提供了几个可选方案,标明了所需材料,并提出了讨论要点。
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引用次数: 0
Using Drosophila Two-Choice Assay to Study Optogenetics in Hands-On Neurobiology Laboratory Activities. 在动手神经生物学实验室活动中使用果蝇双选法研究光遗传学。
Zhuo Fu, Ainul Huda, Ian F Kimbrough, Lina Ni

Optogenetics has made a significant impact on neuroscience, allowing activation and inhibition of neural activity with exquisite spatiotemporal precision in response to light. In this lab session, we use fruit flies to help students understand the fundamentals of optogenetics through hands-on activities. The CsChrimson channelrhodopsin, a light-activated cation channel, is expressed in sweet and bitter sensory neurons. Sweet sensory neurons guide animals to identify nutrient-rich food and drive appetitive behaviors, while bitter sensory neurons direct animals to avoid potentially toxic substances and guide aversive behavior. Students use two-choice assays to explore the causality between the stimulation activation of these neurons and the appetitive and avoidance behaviors of the fruit flies. To quantify their observations, students calculate preference indices and use the Student's t-test to analyze their data. After this lab session, students are expected to have a basic understanding of optogenetics, fly genetics, sensory perception, and how these relate to sensory-guided behaviors. They will also learn to conduct, quantify, and analyze two-choice behavioral assays.

光遗传学对神经科学产生了重大影响,它可以在光的作用下,以精妙的时空精度激活和抑制神经活动。在这节实验课中,我们利用果蝇,通过实践活动帮助学生了解光遗传学的基本原理。CsChrimson 通道闪烁蛋白是一种光激活阳离子通道,在甜味和苦味感觉神经元中均有表达。甜味感觉神经元引导动物识别营养丰富的食物并驱动食欲行为,而苦味感觉神经元则引导动物避开潜在的有毒物质并引导厌恶行为。学生们利用双项选择实验来探索这些神经元的刺激激活与果蝇的食欲和回避行为之间的因果关系。为了量化观察结果,学生会计算偏好指数,并使用学生 t 检验分析数据。完成本实验课后,学生将对光遗传学、果蝇遗传学、感官知觉以及它们与感官引导行为的关系有基本的了解。他们还将学会进行、量化和分析双选行为实验。
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引用次数: 0
Unlocking Hidden Awareness: Repurposing fMRI to Detect Levels of Consciousness. 解开隐藏的意识:重新利用 fMRI 检测意识水平。
Alessia Caccamo, Gwyn Nolde, Halle Bakir, Lauren Ho, Marta C Alonso-Moreno, Sadali Wanniarachchi

Determining the state of consciousness in patients with disorders of consciousness is a challenging task because for someone to be deemed conscious, both wakefulness and awareness are required. Awareness has traditionally been assessed by examining physical responsiveness but in 2010, Monti et al. explored how using fMRI to measure brain activity in humans could help reclassify the state of consciousness in these patients. The findings, published in The New England Journal of Medicine, show that some brain regions are active when patients respond to an imagery or communication task. This is a seminal study because it demonstrates that patients who behaviourally appear to be in a vegetative or minimally conscious state may still have residual brain functions that would not be apparent from a clinical examination alone. Notably, it exemplified how fMRI can be repurposed as a communication tool for this subset of aware, but 'locked in', patients who appear unresponsive. From an educator's perspective, this paper is valuable because it is relevant to a broad audience, both introductory and advanced level undergraduate students. It introduces key concepts in cognitive and clinical neuroscience and encourages students to consider the connections between social issues and technology development in neuroscience. Finally, educators may use this paper to discuss and debate the nature of consciousness and the ethical implications that the use of fMRI for determining consciousness may have on medical ethics.

确定意识障碍患者的意识状态是一项具有挑战性的任务,因为一个人要被视为有意识,必须同时具备清醒和意识。意识传统上是通过检查身体反应来评估的,但在 2010 年,蒙蒂等人探索了使用 fMRI 测量人的大脑活动如何帮助重新划分这些患者的意识状态。发表在《新英格兰医学杂志》(The New England Journal of Medicine)上的研究结果表明,当患者对想象或交流任务做出反应时,某些大脑区域会活跃起来。这是一项具有开创性的研究,因为它表明,在行为上看似处于植物人或意识微弱状态的病人可能仍有残余的大脑功能,而这些功能仅从临床检查中是看不出来的。值得注意的是,该研究证明了如何将 fMRI 重新用作一种交流工具,以帮助这部分意识清醒但 "被禁锢"、似乎没有反应的患者。从教育者的角度来看,这篇论文很有价值,因为它与广大受众(包括入门级和高级本科生)息息相关。它介绍了认知和临床神经科学的关键概念,并鼓励学生思考社会问题与神经科学技术发展之间的联系。最后,教育工作者可以利用本文讨论和辩论意识的本质以及使用 fMRI 确定意识可能对医学伦理产生的影响。
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引用次数: 0
Teaching Synaptic Transmission Using Primary Literature: A Skills-Focused Pedagogical Approach. 利用原始文献教授突触传递:以技能为重点的教学方法。
Andrew J Payne, Kyle B Bills, Scott C Steffensen

Neuroscience is a burgeoning and intensive undergraduate major at many institutions of higher education and several areas in neuroscience education need further development. One such needed development is an increased focus on the procurement of career-relevant skills in addition to the traditional acquisition of subject knowledge. Skill development is particularly challenging in neuroscience education as the subject's interdisciplinary nature provides an atypically broad range of potential careers for graduates. Skills common to many careers in neuroscience include the ability to understand and analyze quantitative data and to draw conclusions based on those analyses. Here is presented an active learning pedagogical approach involving the analysis of seminal articles in the primary scientific literature to provide practice in analyzing data and drawing conclusions from those data while at the same time learning the fundamental tenets of synaptic transmission. Articles were selected that highlight principles such as the role of Ca2+ in synaptic release, exocytosis, quantal release, and synaptic delay. Figures from these articles that can readily be used to teach these principles were selected, and questions that can help to guide students' analysis of the data are also suggested. Activities like this are needed in greater numbers to facilitate the process of helping students gain skills relevant to a productive career in neuroscience.

神经科学在许多高等教育机构都是一个新兴和密集的本科专业,神经科学教育的几个领域需要进一步发展。其中一个需要发展的领域是,除了传统的学科知识学习之外,要更加注重学习与职业相关的技能。在神经科学教育中,技能培养尤其具有挑战性,因为该学科的跨学科性质为毕业生提供了非常广泛的潜在职业。神经科学领域许多职业的共同技能包括理解和分析定量数据以及根据这些分析得出结论的能力。这里介绍一种主动学习的教学方法,包括分析主要科学文献中的重要文章,以提供分析数据和从这些数据中得出结论的练习,同时学习突触传递的基本原理。我们选择的文章突出了 Ca2+ 在突触释放、外吞、量子释放和突触延迟中的作用等原理。我们还从这些文章中选择了可用于教授这些原理的图表,并提出了有助于指导学生分析数据的问题。我们需要开展更多类似的活动,以帮助学生获得在神经科学领域有所作为的技能。
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引用次数: 0
Early-Career Pedagogical Practice: The Value of Training Undergraduates to Teach. 早期教育实践:培训本科生从事教学工作的价值。
Chandler E G Carr, Kira Bailey

Pedagogical experiences prior to a career in higher education are limited, particularly for interested undergraduates. We detail here the experience of an undergraduate mentored in pedagogical techniques such as topic and reading selection, assessment creation and grading, and classroom management. Their pedagogical training included co-instructing a course with their mentor. The mentee found the experience to be rewarding, learning the areas in which they excelled and struggled. For the mentor, this was a valuable opportunity to reflect on their own pedagogical choices and techniques. The process provided a new perspective for each of us as we viewed the course through the lens of the other person. More opportunities for undergraduates to undertake similar roles may strengthen teaching in higher education and grant early career experiences to interested individuals. Though rewarding, course construction and implementation is time-consuming and difficult. Balancing time and effort beyond the class is a required skill, and frequent communication between the mentee and mentor is necessary.

从事高等教育之前的教学经验非常有限,尤其是对感兴趣的本科生而言。我们在此详细介绍一名本科生在教学技巧方面的指导经验,如选题和阅读、评估创建和评分以及课堂管理。他们的教学培训包括与导师共同指导一门课程。被指导者认为这段经历很有意义,他们了解到了自己擅长和不擅长的领域。对导师来说,这是一个反思自己的教学选择和技巧的宝贵机会。这个过程为我们每个人提供了一个新的视角,因为我们是通过对方的视角来看待课程的。为本科生提供更多担任类似角色的机会,可以加强高等教育的教学工作,并为感兴趣的人提供早期职业经验。尽管收获颇丰,但课程建设和实施耗时且困难重重。平衡课外时间和精力是一项必备技能,被指导者和指导者之间必须经常沟通。
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引用次数: 0
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Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience
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