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Associations of Polygenic Risk for Depression, Traditional Chinese Medicine Constitution, and Depression: A Population-Based Study in Taiwan 抑郁症多基因风险、中医体质与抑郁症的关联:基于台湾人口的研究
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-09-10 DOI: 10.1002/ajmg.b.33007
Yu-Cheng Hsu, Mei-Hsin Su, Chia-Yen Chen, Yen-Feng Lin, Shi-Heng Wang

To comprehensively investigate the risk factors associated with depression, traditional Chinese medicine constitution (TCMC) has been found to be related to depression. However, the underlying mechanism remains unclear. This study examined the association between the concept of unbalanced TCMCs and major depressive disorder (MDD), investigated the overlapping polygenic risks between unbalanced TCMC and MDD, and performed a mediation test to establish potential pathways. In total, 11,030 individuals were recruited from the Taiwan Biobank, and the polygenic risk score (PRS) for MDD for each participant was calculated using the data from the Psychiatric Genomics Consortium. Unbalanced TCMC were classified as yang-deficiency, yin-deficiency, and stasis. The MDD PRS was associated with yang-deficiency odds ratio [OR] per standard deviation increase in standardized (PRS = 1.07, p = 0.0080), yin-deficiency (OR = 1.07, p = 0.0030), and stasis constitution (OR = 1.06, p = 0.0331). Yang-deficiency (OR = 2.07, p < 0.0001) and stasis constitutions (OR = 1.65, p = 0.0015) were associated with an increased risk of MDD. A higher number of unbalanced constitutions was associated with MDD (p < 0.0001). The effect of MDD PRS on MDD was partly mediated by yang-deficiency (10.21%) and stasis (8.41%) constitutions. This study provides evidence for the shared polygenic risk mechanism underlying depression and TCMC and the potential mediating role of TCMC in the polygenic liability for MDD.

为了全面研究与抑郁症相关的风险因素,研究发现传统中医体质(TCMC)与抑郁症有关。然而,其潜在机制仍不清楚。本研究探讨了中医体质不平衡概念与重度抑郁症(MDD)之间的关联,研究了中医体质不平衡与重度抑郁症之间重叠的多基因风险,并进行了中介检验以建立潜在的通路。研究人员从台湾生物样本库中共招募了11,030人,并利用精神疾病基因组学联盟的数据计算了每位参与者的MDD多基因风险评分(PRS)。不平衡的中医药基因组被分为阳虚、阴虚和瘀滞。MDD PRS 与阳虚体质的几率比 [OR] 标准差每增加一个标准差(PRS = 1.07,P = 0.0080)、阴虚体质(OR = 1.07,P = 0.0030)和瘀滞体质(OR = 1.06,P = 0.0331)相关。阳虚体质(OR = 2.07,p = 0.0001)和瘀滞体质(OR = 1.65,p = 0.0015)与 MDD 风险增加有关。更多的不平衡体质与 MDD 相关(p < 0.0001)。阳虚体质(10.21%)和瘀滞体质(8.41%)在一定程度上介导了 MDD PRS 对 MDD 的影响。这项研究为抑郁症和中医体质共同的多基因风险机制以及中医体质在 MDD 多基因责任中的潜在中介作用提供了证据。
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引用次数: 0
The genetic and environmental etiology of novel frequency-driven regional parcellations of abnormal white matter 新频率驱动的区域性异常白质小片的遗传和环境病因。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-08-16 DOI: 10.1002/ajmg.b.33004
Shu-Ju Lin, Nathan A. Gillespie, Randy Notestine, Anthony C. Gamst, Anna M. Chen, Linda K. McEvoy, Matthew S. Panizzon, Jeremy A. Elman, Stephen J. Glatt, Donald J. Hagler Jr, Michael C. Neale, Carol E. Franz, William S. Kremen, Christine Fennema-Notestine

The prevalence of white matter disease increases with age and is associated with cerebrovascular disease, cognitive decline, and risk for dementia. MRI measures of abnormal signal in the white matter (AWM) provide estimates of damage, however, regional patterns of AWM may be differentially influenced by genetic or environmental factors. With our data-driven regional parcellation approach, we created a probability distribution atlas using Vietnam Era Twin Study of Aging (VETSA) data (n = 475, mean age 67.6 years) and applied a watershed algorithm to define separate regional parcellations. We report biometrical twin modeling for five anatomically distinct regions: (1) Posterior, (2) Superior frontal and parietal, (3) Anterior and inferior frontal with deep areas, (4) Occipital, and (5) Anterior periventricular. We tested competing multivariate hypotheses to identify unique influences and to explain sources of covariance among the parcellations. Family aggregation could be entirely explained by additive genetic influences, with additive genetic variance (heritability) ranging from 0.69 to 0.79. Most genetic correlations between parcellations ranged from moderate to high (rg = 0.57–0.85), although two were small (rg = 0.35–0.39), consistent with varying degrees of unique genetic influences. This proof-of-principle investigation demonstrated the value of our novel, data-driven parcellations, with identifiable genetic and environmental differences, for future exploration.

白质疾病的发病率随着年龄的增长而增加,并与脑血管疾病、认知能力下降和痴呆症风险有关。磁共振成像测量白质中的异常信号(AWM)可估算出损伤程度,但AWM的区域模式可能会受到遗传或环境因素的不同影响。通过数据驱动的区域划分方法,我们利用越南老龄化双胞胎研究(VETSA)数据(n = 475,平均年龄 67.6 岁)创建了概率分布图谱,并应用分水岭算法定义了独立的区域划分。我们报告了五个解剖学上不同区域的生物计量双胞胎模型:(1)后部,(2)额叶上部和顶叶,(3)额叶前部和下部及深部,(4)枕叶,以及(5)前脑室周围。我们测试了相互竞争的多元假设,以确定独特的影响因素,并解释各区系之间的协方差来源。家族聚集性完全可以用加性遗传影响来解释,加性遗传变异(遗传率)在 0.69 至 0.79 之间。大多数旁系之间的遗传相关性介于中度到高度之间(rg = 0.57-0.85),但有两个旁系之间的遗传相关性较小(rg = 0.35-0.39),这与不同程度的独特遗传影响是一致的。这项原理验证调查证明了我们新颖的、数据驱动的、具有可识别的遗传和环境差异的旁系结构在未来探索中的价值。
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引用次数: 0
A twin analysis to estimate genetic and environmental factors contributing to variation in weighted gene co-expression network module eigengenes 通过孪生子分析估算导致加权基因共表达网络模块eigengenes变异的遗传和环境因素。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-08-09 DOI: 10.1002/ajmg.b.33003
Nathan A. Gillespie, Tyler R. Bell, Gentry C. Hearn, Jonathan L. Hess, Ming T. Tsuang, Michael J. Lyons, Carol E. Franz, William S. Kremen, Stephen J. Glatt

Multivariate network-based analytic methods such as weighted gene co-expression network analysis are frequently applied to human and animal gene-expression data to estimate the first principal component of a module, or module eigengene (ME). MEs are interpreted as multivariate summaries of correlated gene-expression patterns and network connectivity across genes within a module. As such, they have the potential to elucidate the mechanisms by which molecular genomic variation contributes to individual differences in complex traits. Although increasingly used to test for associations between modules and complex traits, the genetic and environmental etiology of MEs has not been empirically established. It is unclear if, and to what degree, individual differences in blood-derived MEs reflect random variation versus familial aggregation arising from heritable or shared environmental influences. We used biometrical genetic analyses to estimate the contribution of genetic and environmental influences on MEs derived from blood lymphocytes collected on a sample of N = 661 older male twins from the Vietnam Era Twin Study of Aging (VETSA) whose mean age at assessment was 67.7 years (SD = 2.6 years, range = 62–74 years). Of the 26 detected MEs, 14 (56%) had statistically significant additive genetic variation with an average heritability of 44% (SD = 0.08, range = 35%–64%). Despite the relatively small sample size, this demonstration of significant family aggregation including estimates of heritability in 14 of the 26 MEs suggests that blood-based MEs are reliable and merit further exploration in terms of their associations with complex traits and diseases.

基于多变量网络的分析方法(如加权基因共表达网络分析)经常被应用于人类和动物的基因表达数据,以估算模块的第一主成分或模块基因(ME)。模块主成分被解释为模块内各基因相关基因表达模式和网络连通性的多变量总结。因此,它们有可能阐明分子基因组变异导致复杂性状个体差异的机制。虽然越来越多的研究用于检验模块与复杂性状之间的关联,但MEs的遗传和环境病因尚未得到经验性的证实。目前还不清楚血源性 ME 的个体差异是反映随机变异,还是反映遗传或共同环境影响下的家族聚集,以及反映的程度如何。我们使用生物计量遗传分析来估算遗传和环境对血液淋巴细胞中 MEs 的影响,这些血液淋巴细胞来自越南老龄化双胞胎研究(VETSA)的 N = 661 个老年男性双胞胎样本,评估时的平均年龄为 67.7 岁(SD = 2.6 岁,范围 = 62-74 岁)。在检测到的26个ME中,14个(56%)具有统计学意义上显著的加性遗传变异,平均遗传率为44%(SD=0.08,范围=35%-64%)。尽管样本量相对较小,但26个ME中的14个具有明显的家族聚集性,包括估计的遗传率,这表明基于血液的ME是可靠的,值得进一步探讨它们与复杂性状和疾病的关联。
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引用次数: 0
Exploring the genetic architecture of brain structure and ADHD using polygenic neuroimaging-derived scores 利用多基因神经成像衍生评分探索大脑结构和多动症的遗传结构。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-07-17 DOI: 10.1002/ajmg.b.32987
Tim van der Es, Sourena Soheili-Nezhad, Nina Roth Mota, Barbara Franke, Jan Buitelaar, Emma Sprooten

Genome-wide association studies (GWAS) have provided valuable insights into the genetic basis of neuropsychiatric disorders and highlighted their complexity. Careful consideration of the polygenicity and complex genetic architecture could aid in the understanding of the underlying brain mechanisms. We introduce an innovative approach to polygenic scoring, utilizing imaging-derived phenotypes (IDPs) to predict a clinical phenotype. We leveraged IDP GWAS data from the UK Biobank, to create polygenic imaging-derived scores (PIDSs). As a proof-of-concept, we assessed genetic variations in brain structure between individuals with ADHD and unaffected controls across three NeuroIMAGE waves (n = 954). Out of the 94 PIDS, 72 exhibited significant associations with their corresponding IDPs in an independent sample. Notably, several global measures, including cerebellum white matter, cerebellum cortex, and cerebral white matter, displayed substantial variance explained for their respective IDPs, ranging from 3% to 5.7%. Conversely, the associations between each IDP and the clinical ADHD phenotype were relatively weak. These findings highlight the growing power of GWAS in structural neuroimaging traits, enabling the construction of polygenic scores that accurately reflect the underlying polygenic architecture. However, to establish robust connections between PIDS and behavioral or clinical traits such as ADHD, larger samples are needed. Our novel approach to polygenic risk scoring offers a valuable tool for researchers in the field of psychiatric genetics.

全基因组关联研究(GWAS)为了解神经精神疾病的遗传基础提供了宝贵的见解,并凸显了其复杂性。仔细考虑多基因性和复杂的遗传结构有助于了解潜在的大脑机制。我们引入了一种创新的多基因评分方法,利用成像衍生表型(IDP)来预测临床表型。我们利用英国生物库中的 IDP GWAS 数据创建了多基因成像衍生评分(PIDS)。作为概念验证,我们评估了多动症患者与未受影响的对照组之间大脑结构的遗传变异,共涉及三次神经影像图像波(n = 954)。在 94 个 PIDS 中,有 72 个与独立样本中相应的 IDPs 有显著关联。值得注意的是,包括小脑白质、小脑皮质和大脑白质在内的几种全局性测量指标显示出其各自的 IDPs 有很大的方差解释率,从 3% 到 5.7% 不等。相反,每个 IDP 与临床多动症表型之间的关联相对较弱。这些发现凸显了全球基因组学分析在结构性神经影像特征方面日益强大的作用,它可以构建多基因评分,准确反映潜在的多基因结构。然而,要在 PIDS 与行为或临床特征(如多动症)之间建立稳固的联系,还需要更大的样本。我们的多基因风险评分新方法为精神遗传学领域的研究人员提供了一种宝贵的工具。
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引用次数: 0
Independent inheritance of cognition and bipolar disorder in a family sample 家族样本中认知和躁郁症的独立遗传。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-07-16 DOI: 10.1002/ajmg.b.33001
Alexander D'Amico, Heejong Sung, Alejandro Arbona-Lampaya, Ally Freifeld, Katie Hosey, Joshua Garcia, Ley Lacbawan, Emily Besançon, Layla Kassem, Nirmala Akula, Emma E. M. Knowles, Dwight Dickinson, Francis J. McMahon

Cognitive deficits in people with bipolar disorder (BD) may be the result of the illness or its treatment, but they could also reflect genetic risk factors shared between BD and cognition. We investigated this question using empirical genetic relationships within a sample of patients with BD and their unaffected relatives. Participants with bipolar I, II, or schizoaffective disorder (“narrow” BD, n = 69), related mood disorders (“broad” BD, n = 135), and their clinically unaffected relatives (n = 227) completed five cognitive tests. General cognitive function (g) was quantified via principal components analysis (PCA). Heritability and genetic correlations were estimated with SOLAR-Eclipse. Participants with “narrow” or “broad” diagnoses showed deficits in g, although affect recognition was unimpaired. Cognitive performance was significantly heritable (h2 = 0.322 for g, p < 0.005). Coheritability between psychopathology and g was small (0.0184 for narrow and 0.0327 for broad) and healthy relatives of those with BD were cognitively unimpaired. In this family sample, cognitive deficits were present in participants with BD but were not explained by substantial overlaps in genetic determinants of mood and cognition. These findings support the view that cognitive deficits in BD are largely the result of the illness or its treatment.

双相情感障碍(BD)患者的认知缺陷可能是疾病或其治疗的结果,但也可能反映了双相情感障碍和认知之间共有的遗传风险因素。我们利用双相情感障碍患者及其未受影响亲属样本中的经验遗传关系研究了这一问题。患有双相情感障碍 I、II 或分裂情感障碍("狭义 "BD,n = 69)、相关情绪障碍("广义 "BD,n = 135)的参与者及其临床上未受影响的亲属(n = 227)完成了五项认知测试。一般认知功能(g)通过主成分分析(PCA)进行量化。利用 SOLAR-Eclipse 对遗传率和遗传相关性进行了估计。诊断为 "狭义 "或 "广义 "的受试者在 g 方面表现出缺陷,但情感识别能力未受影响。认知表现具有明显的遗传性(g=0.322,p
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引用次数: 0
Polygene by environment interactions predicting depressive outcomes 多基因与环境的相互作用可预测抑郁的结果。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-07-16 DOI: 10.1002/ajmg.b.33000
Alessandra R. Grillo

Depression is a major public health problem with a continued need to uncover its etiology. Current models of depression contend that gene-by-environment (G × E) interactions influence depression risk, and further, that depression is polygenic. Thus, recent models have emphasized two polygenic approaches: a hypothesis-driven multilocus genetic profile score (MGPS; “MGPS × E”) and a polygenic risk score (PRS; “PRS × E”) derived from genome-wide association studies (GWAS). This review for the first time synthesizes current knowledge on polygene by environment “P × E” interaction research predicting primarily depression-related outcomes, and in brief, neurobiological outcomes. The “environment” of focus in this project is stressful life events. It further discusses findings in the context of differential susceptibility and diathesis-stress theories—two major theories guiding G × E work. This synthesis indicates that, within the MGPS literature, polygenic scores based on the serotonin system, the HPA axis, or across multiple systems, interact with environmental stress exposure to predict outcomes at multiple levels of analyses and most consistently align with differential susceptibility theory. Depressive outcomes are the most studied, but neuroendocrine, and neuroimaging findings are observed as well. By contrast, vast methodological differences between GWAS-based PRS studies contribute to mixed findings that yield inconclusive results.

抑郁症是一个重大的公共健康问题,需要不断揭示其病因。目前的抑郁症模型认为,基因与环境(G × E)之间的相互作用会影响抑郁症风险,而且抑郁症是多基因遗传的。因此,最近的模型强调了两种多基因方法:一种是由假设驱动的多焦点遗传特征评分(MGPS;"MGPS × E"),另一种是由全基因组关联研究(GWAS)得出的多基因风险评分(PRS;"PRS × E")。本综述首次综述了目前关于多基因与环境 "P × E "相互作用研究的知识,该研究主要预测与抑郁症相关的结果,简而言之,预测神经生物学结果。本项目关注的 "环境 "是生活压力事件。它进一步讨论了在差异易感性和病因-压力理论(指导 G × E 工作的两个主要理论)背景下的研究结果。本综述表明,在 MGPS 文献中,基于血清素系统、HPA 轴或跨多个系统的多基因评分与环境压力暴露相互作用,在多个分析层次上预测结果,并且与差异易感性理论最为一致。对抑郁结果的研究最多,但也观察到神经内分泌和神经影像学的研究结果。相比之下,基于 GWAS 的 PRS 研究在方法上存在巨大差异,导致研究结果参差不齐,无法得出结论。
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引用次数: 0
Meet the Editors. An interview with Marta Ribasés, Vall d'Hebron Research Institute (VHIR), Barcelona Spain 与编辑见面。采访西班牙巴塞罗那 Vall d'Hebron 研究所(VHIR)的 Marta Ribasés。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-07-05 DOI: 10.1002/ajmg.b.33002
Paul Trevorrow, Marta Ribasés
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引用次数: 0
Autistic traits in youth with familial adenomatous polyposis: A Dutch–Canadian case–control study 家族性腺瘤性息肉病青少年的自闭症特征:一项荷兰-加拿大病例对照研究。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-07-05 DOI: 10.1002/ajmg.b.32999
Polina Perlman Danieli, Ny Hoang, Thanuja Selvanayagam, Alvin Yang, Elemi Breetvelt, Merit Tabbers, Christine Cohen, Arthur S. Aelvoet, Brett Trost, Thomas Ward, Kara Semotiuk, Carol Durno, Melyssa Aronson, Zane Cohen, Evelien Dekker, Jacob Vorstman

This study investigated the neurodevelopmental impact of pathogenic adenomatous polyposis coli (APC) gene variants in patients with familial adenomatous polyposis (FAP), a cancer predisposition syndrome. We hypothesized that certain pathogenic APC variants result in behavioral–cognitive challenges. We compared 66 FAP patients (cases) and 34 unaffected siblings (controls) to explore associations between APC variants and behavioral and cognitive challenges. Our findings indicate that FAP patients exhibited higher Social Responsiveness Scale (SRS) scores, suggesting a greater prevalence of autistic traits when compared to unaffected siblings (mean 53.8 vs. 47.4, Wilcoxon p = 0.018). The distribution of SRS scores in cases suggested a bimodal pattern, potentially linked to the location of the APC variant, with scores increasing from the 5′ to 3′ end of the gene (Pearson's r = 0.33, p = 0.022). While we observed a trend toward lower educational attainment in cases, this difference was not statistically significant. This study is the first to explore the connection between APC variant location and neurodevelopmental traits in FAP, expanding our understanding of the genotype–phenotype correlation. Our results emphasize the importance of clinical assessment for autistic traits in FAP patients, shedding light on the potential role of APC gene variants in these behavioral and cognitive challenges.

本研究调查了致病性腺瘤性息肉病大肠杆菌(APC)基因变异对家族性腺瘤性息肉病(FAP)(一种癌症易感综合征)患者神经发育的影响。我们假设某些致病性 APC 变异会导致行为认知方面的挑战。我们比较了 66 名 FAP 患者(病例)和 34 名未受影响的兄弟姐妹(对照组),以探讨 APC 变异与行为和认知挑战之间的关联。我们的研究结果表明,与未受影响的兄弟姐妹相比,FAP 患者的社会反应量表(SRS)得分更高,表明自闭症特征的发生率更高(平均值为 53.8 vs. 47.4,Wilcoxon p = 0.018)。病例中 SRS 分数的分布呈现双峰模式,这可能与 APC 变异的位置有关,分数从基因的 5' 端向 3' 端递增(Pearson's r = 0.33,p = 0.022)。虽然我们观察到病例的教育程度有降低的趋势,但这种差异在统计学上并不显著。这项研究首次探讨了 APC 变异位置与 FAP 神经发育特征之间的联系,拓展了我们对基因型与表型相关性的理解。我们的研究结果强调了对 FAP 患者自闭症特征进行临床评估的重要性,并揭示了 APC 基因变异在这些行为和认知挑战中的潜在作用。
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引用次数: 0
Network-based artificial intelligence approaches for advancing personalized psychiatry 基于网络的人工智能方法促进个性化精神病学的发展
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-06-21 DOI: 10.1002/ajmg.b.32997
Sivanesan Rajan, Emanuel Schwarz

Psychiatric disorders have a complex biological underpinning likely involving an interplay of genetic and environmental risk contributions. Substantial efforts are being made to use artificial intelligence approaches to integrate features within and across data types to increase our etiological understanding and advance personalized psychiatry. Network science offers a conceptual framework for exploring the often complex relationships across different levels of biological organization, from cellular mechanistic to brain-functional and phenotypic networks. Utilizing such network information effectively as part of artificial intelligence approaches is a promising route toward a more in-depth understanding of illness biology, the deciphering of patient heterogeneity, and the identification of signatures that may be sufficiently predictive to be clinically useful. Here, we present examples of how network information has been used as part of artificial intelligence within psychiatry and beyond and outline future perspectives on how personalized psychiatry approaches may profit from a closer integration of psychiatric research, artificial intelligence development, and network science.

精神病具有复杂的生物学基础,可能涉及遗传和环境风险的相互作用。目前,人们正大力使用人工智能方法来整合数据类型内和数据类型间的特征,以加深我们对病因学的理解,推动个性化精神病学的发展。网络科学提供了一个概念框架,用于探索从细胞机理到大脑功能和表型网络等不同层次的生物组织之间往往十分复杂的关系。作为人工智能方法的一部分,有效利用此类网络信息是一条大有可为的途径,有助于更深入地了解疾病的生物学特性、解读患者的异质性,以及识别足以预测临床症状的特征。在此,我们将举例说明如何将网络信息用作精神病学内外人工智能的一部分,并概述个性化精神病学方法如何从精神病学研究、人工智能开发和网络科学的更紧密结合中获益的未来前景。
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引用次数: 0
Interview with Stephen Glatt. Editor-in-Chief, American Journal of Medical Genetics: Neuropsychiatric Genetics 采访斯蒂芬-格拉特(Stephen Glatt)。美国医学遗传学杂志》主编:神经精神遗传学
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-06-21 DOI: 10.1002/ajmg.b.32998
Paul Trevorrow, Stephen J. Glatt
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引用次数: 0
期刊
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
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