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Genetic Variants ε2 and ε4 of APOE Predict Mortality and Poor Outcome Independently in Spontaneous Intracerebral Hemorrhage Within the Chinese Han Population APOE的遗传变异ε2和ε4可独立预测中国汉族人群自发性脑内出血的死亡率和不良预后。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-10-06 DOI: 10.1002/ajmg.b.33010
Chuyue Wu, Qinji Zhou, Yu Huang, Fei Yan, Zhenjie Yang, Lei He, Qian Li, Li Li

The heightened mortality and disability rates, coupled with restricted neurological recovery post intracerebral hemorrhage (ICH), have sparked considerable attention toward its treatment and results. Simultaneously, the influence of the APOE gene on ICH prognosis has been well-documented. This research aimed to explore the relationship between specific APOE alleles in the present cohort and the incidences of mortality, recurrence, and adverse prognosis, as determined by neurological function assessments in ICH patients. Data on patients diagnosed with ICH and hospitalized in the Department of Neurology at our institution from October 2021 to March 2022 were collected, including determining their APOE genotypes. A 1-year follow-up was conducted to evaluate mortality, ICH recurrence, and modified Rankin Scale (mRS) scores at 3 and 12 months. Poor prognosis was defined as an mRS score of ≥ 3. Initially, we analyzed the relationships between different APOE alleles and mortality, recurrence, and poor prognosis. Subsequently, we explored additional factors influencing each prognostic outcome and conducted multivariate analysis to identify independent risk factors. An analysis was conducted on 289 patients diagnosed with ICH. The presence of the ε2 allele was found to be a significant independent predictor for unfavorable outcomes at both 3 months (p = 0.022, OR = 2.138, 95% CI [2.041, 3.470]) and 1 year (p = 0.020, OR = 5.116, 95% CI [5.044, 5.307]). Moreover, the ε4 allele was established as an independent risk factor for ICH recurrence within 1 year (p = 0.025, OR = 2.326, 95% CI [1.163, 2.652]), as well as for mortality at 3 months (p = 0.037, OR = 4.250, 95% CI [4.068, 4.920]) and 1 year (p = 0.023, OR = 4.109, 95% CI [4.016, 4.739]). In conclusions, Both APOE ε2 and ε4 variants independently heighten mortality risk, recurrence, and poor prognosis after ICH. The substantial influence underscores the need for additional investigation into the impact of APOE genotype on ICH prognosis.

脑内出血(ICH)后死亡率和致残率升高,加上神经功能恢复受限,引发了人们对其治疗和结果的极大关注。与此同时,APOE 基因对 ICH 预后的影响也已得到充分证实。本研究旨在探讨本研究队列中特定 APOE 等位基因与 ICH 患者死亡率、复发率和不良预后发生率之间的关系,并通过神经功能评估加以确定。我们收集了 2021 年 10 月至 2022 年 3 月期间本院神经内科确诊为 ICH 并住院的患者数据,包括确定他们的 APOE 基因型。随访1年,评估死亡率、ICH复发情况以及3个月和12个月时的改良Rankin量表(mRS)评分。预后不良的定义是 mRS 评分≥ 3。我们首先分析了不同 APOE 等位基因与死亡率、复发和预后不良之间的关系。随后,我们探讨了影响每种预后结果的其他因素,并进行了多变量分析,以确定独立的风险因素。我们对 289 例确诊为 ICH 的患者进行了分析。结果发现,ε2 等位基因的存在是 3 个月(p = 0.022,OR = 2.138,95% CI [2.041,3.470])和 1 年(p = 0.020,OR = 5.116,95% CI [5.044,5.307])不利预后的重要独立预测因素。此外,ε4 等位基因被确定为 1 年内 ICH 复发(p = 0.025,OR = 2.326,95% CI [1.163,2.652])以及 3 个月内死亡率(p = 0.037,OR = 4.250,95% CI [4.068,4.920])和 1 年内死亡率(p = 0.023,OR = 4.109,95% CI [4.016,4.739])的独立危险因素。总之,APOE ε2和ε4变异均可独立增加ICH后的死亡风险、复发和不良预后。这种重大影响突出表明,有必要进一步研究 APOE 基因型对 ICH 预后的影响。
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引用次数: 0
Causal Relationship Between Autism Spectrum Disorder and Inflammatory Bowel Disease: A Bidirectional Mendelian Randomization Study 自闭症谱系障碍与炎症性肠病之间的因果关系:双向孟德尔随机化研究
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-10-01 DOI: 10.1002/ajmg.b.33012
Weilin Li, Xiaoyu He, Chao Tan, Tao Zhang

Patients with autism spectrum disorder (ASD) are often accompanied by inflammatory bowel disease (IBD) in observational research; however, the potential causal link between the two conditions remains unknown. In this study, we used a two-sample bidirectional Mendelian randomization (MR) approach to assess the causal relationship between ASD and IBD and its main subtypes, Crohn's disease (CD), and ulcerative colitis (UC). Independent genetic instruments from a genome-wide association study (GWAS) for IBD (25,042 cases and 34,915 controls) were used to investigate the association of IBD with ASD data obtained from the PGC and the iPSYCH consortia (N = 46,351). The primary analysis employed the random effects inverse variance weighting (IVW) method. Horizontal pleiotropy was detected using the MR Egger regression and the MR-pleiotropy residual sum and outlier (MR-PRESSO) analysis while heterogeneity was detected using Cochran's Q. The IVW method indicated a positive causal relationship of IBD with ASD (odds ratio (OR) = 1.028, 95% confidence interval (CI) = 1.001–1.056, p = 0.042). In subtype analyses, CD was positively related to ASD (OR = 1.036; 95% CI = 1.004–1.069; p = 0.02); however, UC showed no relationship (OR = 1.021; 95% CI = 0.999–1.044; p = 0.065). In contrast, no evidence of a causal relationship between ASD and IBD or its subtypes (p > 0.05) was found. Our findings provided evidence in support of potential causal associations between IBD/CD and ASD.

在观察性研究中,自闭症谱系障碍(ASD)患者通常伴有炎症性肠病(IBD);然而,这两种疾病之间的潜在因果关系仍然未知。在这项研究中,我们采用了双样本双向孟德尔随机化(MR)方法来评估 ASD 与 IBD 及其主要亚型克罗恩病(CD)和溃疡性结肠炎(UC)之间的因果关系。IBD全基因组关联研究(GWAS)的独立遗传工具(25,042例病例和34,915例对照)被用来研究IBD与ASD的关联,这些数据来自PGC和iPSYCH联盟(N = 46,351)。主要分析采用随机效应逆方差加权法(IVW)。IVW 方法表明,IBD 与 ASD 存在正向因果关系(比值比 (OR) = 1.028,95% 置信区间 (CI) = 1.001-1.056,P = 0.042)。在亚型分析中,CD 与 ASD 呈正相关(OR = 1.036;95% CI = 1.004-1.069;p = 0.02);但 UC 与 ASD 没有关系(OR = 1.021;95% CI = 0.999-1.044;p = 0.065)。相比之下,没有证据表明 ASD 与 IBD 或其亚型之间存在因果关系(p > 0.05)。我们的研究结果为 IBD/CD 与 ASD 之间的潜在因果关系提供了证据支持。
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引用次数: 0
Sex Differences in Cortical Thickness and Neuropsychiatric Symptom Burden Based on APOE4 Homozygosity in Alzheimer's Disease 基于阿尔茨海默病 APOE4 基因同源性的皮质厚度和神经精神症状负担的性别差异。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-09-30 DOI: 10.1002/ajmg.b.33008
Marc A. Khoury, Mila Valcic, Nathan W. Churchill, Alex Di Battista, Vincenzo De Luca, Luis R. Fornazzari, David G. Munoz, Corinne E. Fischer, Tom A. Schweizer

Sex differences in patterns of cortical thickness and neuropsychiatric symptom (NPS) burden were examined among individuals with Alzheimer's disease (AD) and two copies (homozygote carriers) of the e4 allele of the apolipoprotein gene (APOE). A total of 752 participants with a clinical etiologic diagnosis of AD were selected from the National Alzheimer's Coordinating Center (NACC) database. Bayesian multilevel regression was used to examine both the within- and between-sex differences in gray-matter cortical thickness and total NPS burden associated with APOE homozygosity. Female homozygote carriers displayed a high probability of having reduced cortical thickness primarily in medial–lateral temporal regions and a greater burden of NPS, relative to both non-homozygous females and homozygous males. These findings support the notion that APOE4 status affects cortical thickness and symptom burden in men and women with AD differentially, with females showing more pronounced effects in brain areas known to be vulnerable in early AD. Future investigations should attempt to elucidate the proposed pattern of decline longitudinally.

我们研究了阿尔茨海默病(AD)患者和脂蛋白基因(APOE)e4等位基因两个拷贝携带者(同基因携带者)在皮层厚度和神经精神症状(NPS)负担模式方面的性别差异。研究人员从美国国家阿尔茨海默病协调中心(NACC)数据库中选取了 752 名临床病因诊断为阿尔茨海默病的患者。该研究采用贝叶斯多层次回归法,考察了与APOE同基因相关的灰质皮层厚度和NPS总负荷的性别内和性别间差异。与非同源基因女性和同源基因男性相比,女性同源基因携带者的皮质厚度主要在颞叶内外侧区域降低的概率较高,且NPS负担较重。这些发现支持这样一种观点,即APOE4状态对男性和女性AD患者的皮层厚度和症状负担的影响是不同的,女性对已知在AD早期易受影响的脑区的影响更为明显。未来的研究应尝试纵向阐明所提出的衰退模式。
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引用次数: 0
Parenting Stress Index in Caregivers of Individuals With Noonan Syndrome 努南综合征患者照顾者的养育压力指数。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-09-27 DOI: 10.1002/ajmg.b.33009
Lucrezia Perri, Germana Viscogliosi, Valentina Trevisan, Claudia Brogna, Daniela Pia Rosaria Chieffo, Ilaria Contaldo, Paolo Alfieri, Nicolo’ Lentini, Roberta Pastorino, Giuseppe Zampino, Chiara Leoni

Medical professionals frequently underestimate stress level of parents/caregivers of patients with rare disorders as RASopathies, the latter might experience elevated stress levels, with their own health frequently overlooked despite significant responsibilities and hurdles encountered. The aim of this study is to assess the stress experienced by parents of individuals with Noonan syndrome and related conditions. Forty-eight parents (20 fathers; 28 mothers), among the 31 recruited families, completed the Italian version of the Parenting Stress Index–Short Form. Our study shows abnormally elevated scores (≥ 85° percentile) in 35.4% of parents. Data retrieved from subscales reveal a perception of a difficult child in 25% of cases, a dysfunctional parental-child interaction in 20.8%, a general parental distress in 10.4% of cases, and an elevated overall stress in 18.8% of parents. Questionnaires as the Parenting Stress Index–Short Form are valuable tools to evaluate stress in parents/caregivers of children with RASopathies. Evaluation by professionals is fundamental to support parents and caregivers in managing stressors and to enhance their quality of life and relationships. To prevent stress escalation and parents' burnout, an early assessment to tailor a timely treatment should be introduced as soon as possible as good clinical practice.

医疗专业人员经常低估罕见疾病(如 RASopathies)患者的父母/照护者的压力水平,后者可能会经历更高的压力水平,尽管面临重大责任和障碍,他们自身的健康却经常被忽视。本研究旨在评估努南综合征及相关疾病患者父母所承受的压力。在招募的 31 个家庭中,有 48 位父母(20 位父亲;28 位母亲)完成了意大利语版的养育压力指数简表。我们的研究显示,35.4% 的父母得分异常升高(≥ 85° 百分位数)。从分量表中获取的数据显示,25%的父母认为自己的孩子很难管,20.8%的父母认为自己与孩子的互动不正常,10.4%的父母认为自己很苦恼,18.8%的父母认为自己的整体压力增大。育儿压力指数(Parenting Stress Index-Short Form)调查表是评估 RAS 病患儿父母/照顾者压力的重要工具。专业人员的评估对于支持家长和照顾者管理压力、提高生活质量和改善人际关系至关重要。为防止压力升级和家长的职业倦怠,作为良好的临床实践,应尽早进行早期评估,以便及时调整治疗方案。
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引用次数: 0
Cognitive, Social, and Emotional-Behavioral Outcomes in Children and Adolescents With Beckwith–Wiedemann Syndrome 贝克维茨-韦德曼综合症儿童和青少年的认知、社交和情感行为结果。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-09-25 DOI: 10.1002/ajmg.b.33006
Niccolò Butti, Cosimo Urgesi, Alessandro Mussa, Rosario Montirosso

Although Beckwith–Wiedemann syndrome spectrum (BWSp) is not usually associated with intellectual disability, recent evidences calls for further investigation of cognitive development and academic skills in children with BWSp. Moreover, research has documented social difficulties and emotional-behavioral problems associated with BWSp. Nevertheless, a full characterization of socio-emotional development in BWSp is still lacking. In the current study, cognitive and socio-emotional development was assessed in 29 children with BWSp aged 5–18 years, using a test of nonverbal intelligence, a neuropsychological battery covering multiple domains, academic skills tests, and questionnaires evaluating autistic traits and emotional-behavioral problems. As expected, most participants showed adequate performance in cognitive tests. However, the findings also highlighted greater difficulties in language than visuospatial processing, strengths in social perception, as well as slowness in reading and mental calculation. The assessment of emotional-behavioral difficulties indicated a prevalent phenotype characterized by increased anxiety, low self-esteem, social withdrawal and a tendency to control externalizing reactions, but no associations with autistic traits, cognitive outcomes, and the clinical score proposed by the recent Consensus statement. Increased social perception and internalization problems likely result from coping strategies with social and care-related stress. Overall, the findings of this study inform clinical management and genetic counseling for children and adolescents with BWSp.

虽然贝克维茨-韦德曼综合征谱系(BWSp)通常与智力障碍无关,但最近的证据表明,需要进一步研究贝克维茨-韦德曼综合征谱系儿童的认知发展和学习技能。此外,研究还记录了与 BWSp 相关的社交困难和情绪行为问题。然而,目前仍缺乏对 BWSp 儿童社会情感发展的全面描述。在本研究中,我们使用非语言智力测验、涵盖多个领域的神经心理测试、学习技能测试以及评估自闭症特征和情绪行为问题的问卷,对 29 名 5-18 岁的 BWSp 儿童的认知和社会情感发展进行了评估。不出所料,大多数参与者在认知测试中都表现出了足够的能力。然而,研究结果也突出表明,语言方面的困难大于视觉空间处理能力,社会感知能力较强,阅读和心算能力较慢。对情绪行为障碍的评估表明,自闭症患者普遍存在焦虑增加、自卑、社交退缩和倾向于控制外化反应等表型,但与自闭症特征、认知结果和近期共识声明提出的临床评分没有关联。社交感知和内化问题的增加可能是应对社交和护理相关压力的策略所致。总之,本研究的结果可为 BWSp 儿童和青少年的临床管理和遗传咨询提供参考。
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引用次数: 0
Circadian Rhythms Correlated in DNA Methylation and Gene Expression Identified in Human Blood and Implicated in Psychiatric Disorders 在人体血液中发现与 DNA 甲基化和基因表达相关的昼夜节律,并与精神疾病有关。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-09-25 DOI: 10.1002/ajmg.b.33005
Haiyan Tang, Shanshan Chen, Liu Yi, Sheng Xu, Huihui Yang, Zongchang Li, Ying He, Yanhui Liao, Xiaogang Chen, Chunyu Liu, Lin Gu, Ning Yuan, Chao Chen, Jinsong Tang

Circadian rhythms modulate the biology of many human tissues and are driven by a nearly 24-h transcriptional feedback loop. Dynamic DNA methylation may play a role in driving 24-h rhythms of gene expression in the human brain. However, little is known about the degree of circadian regulation between the DNA methylation and the gene expression in the peripheral tissues, including human blood. We hypothesized that 24-h rhythms of DNA methylation play a role in driving 24-h RNA expression in human blood. To test this hypothesis, we analyzed DNA methylation levels and RNA expression in blood samples collected from eight healthy males at six-time points over 24 h. We assessed 442,703 genome-wide CpG sites in methylation and 12,364 genes in expression for 24-h rhythmicity using the cosine model. Our analysis revealed significant rhythmic patterns in 6345 CpG sites and 21 genes. Next, we investigated the relationship between methylation and expression using powerful circadian signals. We found a modest negative correlation (ρ = −0.83, p = 0.06) between the expression of gene TXNDC5 and the methylation at the nearby CpG site (cg19116172). We also observed that circadian CpGs significantly overlapped with genetic risk loci of schizophrenia and autism spectrum disorders. Notably, one gene, TXNDC5, showed a significant correlation between circadian methylation and expression and has been reported to be association with neuropsychiatric diseases.

昼夜节律调节许多人体组织的生物学特性,并由一个近 24 小时的转录反馈回路驱动。动态 DNA 甲基化可能在驱动人脑基因表达的 24 小时节律中发挥作用。然而,人们对包括人体血液在内的外周组织中 DNA 甲基化与基因表达之间的昼夜节律调节程度知之甚少。我们假设 DNA 甲基化的 24 小时节律在驱动人体血液中 24 小时 RNA 表达方面发挥作用。为了验证这一假设,我们分析了从 8 名健康男性血液样本中采集的 24 小时内 6 个时间点的 DNA 甲基化水平和 RNA 表达。分析结果显示,6345 个 CpG 位点和 21 个基因存在明显的节律模式。接下来,我们利用强大的昼夜节律信号研究了甲基化与表达之间的关系。我们发现基因 TXNDC5 的表达与附近 CpG 位点(cg19116172)的甲基化之间存在适度的负相关(ρ = -0.83,p = 0.06)。我们还观察到,昼夜节律CpGs与精神分裂症和自闭症谱系障碍的遗传风险位点明显重叠。值得注意的是,有一个基因 TXNDC5 的昼夜节律甲基化与表达之间存在明显的相关性,并且有报道称该基因与神经精神疾病有关。
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引用次数: 0
Associations of Polygenic Risk for Depression, Traditional Chinese Medicine Constitution, and Depression: A Population-Based Study in Taiwan 抑郁症多基因风险、中医体质与抑郁症的关联:基于台湾人口的研究
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-09-10 DOI: 10.1002/ajmg.b.33007
Yu-Cheng Hsu, Mei-Hsin Su, Chia-Yen Chen, Yen-Feng Lin, Shi-Heng Wang

To comprehensively investigate the risk factors associated with depression, traditional Chinese medicine constitution (TCMC) has been found to be related to depression. However, the underlying mechanism remains unclear. This study examined the association between the concept of unbalanced TCMCs and major depressive disorder (MDD), investigated the overlapping polygenic risks between unbalanced TCMC and MDD, and performed a mediation test to establish potential pathways. In total, 11,030 individuals were recruited from the Taiwan Biobank, and the polygenic risk score (PRS) for MDD for each participant was calculated using the data from the Psychiatric Genomics Consortium. Unbalanced TCMC were classified as yang-deficiency, yin-deficiency, and stasis. The MDD PRS was associated with yang-deficiency odds ratio [OR] per standard deviation increase in standardized (PRS = 1.07, p = 0.0080), yin-deficiency (OR = 1.07, p = 0.0030), and stasis constitution (OR = 1.06, p = 0.0331). Yang-deficiency (OR = 2.07, p < 0.0001) and stasis constitutions (OR = 1.65, p = 0.0015) were associated with an increased risk of MDD. A higher number of unbalanced constitutions was associated with MDD (p < 0.0001). The effect of MDD PRS on MDD was partly mediated by yang-deficiency (10.21%) and stasis (8.41%) constitutions. This study provides evidence for the shared polygenic risk mechanism underlying depression and TCMC and the potential mediating role of TCMC in the polygenic liability for MDD.

为了全面研究与抑郁症相关的风险因素,研究发现传统中医体质(TCMC)与抑郁症有关。然而,其潜在机制仍不清楚。本研究探讨了中医体质不平衡概念与重度抑郁症(MDD)之间的关联,研究了中医体质不平衡与重度抑郁症之间重叠的多基因风险,并进行了中介检验以建立潜在的通路。研究人员从台湾生物样本库中共招募了11,030人,并利用精神疾病基因组学联盟的数据计算了每位参与者的MDD多基因风险评分(PRS)。不平衡的中医药基因组被分为阳虚、阴虚和瘀滞。MDD PRS 与阳虚体质的几率比 [OR] 标准差每增加一个标准差(PRS = 1.07,P = 0.0080)、阴虚体质(OR = 1.07,P = 0.0030)和瘀滞体质(OR = 1.06,P = 0.0331)相关。阳虚体质(OR = 2.07,p = 0.0001)和瘀滞体质(OR = 1.65,p = 0.0015)与 MDD 风险增加有关。更多的不平衡体质与 MDD 相关(p < 0.0001)。阳虚体质(10.21%)和瘀滞体质(8.41%)在一定程度上介导了 MDD PRS 对 MDD 的影响。这项研究为抑郁症和中医体质共同的多基因风险机制以及中医体质在 MDD 多基因责任中的潜在中介作用提供了证据。
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引用次数: 0
The genetic and environmental etiology of novel frequency-driven regional parcellations of abnormal white matter 新频率驱动的区域性异常白质小片的遗传和环境病因。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-08-16 DOI: 10.1002/ajmg.b.33004
Shu-Ju Lin, Nathan A. Gillespie, Randy Notestine, Anthony C. Gamst, Anna M. Chen, Linda K. McEvoy, Matthew S. Panizzon, Jeremy A. Elman, Stephen J. Glatt, Donald J. Hagler Jr, Michael C. Neale, Carol E. Franz, William S. Kremen, Christine Fennema-Notestine

The prevalence of white matter disease increases with age and is associated with cerebrovascular disease, cognitive decline, and risk for dementia. MRI measures of abnormal signal in the white matter (AWM) provide estimates of damage, however, regional patterns of AWM may be differentially influenced by genetic or environmental factors. With our data-driven regional parcellation approach, we created a probability distribution atlas using Vietnam Era Twin Study of Aging (VETSA) data (n = 475, mean age 67.6 years) and applied a watershed algorithm to define separate regional parcellations. We report biometrical twin modeling for five anatomically distinct regions: (1) Posterior, (2) Superior frontal and parietal, (3) Anterior and inferior frontal with deep areas, (4) Occipital, and (5) Anterior periventricular. We tested competing multivariate hypotheses to identify unique influences and to explain sources of covariance among the parcellations. Family aggregation could be entirely explained by additive genetic influences, with additive genetic variance (heritability) ranging from 0.69 to 0.79. Most genetic correlations between parcellations ranged from moderate to high (rg = 0.57–0.85), although two were small (rg = 0.35–0.39), consistent with varying degrees of unique genetic influences. This proof-of-principle investigation demonstrated the value of our novel, data-driven parcellations, with identifiable genetic and environmental differences, for future exploration.

白质疾病的发病率随着年龄的增长而增加,并与脑血管疾病、认知能力下降和痴呆症风险有关。磁共振成像测量白质中的异常信号(AWM)可估算出损伤程度,但AWM的区域模式可能会受到遗传或环境因素的不同影响。通过数据驱动的区域划分方法,我们利用越南老龄化双胞胎研究(VETSA)数据(n = 475,平均年龄 67.6 岁)创建了概率分布图谱,并应用分水岭算法定义了独立的区域划分。我们报告了五个解剖学上不同区域的生物计量双胞胎模型:(1)后部,(2)额叶上部和顶叶,(3)额叶前部和下部及深部,(4)枕叶,以及(5)前脑室周围。我们测试了相互竞争的多元假设,以确定独特的影响因素,并解释各区系之间的协方差来源。家族聚集性完全可以用加性遗传影响来解释,加性遗传变异(遗传率)在 0.69 至 0.79 之间。大多数旁系之间的遗传相关性介于中度到高度之间(rg = 0.57-0.85),但有两个旁系之间的遗传相关性较小(rg = 0.35-0.39),这与不同程度的独特遗传影响是一致的。这项原理验证调查证明了我们新颖的、数据驱动的、具有可识别的遗传和环境差异的旁系结构在未来探索中的价值。
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引用次数: 0
A twin analysis to estimate genetic and environmental factors contributing to variation in weighted gene co-expression network module eigengenes 通过孪生子分析估算导致加权基因共表达网络模块eigengenes变异的遗传和环境因素。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-08-09 DOI: 10.1002/ajmg.b.33003
Nathan A. Gillespie, Tyler R. Bell, Gentry C. Hearn, Jonathan L. Hess, Ming T. Tsuang, Michael J. Lyons, Carol E. Franz, William S. Kremen, Stephen J. Glatt

Multivariate network-based analytic methods such as weighted gene co-expression network analysis are frequently applied to human and animal gene-expression data to estimate the first principal component of a module, or module eigengene (ME). MEs are interpreted as multivariate summaries of correlated gene-expression patterns and network connectivity across genes within a module. As such, they have the potential to elucidate the mechanisms by which molecular genomic variation contributes to individual differences in complex traits. Although increasingly used to test for associations between modules and complex traits, the genetic and environmental etiology of MEs has not been empirically established. It is unclear if, and to what degree, individual differences in blood-derived MEs reflect random variation versus familial aggregation arising from heritable or shared environmental influences. We used biometrical genetic analyses to estimate the contribution of genetic and environmental influences on MEs derived from blood lymphocytes collected on a sample of N = 661 older male twins from the Vietnam Era Twin Study of Aging (VETSA) whose mean age at assessment was 67.7 years (SD = 2.6 years, range = 62–74 years). Of the 26 detected MEs, 14 (56%) had statistically significant additive genetic variation with an average heritability of 44% (SD = 0.08, range = 35%–64%). Despite the relatively small sample size, this demonstration of significant family aggregation including estimates of heritability in 14 of the 26 MEs suggests that blood-based MEs are reliable and merit further exploration in terms of their associations with complex traits and diseases.

基于多变量网络的分析方法(如加权基因共表达网络分析)经常被应用于人类和动物的基因表达数据,以估算模块的第一主成分或模块基因(ME)。模块主成分被解释为模块内各基因相关基因表达模式和网络连通性的多变量总结。因此,它们有可能阐明分子基因组变异导致复杂性状个体差异的机制。虽然越来越多的研究用于检验模块与复杂性状之间的关联,但MEs的遗传和环境病因尚未得到经验性的证实。目前还不清楚血源性 ME 的个体差异是反映随机变异,还是反映遗传或共同环境影响下的家族聚集,以及反映的程度如何。我们使用生物计量遗传分析来估算遗传和环境对血液淋巴细胞中 MEs 的影响,这些血液淋巴细胞来自越南老龄化双胞胎研究(VETSA)的 N = 661 个老年男性双胞胎样本,评估时的平均年龄为 67.7 岁(SD = 2.6 岁,范围 = 62-74 岁)。在检测到的26个ME中,14个(56%)具有统计学意义上显著的加性遗传变异,平均遗传率为44%(SD=0.08,范围=35%-64%)。尽管样本量相对较小,但26个ME中的14个具有明显的家族聚集性,包括估计的遗传率,这表明基于血液的ME是可靠的,值得进一步探讨它们与复杂性状和疾病的关联。
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引用次数: 0
Exploring the genetic architecture of brain structure and ADHD using polygenic neuroimaging-derived scores 利用多基因神经成像衍生评分探索大脑结构和多动症的遗传结构。
IF 1.6 3区 医学 Q3 GENETICS & HEREDITY Pub Date : 2024-07-17 DOI: 10.1002/ajmg.b.32987
Tim van der Es, Sourena Soheili-Nezhad, Nina Roth Mota, Barbara Franke, Jan Buitelaar, Emma Sprooten

Genome-wide association studies (GWAS) have provided valuable insights into the genetic basis of neuropsychiatric disorders and highlighted their complexity. Careful consideration of the polygenicity and complex genetic architecture could aid in the understanding of the underlying brain mechanisms. We introduce an innovative approach to polygenic scoring, utilizing imaging-derived phenotypes (IDPs) to predict a clinical phenotype. We leveraged IDP GWAS data from the UK Biobank, to create polygenic imaging-derived scores (PIDSs). As a proof-of-concept, we assessed genetic variations in brain structure between individuals with ADHD and unaffected controls across three NeuroIMAGE waves (n = 954). Out of the 94 PIDS, 72 exhibited significant associations with their corresponding IDPs in an independent sample. Notably, several global measures, including cerebellum white matter, cerebellum cortex, and cerebral white matter, displayed substantial variance explained for their respective IDPs, ranging from 3% to 5.7%. Conversely, the associations between each IDP and the clinical ADHD phenotype were relatively weak. These findings highlight the growing power of GWAS in structural neuroimaging traits, enabling the construction of polygenic scores that accurately reflect the underlying polygenic architecture. However, to establish robust connections between PIDS and behavioral or clinical traits such as ADHD, larger samples are needed. Our novel approach to polygenic risk scoring offers a valuable tool for researchers in the field of psychiatric genetics.

全基因组关联研究(GWAS)为了解神经精神疾病的遗传基础提供了宝贵的见解,并凸显了其复杂性。仔细考虑多基因性和复杂的遗传结构有助于了解潜在的大脑机制。我们引入了一种创新的多基因评分方法,利用成像衍生表型(IDP)来预测临床表型。我们利用英国生物库中的 IDP GWAS 数据创建了多基因成像衍生评分(PIDS)。作为概念验证,我们评估了多动症患者与未受影响的对照组之间大脑结构的遗传变异,共涉及三次神经影像图像波(n = 954)。在 94 个 PIDS 中,有 72 个与独立样本中相应的 IDPs 有显著关联。值得注意的是,包括小脑白质、小脑皮质和大脑白质在内的几种全局性测量指标显示出其各自的 IDPs 有很大的方差解释率,从 3% 到 5.7% 不等。相反,每个 IDP 与临床多动症表型之间的关联相对较弱。这些发现凸显了全球基因组学分析在结构性神经影像特征方面日益强大的作用,它可以构建多基因评分,准确反映潜在的多基因结构。然而,要在 PIDS 与行为或临床特征(如多动症)之间建立稳固的联系,还需要更大的样本。我们的多基因风险评分新方法为精神遗传学领域的研究人员提供了一种宝贵的工具。
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引用次数: 0
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American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
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