Accurately assessing the carbon transformation and accumulation efficiency of the soil microbial carbon pump (MCP) is fundamental for deciphering microbially mediated soil carbon sequestration potential. Large-scale river damming has significantly expanded the reservoir drawdown zones globally. However, the mechanisms through which reservoir operations impact soil MCP efficiency within these zones remain poorly understood. This study collected surface soils (0–10 cm) across seven locations and three elevations in the Three Gorges Reservoir drawdown zone. Through soil microcosm incubation experiments integrated with isotope tracing and high-throughput sequencing, we investigated the spatial evolution and regulatory mechanisms of soil MCP efficiency along flooding gradient. Results demonstrated that with increasing flooding duration, the microbial metabolic quotient (qCO2) increased from 1.88 to 4.45 μgCO2-C·mg−1MBC·h−1, while microbial carbon accumulation efficiency (mCAE) declined from 38.98% to 21.75%, and amino sugar accumulation efficiency (AAE) decreased from 1.79% to 0.65%. Concomitantly, microbial life-history strategies shifted from K- to r-strategy, and deterministic processes gained prominence in community assembly. Correlation analyses and structural equation modeling identified assembly processes, microbial characteristics, and carbon degradation functional genes as the core drivers of MCP efficiency variation. This study provides the first evidence that reservoir operations significantly reduce soil MCP efficiency in the drawdown zone and reveals the critical regulatory roles of microbial life-history strategies and assembly processes. These findings advance our understanding of MCP processes and their impact on carbon pool stability within reservoir drawdown zones, offering crucial theoretical support for guiding ecological restoration and environmental management in this earth-critical zone, while concurrently enhancing the global carbon sequestration capacity of drawdown zone ecosystems.
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