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Crown-to-ground: Above- and below-ground links mediated by arboreal ants and host tree modify soil aggregation scaling, infiltration, and chemistry 树冠到地面:由树蚁和寄主树介导的地上和地下联系改变了土壤聚集、结垢、渗透和化学
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-30 DOI: 10.1016/j.apsoil.2026.106828
Nicholas Medina , Lauren Schmitt , Ivette Perfecto , John Vandermeer
Soils are increasingly recognized as complex systems, emphasizing the need to study properties such as long-tailed scaling laws and the role of indirect interactions among arboreal soil invertebrates. However, few studies consider the above-below-ground connections mediated by invertebrate activity. Given previous work showing that arboreal ants can affect ground foragers as well as alter foraging behavior on different host trees, it is plausible that ground ant exclusion mediated by persistent above-ground ant nesting could affect soil properties including structure and chemistry. This study analyzes soil aggregation, water infiltration, and macro-chemical data associated with longer-term arboreal ant nesting in tropical agroforest. Results show that, 1) ant nesting maintained scaling law exponents or fractal dimensions of soil aggregate size distributions, and was significantly associated with larger micro-aggregate diameters and log-normal variance in macro-aggregate size distributions, suggesting more consistent aggregation processes similar to host tree effects; 2) areas around trees with dominant ant nests had three-times faster water infiltration than areas around trees without dominant ant nests; and 3) changes in soil carbon and nitrogen stocks by one-quarter depending on host tree. These patterns are consistent with expected effects of ground ant suppression by a keystone arboreal ant, and are supported by previous studies reporting positive ground ant nest effects on soil chemistry and documenting ground ant foraging as a source of soil aggregate fragmentation. This study presents new ecological processes affecting ecosystem-scale functions, and underscores the need for research on indirect interaction cascades to advance fundamental understanding of whole-ecosystem processes.
人们越来越认识到土壤是一个复杂的系统,强调需要研究诸如长尾标度定律和树木土壤无脊椎动物之间间接相互作用的作用等特性。然而,很少有研究考虑由无脊椎动物活动介导的地上地下联系。鉴于先前的研究表明,树蚁可以影响地面觅食者,并改变在不同寄主树上的觅食行为,因此,由持续的地上蚂蚁筑巢介导的地面蚂蚁排斥可能会影响土壤的性质,包括结构和化学。本研究分析了热带农林复合林中土壤团聚体、水分渗透和宏观化学数据与长期树蚁筑巢的关系。结果表明:1)蚁巢保持了土壤团聚体粒径分布的标度指数或分形维数,且与较大的微观团聚体直径和宏观团聚体粒径分布的对数正态方差显著相关,表明其聚集过程与宿主树效应相似;2)树木周围有优势蚁巢区域的入渗速度是树木周围无优势蚁巢区域的3倍;3)不同寄主树种土壤碳氮储量的变化幅度为四分之一。这些模式与keystone树栖蚂蚁对地蚁抑制的预期效果一致,并且得到了先前研究的支持,这些研究报道了地蚁巢对土壤化学的积极影响,并记录了地蚁觅食是土壤团聚体破碎的来源。本研究提出了影响生态系统尺度功能的新生态过程,并强调了间接相互作用级联研究的必要性,以促进对整个生态系统过程的基本理解。
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引用次数: 0
Seasonal responses of soil bacteria, fungi and protists to nitrogen and phosphorus addition in a subtropical forest 亚热带森林土壤细菌、真菌和原生生物对氮磷添加的季节响应
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-11 DOI: 10.1016/j.apsoil.2026.106876
Yanji Liu , Hang-Wei Hu , Yong Zheng , Zi-Kai Liu , Lige Zhang , Ju-Pei Shen
Protists are ubiquitous in soils and play vital roles in biogeochemical cycling in forest ecosystems. While their sensitivity to nitrogen (N) addition is well-documented, the responses to phosphorus (P) enrichment remain less understood. In this study, we examined the seasonal (i.e., spring and autumn) variations in six-year simulated N and P addition, including control, N, P and NP treatments, on the diversity and community composition of soil bacteria, fungi and protists in a subtropical forest. Results showed a significant increase in the α-diversity of soil protists with N or P addition across both seasons, while bacterial and fungal α-diversity remained unchanged compared to the control. Principal coordinate analysis revealed significant differences in microbial community structure across treatments and seasons. Consumer protists dominated the community (90% of total abundance), with their relative abundance showing seasonally consistently positive responses to both N and P additions. Phylum Cercozoa dominated the protistan community in both seasons, with its relative abundance showing a seasonally stable increase in the N treatment compared to the control. The relative abundances of the classes Sarcomonadea and Imbricatea were significantly higher in the samples with N addition. Random forest and structural equation modelling analyses identified soil nutrients (i.e., NH4+-N, available P, and total P) as significant drivers of protist community compositions in both seasons. These findings revealed seasonal sensitivity of soil protists to nutrient addition, indicating their divergent resource-use strategies and adaptive plasticity in response to environmental disturbance.
原生生物普遍存在于土壤中,在森林生态系统的生物地球化学循环中起着重要作用。虽然它们对氮(N)添加的敏感性已被充分证明,但对磷(P)富集的响应仍知之甚少。在本研究中,我们研究了6年模拟N和P添加(包括对照、N、P和NP处理)对亚热带森林土壤细菌、真菌和原生生物多样性和群落组成的季节(即春季和秋季)变化。结果表明,在不同季节,添加N或P显著增加了土壤原生生物的α-多样性,而细菌和真菌的α-多样性与对照相比没有变化。主坐标分析显示,不同处理和季节的微生物群落结构存在显著差异。消费原生生物在群落中占主导地位(占总丰度的90%),它们的相对丰度对氮和磷的添加都表现出季节性的积极响应。在两个季节中,马尾门均占原生动物群落的优势,其相对丰度在施氮处理后呈季节性稳定上升趋势。添加N后,藻门和叠布门的相对丰度显著提高。随机森林和结构方程模型分析发现,土壤养分(即NH4+-N、速效磷和全磷)是两个季节原生生物群落组成的重要驱动因素。这些发现揭示了土壤原生生物对养分添加的季节性敏感性,表明它们对环境干扰的不同资源利用策略和适应可塑性。
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引用次数: 0
Arbuscular mycorrhizal fungi and bacterial communities across selective logging, low-flooded forest and conserved Mayan Forest 选择性采伐、低淹森林和玛雅保护森林的丛枝菌根真菌和细菌群落
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-13 DOI: 10.1016/j.apsoil.2026.106880
Carlos Alberto Puch-Hau , Martin Hassan Polo-Marcial , Bruno Tomio Goto , Mercedes Amparo Quintanilla-Mena , Mayra Alejandra Cañizares-Martínez , Diana E. Adame-Castro , Brisni Z. Pérez-Garfias , Alfredo F. Yanez-Montalvo , Silvia G. Granados-Puerto , Edgar González-Godoy , Magdalena Márquez-Santos , Luis Alberto Lara-Pérez
Promoting biological conservation requires expanding our understanding of species distributions, biodiversity, and their responses to anthropogenic impacts, including unexplored environments that could serve as biological refugia. In the Yucatán Peninsula, Mexico, forestry relies on selective logging practiced under sustainable communal management that is biologically interconnected with seasonally flooded forests. Despite being an important environment for specialized flora, fauna, and carbon storage, soil biodiversity remains insufficiently understood. This study aimed to evaluate and compare the diversity and community composition of bacterial and arbuscular mycorrhizal fungi (AMF) across contrasting environments within a vegetation gradient: selectively logged, (six years post-harvest), conserved, and seasonally flooded low-stature forests by integrating environmental DNA analyses (16S and 18S rRNA genes for bacteria and AMF, respectively) with morphological characterization of AMF glomerospores. AMF community composition (environmental DNA sequences) significantly differed between selective logging and low-flooded forests. Bacterial diversity was similar across sites, but richness was higher in the selective logging. Conserved forest had higher Actinobacteria abundance, while low-flooded forest had more Verrucomicrobia. Additionally, selective logging showed higher Chloroflexi diversity. Despite these differences, bacterial and glomerospores community structures were similar across sites. Redundancy analysis revealed no significant differences between soil chemistry and microbial community structure. Our findings suggest that selective logging maintains soil microbial diversity. Furthermore, seasonally flooded forests harbor distinct AMF assemblages, potentially including undescribed taxa, highlighting their value as unique reservoirs of belowground biodiversity. These microbial patterns may influence key soil functions, such as nutrient cycling and soil carbon dynamics.
促进生物保护需要扩大我们对物种分布、生物多样性及其对人为影响的反应的理解,包括可以作为生物避难所的未开发环境。在墨西哥Yucatán半岛,林业依赖于可持续公共管理下的选择性采伐,这种管理与季节性洪水森林在生物学上相互关联。尽管土壤生物多样性是植物、动物和碳储存的重要环境,但人们对土壤生物多样性的认识仍然不够充分。本研究旨在通过整合环境DNA分析(细菌和AMF的16S和18S rRNA基因分别)和AMF球孢的形态特征,评估和比较不同植被梯度下细菌和丛枝菌根真菌(AMF)的多样性和群落组成:选择性砍伐,(收获后6年),保护和季节性淹没的低海拔森林。选择性采伐与低淹林间AMF群落组成(环境DNA序列)差异显著。不同样地的细菌多样性相似,但在选择性采伐中丰富度更高。保护林放线菌丰度较高,低淹林放线菌丰度较高。此外,选择性测井还显示出较高的氯虫多样性。尽管存在这些差异,但细菌和球孢群落结构在不同地点相似。冗余分析表明,土壤化学和微生物群落结构之间没有显著差异。我们的研究结果表明,选择性采伐保持了土壤微生物的多样性。此外,季节性淹水森林拥有独特的AMF组合,可能包括未描述的分类群,突出了它们作为地下生物多样性独特储存库的价值。这些微生物模式可能影响关键的土壤功能,如养分循环和土壤碳动态。
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引用次数: 0
Insights into the synergistic mechanism of petroleum-degrading bacterial consortium and Mirabilis jalapa L. combined remediation of crude oil-contaminated saline-alkali soil 石油降解菌群与紫茉莉联合修复原油污染盐碱土的协同机制研究
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-09 DOI: 10.1016/j.apsoil.2026.106879
Xinying Zhang , Yuchen Wan , Zongze Chen , Beibei Li , Xiaoyan Liu , Wenjing Yang , Ying Hao , Chuanhua Wang , Ling Yuan , Yongqi Wang
The objective of this study was to investigate the synergistic mechanism of petroleum-degrading bacterial consortium and Mirabilis jalapa L. in the remediation of crude oil-contaminated saline-alkali soil. Key indicators, including TPHs degradation rate, plant biomass, soil salinity and EC, soil enzyme activity, microbial community structure and TPHs metabolism degradation functional genes were evaluated by comparing four different treatment groups (CK: control treatment; PR: phytoremediation treatment; MR: microbial remediation treatment; MPR: Microbial-phytoremediation treatment). The results showed that the MPR treatment achieved a 54.79% TPHs degradation rate, which was the highest among all treatment groups and exceeded that of the CK (7.83%). Combined remediation effectively reduced soil salinity from 4.83 g kg−1 to 4.39 g kg−1. In MPR treatment, the above-ground biomass and plant height of plants increased by 32.89% and 35.23%, respectively, while root biomass and root length increased by 10.7% and 19.8%, respectively. At the microbial level, combined remediation promoted the enrichment of specialized oil-degrading microorganisms (Chloroflexi, Actinobacteria and Proteobacteria) and optimized the microbial community structure. The system significantly enhanced soil enzyme activities. The FDA hydrolysis activity in MPR increased by 30.54% compared with that in CK, and the phosphatase activity in MPR was 93.04% higher than that in CK. Combined remediation not only optimized the community structure but specifically overcame the metabolic inhibition caused by salinity. Metagenomic analysis revealed that the rhizosphere of M. jalapa significantly upregulated key functional genes involved in both alkane (e.g., ladA, xyl) and aromatic hydrocarbon degradation (e.g., bph, dmp). The system enriched specific metabolic pathways (e.g., benzoate degradation [ko00362] and naphthalene degradation [ko00643]), indicating a plant-bacteria interaction-induced metabolic shift towards more efficient pollutant breakdown. These findings provide novel mechanistic insights into how M. jalapa recruits and activates specific functional groups to remediate crude oil in saline-alkali environments.
本研究旨在探讨石油降解菌群与紫茉莉在原油污染盐碱地修复中的协同作用机制。通过比较4个不同处理组(CK:对照处理;PR:植物修复处理;MR:微生物修复处理;MPR:微生物-植物修复处理),评价关键指标,包括TPHs降解率、植物生物量、土壤盐度和EC、土壤酶活性、微生物群落结构和TPHs代谢降解功能基因。结果表明,MPR处理的TPHs降解率为54.79%,在所有处理组中最高,超过了CK的7.83%。联合修复有效地将土壤盐度从4.83 g kg - 1降低到4.39 g kg - 1。在MPR处理下,植株地上生物量和株高分别增加32.89%和35.23%,根系生物量和根长分别增加10.7%和19.8%。在微生物水平上,联合修复促进了专门的石油降解微生物(Chloroflexi, Actinobacteria和Proteobacteria)的富集,并优化了微生物群落结构。该系统显著提高了土壤酶活性。MPR的FDA水解活性比CK提高了30.54%,磷酸酶活性比CK提高了93.04%。联合修复不仅优化了群落结构,而且特别克服了盐度引起的代谢抑制。宏基因组分析显示,茉莉根际显著上调了与烷烃(如ladA、xyl)和芳香烃(如bph、dmp)降解相关的关键功能基因。该系统丰富了特定的代谢途径(例如,苯甲酸酯降解[ko00362]和萘降解[ko00643]),表明植物-细菌相互作用诱导的代谢转向更有效的污染物分解。这些发现为M. jalapa如何招募和激活特定功能基团来修复盐碱环境中的原油提供了新的机制见解。
{"title":"Insights into the synergistic mechanism of petroleum-degrading bacterial consortium and Mirabilis jalapa L. combined remediation of crude oil-contaminated saline-alkali soil","authors":"Xinying Zhang ,&nbsp;Yuchen Wan ,&nbsp;Zongze Chen ,&nbsp;Beibei Li ,&nbsp;Xiaoyan Liu ,&nbsp;Wenjing Yang ,&nbsp;Ying Hao ,&nbsp;Chuanhua Wang ,&nbsp;Ling Yuan ,&nbsp;Yongqi Wang","doi":"10.1016/j.apsoil.2026.106879","DOIUrl":"10.1016/j.apsoil.2026.106879","url":null,"abstract":"<div><div>The objective of this study was to investigate the synergistic mechanism of petroleum-degrading bacterial consortium and <em>Mirabilis jalapa</em> L. in the remediation of crude oil-contaminated saline-alkali soil. Key indicators, including TPHs degradation rate, plant biomass, soil salinity and EC, soil enzyme activity, microbial community structure and TPHs metabolism degradation functional genes were evaluated by comparing four different treatment groups (CK: control treatment; PR: phytoremediation treatment; MR: microbial remediation treatment; MPR: Microbial-phytoremediation treatment). The results showed that the MPR treatment achieved a 54.79% TPHs degradation rate, which was the highest among all treatment groups and exceeded that of the CK (7.83%). Combined remediation effectively reduced soil salinity from 4.83 g kg<sup>−1</sup> to 4.39 g kg<sup>−1</sup>. In MPR treatment, the above-ground biomass and plant height of plants increased by 32.89% and 35.23%, respectively, while root biomass and root length increased by 10.7% and 19.8%, respectively. At the microbial level, combined remediation promoted the enrichment of specialized oil-degrading microorganisms (<em>Chloroflexi</em>, <em>Actinobacteria</em> and <em>Proteobacteria</em>) and optimized the microbial community structure. The system significantly enhanced soil enzyme activities. The FDA hydrolysis activity in MPR increased by 30.54% compared with that in CK, and the phosphatase activity in MPR was 93.04% higher than that in CK. Combined remediation not only optimized the community structure but specifically overcame the metabolic inhibition caused by salinity. Metagenomic analysis revealed that the rhizosphere of <em>M. jalapa</em> significantly upregulated key functional genes involved in both alkane (e.g., <em>ladA</em>, <em>xyl</em>) and aromatic hydrocarbon degradation (e.g., <em>bph</em>, <em>dmp</em>). The system enriched specific metabolic pathways (e.g., benzoate degradation [ko00362] and naphthalene degradation [ko00643]), indicating a plant-bacteria interaction-induced metabolic shift towards more efficient pollutant breakdown. These findings provide novel mechanistic insights into how <em>M. jalapa</em> recruits and activates specific functional groups to remediate crude oil in saline-alkali environments.</div></div>","PeriodicalId":8099,"journal":{"name":"Applied Soil Ecology","volume":"220 ","pages":"Article 106879"},"PeriodicalIF":5.0,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146186019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Insight into the long-term impact of fire in dry pine forests on biological soil crust and underlying soil 火灾对干松林生物土壤结皮和下垫土的长期影响
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-06 DOI: 10.1016/j.apsoil.2026.106837
Kinga Szafrańska , Karolina Chowaniec , Hubert Dul , Joanna Zalewska-Gałosz , Kaja Skubała
Although the impact of wildfires on vegetation and soil properties is well documented, long-term effects on biocrusts and underlying soils in dry temperate pine forests remain unclear. The aim of this study was to determine microbiological parameters of biocrusts and characteristics of two underlying soil layers in a post-fire area 12 years after the wildfire, relative to an unburned forest. The wildfire caused long-lasting effects on biocrusts, leading to altered species composition and reduced species richness of lichens and bryophytes. Biocrusts from the post-fire area had lower chlorophyll a and a + b levels, indicating slow recovery of photosynthetic biomass. Although microbial activity, as reflected by dehydrogenase activity, was lower in soil after the fire than in the control forest, elevated concentrations of exopolysaccharides (EPS) were found. This suggests reduced EPS degradation due to suppressed microbial activity and/or selective enrichment of EPS-producing microorganisms following fire. The increased content of soil organic carbon and total nitrogen in the 1–5 cm soil layer indicates that wildfire can promote a long-lasting accumulation of C and N in the studied ecosystem. Soil pH was significantly higher in the post-fire area, while conductivity showed the opposite trend, but only for soil directly below biocrust. Despite reduced microbial activity and EPS production, post-fire biocrusts showed a stronger influence on underlying soils, as reflected by a significantly higher soil-to-biocrust microbial activity ratio. Finally, local site conditions strongly influenced soil microbiological and chemical parameters, highlighting the importance of accounting for environmental heterogeneity in post-fire management. Consequently, restoration practices should focus on enhancing biocrust functions to accelerate ecosystem recovery, while adapting approaches to site-specific conditions.
尽管野火对植被和土壤特性的影响有充分的文献记载,但对温带干燥松林生物结皮和下垫土壤的长期影响尚不清楚。本研究的目的是确定在火灾发生12年后,相对于未燃烧的森林,火灾后地区的生物外壳的微生物参数和两个下垫土层的特征。野火对生物结皮造成了长期影响,导致地衣和苔藓植物的物种组成发生改变,物种丰富度降低。火灾后区域的生物结皮叶绿素a和a + b水平较低,表明光合生物量恢复缓慢。虽然脱氢酶活性反映出火灾后土壤微生物活性低于对照林,但发现外多糖(EPS)浓度升高。这表明,由于抑制微生物活性和/或火灾后产生EPS的微生物选择性富集,EPS降解减少。1 ~ 5 cm土层土壤有机碳和全氮含量的增加表明,野火可以促进生态系统中C和N的长期积累。火灾后土壤pH值显著升高,电导率呈相反趋势,但仅适用于生物结皮正下方的土壤。尽管火灾后的生物结壳降低了微生物活性和EPS的产生,但对下伏土壤的影响更大,土壤-生物结壳微生物活性比显著提高。最后,当地条件强烈影响土壤微生物和化学参数,强调了在火灾后管理中考虑环境异质性的重要性。因此,恢复实践应侧重于增强生物结皮功能,以加速生态系统的恢复,同时适应具体的场地条件。
{"title":"Insight into the long-term impact of fire in dry pine forests on biological soil crust and underlying soil","authors":"Kinga Szafrańska ,&nbsp;Karolina Chowaniec ,&nbsp;Hubert Dul ,&nbsp;Joanna Zalewska-Gałosz ,&nbsp;Kaja Skubała","doi":"10.1016/j.apsoil.2026.106837","DOIUrl":"10.1016/j.apsoil.2026.106837","url":null,"abstract":"<div><div>Although the impact of wildfires on vegetation and soil properties is well documented, long-term effects on biocrusts and underlying soils in dry temperate pine forests remain unclear. The aim of this study was to determine microbiological parameters of biocrusts and characteristics of two underlying soil layers in a post-fire area 12 years after the wildfire, relative to an unburned forest. The wildfire caused long-lasting effects on biocrusts, leading to altered species composition and reduced species richness of lichens and bryophytes. Biocrusts from the post-fire area had lower chlorophyll <em>a</em> and <em>a</em> <em>+</em> <em>b</em> levels, indicating slow recovery of photosynthetic biomass. Although microbial activity, as reflected by dehydrogenase activity, was lower in soil after the fire than in the control forest, elevated concentrations of exopolysaccharides (EPS) were found. This suggests reduced EPS degradation due to suppressed microbial activity and/or selective enrichment of EPS-producing microorganisms following fire. The increased content of soil organic carbon and total nitrogen in the 1–5 cm soil layer indicates that wildfire can promote a long-lasting accumulation of C and N in the studied ecosystem. Soil pH was significantly higher in the post-fire area, while conductivity showed the opposite trend, but only for soil directly below biocrust. Despite reduced microbial activity and EPS production, post-fire biocrusts showed a stronger influence on underlying soils, as reflected by a significantly higher soil-to-biocrust microbial activity ratio. Finally, local site conditions strongly influenced soil microbiological and chemical parameters, highlighting the importance of accounting for environmental heterogeneity in post-fire management. Consequently, restoration practices should focus on enhancing biocrust functions to accelerate ecosystem recovery, while adapting approaches to site-specific conditions.</div></div>","PeriodicalId":8099,"journal":{"name":"Applied Soil Ecology","volume":"220 ","pages":"Article 106837"},"PeriodicalIF":5.0,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146186074","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nitrogen addition and expansion of Ligularia virgaurea drive decoupling between ammonia and nitrite oxidation 加氮和膨胀的木耳促进了氨与亚硝酸盐氧化的解耦
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-13 DOI: 10.1016/j.apsoil.2026.106831
Miao Zhang , Anning Zhang , Zi Yang , Wanyu Xia , Xuanchen Liu , Xiaoxuan Jiang , Xia Zhao , Hanwen Cui , Guoliang Sha , Sa Xiao , Shuyan Chen , Beat Frey
Soil nitrification is affected by anthropogenic nitrogen (N) deposition and vegetation changes, yet the consequences of their interaction for nitrification and the underlying microbial mechanisms remain largely unknown. Here, we investigated how N addition, plant expansion (Ligularia virgaurea) and their interaction alter the two-step nitrification process through changes in the nitrifiers. We found that N addition increased potential ammonia oxidation (PAO) but not potential nitrite oxidation (PNO), indicating a decoupling of the nitrification processes. Moreover, L. virgaurea expansion amplified this decoupling by mitigating N-addition effect on PAO while leading to a positive N-addition effect on PNO. Most importantly, we discovered that the richness and identity (i.e., community composition) of nitrifiers played a critical role in driving nitrification. These two consecutive processes are governed by different factors: the number of ammonia oxidizing bacteria (AOB) taxa (richness difference) drove changes in PAO, while the members of AOB (replacement) drove changes in PNO. Moreover, co-occurrence network analysis further confirmed that nitrite oxidation was controlled by the identity of specific AOB keystone taxa (Nitrosomonadaceae_MND1), and revealed that L. virgaurea buffered the N-induced simplification of nitrifier networks. Our study highlights the intensification of the decoupling of the nitrification processes with the interplay of multiple drivers, which can be attributed to differential dependencies on shifts of nitrifying communities. This insight is critical for predicting the nitrogen cycle under ongoing environmental change, meaning that preserving both microbial diversity and keystone taxa may be essential for maintaining nitrification functionality.
土壤硝化作用受到人为氮沉降和植被变化的影响,但它们相互作用对硝化作用的影响和潜在的微生物机制在很大程度上仍然未知。本文研究了氮添加、植物扩张(Ligularia virgaurea)及其相互作用如何通过改变硝化物改变两步硝化过程。研究发现,N的添加增加了潜在的氨氧化(PAO),但没有潜在的亚硝酸盐氧化(PNO),表明硝化过程的解耦。此外,L. virgaurea膨胀通过减轻n -添加对PAO的影响而导致正n -添加对PNO的影响而放大了这种去耦。最重要的是,我们发现硝化菌的丰富度和特性(即群落组成)在推动硝化作用中起着关键作用。这两个连续的过程受不同因素的控制:氨氧化菌(AOB)类群数量(丰富度差异)驱动PAO的变化,而AOB成员(替代)驱动PNO的变化。此外,共现网络分析进一步证实了亚硝酸盐氧化受特定AOB关键分类群(Nitrosomonadaceae_MND1)的身份控制,并揭示了L. virgaurea缓冲了n诱导的氮化物网络简化。我们的研究强调了硝化过程与多个驱动因素相互作用的解耦加剧,这可以归因于对硝化群落转移的差异依赖。这一发现对于预测持续环境变化下的氮循环至关重要,这意味着保护微生物多样性和关键分类群可能对维持硝化功能至关重要。
{"title":"Nitrogen addition and expansion of Ligularia virgaurea drive decoupling between ammonia and nitrite oxidation","authors":"Miao Zhang ,&nbsp;Anning Zhang ,&nbsp;Zi Yang ,&nbsp;Wanyu Xia ,&nbsp;Xuanchen Liu ,&nbsp;Xiaoxuan Jiang ,&nbsp;Xia Zhao ,&nbsp;Hanwen Cui ,&nbsp;Guoliang Sha ,&nbsp;Sa Xiao ,&nbsp;Shuyan Chen ,&nbsp;Beat Frey","doi":"10.1016/j.apsoil.2026.106831","DOIUrl":"10.1016/j.apsoil.2026.106831","url":null,"abstract":"<div><div>Soil nitrification is affected by anthropogenic nitrogen (N) deposition and vegetation changes, yet the consequences of their interaction for nitrification and the underlying microbial mechanisms remain largely unknown. Here, we investigated how N addition, plant expansion (<em>Ligularia virgaurea</em>) and their interaction alter the two-step nitrification process through changes in the nitrifiers. We found that N addition increased potential ammonia oxidation (PAO) but not potential nitrite oxidation (PNO), indicating a decoupling of the nitrification processes. Moreover, <em>L. virgaurea</em> expansion amplified this decoupling by mitigating N-addition effect on PAO while leading to a positive N-addition effect on PNO. Most importantly, we discovered that the richness and identity (i.e., community composition) of nitrifiers played a critical role in driving nitrification. These two consecutive processes are governed by different factors: the number of ammonia oxidizing bacteria (AOB) taxa (richness difference) drove changes in PAO, while the members of AOB (replacement) drove changes in PNO. Moreover, co-occurrence network analysis further confirmed that nitrite oxidation was controlled by the identity of specific AOB keystone taxa (<em>Nitrosomonadaceae_MND1</em>), and revealed that <em>L. virgaurea</em> buffered the N-induced simplification of nitrifier networks. Our study highlights the intensification of the decoupling of the nitrification processes with the interplay of multiple drivers, which can be attributed to differential dependencies on shifts of nitrifying communities. This insight is critical for predicting the nitrogen cycle under ongoing environmental change, meaning that preserving both microbial diversity and keystone taxa may be essential for maintaining nitrification functionality.</div></div>","PeriodicalId":8099,"journal":{"name":"Applied Soil Ecology","volume":"220 ","pages":"Article 106831"},"PeriodicalIF":5.0,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146185692","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
End-point distribution of petroleum hydrocarbon-carbon in soil carbon pools during biodegradation is worthy of attention 生物降解过程中土壤碳库中石油烃-碳的终点分布值得关注
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-04 DOI: 10.1016/j.apsoil.2026.106836
Xiumin Li
For decades, research on the bioremediation of petroleum-contaminated soil has primarily emphasized efficient decontamination strategies, focusing predominantly on the quantitative reduction of total petroleum hydrocarbons (TPH). The conventional view often presupposes that petroleum hydrocarbon-carbon (PHs-C) is almost entirely mineralized to CO2, overlooking its end-point distribution within soil carbon pools. In petroleum-contaminated environments, substantial microbial populations utilizing hydrocarbons as a carbon source proliferate. Through the regulatory action of the “microbial carbon pump” (MCP), these microbes assimilate PHs-C into microbial biomass carbon (MBC). Microorganisms utilize metabolic activities to decompose PHs-C into small molecules, which can be combined with soil minerals to form mineral-associated organic carbon (MAOC). Following the death of microorganisms, their residues and secretions characterized by specific chemical structures and resistance interact with soil minerals to form MAOC. Unlike MAOC, particulate organic carbon (POC) is mainly derived from plant residues, microbial aggregates, and decomposition byproducts, and it is more readily utilized by microorganisms. Quantifying the contribution of PHs-C to soil carbon pools enables a deeper understanding of these carbon transformations. This understanding based on the elimination of negative environmental effects is of great significance for establishing a predictive model of carbon cycle in anthropogenically impacted soils, optimizing bioremediation protocols to enhance carbon sequestration, and integrating remediated lands into broader carbon budgeting frameworks.
几十年来,石油污染土壤的生物修复研究主要侧重于有效的去污策略,主要集中在石油总烃(TPH)的定量减少上。传统观点通常假设石油碳氢化合物(ph -c)几乎完全矿化为二氧化碳,而忽略了其在土壤碳库中的终点分布。在石油污染的环境中,大量利用碳氢化合物作为碳源的微生物种群激增。这些微生物通过“微生物碳泵”(MCP)的调控作用,将ph - c同化为微生物生物量碳(MBC)。微生物利用代谢活动将ph - c分解成小分子,这些小分子可以与土壤矿物质结合形成矿物相关有机碳(MAOC)。微生物死亡后,其残留物和分泌物具有特定的化学结构和抗性,与土壤矿物质相互作用形成MAOC。与MAOC不同,颗粒物有机碳(POC)主要来源于植物残体、微生物聚集体和分解副产物,更容易被微生物利用。量化ph - c对土壤碳库的贡献有助于更深入地了解这些碳转化。这种基于消除负面环境影响的认识对于建立人为影响土壤碳循环预测模型、优化生物修复方案以增强碳固存以及将修复土地纳入更广泛的碳预算框架具有重要意义。
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引用次数: 0
Nitrifier denitrification contributes substantially to nitrous oxide production in calcareous farmland soils 氮肥反硝化作用在钙质农田土壤中对氧化亚氮的产生有重要贡献
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-09 DOI: 10.1016/j.apsoil.2026.106867
Na Gao , Zifan Wang , Hongguang Pang , Lei Li , Yue Zhang , Dawei Chen
Intensively managed agricultural soils are a major source of nitrous oxide (N₂O) emissions, yet the N₂O production pathways in calcareous soils remain unclear. Using sterilization assays, 15N18O tracing, and qPCR analysis, we quantified the contributions of abiotic and microbial processes to N₂O production in calcareous farmland soils under long-term plastic film mulching and varying nitrogen (N) fertilization regimes. The results showed that abiotic contributions to N₂O production were negligible (<4%), but these contributions were higher in the no-N control than in the N-fertilized soils. Among microbial pathways, nitrifier denitrification (ND) dominated total N2O production (13.9–93.2%), followed by nitrifier nitrification (NN) and nitrification-coupled denitrification (NCD), with heterotrophic denitrification (HD) being minor (<13.5%). Long-term film mulching significantly reduced N₂O productions, accompanied by decreased potential nitrification rate (PNR), denitrification enzyme activity (DEA), and functional gene abundances (AOB amoA, nirK, and (nirK + nirS)/nosZ ratio), but maintained the dominant N₂O production pathways.Under film mulching, N fertilization significantly increased the contributions of ND and NCD while reducing those of NN and HD relative to the no N control, though no significant differences were observed among the N-fertilization regimes (moderate N rate-F225, high N rate-F380, moderate N plus manure-F225+M). N₂O fluxes strongly correlated (p < 0.01) with NN, ND, NCD, soil TN, SOC, DON, NO₃, and microbial parameters (AOB amoA, nosZ, PNR, DEA). These findings indicate the predominance of ND in the studied calcareous farmland soils and reveal how agricultural practices regulate N₂O production at both process and molecular levels, providing insights for targeted mitigation strategies.
集约化管理的农业土壤是一氧化二氮(N₂O)排放的主要来源,但在钙质土壤中N₂O的生产途径尚不清楚。通过灭菌试验、15N18O示踪和qPCR分析,我们量化了长期地膜覆盖和不同氮肥施肥制度下钙化农田土壤中非生物和微生物过程对N₂O生成的贡献。结果表明,非生物对N₂O产量的贡献可以忽略不计(约4%),但这些贡献在不施氮的土壤中高于施氮土壤。在微生物途径中,硝化反硝化(ND)占主导地位(13.9-93.2%),其次是硝化反硝化(NN)和硝化耦合反硝化(NCD),异养反硝化(HD)占次要地位(13.5%)。长期地膜覆盖显著降低了氮氧化物产量,同时降低了潜在硝化速率(PNR)、反硝化酶活性(DEA)和功能基因丰度(AOB、amoA、nirK和(nirK + nirS)/nosZ比值),但维持了主要的氮氧化物生产途径。与不施氮对照相比,膜下施氮显著提高了ND和NCD的贡献,显著降低了NN和HD的贡献,但不同施氮方式(中等施氮量- f225、高施氮量- f380、中等施氮量+粪肥- f225 +M)之间差异不显著。N₂O通量与NN、ND、NCD、土壤TN、SOC、DON、NO₃−和微生物参数(AOB、amoA、nosZ、PNR、DEA)呈显著正相关(p < 0.01)。这些发现表明,在研究的钙质农田土壤中,ND占主导地位,并揭示了农业实践如何在过程和分子水平上调节N₂O的产生,为有针对性的缓解策略提供见解。
{"title":"Nitrifier denitrification contributes substantially to nitrous oxide production in calcareous farmland soils","authors":"Na Gao ,&nbsp;Zifan Wang ,&nbsp;Hongguang Pang ,&nbsp;Lei Li ,&nbsp;Yue Zhang ,&nbsp;Dawei Chen","doi":"10.1016/j.apsoil.2026.106867","DOIUrl":"10.1016/j.apsoil.2026.106867","url":null,"abstract":"<div><div>Intensively managed agricultural soils are a major source of nitrous oxide (N₂O) emissions, yet the N₂O production pathways in calcareous soils remain unclear. Using sterilization assays, <sup>15</sup>N<img><sup>18</sup>O tracing, and qPCR analysis, we quantified the contributions of abiotic and microbial processes to N₂O production in calcareous farmland soils under long-term plastic film mulching and varying nitrogen (N) fertilization regimes. The results showed that abiotic contributions to N₂O production were negligible (&lt;4%), but these contributions were higher in the no-N control than in the N-fertilized soils. Among microbial pathways, nitrifier denitrification (ND) dominated total N<sub>2</sub>O production (13.9–93.2%), followed by nitrifier nitrification (NN) and nitrification-coupled denitrification (NCD), with heterotrophic denitrification (HD) being minor (&lt;13.5%). Long-term film mulching significantly reduced N₂O productions, accompanied by decreased potential nitrification rate (PNR), denitrification enzyme activity (DEA), and functional gene abundances (AOB <em>amoA</em>, <em>nirK</em>, and (<em>nirK</em> + <em>nirS</em>)/<em>nosZ</em> ratio), but maintained the dominant N₂O production pathways.Under film mulching, N fertilization significantly increased the contributions of ND and NCD while reducing those of NN and HD relative to the no N control, though no significant differences were observed among the N-fertilization regimes (moderate N rate-F<sub>225</sub>, high N rate-F<sub>380</sub>, moderate N plus manure-F<sub>225+M</sub>). N₂O fluxes strongly correlated (<em>p</em> &lt; 0.01) with NN, ND, NCD, soil TN, SOC, DON, NO₃<sup>−</sup>, and microbial parameters (AOB <em>amoA</em>, <em>nosZ</em>, PNR, DEA). These findings indicate the predominance of ND in the studied calcareous farmland soils and reveal how agricultural practices regulate N₂O production at both process and molecular levels, providing insights for targeted mitigation strategies.</div></div>","PeriodicalId":8099,"journal":{"name":"Applied Soil Ecology","volume":"220 ","pages":"Article 106867"},"PeriodicalIF":5.0,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146186040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Composition and function of soil mycobiomes associated with Rhizoctonia root and crown rot in sugar beet 甜菜根核菌根冠腐病土壤真菌群落组成及功能研究
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-11 DOI: 10.1016/j.apsoil.2026.106871
Malick Bill , Sandesh Dangi , Ashok K. Chanda , Jason R. Brantner , Austin K. Lien , Zhaohui Liu , Shyam L. Kandel
Rhizoctonia root and crown rot (RRCR) is one of the major soilborne diseases of sugar beet that causes significant yield loss and exacerbates postharvest losses in the storage piles. To investigate the soil fungal communities (mycobiomes) influencing Rhizoctonia root rot (RRR), we used Illumina sequencing of the ITS rRNA gene to analyze field soils collected over three years (2016–2018) representing different levels of disease severity. Our analysis revealed that overall fungal diversity (alpha-diversity) and community composition (beta-diversity) did not correlate significantly with disease severity. This suggests that disease management strategies focused solely on broad-spectrum shifts in fungal diversity are unlikely to be effective. The soil mycobiome was consistently dominated by the phyla Ascomycota (mean relative abundance: 57.1%) and Basidiomycota (mean relative abundance: 21.1%), with Mrakia and Mortierella among the most prevalent genera. While the pathogen Rhizoctonia was ubiquitous, its relative abundance was generally low (∼2%). The RRR suppressiveness was associated with high abundance and significant expression of biocontrol and symbiotrophic fungal taxa. The current study provides in depth understanding of soil mycobiomes and functions that might be important indicators of Rhizoctonia suppressiveness in sugar beet. Future studies should focus on isolating and characterizing the specific biocontrol (e.g., Cladorrhinum, Chaetomium, and Cladorrhinum spp.) and symbiotrophic fungal taxa identified in this study to test their efficacy against R. solani AG 2–2. Further research is needed to determine the optimal conditions for inoculating sugar beet fields with these candidate microbes, and to assess their impact on RRR severity under field conditions.
根冠腐病(RRCR)是甜菜主要的土传病害之一,造成严重的产量损失,并加剧贮藏桩的采后损失。为了研究影响根腐病(RRR)的土壤真菌群落(mycobiomes),我们使用Illumina测序技术对3年(2016-2018年)不同疾病严重程度的田间土壤进行了ITS rRNA基因测序。我们的分析显示,总体真菌多样性(α -多样性)和群落组成(β -多样性)与疾病严重程度没有显著相关性。这表明,仅仅关注真菌多样性广谱变化的疾病管理策略不太可能有效。土壤真菌群落以子囊菌门(平均相对丰度为57.1%)和担子菌门(平均相对丰度为21.1%)为主,其中以穆拉基亚菌和摩梯菌属最为常见。虽然根丝核菌普遍存在,但其相对丰度普遍较低(约2%)。RRR抑制与生物防治真菌和共生营养真菌类群的高丰度和显著表达相关。本研究提供了对土壤真菌群落及其功能的深入了解,这可能是甜菜根丝核菌抑制的重要指标。未来的研究应集中于分离和鉴定本研究鉴定的特异性生物防治真菌(如Cladorrhinum、Chaetomium和Cladorrhinum spp)和共生营养真菌分类群,以检验其对茄蚜AG 2-2的防治效果。需要进一步研究确定这些候选微生物接种甜菜田的最佳条件,并评估它们在田间条件下对RRR严重程度的影响。
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引用次数: 0
Integrated modeling and experimental approaches reveal the impact of climate change on dung beetle distribution and function 综合模型和实验方法揭示了气候变化对屎壳郎分布和功能的影响
IF 5 2区 农林科学 Q1 SOIL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-11 DOI: 10.1016/j.apsoil.2026.106865
Miguel A. Carreón , Alfredo Ramírez-Hernández , Ernesto I. Badano , Sandra Milena Gelviz-Gelvez , Ana Paola Martínez-Falcón , Felipe Barragán
Climate change is expected to alter the distribution and ecological functions of dung beetles, thus affecting ecosystem functioning due to the role these insects play in nutrient cycling and soil bioturbation. This study integrates species distribution models (SDMs) and field experiments to assess the impact of warming on Canthon humectus and C. indigaceus. Using SDMs calibrated with bioclimatic variables, we projected the future distribution of both species under different climate change scenarios. Field experiments employing open-top chambers were used to simulate temperature increases, enabling us to measure dung removal rates and brood ball size and length. Additionally, we implemented density treatments to evaluate the influence of intraspecific competition on these ecological functions. Our results indicate that C. humectus, the larger species, could experience a minor reduction in the availability of suitable habitat (<3%) under climate scenarios, while C. indigaceus would have negligible changes (±0.5%). Additionally, increased beetle density led to a moderate increase in dung removal but did not significantly alter the beetles' reproductive behavior. Our findings underscore the ecological resilience of C. humectus and C. indigaceus to warming, as well as highlighting the need for further research into density-dependent interactions and long-term climate impacts. By integrating SDMs with experimental data, this study provides a comprehensive approach to understanding species responses to climate change, which is crucial for biodiversity conservation and ecosystem management.
气候变化将改变屎壳虫的分布和生态功能,从而影响生态系统功能,因为屎壳虫在养分循环和土壤生物扰动中起着重要作用。采用物种分布模型(SDMs)和野外实验相结合的方法,研究了气候变暖对humectus和C. indigaceus的影响。利用生物气候变量校准的sdm,预测了不同气候变化情景下这两个物种的未来分布。野外实验采用开顶箱模拟温度升高,使我们能够测量粪便去除率和孵化球的大小和长度。此外,我们采用密度处理来评估种内竞争对这些生态功能的影响。研究结果表明,在不同的气候情景下,体型较大的C. humectus适宜生境的可获得性可能会有轻微的减少(<3%),而C. indigaceus的变化可以忽略不计(±0.5%)。此外,甲虫密度的增加导致粪便清除量的适度增加,但没有显著改变甲虫的繁殖行为。我们的研究结果强调了C. humectus和C. indigaceus对变暖的生态适应能力,并强调了进一步研究密度依赖相互作用和长期气候影响的必要性。通过将sdm与实验数据相结合,本研究为了解物种对气候变化的响应提供了一种全面的方法,这对生物多样性保护和生态系统管理具有重要意义。
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Applied Soil Ecology
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