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A staggering rise of HIV cases in Pakistan 巴基斯坦艾滋病病例的惊人增长
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-03-01 DOI: 10.4103/1995-7645.370153
Abdullah, R. Muhammad, M. Salman, A. Hussain, Amin Ullah, Muddasir Khan
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引用次数: 0
Tapered optical fiber DNA biosensor for detecting Leptospira DNA 用于检测钩端螺旋体DNA的锥形光纤DNA生物传感器
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-03-01 DOI: 10.4103/1995-7645.372293
J. Lam, M. Yaacob, H. Chee
Objective: To establish a DNA detection platform based on a tapered optical fiber to detect Leptospira DNA by targeting the leptospiral secY gene. Methods: The biosensor works on the principle of light propagating in the special geometry of the optical fiber tapered from a waist diameter of 125 to 12 µm. The fiber surface was functionalized through a cascade of chemical treatments and the immobilization of a DNA capture probe targeting the secY gene. The presence of the target DNA was determined from the wavelength shift in the optical transmission spectrum. Results: The biosensor demonstrated good sensitivity, detecting Leptospira DNA at 0.001 ng/µL, and was selective for Leptospira DNA without cross-reactivity with non-leptospiral microorganisms. The biosensor specifically detected DNA that was specifically amplified through the loop-mediated isothermal amplification approach. Conclusions: These findings warrant the potential of this platform to be developed as a novel alternative approach to diagnose leptospirosis.
目的:建立基于锥形光纤的钩端螺旋体DNA检测平台,以钩端螺旋体secY基因为靶点检测钩端螺旋体DNA。方法:生物传感器的工作原理是光在特殊几何形状的光纤中传播,光纤从腰直径125到12µm逐渐变细。纤维表面通过一系列化学处理和固定靶向secY基因的DNA捕获探针实现功能化。目标DNA的存在是由光透射光谱中的波长位移确定的。结果:该传感器灵敏度高,检测浓度为0.001 ng/µL,对钩端螺旋体DNA具有选择性,与非钩端螺旋体微生物无交叉反应。该生物传感器通过环介导的等温扩增方法特异性检测DNA。结论:这些发现保证了该平台作为诊断钩端螺旋体病的一种新的替代方法的潜力。
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引用次数: 1
Mutations in Plasmodium knowlesi Kelch protein 13 and the dihydropteroate synthase gene in clinical samples 诺氏疟原虫Kelch蛋白13和二氢翼酸合成酶基因在临床样本中的突变
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-02-01 DOI: 10.4103/1995-7645.370146
A. Saif
Objective: To determine the genetic diversity, natural selection and mutations in Plasmodium (P.) knowlesi drug resistant molecular markers Kelch 13 and dhps gene in clinical samples of Malaysia. Methods: P. knowlesi full-length gene sequences Kelch 13 gene (PkK13) from 40 samples and dhps gene from 30 samples originating from Malaysian Borneo were retrieved from public databases. Genetic diversity, natural selection, and phylogenetic analysis of gene sequences were analysed using DNAsp v5.10 and MEGA v5.2. Results: Seventy-two single nucleotide polymorphic sites (SNPs) across the full-length PkK13 gene (63 synonymous substitutions and 9 non-synonymous substitutions) with nucleotide diversity of π~0.005 was observed. Analysis of the full-length Pkdhps gene revealed 73 SNPs and π~0.006 (44 synonymous substitutions and 29 non-synonymous substitutions). A high number of haplotypes (PkK13; H=37 and Pkdhps; H=29) with haplotype diversity of Hd ~0.99 were found in both genes, indicating population expansion. Nine mutant alleles were identified in PkK13 amino acid alignment of which, 7 (Asp3Glu, Lys50Gln, Lys53Glu, Ser123Thr, Ser127Pro, Ser149Thr and Ala169Thr) were within the Plasmodium specific domain, 2 (VaI372Ile and Lys424Asn) were in the BTB/POZ domain and no mutation was observed within the kelch propeller domain. The 29 non-synonymous mutations in the Pkdhps gene were novel and only presented in exon 1 and 2. Conclusions: Monitoring the mutations from clinical samples collected from all states of Malaysia along with clinical efficacy studies will be necessary to determine the drug resistance in P. knowlesi.
目的:测定马来西亚临床样本中诺氏疟原虫耐药分子标记Kelch 13和dhps基因的遗传多样性、自然选择和突变。方法:从公共数据库中检索40个样本中的诺氏疟原虫全长基因序列Kelch 13基因(PkK13)和30个马来西亚婆罗洲样本中的dhps基因。使用DNAsp v5.10和MEGA v5.2分析基因序列的遗传多样性、自然选择和系统发育分析。结果:全长PkK13基因共有72个单核苷酸多态性位点(SNPs)(63个同义取代和9个非同义取代),核苷酸多样性为π~0.005。对全长Pkdhps基因的分析揭示了73个SNPs和π~0.006(44个同义取代和29个非同义取代)。在这两个基因中都发现了大量的单倍型(PkK13;H=37和Pkdhps;H=29),单倍型多样性为Hd~0.99,表明种群扩张。在PkK13氨基酸比对中鉴定出9个突变等位基因,其中7个(Asp3Glu、Lys50Gln、Lys53Glu、Ser123Thr、Ser127Pro、Ser149Thr和Ala169Thr)在疟原虫特异性结构域内,2个(VaI372Ile和Lys424Asn)在BTB/POZ结构域内并且在kelch推进器结构域内未观察到突变。Pkdhps基因中的29个非同义突变是新的,仅出现在外显子1和2中。结论:监测从马来西亚各州收集的临床样本中的突变以及临床疗效研究对于确定诺氏疟原虫的耐药性是必要的。
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引用次数: 1
Molecular epidemiology of piliated pneumococcal isolates at a major tertiary hospital in the Klang Valley, Malaysia 马来西亚巴生谷一家大型三级医院中肺炎球菌毛状分离株的分子流行病学研究
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-02-01 DOI: 10.4103/1995-7645.370150
N. Dzaraly, M. Desa, AbdulRahman Muthanna, S. Masri, N. Taib, N. Baharin, N. Sulaiman, Nurul Rahman, N. Palanisamy, Z. Suhaili, Semiat Yusuff, N. Rahman, T. Soh, Fatimah Abdullah8
Objective: To characterise a collection of pili-carrying and none pili-carrying pneumococcal isolates of clinical origin for serotypes, antibiotic resistance and genotype. Methods: In total, 42 clinical isolates were collected between October 2017 and December 2019. Those isolates were analysed for antimicrobial susceptibility, serotype distribution, detection of pneumococcal virulence and pilus genes. Multilocus sequence typing was performed only for piliated isolates, followed by phylogenetic analysis. Results: The common isolation sites among the pneumococcal isolates were tracheal aspirate (28.6%), blood (26.2%), and sputum (23.8%). Fifty percent isolates were resistant to erythromycin, tetracycline (50.0%) and trimethoprim-sulfamethoxazole (43.0%). The most frequent were serotypes 19F (28.6%), 6A/B (23.8%) and 19A (14.3%). Piliated isolates were detected in a small proportion (33.3%); 64.3% were multidrug-resistant. ST320 was the prevalent sequence type among the piliated isolates and genetically related to the Pneumococcal Molecular Epidemiology Network clones Taiwan19F-14 (CC271). In the phylogenetic analysis, some piliated isolates showed a close association having similar ST320, carrying serotype 19A and both pilus genes indicating their clonal spread. Conclusions: Pneumococcal lineages of piliated isolates have been globally disseminated and pili could have played a role in the spread of antibiotic resistant clones.
目的:对临床来源的携带菌毛和不携带菌毛的肺炎球菌分离株的血清型、抗生素耐药性和基因型进行鉴定。方法:2017年10月至2019年12月,共收集42株临床分离株。对这些分离株进行了抗菌药物敏感性、血清型分布、肺炎球菌毒力检测和菌毛基因分析。只对菌毛分离株进行多基因座序列分型,然后进行系统发育分析。结果:肺炎球菌分离株中常见的分离位点为气管分泌物(28.6%)、血液(26.2%)和痰(23.8%),50%的分离株对红霉素、四环素(50.0%)和甲氧苄啶-磺胺甲恶唑(43.0%)具有耐药性,最常见的是血清型19F(28.6%、23.8%和14.3%);耐多药占64.3%。ST320是菌毛分离株中的流行序列型,与肺炎球菌分子流行病学网络克隆Taiwan19F-14(CC271)具有遗传相关性。在系统发育分析中,一些菌毛分离株显示出密切的相关性,具有相似的ST320,携带血清型19A和两个菌毛基因,表明它们的克隆传播。结论:菌毛分离株的肺炎球菌谱系已经在全球传播,菌毛可能在抗生素耐药性克隆的传播中发挥了作用。
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引用次数: 0
Treatment outcomes and adverse drug reactions among patients with drug–resistant tuberculosis receiving all-oral, long–term regimens: First record viewing report from Pakistan 接受所有口服、长期治疗的耐药结核病患者的治疗结果和药物不良反应:来自巴基斯坦的首次记录查看报告
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-02-01 DOI: 10.4103/1995-7645.370148
Hira M. Aslam, Asad Omar, R. Fatima, Usman Rasool, Aashifa Yaqoob, W. Ullah, Aamir Khan, Y. Khan, T. Mallhi
Objective: To assess the effectiveness and adverse drug reactions of all-oral regimens for patients with multidrug-resistant tuberculosis. Methods: This retrospective study was conducted at 10 Programmatic Management of Drug Resistant Tuberculosis sites in Punjab province of Pakistan. Patients receiving treatment for drug resistant tuberculosis from July 2019 to December 2020 with at least interim result i.e. 6th month culture conversion or final outcomes (cured, complete, lost to follow-up, failure, death) available, were included in the study. Data was extracted from electronic data management system. For the reporting and management of adverse drug events, active tuberculosis drug safety monitoring and management was implemented across all sites. All the data was analyzed using SPSS version 22. Results: Out of 947 drug resistant tuberculosis patients included in this study, 579 (68%) of the patients had final outcomes available. Of these, 384 (67.9%) successfully completed their treatment. Out of 368 (32%) patients who had their interim results available, all had their 6th month culture negative. Combining new medications was thought to result in serious adverse outcomes such as QT prolongation. However, this study did not record any severe adverse events among patients. Conclusions: All-oral regimens formulation guided by overall treatment effectiveness resulted in treatment outcomes comparable to those obtained with traditional injectable treatment.
目的:评价所有口服方案对耐多药结核病患者的疗效和不良反应。方法:本回顾性研究在巴基斯坦旁遮普邦省10个耐药结核病项目管理点进行。在2019年7月至2020年12月期间接受耐药性结核病治疗的患者,至少有中期结果,即第6个月的培养转换或最终结果(治愈、完全、失访、失败、死亡)可用于研究。数据是从电子数据管理系统中提取的。为了报告和管理药物不良事件,在所有地点都实施了积极的结核病药物安全监测和管理。所有数据均使用SPSS版本22进行分析。结果:在纳入本研究的947名耐药结核病患者中,579名(68%)患者的最终结果可用。其中384人(67.9%)成功完成了治疗。在368名(32%)中期结果可用的患者中,所有患者的6个月培养结果均为阴性。联合使用新药被认为会导致严重的不良后果,如QT延长。然而,这项研究没有记录患者中的任何严重不良事件。结论:以整体治疗效果为指导的所有口服方案配方的治疗结果与传统注射治疗相当。
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引用次数: 0
Long-term albendazole therapy for diffuse parenchymal neurocysticercosis in an immunocompetent patient: A case report 长期阿苯达唑治疗免疫功能正常患者弥漫性实质性神经囊虫病1例
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-02-01 DOI: 10.4103/1995-7645.368014
Paulus Sugianto, A. Machin, W. Islamiyah, Cindy Cecilia
Rationale: Neurocysticercosis is a neglected tropical disease caused by the larvae of Taenia solium and may occur in immunocompetent people. We report a case of diffuse parenchymal neurocysticercosis mimicking tuberculous meningitis in an immunocompetent patient. Patient concerns: A 24-year-old immunocompetent woman presented with serial focal to generalized seizure, left body weakness, left abducens palsy, chronic cough, and body weight loss. She came from an area where she was unlikely to have contact with Taenia solium. Diagnosis: Diffuse parenchymal neurocysticercosis. Intervention: Valproic acid, dexamethasone and 15 months of albendazole therapy. Outcome: Complete recovery without any neurological sequelae. Lessons: Prolonged anthelminthic treatment may benefit neurocysticercosis patients with multiple cerebral parenchymal lesions.
理由:脑囊虫病是一种被忽视的热带疾病,由猪带绦虫幼虫引起,可能发生在免疫能力强的人群中。我们报告了一例免疫功能正常患者的弥漫性实质性脑囊虫病,类似结核性脑膜炎。患者关注:一名24岁的免疫活性女性出现一系列局灶性全身性癫痫发作、左侧身体无力、左侧外展神经麻痹、慢性咳嗽和体重减轻。她来自一个她不太可能接触到猪带绦虫的地区。诊断:弥漫性实质性脑囊虫病。干预:丙戊酸、地塞米松和阿苯达唑治疗15个月。结果:完全康复,无任何神经后遗症。经验教训:长期驱虫治疗可能有利于患有多发性脑实质病变的脑囊虫病患者。
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引用次数: 0
Application of next-generation sequencing in thalassemia screening: A systematic review and meta-analysis 新一代测序在地中海贫血筛查中的应用:系统回顾和荟萃分析
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-02-01 DOI: 10.4103/1995-7645.370147
Xingyi Fang, Y. Gong, Yanlin Ma, Yuan-hua Huang
Objective: To evaluate the value of next-generation sequencing (NGS) in the prevention and management of thalassemia. Methods: A systematic search was performed in eight databases including China Biomedical Literature Database, Chinese National Knowledge Infrastructure, Chinese Scientific Journals Database, Wanfang database, PubMed, EMBASE, Web of Science, and Cochrane Library from the inception to 1 June 2022. Stata 17.0 and Review Manager 5.4 were used for the meta-analysis. Results: Nine studies containing 14794 participants were included in the meta-analysis. Compared with the routine genetic testing (including Gap-PCR and reverse dot blot), NGS had higher detection rates in screening thalassemia (RR 1.22, 95% CI 1.13-1.31, P<0.01), particularly for the α-thalassaemia mutation carriers (RR 1.24, 95% CI 1.07-1.44, P<0.01). However, no significant difference was found in the screening of β-thalassemia (RR 1.10, 95% CI 0.99-1.23, P>0.05). Conclusions: Compared with routine genetic testing, NGS had a higher detection rate in general, particularly in the detection of α-thalassemia.
目的:评价下一代测序技术(NGS)在地中海贫血防治中的应用价值。方法:系统检索中国生物医学文献数据库、中国国家知识基础设施数据库、中国科学期刊数据库、万方数据库、PubMed、EMBASE、Web of Science、Cochrane Library等8个数据库,检索时间为建库至2022年6月1日。meta分析采用Stata 17.0和Review Manager 5.4。结果:9项研究共14794名受试者被纳入meta分析。与常规基因检测(Gap-PCR和反向点印迹)相比,NGS筛查地中海贫血的检出率更高(RR 1.22, 95% CI 1.13 ~ 1.31, P0.05)。结论:与常规基因检测相比,NGS对α-地中海贫血的检出率普遍较高。
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引用次数: 0
Neutralizing possibilities of whole virion and mRNA vaccine triggered antibodies of Wuhan strain of SARS-CoV-2 with receptor binding domains of spike proteins of Delta and Omicron strains 武汉株严重急性呼吸系统综合征冠状病毒2型抗体与德尔塔毒株和奥密克戎毒株刺突蛋白受体结合域的中和可能性
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-02-01 DOI: 10.4103/1995-7645.370152
Shilpa Barthwal, B. Angel, Annette Angel, V. Joshi, B. Shareef, N. Peer, Poorna Khaneja, A. Khan, Bhawna Sharma, Neha Singh, Ramesh Joshi, Komal Tomar, K. Yadav, Satendra Singh
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引用次数: 1
Coagulation abnormalities and their relationship with bleeding manifestations in patients with dengue-A single center observational study 登革热患者凝血异常及其与出血表现的关系——单中心观察性研究
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-02-01 DOI: 10.4103/1995-7645.370149
Govind R. Patel, I. Thanvi, M. Nadeem, Rahul Kanwaria
Objective: To evaluate coagulation abnormalities and their relationship with bleeding manifestations among patients with dengue. Methods: This observational study was conducted on 292 adult dengue patients who were admitted to a tertiary care hospital of Western India from July 2021 to June 2022. Coagulation tests including prothrombin time (PT), international normalized ratio (INR), activated partial thromboplastin time (aPTT), fibrinogen, and D-dimer were performed. Patients were monitored for bleeding manifestations. Results: Coagulation abnormalities were reported in 42.8% of the patients. Overall, prolonged aPTT was the most common coagulation abnormality (40.8%), followed by low fibrinogen (38.7%), raised D-dimer (31.2%), raised INR (26.0%) and prolonged PT (19.2%). Bleeding manifestations were present in 19.9% patients. PT, INR, aPTT and D-dimer levels were significantly higher (P<0.01) and fibrinogen level was significantly lower (P<0.001) in patients with bleeding compared to patients without bleeding. Patients with bleeding had a significantly higher rate of all coagulation abnormalities than patients without bleeding (P<0.01). Conclusions: Patients with bleeding showed a significantly higher frequency of coagulation abnormalities compared to patients without bleeding. Patients with dengue should be assessed for coagulation abnormalities.
目的:探讨登革热患者凝血功能异常及其与出血表现的关系。方法:本观察性研究对2021年7月至2022年6月在印度西部一家三级医院住院的292名成年登革热患者进行了研究。凝血试验包括凝血酶原时间(PT)、国际标准化比值(INR)、活化部分凝血活酶时间(aPTT)、纤维蛋白原和d -二聚体。监测患者的出血表现。结果:42.8%的患者出现凝血功能异常。总的来说,aPTT延长是最常见的凝血异常(40.8%),其次是纤维蛋白原低(38.7%)、d -二聚体升高(31.2%)、INR升高(26.0%)和PT延长(19.2%)。19.9%的患者有出血表现。出血组PT、INR、aPTT、d -二聚体水平显著高于无出血组(P<0.01),纤维蛋白原水平显著低于无出血组(P<0.001)。出血组各项凝血异常发生率明显高于无出血组(P<0.01)。结论:出血患者的凝血异常频率明显高于无出血患者。登革热患者应评估凝血功能异常。
{"title":"Coagulation abnormalities and their relationship with bleeding manifestations in patients with dengue-A single center observational study","authors":"Govind R. Patel, I. Thanvi, M. Nadeem, Rahul Kanwaria","doi":"10.4103/1995-7645.370149","DOIUrl":"https://doi.org/10.4103/1995-7645.370149","url":null,"abstract":"Objective: To evaluate coagulation abnormalities and their relationship with bleeding manifestations among patients with dengue. Methods: This observational study was conducted on 292 adult dengue patients who were admitted to a tertiary care hospital of Western India from July 2021 to June 2022. Coagulation tests including prothrombin time (PT), international normalized ratio (INR), activated partial thromboplastin time (aPTT), fibrinogen, and D-dimer were performed. Patients were monitored for bleeding manifestations. Results: Coagulation abnormalities were reported in 42.8% of the patients. Overall, prolonged aPTT was the most common coagulation abnormality (40.8%), followed by low fibrinogen (38.7%), raised D-dimer (31.2%), raised INR (26.0%) and prolonged PT (19.2%). Bleeding manifestations were present in 19.9% patients. PT, INR, aPTT and D-dimer levels were significantly higher (P<0.01) and fibrinogen level was significantly lower (P<0.001) in patients with bleeding compared to patients without bleeding. Patients with bleeding had a significantly higher rate of all coagulation abnormalities than patients without bleeding (P<0.01). Conclusions: Patients with bleeding showed a significantly higher frequency of coagulation abnormalities compared to patients without bleeding. Patients with dengue should be assessed for coagulation abnormalities.","PeriodicalId":8559,"journal":{"name":"Asian Pacific journal of tropical medicine","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43837988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Seroprevalence of dengue virus among adults presenting with acute febrile illness at a tertiary care hospital in South India 南印度一家三级护理医院成人急性发热性疾病中登革热病毒的血清流行率
IF 3.1 4区 医学 Q2 Medicine Pub Date : 2023-02-01 DOI: 10.4103/1995-7645.368021
Lavanya Mohanam, P. Shanmugam
{"title":"Seroprevalence of dengue virus among adults presenting with acute febrile illness at a tertiary care hospital in South India","authors":"Lavanya Mohanam, P. Shanmugam","doi":"10.4103/1995-7645.368021","DOIUrl":"https://doi.org/10.4103/1995-7645.368021","url":null,"abstract":"","PeriodicalId":8559,"journal":{"name":"Asian Pacific journal of tropical medicine","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46791159","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Asian Pacific journal of tropical medicine
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