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Multilineage contribution of CD34+ cells in cardiac remodeling after ischemia/reperfusion injury. CD34+ 细胞在缺血/再灌注损伤后心脏重塑过程中的多系统贡献。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-05-05 DOI: 10.1007/s00395-023-00981-8
Jun Xie, Liujun Jiang, Junzhuo Wang, Yong Yin, Ruilin Wang, Luping Du, Ting Chen, Zhichao Ni, Shuaihua Qiao, Hui Gong, Biao Xu, Qingbo Xu

The ambiguous results of multiple CD34+ cell-based therapeutic trials for patients with heart disease have halted the large-scale application of stem/progenitor cell treatment. This study aimed to delineate the biological functions of heterogenous CD34+ cell populations and investigate the net effect of CD34+ cell intervention on cardiac remodeling. We confirmed, by combining single-cell RNA sequencing on human and mouse ischemic hearts and an inducible Cd34 lineage-tracing mouse model, that Cd34+ cells mainly contributed to the commitment of mesenchymal cells, endothelial cells (ECs), and monocytes/macrophages during heart remodeling with distinct pathological functions. The Cd34+-lineage-activated mesenchymal cells were responsible for cardiac fibrosis, while CD34+Sca-1high was an active precursor and intercellular player that facilitated Cd34+-lineage angiogenic EC-induced postinjury vessel development. We found through bone marrow transplantation that bone marrow-derived CD34+ cells only accounted for inflammatory response. We confirmed using a Cd34-CreERT2; R26-DTA mouse model that the depletion of Cd34+ cells could alleviate the severity of ventricular fibrosis after ischemia/reperfusion (I/R) injury with improved cardiac function. This study provided a transcriptional and cellular landscape of CD34+ cells in normal and ischemic hearts and illustrated that the heterogeneous population of Cd34+ cell-derived cells served as crucial contributors to cardiac remodeling and function after the I/R injury, with their capacity to generate diverse cellular lineages.

对心脏病患者进行的多项基于CD34+细胞的治疗试验结果不明确,导致干细胞/祖细胞治疗的大规模应用停滞不前。本研究旨在阐明异源 CD34+ 细胞群的生物学功能,并探讨 CD34+ 细胞干预对心脏重塑的净效应。我们通过对人、小鼠缺血心脏和诱导型Cd34系谱追踪小鼠模型进行单细胞RNA测序,证实Cd34+细胞在心脏重塑过程中主要参与间充质细胞、内皮细胞(EC)和单核细胞/巨噬细胞的形成,并具有不同的病理功能。Cd34+系活化的间充质细胞是心脏纤维化的罪魁祸首,而CD34+Sca-1high是一种活跃的前体细胞和细胞间作用因子,可促进Cd34+系血管生成EC诱导的损伤后血管发育。我们通过骨髓移植发现,骨髓来源的 CD34+ 细胞只负责炎症反应。我们利用 Cd34-CreERT2; R26-DTA 小鼠模型证实,消耗 Cd34+ 细胞可减轻缺血/再灌注(I/R)损伤后心室纤维化的严重程度并改善心脏功能。这项研究提供了CD34+细胞在正常和缺血心脏中的转录和细胞图谱,并说明了Cd34+细胞衍生的异质性细胞群是I/R损伤后心脏重塑和功能的关键贡献者,它们有能力生成不同的细胞系。
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引用次数: 0
Integration of epigenetic regulatory mechanisms in heart failure. 整合心力衰竭的表观遗传调控机制。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-05-04 DOI: 10.1007/s00395-023-00986-3
Miron Sopic, Emma L Robinson, Costanza Emanueli, Prashant Srivastava, Claudio Angione, Carlo Gaetano, Gianluigi Condorelli, Fabio Martelli, Thierry Pedrazzini, Yvan Devaux

The number of "omics" approaches is continuously growing. Among others, epigenetics has appeared as an attractive area of investigation by the cardiovascular research community, notably considering its association with disease development. Complex diseases such as cardiovascular diseases have to be tackled using methods integrating different omics levels, so called "multi-omics" approaches. These approaches combine and co-analyze different levels of disease regulation. In this review, we present and discuss the role of epigenetic mechanisms in regulating gene expression and provide an integrated view of how these mechanisms are interlinked and regulate the development of cardiac disease, with a particular attention to heart failure. We focus on DNA, histone, and RNA modifications, and discuss the current methods and tools used for data integration and analysis. Enhancing the knowledge of these regulatory mechanisms may lead to novel therapeutic approaches and biomarkers for precision healthcare and improved clinical outcomes.

奥米克斯(omics)方法的数量在不断增加。其中,表观遗传学已成为心血管研究界颇具吸引力的研究领域,特别是考虑到它与疾病发展的关联。像心血管疾病这样的复杂疾病必须采用整合不同组学水平的方法(即所谓的 "多组学 "方法)来解决。这些方法结合并共同分析疾病调控的不同层面。在这篇综述中,我们介绍并讨论了表观遗传机制在调控基因表达中的作用,并提供了这些机制如何相互关联并调控心脏疾病发展的综合视角,其中特别关注心力衰竭。我们重点关注 DNA、组蛋白和 RNA 修饰,并讨论了目前用于数据整合和分析的方法和工具。加强对这些调控机制的了解可能会为精准医疗和改善临床结果带来新的治疗方法和生物标志物。
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引用次数: 0
Sexual dimorphism in bidirectional SR-mitochondria crosstalk in ventricular cardiomyocytes. 心室心肌细胞中SR-线粒体双向串扰的性别双态性。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-05-03 DOI: 10.1007/s00395-023-00988-1
Richard T Clements, Radmila Terentyeva, Shanna Hamilton, Paul M L Janssen, Karim Roder, Benjamin Y Martin, Fruzsina Perger, Timothy Schneider, Zuzana Nichtova, Anindhya S Das, Roland Veress, Beth S Lee, Do-Gyoon Kim, Gideon Koren, Matthew S Stratton, Gyorgy Csordas, Federica Accornero, Andriy E Belevych, Sandor Gyorke, Dmitry Terentyev

Calcium transfer into the mitochondrial matrix during sarcoplasmic reticulum (SR) Ca2+ release is essential to boost energy production in ventricular cardiomyocytes (VCMs) and match increased metabolic demand. Mitochondria from female hearts exhibit lower mito-[Ca2+] and produce less reactive oxygen species (ROS) compared to males, without change in respiration capacity. We hypothesized that in female VCMs, more efficient electron transport chain (ETC) organization into supercomplexes offsets the deficit in mito-Ca2+ accumulation, thereby reducing ROS production and stress-induced intracellular Ca2+ mishandling. Experiments using mitochondria-targeted biosensors confirmed lower mito-ROS and mito-[Ca2+] in female rat VCMs challenged with β-adrenergic agonist isoproterenol compared to males. Biochemical studies revealed decreased mitochondria Ca2+ uniporter expression and increased supercomplex assembly in rat and human female ventricular tissues vs male. Importantly, western blot analysis showed higher expression levels of COX7RP, an estrogen-dependent supercomplex assembly factor in female heart tissues vs males. Furthermore, COX7RP was decreased in hearts from aged and ovariectomized female rats. COX7RP overexpression in male VCMs increased mitochondrial supercomplexes, reduced mito-ROS and spontaneous SR Ca2+ release in response to ISO. Conversely, shRNA-mediated knockdown of COX7RP in female VCMs reduced supercomplexes and increased mito-ROS, promoting intracellular Ca2+ mishandling. Compared to males, mitochondria in female VCMs exhibit higher ETC subunit incorporation into supercomplexes, supporting more efficient electron transport. Such organization coupled to lower levels of mito-[Ca2+] limits mito-ROS under stress conditions and lowers propensity to pro-arrhythmic spontaneous SR Ca2+ release. We conclude that sexual dimorphism in mito-Ca2+ handling and ETC organization may contribute to cardioprotection in healthy premenopausal females.

钙在肌质网(SR)Ca2+释放过程中转移到线粒体基质,这对提高心室心肌细胞(VCM)的能量生产和满足增加的代谢需求至关重要。与男性相比,女性心脏线粒体的有丝分裂[Ca2+]较低,产生的活性氧(ROS)较少,但呼吸能力没有变化。我们假设,在雌性 VCM 中,电子传递链(ETC)更有效地组织成超级复合物,抵消了线粒体-Ca2+ 积累的不足,从而减少了 ROS 的产生和应激引起的细胞内 Ca2+ 处理不当。使用线粒体靶向生物传感器进行的实验证实,与雄性大鼠相比,雌性大鼠血管内皮细胞在受到β-肾上腺素能激动剂异丙肾上腺素的挑战时,线粒体ROS和线粒体[Ca2+]含量较低。生化研究显示,大鼠和人类雌性心室组织与雄性相比,线粒体 Ca2+ 单通道表达减少,超级复合物组装增加。重要的是,Western 印迹分析显示,雌性心脏组织与雄性相比,雌激素依赖的超级复合体组装因子 COX7RP 的表达水平更高。此外,在老龄和卵巢切除的雌性大鼠心脏中,COX7RP的表达量减少。在雄性血管内皮细胞中过表达 COX7RP 会增加线粒体超级复合体,降低有丝分裂-ROS 和自发 SR Ca2+ 释放对 ISO 的反应。相反,在雌性血管内皮细胞中通过 shRNA 介导敲除 COX7RP 则会减少超级复合体,增加有丝分裂-ROS,促进细胞内 Ca2+ 处理不当。与雄性相比,雌性血管内皮细胞的线粒体显示出更高的 ETC 亚基并入超级复合物,从而支持更高效的电子传递。这种组织结构加上较低水平的有丝分裂[Ca2+]限制了应激条件下的有丝分裂-ROS,并降低了促心律失常自发SR Ca2+释放的倾向。我们的结论是,线粒体-Ca2+ 处理和 ETC 组织的性双态性可能有助于绝经前健康女性的心脏保护。
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引用次数: 3
Electrophysiological and calcium-handling development during long-term culture of human-induced pluripotent stem cell-derived cardiomyocytes. 人类诱导多能干细胞衍生心肌细胞在长期培养过程中的电生理和钙处理发展。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-04-05 DOI: 10.1007/s00395-022-00973-0
Fitzwilliam Seibertz, Henry Sutanto, Rebekka Dülk, Julius Ryan D Pronto, Robin Springer, Markus Rapedius, Aiste Liutkute, Melanie Ritter, Philipp Jung, Lea Stelzer, Luisa M Hüsgen, Marie Klopp, Tony Rubio, Funsho E Fakuade, Fleur E Mason, Nico Hartmann, Steffen Pabel, Katrin Streckfuss-Bömeke, Lukas Cyganek, Samuel Sossalla, Jordi Heijman, Niels Voigt

Human-induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) are increasingly used for personalised medicine and preclinical cardiotoxicity testing. Reports on hiPSC-CM commonly describe heterogenous functional readouts and underdeveloped or immature phenotypical properties. Cost-effective, fully defined monolayer culture is approaching mainstream adoption; however, the optimal age at which to utilise hiPSC-CM is unknown. In this study, we identify, track and model the dynamic developmental behaviour of key ionic currents and Ca2+-handling properties in hiPSC-CM over long-term culture (30-80 days). hiPSC-CMs > 50 days post differentiation show significantly larger ICa,L density along with an increased ICa,L-triggered Ca2+-transient. INa and IK1 densities significantly increase in late-stage cells, contributing to increased upstroke velocity and reduced action potential duration, respectively. Importantly, our in silico model of hiPSC-CM electrophysiological age dependence confirmed IK1 as the key ionic determinant of action potential shortening in older cells. We have made this model available through an open source software interface that easily allows users to simulate hiPSC-CM electrophysiology and Ca2+-handling and select the appropriate age range for their parameter of interest. This tool, together with the insights from our comprehensive experimental characterisation, could be useful in future optimisation of the culture-to-characterisation pipeline in the field of hiPSC-CM research.

人诱导多能干细胞衍生的心肌细胞(hiPSC-CMs)越来越多地被用于个性化医疗和临床前心脏毒性测试。有关 hiPSC-CM 的报告通常描述了不同的功能读数和发育不全或不成熟的表型特性。具有成本效益的全定义单层培养正逐渐成为主流;然而,利用 hiPSC-CM 的最佳年龄尚不清楚。在这项研究中,我们对长期培养(30-80 天)的 hiPSC-CM 中关键离子电流和 Ca2+ 处理特性的动态发育行为进行了鉴定、跟踪和建模。晚期细胞的 INa 和 IK1 密度明显增加,分别导致上冲速度增加和动作电位持续时间缩短。重要的是,我们的 hiPSC-CM 电生理年龄依赖性硅学模型证实,IK1 是决定老年细胞动作电位缩短的关键离子因素。我们通过一个开源软件界面提供了这一模型,用户可以轻松模拟 hiPSC-CM 电生理学和 Ca2+ 处理,并为他们感兴趣的参数选择适当的年龄范围。这一工具以及我们的综合实验表征所得出的见解,将有助于未来在 hiPSC-CM 研究领域优化从培养到表征的流水线。
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引用次数: 3
Oxygen-sensing pathways below autoregulatory threshold act to sustain myocardial oxygen delivery during reductions in perfusion pressure. 低于自动调节阈值的氧传感途径可在灌注压降低时维持心肌供氧。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-03-29 DOI: 10.1007/s00395-023-00985-4
Cooper M Warne, Salman I Essajee, Selina M Tucker, C Alberto Figueroa, Daniel A Beard, Gregory M Dick, Johnathan D Tune

The coronary circulation has an innate ability to maintain constant blood flow over a wide range of perfusion pressures. However, the mechanisms responsible for coronary autoregulation remain a fundamental and highly contested question. This study interrogated the local metabolic hypothesis of autoregulation by testing the hypothesis that hypoxemia-induced exaggeration of the metabolic error signal improves the autoregulatory response. Experiments were performed on open-chest anesthetized swine during stepwise changes in coronary perfusion pressure (CPP) from 140 to 40 mmHg under normoxic (n = 15) and hypoxemic (n = 8) conditions, in the absence and presence of dobutamine-induced increases in myocardial oxygen consumption (MVO2) (n = 5-7). Hypoxemia (PaO2 < 40 mmHg) decreased coronary venous PO2 (CvPO2) ~ 30% (P < 0.001) and increased coronary blood flow ~ 100% (P < 0.001), sufficient to maintain myocardial oxygen delivery (P = 0.14) over a wide range of CPPs. Autoregulatory responsiveness during hypoxemia-induced reductions in CvPO2 were associated with increases of autoregulatory gain (Gc; P = 0.033) but not slope (P = 0.585) over a CPP range of 120 to 60 mmHg. Preservation of autoregulatory Gc (P = 0.069) and slope (P = 0.264) was observed during dobutamine administration ± hypoxemia. Reductions in coronary resistance in response to decreases in CPP predominantly occurred below CvPO2 values of ~ 25 mmHg, irrespective of underlying vasomotor reserve. These findings support the presence of an autoregulatory threshold under which oxygen-sensing pathway(s) act to preserve sufficient myocardial oxygen delivery as CPP is reduced during increases in MVO2 and/or reductions in arterial oxygen content.

冠状动脉循环具有在广泛的灌注压力范围内保持恒定血流的天生能力。然而,冠状动脉自动调节的机制仍然是一个基本且极具争议的问题。本研究通过测试低氧血症诱导的代谢误差信号放大可改善自动调节反应的假设,对自动调节的局部代谢假说进行了探讨。实验在开胸麻醉猪身上进行,在常氧(n = 15)和低氧(n = 8)条件下,冠状动脉灌注压(CPP)从 140 mmHg 逐步变化到 40 mmHg,在没有多巴酚丁胺诱导心肌耗氧量(MVO2)增加(n = 5-7)和有多巴酚丁胺诱导心肌耗氧量增加(n = 5-7)的情况下进行。在 120 至 60 mmHg 的 CPP 范围内,低氧血症(PaO2 2 (CvPO2) ~ 30% (P 2) 与自动调节增益(Gc;P = 0.033)的增加有关,但与斜率(P = 0.585)无关。在多巴酚丁胺给药±低氧血症期间,可观察到自律性 Gc(P = 0.069)和斜率(P = 0.264)保持不变。随着 CPP 的降低,冠状动脉阻力的降低主要发生在 CvPO2 值约为 25 mmHg 以下,与潜在的血管运动储备无关。这些发现支持存在一个自动调节阈值,在该阈值下,当 MVO2 增加和/或动脉血氧含量降低时,氧传感通路会发挥作用,以保持足够的心肌氧输送。
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引用次数: 0
Multi-omic analysis of the cardiac cellulome defines a vascular contribution to cardiac diastolic dysfunction in obese female mice. 对心脏细胞组的多原子分析确定了血管对肥胖雌性小鼠心脏舒张功能障碍的影响。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-03-29 DOI: 10.1007/s00395-023-00983-6
Malathi S I Dona, Ian Hsu, Alex I Meuth, Scott M Brown, Chastidy A Bailey, Christian G Aragonez, Jacob J Russell, Crisdion Krstevski, Annayya R Aroor, Bysani Chandrasekar, Luis A Martinez-Lemus, Vincent G DeMarco, Laurel A Grisanti, Iris Z Jaffe, Alexander R Pinto, Shawn B Bender

Coronary microvascular dysfunction (CMD) is associated with cardiac dysfunction and predictive of cardiac mortality in obesity, especially in females. Clinical data further support that CMD associates with development of heart failure with preserved ejection fraction and that mineralocorticoid receptor (MR) antagonism may be more efficacious in obese female, versus male, HFpEF patients. Accordingly, we examined the impact of smooth muscle cell (SMC)-specific MR deletion on obesity-associated coronary and cardiac diastolic dysfunction in female mice. Obesity was induced in female mice via western diet (WD) feeding alongside littermates fed standard diet. Global MR blockade with spironolactone prevented coronary and cardiac dysfunction in obese females and specific deletion of SMC-MR was sufficient to prevent obesity-associated coronary and cardiac diastolic dysfunction. Cardiac gene expression profiling suggested reduced cardiac inflammation in WD-fed mice with SMC-MR deletion independent of blood pressure, aortic stiffening, and cardiac hypertrophy. Further mechanistic studies utilizing single-cell RNA sequencing of non-cardiomyocyte cell populations revealed novel impacts of SMC-MR deletion on the cardiac cellulome in obese mice. Specifically, WD feeding induced inflammatory gene signatures in non-myocyte populations including B/T cells, macrophages, and endothelium as well as increased coronary VCAM-1 protein expression, independent of cardiac fibrosis, that was prevented by SMC-MR deletion. Further, SMC-MR deletion induced a basal reduction in cardiac mast cells and prevented WD-induced cardiac pro-inflammatory chemokine expression and leukocyte recruitment. These data reveal a central role for SMC-MR signaling in obesity-associated coronary and cardiac dysfunction, thus supporting the emerging paradigm of a vascular origin of cardiac dysfunction in obesity.

冠状动脉微血管功能障碍(CMD)与心脏功能障碍有关,并可预测肥胖症患者(尤其是女性)的心脏死亡率。临床数据进一步证明,CMD 与射血分数保留型心力衰竭的发生有关,而钙皮质激素受体(MR)拮抗剂可能对肥胖女性心力衰竭患者比男性心力衰竭患者更有效。因此,我们研究了平滑肌细胞(SMC)特异性 MR 缺失对肥胖引起的雌性小鼠冠状动脉和心脏舒张功能障碍的影响。通过西式饮食(WD)喂养雌性小鼠,同时喂养标准饮食的同窝小鼠,诱发肥胖。用螺内酯全面阻断MR可预防肥胖雌性小鼠的冠状动脉和心脏功能障碍,而特异性删除SMC-MR足以预防肥胖相关的冠状动脉和心脏舒张功能障碍。心脏基因表达谱分析表明,SMC-MR 基因缺失的 WD 饲养小鼠的心脏炎症减轻,与血压、主动脉硬化和心脏肥大无关。利用非心肌细胞群的单细胞 RNA 测序进行的进一步机理研究揭示了 SMC-MR 缺失对肥胖小鼠心脏细胞群的新影响。具体来说,摄入 WD 会诱发非心肌细胞群(包括 B/T 细胞、巨噬细胞和内皮细胞)的炎症基因特征,以及冠状动脉 VCAM-1 蛋白表达的增加,而与心脏纤维化无关。此外,SMC-MR 缺失可诱导心脏肥大细胞的基本减少,并阻止 WD 诱导的心脏促炎趋化因子表达和白细胞募集。这些数据揭示了 SMC-MR 信号在肥胖相关的冠状动脉和心脏功能障碍中的核心作用,从而支持了肥胖症心脏功能障碍源于血管的新兴范式。
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引用次数: 1
Membrane remodelling triggers maturation of excitation-contraction coupling in 3D-shaped human-induced pluripotent stem cell-derived cardiomyocytes. 膜重塑引发了三维人类诱导多能干细胞衍生心肌细胞中兴奋-收缩耦合的成熟。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-03-29 DOI: 10.1007/s00395-023-00984-5
Fatemeh Kermani, Matias Mosqueira, Kyra Peters, Enrico D Lemma, Kleopatra Rapti, Dirk Grimm, Martin Bastmeyer, Magdalena Laugsch, Markus Hecker, Nina D Ullrich

The prospective use of human-induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CM) for cardiac regenerative medicine strongly depends on the electro-mechanical properties of these cells, especially regarding the Ca2+-dependent excitation-contraction (EC) coupling mechanism. Currently, the immature structural and functional features of hiPSC-CM limit the progression towards clinical applications. Here, we show that a specific microarchitecture is essential for functional maturation of hiPSC-CM. Structural remodelling towards a cuboid cell shape and induction of BIN1, a facilitator of membrane invaginations, lead to transverse (t)-tubule-like structures. This transformation brings two Ca2+ channels critical for EC coupling in close proximity, the L-type Ca2+ channel at the sarcolemma and the ryanodine receptor at the sarcoplasmic reticulum. Consequently, the Ca2+-dependent functional interaction of these channels becomes more efficient, leading to improved spatio-temporal synchronisation of Ca2+ transients and higher EC coupling gain. Thus, functional maturation of hiPSC-cardiomyocytes by optimised cell microarchitecture needs to be considered for future cardiac regenerative approaches.

人类诱导多能干细胞衍生的心肌细胞(hiPSC-CM)能否用于心脏再生医学,在很大程度上取决于这些细胞的电子机械性能,尤其是Ca2+依赖性兴奋-收缩(EC)耦合机制。目前,hiPSC-CM 不成熟的结构和功能特征限制了其临床应用的进展。在这里,我们证明了特定的微结构对 hiPSC-CM 的功能成熟至关重要。长方体细胞形状的结构重塑和膜内陷促进因子 BIN1 的诱导导致了横向(t)管状结构的形成。这种转变使两个对心肌耦合至关重要的 Ca2+ 通道(肌浆膜上的 L 型 Ca2+ 通道和肌质网上的雷诺丁受体)靠近。因此,这些通道依赖 Ca2+ 的功能性相互作用变得更加有效,从而改善了 Ca2+ 瞬时的时空同步性,提高了心肌耦合增益。因此,未来的心脏再生方法需要考虑通过优化细胞微结构来实现 hiPSC 心肌细胞的功能成熟。
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引用次数: 1
Indirect epigenetic testing identifies a diagnostic signature of cardiomyocyte DNA methylation in heart failure. 间接表观遗传学检测确定了心力衰竭心肌细胞 DNA 甲基化的诊断特征。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-03-20 DOI: 10.1007/s00395-022-00954-3
Christian U Oeing, Mark E Pepin, Kerstin B Saul, Ayça Seyhan Agircan, Yassen Assenov, Tobias S Merkel, Farbod Sedaghat-Hamedani, Tanja Weis, Benjamin Meder, Kaomei Guan, Christoph Plass, Dieter Weichenhan, Dominik Siede, Johannes Backs

Precision-based molecular phenotyping of heart failure must overcome limited access to cardiac tissue. Although epigenetic alterations have been found to underlie pathological cardiac gene dysregulation, the clinical utility of myocardial epigenomics remains narrow owing to limited clinical access to tissue. Therefore, the current study determined whether patient plasma confers indirect phenotypic, transcriptional, and/or epigenetic alterations to ex vivo cardiomyocytes to mirror the failing human myocardium. Neonatal rat ventricular myocytes (NRVMs) and single-origin human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) and were treated with blood plasma samples from patients with dilated cardiomyopathy (DCM) and donor subjects lacking history of cardiovascular disease. Following plasma treatments, NRVMs and hiPSC-CMs underwent significant hypertrophy relative to non-failing controls, as determined via automated high-content screening. Array-based DNA methylation analysis of plasma-treated hiPSC-CMs and cardiac biopsies uncovered robust, and conserved, alterations in cardiac DNA methylation, from which 100 sites were validated using an independent cohort. Among the CpG sites identified, hypo-methylation of the ATG promoter was identified as a diagnostic marker of HF, wherein cg03800765 methylation (AUC = 0.986, P < 0.0001) was found to out-perform circulating NT-proBNP levels in differentiating heart failure. Taken together, these findings support a novel approach of indirect epigenetic testing in human HF.

对心力衰竭进行精准的分子表型分析必须克服获取心脏组织的限制。虽然表观遗传学改变已被发现是病理心脏基因失调的基础,但由于临床获取组织的途径有限,心肌表观基因组学的临床实用性仍然很窄。因此,目前的研究确定了患者血浆是否会给体外心肌细胞带来间接的表型、转录和/或表观遗传学改变,以反映衰竭的人类心肌。新生大鼠心室肌细胞(NRVMs)和单源人类诱导多能干细胞衍生心肌细胞(hiPSC-CMs)用扩张型心肌病(DCM)患者和无心血管疾病史的捐献者的血浆样本进行处理。经血浆处理后,NRVMs和hiPSC-CMs与非衰竭对照组相比发生了明显的肥大,这是通过自动高内涵筛选确定的。对血浆处理过的 hiPSC-CMs 和心脏活检组织进行的基于阵列的 DNA 甲基化分析发现了心脏 DNA 甲基化的稳健且保守的改变,其中 100 个位点通过独立队列进行了验证。在确定的 CpG 位点中,ATG 启动子的低甲基化被确定为高频的诊断标志,其中 cg03800765 甲基化(AUC = 0.986,P
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引用次数: 3
A cardiologist's guide to machine learning in cardiovascular disease prognosis prediction. 心脏病专家心血管疾病预后预测机器学习指南。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-03-20 DOI: 10.1007/s00395-023-00982-7
Karl-Patrik Kresoja, Matthias Unterhuber, Rolf Wachter, Holger Thiele, Philipp Lurz

A modern-day physician is faced with a vast abundance of clinical and scientific data, by far surpassing the capabilities of the human mind. Until the last decade, advances in data availability have not been accompanied by analytical approaches. The advent of machine learning (ML) algorithms might improve the interpretation of complex data and should help to translate the near endless amount of data into clinical decision-making. ML has become part of our everyday practice and might even further change modern-day medicine. It is important to acknowledge the role of ML in prognosis prediction of cardiovascular disease. The present review aims on preparing the modern physician and researcher for the challenges that ML might bring, explaining basic concepts but also caveats that might arise when using these methods. Further, a brief overview of current established classical and emerging concepts of ML disease prediction in the fields of omics, imaging and basic science is presented.

现代医生面临着大量的临床和科学数据,这些数据远远超出了人类的思维能力。直到最近十年,数据可用性的进步才伴随着分析方法的进步。机器学习(ML)算法的出现可能会改善对复杂数据的解读,并有助于将近乎无穷无尽的数据转化为临床决策。ML 已成为我们日常实践的一部分,甚至可能进一步改变现代医学。承认 ML 在心血管疾病预后预测中的作用非常重要。本综述旨在为现代医生和研究人员应对 ML 可能带来的挑战做好准备,解释基本概念以及使用这些方法时可能出现的注意事项。此外,本文还简要概述了目前在全息、成像和基础科学领域已确立的经典和新兴的 ML 疾病预测概念。
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引用次数: 4
Ploidy-stratified single cardiomyocyte transcriptomics map Zinc Finger E-Box Binding Homeobox 1 to underly cardiomyocyte proliferation before birth. 多倍体分层单个心肌细胞转录组学图谱显示,锌指E-Box结合同源染色体1是出生前心肌细胞增殖的基础。
IF 9.5 1区 医学 Q1 Medicine Pub Date : 2023-03-02 DOI: 10.1007/s00395-023-00979-2
Sara Thornby Bak, Eva Bang Harvald, Ditte Gry Ellman, Sabrina Bech Mathiesen, Ting Chen, Shu Fang, Kristian Skriver Andersen, Christina Dühring Fenger, Mark Burton, Mads Thomassen, Ditte Caroline Andersen

Whereas cardiomyocytes (CMs) in the fetal heart divide, postnatal CMs fail to undergo karyokinesis and/or cytokinesis and therefore become polyploid or binucleated, a key process in terminal CM differentiation. This switch from a diploid proliferative CM to a terminally differentiated polyploid CM remains an enigma and seems an obstacle for heart regeneration. Here, we set out to identify the transcriptional landscape of CMs around birth using single cell RNA sequencing (scRNA-seq) to predict transcription factors (TFs) involved in CM proliferation and terminal differentiation. To this end, we established an approach combining fluorescence activated cell sorting (FACS) with scRNA-seq of fixed CMs from developing (E16.5, P1, and P5) mouse hearts, and generated high-resolution single-cell transcriptomic maps of in vivo diploid and tetraploid CMs, increasing the CM resolution. We identified TF-networks regulating the G2/M phases of developing CMs around birth. ZEB1 (Zinc Finger E-Box Binding Homeobox 1), a hereto unknown TF in CM cell cycling, was found to regulate the highest number of cell cycle genes in cycling CMs at E16.5 but was downregulated around birth. CM ZEB1-knockdown reduced proliferation of E16.5 CMs, while ZEB1 overexpression at P0 after birth resulted in CM endoreplication. These data thus provide a ploidy stratified transcriptomic map of developing CMs and bring new insight to CM proliferation and endoreplication identifying ZEB1 as a key player in these processes.

胎儿心脏中的心肌细胞(CMs)会分裂,而出生后的 CMs 则无法进行核分裂和/或细胞分裂,因此会变成多倍体或双核,这是 CM 终末分化的一个关键过程。这种从二倍体增殖 CM 到终末分化的多倍体 CM 的转变仍是一个谜,似乎是心脏再生的一个障碍。在这里,我们利用单细胞 RNA 测序(scRNA-seq)来确定出生前后 CM 的转录格局,从而预测参与 CM 增殖和终末分化的转录因子(TFs)。为此,我们建立了一种方法,将荧光激活细胞分选(FACS)与来自发育中(E16.5、P1 和 P5)小鼠心脏的固定 CM 的 scRNA-seq 结合起来,生成了体内二倍体和四倍体 CM 的高分辨率单细胞转录组图,提高了 CM 的分辨率。我们发现了调控出生前后发育中CM的G2/M阶段的TF网络。ZEB1(Zinc Finger E-Box Binding Homeobox 1,锌指E-Box结合同源框1)是迄今为止在CM细胞周期中未知的TF,它被发现在E16.5时调控循环CM中数量最多的细胞周期基因,但在出生前后被下调。CM ZEB1-knockdown减少了E16.5 CM的增殖,而ZEB1在出生后P0期的过表达则导致CM的内复制。因此,这些数据提供了发育中CM的倍性分层转录组图谱,并为CM增殖和内再复制带来了新的见解,确定了ZEB1是这些过程中的关键角色。
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引用次数: 2
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Basic Research in Cardiology
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