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Retraction Statement: Abnormal expression of long noncoding RNA FGD5-AS1 affects the development of periodontitis through regulating miR-142-3p/SOCS6/NF-κB pathway. 撤回声明:长链非编码RNA FGD5-AS1的异常表达通过调控miR-142-3p/SOCS6/NF-κB通路影响牙周炎的发生。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-24 DOI: 10.1080/21691401.2025.2575232
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引用次数: 0
Exosome-mediated perturbation of the immune-bone metabolism axis: a mechanistic investigation into bone loss in a simulated microgravity environment. 外泌体介导的免疫-骨代谢轴的扰动:模拟微重力环境下骨质流失的机制研究。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-23 DOI: 10.1080/21691401.2025.2576277
Fei Yang, Changshun Chen, Chenghui Yang, Rongjin Chen, Zirui Liu, Lei Wen, Hefang Xiao, Libo Zhou, Bin Geng, Yayi Xia

Spaceflight-related bone loss represents a critical health concern for astronauts undertaking prolonged space missions. This study investigated the mechanistic role of macrophage-derived exosomes in microgravity-induced bone loss using a simulated microgravity model. Phenotypic analysis of macrophages demonstrated that simulated microgravity promoted polarization towards the M2 phenotype and markedly suppressed the secretion of most pro-inflammatory cytokines. Exosomes were isolated and purified from macrophages cultured under normal gravity (1 g) and simulated microgravity (μg) conditions via ultracentrifugation. In vitro experiments revealed that exosomes from the μg group significantly inhibited the proliferation and osteogenic differentiation of bone marrow mesenchymal stem cells (BMSCs) and osteoblasts, without affecting cell migration. Subsequent in vivo studies involving tail-vein injection of exosomes into mice demonstrated a significant reduction in bone mass and impaired new bone formation in the μg group, exhibiting a distinct osteoporotic phenotype. Collectively, this study provides evidence at both cellular and animal levels that macrophage-derived exosomes play a role in microgravity-induced bone loss by inhibiting the proliferation and osteogenic differentiation of BMSCs and osteoblasts in a simulated microgravity environment. These findings offer a potential strategy for targeting the immune-bone metabolism axis to prevent spaceflight-associated osteoporosis.

与太空飞行有关的骨质流失对执行长期太空任务的宇航员来说是一个严重的健康问题。本研究通过模拟微重力模型研究巨噬细胞来源的外泌体在微重力诱导的骨质流失中的机制作用。表型分析表明,模拟微重力促进巨噬细胞向M2表型极化,并显著抑制大多数促炎细胞因子的分泌。从正常重力(1g)和模拟微重力(μg)条件下培养的巨噬细胞中分离纯化外泌体。体外实验显示,μg组外泌体显著抑制骨髓间充质干细胞(BMSCs)和成骨细胞的增殖和成骨分化,不影响细胞迁移。随后对小鼠尾静脉注射外泌体的体内研究表明,在μg组中,骨量显著减少,新骨形成受损,表现出明显的骨质疏松表型。总的来说,本研究在细胞和动物水平上都提供了证据,证明巨噬细胞来源的外泌体通过抑制模拟微重力环境下骨髓间充质干细胞和成骨细胞的增殖和成骨分化,在微重力诱导的骨质流失中发挥作用。这些发现为针对免疫-骨代谢轴预防航天相关骨质疏松症提供了一种潜在的策略。
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引用次数: 0
An integrated in vitro and in silico approach to assess targeted cytotoxicity against MDA-MB-231 triple-negative breast cancer cells with Psidium guajava peel-derived chitosan nanoparticles. 瓜石榴皮衍生壳聚糖纳米颗粒对MDA-MB-231三阴性乳腺癌细胞的靶向细胞毒性研究
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-02-10 DOI: 10.1080/21691401.2025.2462333
Vino Udappusamy, Rajan Thinagaran, Vijayakumar Mayakrishnan, Janani Balakarthikeyan, Priya Kannappan, Sameer Al-Ghamdi, Naif Abdurhman Alrudian, Mohammed Saad Alqahtani, Khalid Albasheer, Chandrabose Sureka, Mahmoud H El-Bidawy, Nesreen Alsanousi, Sahar Gamil, Thiyagarajan Ramesh

Triple-negative breast cancer (TNBC) is a significant global health issue, with high mortality rates. The chemotherapeutic drugs currently used for TNBC have significant side effects, impacting both normal and cancer cells. In this study, we investigated a potential use of fruit peel extract of Psidium guajava (PGP) encapsulated with chitosan nanoparticles (CSNPs) to combat TNBC. The synthesized PGP-CSNPs were characterized using UV-vis spectroscopy, Fourier transform infra-red (FTIR) spectroscopy, TEM and GC-MS. The maximum loading capacity and encapsulation efficacy of PGP-CSNPs were found to be 72.5 ± 0.49% and 92.9 ± 0.10%, respectively. Furthermore, in vitro cytotoxicity was assessed, and the IC50 value for PGP-CSNPs was 50.13 µg/mL. It was observed that PGP-CSNPs could induce apoptosis in MDA-MB-231 cells in dose-dependent manner. Furthermore, molecular docking was performed for bioactive compounds retrieved from PGP-CSNPs against human tumour suppressor proteins Bcl2, and results showed that the PGP-CSNPs had lower binding energy than cisplatin. This suggests that, the synthesized PGP-CSNPs have the potential to serve as a therapeutic agent for tackling TNBC. However, to validate its efficacy in human therapy, furthermore pre-clinical and clinical procedures should be examined, as this is an ongoing and significant step towards developing an effective and safe anticancer drug.

三阴性乳腺癌(TNBC)是一个重大的全球健康问题,死亡率高。目前用于TNBC的化疗药物具有明显的副作用,对正常细胞和癌细胞都有影响。在这项研究中,我们研究了壳聚糖纳米颗粒(csnp)包封番石榴果皮提取物(PGP)对抗TNBC的潜在用途。采用紫外-可见光谱(UV-vis)、傅里叶变换红外光谱(FTIR)、透射电镜(TEM)和气相色谱-质谱(GC-MS)对合成的pgp - csnp进行了表征。pgp - csnp的最大负载量和包封效率分别为72.5±0.49%和92.9±0.10%。进一步进行体外细胞毒性评估,pgp - csnp的IC50值为50.13µg/mL。结果表明,pgp - csnp诱导MDA-MB-231细胞凋亡呈剂量依赖性。此外,我们对从PGP-CSNPs中提取的抗人肿瘤抑制蛋白Bcl2的生物活性化合物进行了分子对接,结果显示PGP-CSNPs的结合能低于顺铂。这表明,合成的pgp - csnp有潜力作为治疗TNBC的药物。然而,为了验证其在人类治疗中的有效性,进一步的临床前和临床程序应该进行检查,因为这是朝着开发一种有效和安全的抗癌药物的持续和重要的一步。
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引用次数: 0
Enhanced cartilage repair using gelatin methacryloyl hydrogels combined with icariin and magnesium-doped bioactive glass. 用明胶甲基丙烯酰水凝胶联合淫羊藿苷和掺镁生物活性玻璃增强软骨修复。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-04-15 DOI: 10.1080/21691401.2025.2490677
Shiyao Liao, Kai Zhou, Yao Kang, Tingxiao Zhao, Yicheng Lin, Jun Lv, Danjie Zhu

Cartilage repair remains challenging due to limited self-healing, poor biocompatibility, and insufficient mechanical properties of current materials. To overcome these issues, we developed a multifunctional composite hydrogel by integrating gelatine methacrylate (GelMA) with magnesium-doped bioactive glass (Mg-BG) and icariin (ICA). SEM analysis revealed that pure GelMA exhibited a highly porous yet loosely organized structure, whereas the addition of Mg-BG and ICA produced a denser, more interconnected porous network that enhances cell adhesion and nutrient diffusion. In vitro, the ICA/Mg-BG/GelMA hydrogel achieved a swelling ratio up to 430% and maintained cell viability above 80% over 5 days. Moreover, qRT-PCR and immunohistochemical analyses demonstrated that the composite hydrogel upregulated chondrogenic markers (SOX9, ACAN, and COL2A1) compared with GelMA alone. Specifically, it downregulates M1 pro-inflammatory markers (CCR7, iNOS, CD86) and upregulates M2 anti-inflammatory markers (ARG1, CD163, CD206), thereby creating a regenerative microenvironment. These results indicate that the synergistic combination of GelMA, Mg-BG, and ICA not only improves the scaffold's mechanical support but also enhances its biological functionality, offering a promising strategy for cartilage repair. Future studies will focus on in vivo validation to further assess its clinical potential.

由于现有材料的自我修复能力有限、生物相容性差和机械性能不足,软骨修复仍然具有挑战性。为了克服这些问题,我们开发了一种多功能复合水凝胶,将甲基丙烯酸明胶(GelMA)与掺镁生物活性玻璃(Mg-BG)和淫羊羊苷(ICA)结合在一起。SEM分析显示,纯GelMA呈现出高度多孔但组织松散的结构,而Mg-BG和ICA的加入产生了更密集,更相互连接的多孔网络,增强了细胞粘附和营养物质扩散。在体外,ICA/Mg-BG/GelMA水凝胶的肿胀率高达430%,并在5天内将细胞存活率维持在80%以上。此外,qRT-PCR和免疫组织化学分析表明,与单独GelMA相比,复合水凝胶上调了软骨生成标志物(SOX9、ACAN和COL2A1)。具体来说,它下调M1促炎标志物(CCR7、iNOS、CD86),上调M2抗炎标志物(ARG1、CD163、CD206),从而创造再生微环境。这些结果表明,GelMA、Mg-BG和ICA的协同组合不仅提高了支架的机械支持,而且增强了支架的生物功能,为软骨修复提供了一种很有前景的策略。未来的研究将集中在体内验证,以进一步评估其临床潜力。
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引用次数: 0
Identification of mitophagy-related biomarkers in human rheumatoid arthritis using machine learning models. 利用机器学习模型鉴定类风湿关节炎中与线粒体自噬相关的生物标志物。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-07-16 DOI: 10.1080/21691401.2025.2533361
Jiayi Chen, Zuhai Huang, Chengyu Qin, Zixiang Pang, Yuanming Chen

Rheumatoid arthritis (RA) is a systemic immune-mediated disease characterized by synovitis and joint cartilage destruction. Although many studies have shown that mitophagy is crucial in the development of bone metabolism disorders, its exact function in rheumatoid arthritis (RA) is still not well understood. This study analysed the GSE77298 dataset from the Gene Expression Omnibus (GEO) to identify differentially expressed genes (DEGs) between rheumatoid arthritis (RA) patients and healthy controls. Mitophagy-related genes (MRGs) were extracted from the literature and screened using bioinformatics techniques, resulting in differentially expressed MRGs (DE-MRGs). The diagnostic value of these genes was assessed using receiver operating characteristic (ROC) curves, and an ANN model was constructed. In the GSE77298 dataset, 267 differentially expressed genes (DEGs) were identified. Weighted gene co-expression network analysis (WGCNA) identified 2191 key module genes, leading to 63 DE-MRGs. Two MRGs, TMEM45A and ZBTB25, were identified as hub genes with areas under the curve (AUC) of 0.991 and 0.911, respectively. The nomogram model demonstrated high diagnostic value. Mitophagy plays a critical role in the progression of rheumatoid arthritis (RA). Identifying two genes associated with mitophagy may aid in the early diagnosis, mechanistic understanding, and treatment of RA.

类风湿性关节炎(RA)是一种以滑膜炎和关节软骨破坏为特征的系统性免疫介导疾病。尽管许多研究表明,线粒体自噬在骨代谢紊乱的发展中起着至关重要的作用,但其在类风湿关节炎(RA)中的确切功能仍不清楚。本研究分析了来自基因表达综合(GEO)的GSE77298数据集,以鉴定类风湿关节炎(RA)患者和健康对照者之间的差异表达基因(DEGs)。从文献中提取线粒体自噬相关基因(MRGs),并利用生物信息学技术进行筛选,得到差异表达MRGs (DE-MRGs)。采用受试者工作特征(ROC)曲线评估这些基因的诊断价值,并构建人工神经网络模型。在GSE77298数据集中,鉴定了267个差异表达基因(DEGs)。加权基因共表达网络分析(WGCNA)鉴定出2191个关键模块基因,得到63个de - mrg。两个MRGs TMEM45A和ZBTB25被鉴定为枢纽基因,曲线下面积(AUC)分别为0.991和0.911。该模型具有较高的诊断价值。线粒体自噬在类风湿关节炎(RA)的进展中起着关键作用。确定与有丝分裂相关的两个基因可能有助于RA的早期诊断、机制理解和治疗。
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引用次数: 0
Revealing the impact of gut microbiota-derived metabolites on depression through network pharmacology. 通过网络药理学揭示肠道微生物衍生代谢物对抑郁症的影响。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-07-24 DOI: 10.1080/21691401.2025.2531752
Si Su, Tengarile A, Ruhan A, Riga Wu, Lisi Wei, La Ta, Wenfeng Huo, Lijun Tong, Jing Zhang, Rilebagen Hu, Li Li

A total of 208 metabolites and 223 targets were initially extracted from the gutMGene v1.0 database. In addition, 1,630 and 1,321 targets were identified using the Similarity Ensemble Approach and Swiss Target Prediction databases, respectively, resulting in 921 overlapping targets. By integrating data from gutMGenev1.0, 13 core targets were finally identified. A microbiota-metabolite-target-signal pathway-disease network was constructed using Cytoscape 3.9.1, revealing 15 metabolites associated with the IL-17, TLR, and PI3K-Akt signalling pathways. Among these, five metabolites exhibited favourable drug similarity and acceptable toxicological profiles. Molecular docking confirmed the stable binding of two key metabolites-succinate and phenylacetylglutamine-to their respective targets. The results showed that succinate and phenylacetylglutamine demonstrated strong binding affinities to IL-1β and GSK3B, both involved in the IL-17, TLR, and PI3K-Akt signalling pathways. IL-17 and TLR4, as important pro-inflammatory cytokines, are closely associated with the development of depression, while the PI3K/AKT signalling pathway plays a key role in its pathogenesis. The present study reveals the potential mechanisms by which gut microbiota influence MDD and provides a scientific basis and a comprehensive research framework for future investigations.

最初从gutMGene v1.0数据库中提取了208个代谢物和223个靶点。此外,使用相似集成方法和瑞士目标预测数据库分别识别了1,630和1,321个目标,其中921个重叠目标。通过整合gutMGenev1.0的数据,最终确定13个核心靶点。使用Cytoscape 3.9.1构建微生物-代谢物-靶标信号通路-疾病网络,揭示了与IL-17、TLR和PI3K-Akt信号通路相关的15种代谢物。其中,五种代谢物表现出良好的药物相似性和可接受的毒理学特征。分子对接证实了两种关键代谢物-琥珀酸盐和苯乙酰谷氨酰胺-与各自靶标的稳定结合。结果表明,琥珀酸盐和苯乙酰谷氨酰胺与IL-1β和GSK3B具有很强的结合亲和力,两者都参与IL-17、TLR和PI3K-Akt信号通路。IL-17和TLR4作为重要的促炎细胞因子,与抑郁症的发生发展密切相关,而PI3K/AKT信号通路在其发病机制中起关键作用。本研究揭示了肠道菌群影响MDD的潜在机制,为今后的研究提供了科学依据和全面的研究框架。
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引用次数: 0
Retraction: Long non-coding RNA NKILA weakens TNF-α-induced inflammation of MRC-5 cells by miR-21 up-regulation. 撤回:长链非编码RNA NKILA通过上调miR-21减弱TNF-α-诱导的MRC-5细胞炎症。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-08-12 DOI: 10.1080/21691401.2025.2543678
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引用次数: 0
Retraction Statement: Long non-coding RNA SDPR-AS affects the development of non-small cell lung cancer by regulating SDPR through p38 MAPK/ERK signals. 撤回声明:长链非编码RNA SDPR- as通过p38 MAPK/ERK信号调控SDPR影响非小细胞肺癌的发展。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-24 DOI: 10.1080/21691401.2025.2575231
{"title":"Retraction Statement: Long non-coding RNA SDPR-AS affects the development of non-small cell lung cancer by regulating SDPR through p38 MAPK/ERK signals.","authors":"","doi":"10.1080/21691401.2025.2575231","DOIUrl":"https://doi.org/10.1080/21691401.2025.2575231","url":null,"abstract":"","PeriodicalId":8736,"journal":{"name":"Artificial Cells, Nanomedicine, and Biotechnology","volume":"53 1","pages":"490"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145367375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Retraction Statement: Long non-coding RNA UCA1 exerts growth modulation by miR-15a in human thyroid cancer TPC-1 cells. 撤回声明:长链非编码RNA UCA1在人甲状腺癌TPC-1细胞中发挥miR-15a的生长调节作用。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-24 DOI: 10.1080/21691401.2025.2575235
{"title":"Retraction Statement: Long non-coding RNA UCA1 exerts growth modulation by miR-15a in human thyroid cancer TPC-1 cells.","authors":"","doi":"10.1080/21691401.2025.2575235","DOIUrl":"https://doi.org/10.1080/21691401.2025.2575235","url":null,"abstract":"","PeriodicalId":8736,"journal":{"name":"Artificial Cells, Nanomedicine, and Biotechnology","volume":"53 1","pages":"493"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145367406","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Coarse-grained molecular dynamics simulation analysis of the effects of phospholipid and cholesterol on electroporation. 磷脂和胆固醇对电穿孔影响的粗粒度分子动力学模拟分析。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-11-11 DOI: 10.1080/21691401.2025.2583017
Qiongyao Mou, Po Hao, Tian Li, Jinan Deng, Ning Hu, Jun Yang

Membrane composition is a critical factor for electroporation. Although existing research focuses on pore formation driven by local phospholipid headgroup clusters, the large-scale membrane dynamics post-pore formation remain underexplored. In this study, coarse-grained (CG) molecular dynamics (MD) simulations were employed to investigate the effects of phospholipid headgroups (PC, PE and PS), tail characteristics (DLPC, DPPC, POPC and DOPC) and cholesterol (CHOL) content (0 mol%-50 mol%) on membrane electroporation. The results demonstrate that membrane structural parameters, such as area per lipid, hydrophobic layer thickness and interfacial water penetration depth, significantly influence the electroporation threshold electric field and transmembrane substance flux. Phospholipid headgroups can modulate the area per lipid and hydrophobic layer thickness through their size, hydrogen bonding and charge. Regarding phospholipid tails, increasing their length and unsaturation strengthens the hydrophobic layer, and thereby inhibits electroporation. The incorporation of CHOL into the membrane leads to tighter lipid packing, increased layer thickness and restricted water penetration, all of which elevate the threshold electric field. After electroporation, CHOL reduces transmembrane flux by enhancing line tension, although this inhibitory effect is limited at higher concentrations. The simulation results align well with existing experimental data, suggesting our approach can guide protocol design and highlight membrane composition's critical role in electroporation efficiency.

膜的组成是电穿孔的关键因素。虽然现有的研究主要集中在局部磷脂头团簇驱动的孔隙形成上,但对孔隙形成后的大规模膜动力学仍未充分探索。本研究采用粗粒度(CG)分子动力学(MD)模拟研究了磷脂头基团(PC、PE和PS)、尾部特征(DLPC、DPPC、POPC和DOPC)和胆固醇(CHOL)含量(0 mol% ~ 50 mol%)对膜电穿孔的影响。结果表明,膜结构参数(如每脂面积、疏水层厚度和界面水渗透深度)对电穿孔阈值电场和跨膜物质通量有显著影响。磷脂头基可以通过其大小、氢键和电荷调节脂质面积和疏水层厚度。对于磷脂尾部,增加其长度和不饱和度可以增强疏水层,从而抑制电穿孔。CHOL与膜的结合导致脂质堆积更紧密,层厚度增加,水渗透受限,所有这些都提高了阈值电场。电穿孔后,CHOL通过增强线张力降低跨膜通量,尽管这种抑制作用在较高浓度时有限。模拟结果与现有实验数据吻合良好,表明我们的方法可以指导方案设计,并突出膜组成对电穿孔效率的关键作用。
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引用次数: 0
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Artificial Cells, Nanomedicine, and Biotechnology
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