首页 > 最新文献

Biodiversitas最新文献

英文 中文
Isolation of Pediococcus pentosaceus to compete Vibrio harveyi in the shrimp Litopenaeus vannamei hatchery 在凡纳滨对虾孵化场中分离戊绥小球菌与哈维弧菌竞争
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.13057/biodiv/d240853
RUBIYANTO WIDODO HALIMAN, METHODIUS DIGNA KURNIA, MOHAMMAD NURUL IMAN, SATRIA AJI KUSUMA, BENI HALALLUDIN, RIFKY RIZKIANTINO, PUTRI PURNAMA SARI, MUFTI RAHAYU, RACHMAWATI NUR FITRIANA, BESTRAN VIRLANDO PANJAITAN, ADINDA KINASIH JACINDA, HENDRI LAIMAN
Abstract. Haliman RW, Kurnia MD, Iman MN, Kusuma SA, Halalludin B, Rizkiantino R, Sari PP, Rahayu M, Fitriana RN, Panjaitan BV, Jacinda AK, Laiman H. 2023. Isolation of Pediococcus pentosaceus to compete Vibrio harveyi in the shrimp Litopenaeus vannamei hatchery. Biodiversitas 24: 4514-4520. Shrimp is an aquaculture commodity with high economic value, and is widely cultured in Asia and South America. Among diseases in the shrimp hatchery, vibriosis is considered as the main problem, with emphasize on Vibrio harveyi infection. Probiotics are life microbes with defense mechanism against pathogens, and have been used in aquaculture as an alternative strategy in disease management through application into the water or through the feed. In order to renew the current probiotics available, exploration of probiotic candidate isolates with ability to compete with the luminous bacteria has been done in mangrove area of Merak Belantung, Kalianda, Lampung Province, Indonesia, and also from shrimp intestine, raised in the tank of research facility. Nine bacteria isolates were obtained from this exploration, and based on the references, 4 isolates had the potential to compete Vibrio harveyi. Based on the 16S rRNA sequencing result, those 4 isolates were Bacillus cereus, B. aryabhattai, Weisella paramesenteroides, and Pediococcus pentosaceus. Further analysis of in vitro test using agar-well diffusion inhibition method and in vivo test showed that among those 4 isolates, only P. pentosaceus had strong antibacterial activity against V. harveyi and could be used as probiotic in shrimp rearing with optimal dose at 5-10 µL L-1.
摘要Haliman RW, Kurnia MD, Iman MN, Kusuma SA, Halalludin B, Rizkiantino R, Sari PP, Rahayu M, Fitriana RN, Panjaitan BV, Jacinda AK, Laiman H. 2023。在凡纳滨对虾孵化场中分离戊绥小球菌与哈维弧菌竞争。生物多样性,24:4514-4520。虾是一种具有较高经济价值的水产养殖商品,在亚洲和南美洲广泛养殖。在对虾孵化场的病害中,弧菌病被认为是主要问题,重点是哈维弧菌感染。益生菌是一种对病原体具有防御机制的生命微生物,在水产养殖中被应用于水体或饲料中,作为疾病管理的替代策略。为了更新现有的益生菌,在印度尼西亚南榜省Kalianda的Merak Belantung红树林地区以及研究设施水箱中饲养的虾肠中进行了具有与发光菌竞争能力的益生菌候选菌株的探索。共分离得到9株细菌,根据文献资料,其中4株具有与哈维弧菌竞争的潜力。根据16S rRNA测序结果,这4株分离物分别为蜡样芽孢杆菌、aryabhattai芽孢杆菌、副肠球菌魏氏菌和戊糖Pediococcus。进一步采用琼脂孔扩散抑制法和体内试验分析表明,4株分离菌中只有P. pentosaceus对哈氏弧菌具有较强的抑菌活性,其最佳剂量为5 ~ 10µL L-1,可作为养殖对虾的益生菌。
{"title":"Isolation of Pediococcus pentosaceus to compete Vibrio harveyi in the shrimp Litopenaeus vannamei hatchery","authors":"RUBIYANTO WIDODO HALIMAN, METHODIUS DIGNA KURNIA, MOHAMMAD NURUL IMAN, SATRIA AJI KUSUMA, BENI HALALLUDIN, RIFKY RIZKIANTINO, PUTRI PURNAMA SARI, MUFTI RAHAYU, RACHMAWATI NUR FITRIANA, BESTRAN VIRLANDO PANJAITAN, ADINDA KINASIH JACINDA, HENDRI LAIMAN","doi":"10.13057/biodiv/d240853","DOIUrl":"https://doi.org/10.13057/biodiv/d240853","url":null,"abstract":"Abstract. Haliman RW, Kurnia MD, Iman MN, Kusuma SA, Halalludin B, Rizkiantino R, Sari PP, Rahayu M, Fitriana RN, Panjaitan BV, Jacinda AK, Laiman H. 2023. Isolation of Pediococcus pentosaceus to compete Vibrio harveyi in the shrimp Litopenaeus vannamei hatchery. Biodiversitas 24: 4514-4520. Shrimp is an aquaculture commodity with high economic value, and is widely cultured in Asia and South America. Among diseases in the shrimp hatchery, vibriosis is considered as the main problem, with emphasize on Vibrio harveyi infection. Probiotics are life microbes with defense mechanism against pathogens, and have been used in aquaculture as an alternative strategy in disease management through application into the water or through the feed. In order to renew the current probiotics available, exploration of probiotic candidate isolates with ability to compete with the luminous bacteria has been done in mangrove area of Merak Belantung, Kalianda, Lampung Province, Indonesia, and also from shrimp intestine, raised in the tank of research facility. Nine bacteria isolates were obtained from this exploration, and based on the references, 4 isolates had the potential to compete Vibrio harveyi. Based on the 16S rRNA sequencing result, those 4 isolates were Bacillus cereus, B. aryabhattai, Weisella paramesenteroides, and Pediococcus pentosaceus. Further analysis of in vitro test using agar-well diffusion inhibition method and in vivo test showed that among those 4 isolates, only P. pentosaceus had strong antibacterial activity against V. harveyi and could be used as probiotic in shrimp rearing with optimal dose at 5-10 µL L-1.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"41 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135786540","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of bovine Eimeria species pathogenic using PCR ITS-1 in Indonesia 印度尼西亚牛艾美耳球虫致病性的PCR ITS-1鉴定
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.13057/biodiv/d240850
RADEN WISNU NURCAHYO, FITRINE EKAWASTI, LINTANG WINANTYA FIRDAUSY, VIKA ICHSANIA NINDITYA, MUKH FAJAR NASRULLOH, DYAH AYU KURNIAWATI, FATHUR ROHMAN HARYADI, JOKO PRASTOWO, DWI PRIYOWIDODO
Abstract. Nurcahyo RW, Ekaswasti F, Firdausy LW, Ninditya VI, Nasrulloh MF, Kurniawati DA, Haryadi FR, Prastowo J, Priyowidodo D. 2023. Identification of bovine Eimeria species pathogenic using PCR ITS-1 in Indonesia. Biodiversitas 24: 4684-4689. Bovine eimeriosis is one of Indonesia's cattle's most significant health issues caused by the intestinal protozoan parasite Eimeria spp. Eimeria spp., E. zuernii, E. alabamensis, E. aburnensis, and E. bovis are recognized as most pathogenic since they cause clinical symptoms. This study aimed to identify pathogenic Eimeria spp. and explore their evolutionary relationships using the molecular marker, the internal transcribed spacer-1 (ITS-1). A total of 171 fecal samples were collected from the provinces of Banten, Lampung, and West Java, and 43 (25.1%) were infected with oocysts of Eimeria spp. by microscopic examination. The positive samples were further confirmed for different Eimeria species by amplifying and sequencing the ITS-1 gene. After editing and alignment, the sequences were considered for analyses, and the phylogenetic analysis confirmed four species of Eimeria such as E. bovis 39 (22.8%), E. zuernii 23 (13.5%), E. alabamensis 7 (4.09%), and E. aburnensis 25 (14.6%). In this study, several Eimeria species were related to overseas species; therefore, additional risk analysis is needed to control the spread of bovine eimeriosis. It is possible to learn important details regarding the ecology and population genetics of Eimeria spp. by employing sequencing and phylogenetic analysis to categorize all positive samples of the eimeriosis as pathogenic Eimeria spp.
摘要Nurcahyo RW, Ekaswasti F, firday LW, Ninditya VI, Nasrulloh MF, Kurniawati DA, Haryadi FR, Prastowo J, Priyowidodo D. 2023。印度尼西亚牛艾美耳球虫致病性的PCR ITS-1鉴定。生物多样性24:4684-4689。牛艾美耳虫病是由肠道原生动物寄生虫艾美耳虫引起的印度尼西亚牛最严重的健康问题之一。艾美耳虫、苏氏艾美耳虫、阿拉巴马艾美耳虫、阿伯恩艾美耳虫和牛艾美耳虫被认为是最具致病性的,因为它们会引起临床症状。本研究旨在利用分子标记ITS-1鉴定致病性艾美耳球虫,并探讨其进化关系。在万丹省、楠榜省和西爪哇省共采集粪便标本171份,显微镜检查发现艾美耳球虫卵囊感染43份(25.1%)。通过对ITS-1基因的扩增和测序,进一步确认了不同艾美耳球虫种类的阳性样本。对序列进行编辑比对后,系统发育分析确认了4种艾美耳虫,分别为E. bovis 39(22.8%)、E. zuernii 23(13.5%)、E. alabamensis 7(4.09%)和E. aburnensis 25(14.6%)。本研究中有几个艾美耳球虫种与海外种有亲缘关系;因此,需要进行额外的风险分析以控制牛艾美拉虫病的传播。通过测序和系统发育分析,将所有阳性标本归类为致病性艾美耳亚种,可以了解艾美耳亚种生态学和群体遗传学的重要细节。
{"title":"Identification of bovine Eimeria species pathogenic using PCR ITS-1 in Indonesia","authors":"RADEN WISNU NURCAHYO, FITRINE EKAWASTI, LINTANG WINANTYA FIRDAUSY, VIKA ICHSANIA NINDITYA, MUKH FAJAR NASRULLOH, DYAH AYU KURNIAWATI, FATHUR ROHMAN HARYADI, JOKO PRASTOWO, DWI PRIYOWIDODO","doi":"10.13057/biodiv/d240850","DOIUrl":"https://doi.org/10.13057/biodiv/d240850","url":null,"abstract":"Abstract. Nurcahyo RW, Ekaswasti F, Firdausy LW, Ninditya VI, Nasrulloh MF, Kurniawati DA, Haryadi FR, Prastowo J, Priyowidodo D. 2023. Identification of bovine Eimeria species pathogenic using PCR ITS-1 in Indonesia. Biodiversitas 24: 4684-4689. Bovine eimeriosis is one of Indonesia's cattle's most significant health issues caused by the intestinal protozoan parasite Eimeria spp. Eimeria spp., E. zuernii, E. alabamensis, E. aburnensis, and E. bovis are recognized as most pathogenic since they cause clinical symptoms. This study aimed to identify pathogenic Eimeria spp. and explore their evolutionary relationships using the molecular marker, the internal transcribed spacer-1 (ITS-1). A total of 171 fecal samples were collected from the provinces of Banten, Lampung, and West Java, and 43 (25.1%) were infected with oocysts of Eimeria spp. by microscopic examination. The positive samples were further confirmed for different Eimeria species by amplifying and sequencing the ITS-1 gene. After editing and alignment, the sequences were considered for analyses, and the phylogenetic analysis confirmed four species of Eimeria such as E. bovis 39 (22.8%), E. zuernii 23 (13.5%), E. alabamensis 7 (4.09%), and E. aburnensis 25 (14.6%). In this study, several Eimeria species were related to overseas species; therefore, additional risk analysis is needed to control the spread of bovine eimeriosis. It is possible to learn important details regarding the ecology and population genetics of Eimeria spp. by employing sequencing and phylogenetic analysis to categorize all positive samples of the eimeriosis as pathogenic Eimeria spp.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"33 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135786703","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Population and spatial ecology of horseshoe crabs (Limulidae) in a nursery ground at Pulau Bedukang, Brunei Bay, Borneo 婆罗洲汶莱湾贝都康岛苗圃马蹄蟹种群及空间生态
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.13057/biodiv/d240829
AHMAD FAHMI ROZAINI, KEVIN H. LAURIE, DAVID J. MARSHALL
Abstract. Rozaini AF, Laurie KH, Marshall DJ. 2023. Population and spatial ecology of horseshoe crabs (Limulidae) in a nursery ground at Pulau Bedukang, Brunei Bay, Borneo. Biodiversitas 24: 4485-4492. Suitable nursery habitat to support populations of juvenile horseshoe crabs is becoming threatened globally. There are currently no formal studies on juvenile populations of the horseshoe crabs (Limulidae) for Brunei Darussalam (Brunei, Borneo). We investigated body size structure, population cohort and ecological distribution of juvenile horseshoe crabs associated with a mudflat on Pulau Bedukang, in Brunei Bay. Seventy juveniles were retrieved during four sampling days covering two seasons and four study sites. Carcinoscorpius rotundicauda and Tachypleus gigas were common, whereas only two individuals of Tachypleus tridentatus were found. Carapace width (size) was similar in the common species and there was no difference in juvenile size between the seasons and study sites. Body weight to carapace width relationships showed that the species grew at similar rates, although C. rotundicauda developed faster, producing 14 compared to the eight pre-migration mudflat instars produced by T. gigas. Species densities were similar, and there was no spatial separation of species or juvenile size across the mudflat or in relation to the mangrove forest edge. Nearest-neighbor (NN) analysis showed that individual crabs were generally dispersed. Their mudflat cohabitation suggests physiological and behavioral plesiomorphies for common optimal developmental salinity and temperature conditions. This study provides baseline information for comparison with other regional studies and for local conservation planning.
摘要Rozaini AF, Laurie KH, Marshall DJ。2023. 婆罗洲汶莱湾贝都康岛苗圃马蹄蟹种群及空间生态。生物多样性,24:4485-4492。在全球范围内,适宜的马蹄蟹幼仔栖息地正受到威胁。目前没有对文莱达鲁萨兰国(文莱,婆罗洲)马蹄蟹(Limulidae)幼蟹种群的正式研究。研究了汶莱湾贝都康岛泥滩幼马蹄蟹的体型结构、种群群和生态分布。在两个季节和四个研究地点的四个采样天内捕获了70只幼鱼。圆尾巨蟹和大尾巨蟹是常见的,而三齿巨蟹只发现了2只。常见物种的甲壳宽度(大小)相似,不同季节和研究地点的幼鱼大小没有差异。体重与甲壳宽度的关系表明,该物种以相似的速度生长,尽管圆尾螺发育得更快,产生14个,而T. gigas则产生8个。物种密度基本一致,物种和幼鱼大小在整个泥滩和红树林边缘没有空间分异。最近邻(NN)分析表明,蟹的个体分布较为分散。它们在泥滩上的同居表明,在共同的最佳发育盐度和温度条件下,它们具有生理和行为上的同形性。这项研究提供了基线资料,以便与其他区域研究进行比较,并为当地的保护规划提供参考。
{"title":"Population and spatial ecology of horseshoe crabs (Limulidae) in a nursery ground at Pulau Bedukang, Brunei Bay, Borneo","authors":"AHMAD FAHMI ROZAINI, KEVIN H. LAURIE, DAVID J. MARSHALL","doi":"10.13057/biodiv/d240829","DOIUrl":"https://doi.org/10.13057/biodiv/d240829","url":null,"abstract":"Abstract. Rozaini AF, Laurie KH, Marshall DJ. 2023. Population and spatial ecology of horseshoe crabs (Limulidae) in a nursery ground at Pulau Bedukang, Brunei Bay, Borneo. Biodiversitas 24: 4485-4492. Suitable nursery habitat to support populations of juvenile horseshoe crabs is becoming threatened globally. There are currently no formal studies on juvenile populations of the horseshoe crabs (Limulidae) for Brunei Darussalam (Brunei, Borneo). We investigated body size structure, population cohort and ecological distribution of juvenile horseshoe crabs associated with a mudflat on Pulau Bedukang, in Brunei Bay. Seventy juveniles were retrieved during four sampling days covering two seasons and four study sites. Carcinoscorpius rotundicauda and Tachypleus gigas were common, whereas only two individuals of Tachypleus tridentatus were found. Carapace width (size) was similar in the common species and there was no difference in juvenile size between the seasons and study sites. Body weight to carapace width relationships showed that the species grew at similar rates, although C. rotundicauda developed faster, producing 14 compared to the eight pre-migration mudflat instars produced by T. gigas. Species densities were similar, and there was no spatial separation of species or juvenile size across the mudflat or in relation to the mangrove forest edge. Nearest-neighbor (NN) analysis showed that individual crabs were generally dispersed. Their mudflat cohabitation suggests physiological and behavioral plesiomorphies for common optimal developmental salinity and temperature conditions. This study provides baseline information for comparison with other regional studies and for local conservation planning.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"46 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135786972","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mangrove diversity and its relationships with environmental conditions in Kuala Bubon Village, West Aceh, Indonesia 印度尼西亚西亚齐瓜拉布邦村红树林多样性及其与环境条件的关系
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.13057/biodiv/d240864
WINTAH WINTAH, KISWANTO KISWANTO, ENDANG HILMI, MOH. HUSEIN SASTRANEGARA
Abstract. Wintah, Kiswanto, Hilmi E, Sastranegara MH. 2023. Mangrove diversity and its relationships with environmental conditions in Kuala Bubon Village, West Aceh, Indonesia. Biodiversitas 24: 4599-4605. Mangrove ecosystem plays various ecological and socio-economic roles. Indonesia has the largest extent of mangrove forest one of which is located in West Aceh Regency, Aceh Province. The aim of this study was to assess the diversity and structure of mangrove forest in Kuala Bubon Village, West Aceh, and to analyze the relationships between the existence of mangrove species and the environmental conditions. Field survey was conducted from May to August 2022 using plot sampling method on three stations representing various habitat characteristics. Vegetation sampling using a 10 x 10 m2 plot as well as measurement on physical parameters (pH, salinity, and temperature) and chemical parameters (sediment texture and organic carbon content) were conducted. The relationship between the presence of mangrove species and the environmental parameters was analyzed using Principal Component Analysis (PCA). The result of vegetation sampling recorded 6 mangrove species, i.e., Rhizophora stylosa Griff, Sonneratia alba Sm, Avicennia marina (Blume), c, and Sonneratia caseolaris (L) Engl. This study revealed that the presence of Rhizophora stylosa Griff was related to the conditions of the clay substrate, pH and temperature values. Meanwhile, the existence of Rhizophora apiculata Blume, Rhizophora mucronata Lamk, Sonneratia alba Sm, Sonneratia caseolaris (L) Engl, and Avicennia marina (Blume) was related to the conditions of the silt substrate, diameter and salinity. Based on the results of relationship analysis, silt substrate and salinity have a correlation to maintain the mangrove ecosystem.
摘要Wintah, Kiswanto, Hilmi E, Sastranegara MH. 2023。印度尼西亚西亚齐瓜拉布邦村红树林多样性及其与环境条件的关系。生物多样性学报(自然科学版);红树林生态系统具有多种生态和社会经济作用。印度尼西亚拥有最大范围的红树林,其中一个位于亚齐省的西亚齐摄政。本研究的目的是评估西亚齐省Kuala buon村红树林的多样性和结构,并分析红树林物种的存在与环境条件的关系。2022年5月至8月,采用样地抽样法在代表不同生境特征的3个站点进行了实地调查。采用10 × 10 m2样地进行植被采样,并测量物理参数(pH、盐度和温度)和化学参数(沉积物质地和有机碳含量)。采用主成分分析(PCA)分析了红树林物种存在与环境参数的关系。植被取样结果记录到6种红树,分别是:Rhizophora stylosa Griff、Sonneratia alba Sm、Avicennia marina (Blume), c和Sonneratia caseolaris (L) Engl。研究表明,茎尖根霉的存在与土壤基质条件、pH和温度有关。同时,尖根藻(Rhizophora apiculata Blume)、粗根藻(Rhizophora mucronata Lamk)、白海桑(sonnerati caseolaris (L) Engl)和滨海海桑(Avicennia marina, Blume)的存在与淤泥基质、直径和盐度条件有关。关系分析结果表明,淤泥基质与盐度对红树林生态系统的维持具有相关性。
{"title":"Mangrove diversity and its relationships with environmental conditions in Kuala Bubon Village, West Aceh, Indonesia","authors":"WINTAH WINTAH, KISWANTO KISWANTO, ENDANG HILMI, MOH. HUSEIN SASTRANEGARA","doi":"10.13057/biodiv/d240864","DOIUrl":"https://doi.org/10.13057/biodiv/d240864","url":null,"abstract":"Abstract. Wintah, Kiswanto, Hilmi E, Sastranegara MH. 2023. Mangrove diversity and its relationships with environmental conditions in Kuala Bubon Village, West Aceh, Indonesia. Biodiversitas 24: 4599-4605. Mangrove ecosystem plays various ecological and socio-economic roles. Indonesia has the largest extent of mangrove forest one of which is located in West Aceh Regency, Aceh Province. The aim of this study was to assess the diversity and structure of mangrove forest in Kuala Bubon Village, West Aceh, and to analyze the relationships between the existence of mangrove species and the environmental conditions. Field survey was conducted from May to August 2022 using plot sampling method on three stations representing various habitat characteristics. Vegetation sampling using a 10 x 10 m2 plot as well as measurement on physical parameters (pH, salinity, and temperature) and chemical parameters (sediment texture and organic carbon content) were conducted. The relationship between the presence of mangrove species and the environmental parameters was analyzed using Principal Component Analysis (PCA). The result of vegetation sampling recorded 6 mangrove species, i.e., Rhizophora stylosa Griff, Sonneratia alba Sm, Avicennia marina (Blume), c, and Sonneratia caseolaris (L) Engl. This study revealed that the presence of Rhizophora stylosa Griff was related to the conditions of the clay substrate, pH and temperature values. Meanwhile, the existence of Rhizophora apiculata Blume, Rhizophora mucronata Lamk, Sonneratia alba Sm, Sonneratia caseolaris (L) Engl, and Avicennia marina (Blume) was related to the conditions of the silt substrate, diameter and salinity. Based on the results of relationship analysis, silt substrate and salinity have a correlation to maintain the mangrove ecosystem.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"76 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135786709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Microalgal diversity assessment of Laguna Lake (Philippines) tributaries using Next-Generation Sequencing for water quality 利用新一代测序技术评估菲律宾拉古纳湖支流的微藻多样性
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.13057/biodiv/d240845
JOY ANN SANTOS, JULIUS AARON MEJIA, M.A. JOWINA GALARION, PIERANGELI VITAL
Abstract. Santos JA, Mejia JA, Galarion MAJ, Vital P. 2023. Microalgal diversity assessment of Laguna Lake (Philippines) tributaries using Next-Generation Sequencing for water quality. Biodiversitas 24: 4636-4644. The species composition and density of microalgae have been successfully used as bioindicators of water quality as they respond quickly to any change in the water chemistry brought about by pollution. Laguna Lake in the Philippines, one of the country's most important hotspots for aquaculture, continues to be threatened by eutrophication, yet its microalgal profile has been understudied. The presence of microalgae, especially those identified to become causative agents of harmful algal blooms in lakes, can cause corresponding health effects in humans and the environment. This study determined microalgal diversity in samples from tributaries of Laguna Lake, Philippines, through 18S rRNA metagenomic sequencing or Next-Generation Sequencing (NGS). Out of the five sampling sites, only two sites passed the NGS quality control pipeline. Chlorella M.Beijerinck, dominated the eukaryotic microbial population in the Alabang-Cupang River sample, which is 95% of the total population. While in the Biñan River sample, relevant species found were Cyclotella scaldensis Muylaert & Sabbe, Teleaulax acuta (Butcher) Hill, Cryptomonas curvata Ehrenb., and Peridiniopsis penardii (Lemmerm.) Bourr. This is the first study to use NGS to detect microalgae in Laguna Lake and warrants further elucidation of the microalgal population through increased sampling efforts in other recreational and livelihood hotspots. Furthermore, the study results open the importance of implementing new schemes for water quality assessments focused on molecular-based approaches.
摘要张建军,张建军,张建军,张建军。利用新一代测序技术评估菲律宾拉古纳湖支流的微藻多样性。生物多样性24:4636-4644。微藻的种类组成和密度对污染引起的水化学变化反应迅速,已被成功地用作水质的生物指标。菲律宾的拉古纳湖是该国最重要的水产养殖热点之一,它继续受到富营养化的威胁,但对其微藻的研究还不够充分。微藻的存在,特别是那些被确定为湖泊中有害藻华的病原体的微藻的存在,可对人类和环境造成相应的健康影响。本研究通过18S rRNA宏基因组测序或新一代测序(NGS)测定了菲律宾拉古纳湖支流样品中的微藻多样性。在5个采样点中,只有2个站点通过了NGS质量控制管道。小球藻(Chlorella M.Beijerinck)在阿拉邦-库庄河样品中占主导地位,占总数的95%。而在Biñan河样本中,发现的相关物种为黄绿Cyclotella scaldensisSabbe, acuta (Butcher) Hill Teleaulax, Cryptomonas curvata Ehrenb。和penardii Peridiniopsis (Lemmerm.)Bourr。这是第一个使用NGS检测拉古纳湖微藻的研究,需要通过在其他娱乐和生计热点增加采样工作来进一步阐明微藻种群。此外,研究结果揭示了实施以分子为基础的方法为重点的水质评估新方案的重要性。
{"title":"Microalgal diversity assessment of Laguna Lake (Philippines) tributaries using Next-Generation Sequencing for water quality","authors":"JOY ANN SANTOS, JULIUS AARON MEJIA, M.A. JOWINA GALARION, PIERANGELI VITAL","doi":"10.13057/biodiv/d240845","DOIUrl":"https://doi.org/10.13057/biodiv/d240845","url":null,"abstract":"Abstract. Santos JA, Mejia JA, Galarion MAJ, Vital P. 2023. Microalgal diversity assessment of Laguna Lake (Philippines) tributaries using Next-Generation Sequencing for water quality. Biodiversitas 24: 4636-4644. The species composition and density of microalgae have been successfully used as bioindicators of water quality as they respond quickly to any change in the water chemistry brought about by pollution. Laguna Lake in the Philippines, one of the country's most important hotspots for aquaculture, continues to be threatened by eutrophication, yet its microalgal profile has been understudied. The presence of microalgae, especially those identified to become causative agents of harmful algal blooms in lakes, can cause corresponding health effects in humans and the environment. This study determined microalgal diversity in samples from tributaries of Laguna Lake, Philippines, through 18S rRNA metagenomic sequencing or Next-Generation Sequencing (NGS). Out of the five sampling sites, only two sites passed the NGS quality control pipeline. Chlorella M.Beijerinck, dominated the eukaryotic microbial population in the Alabang-Cupang River sample, which is 95% of the total population. While in the Biñan River sample, relevant species found were Cyclotella scaldensis Muylaert & Sabbe, Teleaulax acuta (Butcher) Hill, Cryptomonas curvata Ehrenb., and Peridiniopsis penardii (Lemmerm.) Bourr. This is the first study to use NGS to detect microalgae in Laguna Lake and warrants further elucidation of the microalgal population through increased sampling efforts in other recreational and livelihood hotspots. Furthermore, the study results open the importance of implementing new schemes for water quality assessments focused on molecular-based approaches.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"15 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134989978","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
The current state of the cenopopulations of Adonis tianschanica (Adolf) Lipsch. (Ranunculaceae) in Southeast Kazakhstan 阿道夫利普希人口的现状。产于哈萨克斯坦东南部的毛茛科植物
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.13057/biodiv/d240817
KANAT KULYMBET, NASHTAY MUKHITDINOV, SERIK KUBENTAYEV, KURALAY TYNYBAYEVA, ASEM TASTANBEKOVA, MERUYERT KURMANBAYEVA, YUSUFJON GAFFOROV, RAUSHAN KAPARBAY, MOLDIR ZHUMAGUL
Abstract. Kulymbet K, Mukhitdinov N, Kubentayev S, Tynybayeva K, Tastanbekova A, Kurmanbayeva M, Gafforov Y, Kaparbay R, Zhumagul M. 2023. The current state of the cenopopulations of Adonis tianschanica (Adolf) Lipsch. (Ranunculaceae) in Southeast Kazakhstan. Biodiversitas 24: 4359-4372. Adonis tianschanica (Adolf) Lipsch. is a rare, sub-endemic species growing in the Tien Shan mountains with declining numbers, making it listed in the Red Book of Kazakhstan. The aim of the study is to investigate the distribution and abundance of A. tianschanica cenopopopulations (CP) in its natural habitats in southeastern Kazakhstan as well as assess soil characteristics, biological and arealogical features, including the ontogenetic structure of cenopopopulations. Five cenopopulations (CP) of A. tianschanica were identified, namely two CPs in Ketmen Ridge (Kegen Pass), two CPs in Dzungarian Alatau (Tekeli Gorge) and one CP in Terskey Alatau (Saryzhaz). Vegetation data were collected using the traditional methods of field geobotanical studies based on the ecological-physiognomic approach.Plant communities having dominant species from a single ecobiomorph and ecologically related species groups.We complemented the population analysis with a soil properties map compiled from existing cartographic and available literature. The results of this study indicated the low number of A. tianschanica individuals in all CPs, which is likely due to the biological characteristics of the species (i.e. low seed production and seedling recruitment and the lack of vegetative regeneration) as well as environmental factors, and anthropogenic impact, mainly grazing with. We found that the total number of individuals of A. tianschanica in the five cenopopulations was 106 individuals. The average density of the species varied from 1.3 to 3.1 plants/m2 with CP2 being the highest and CP5 the lowest. The five cenopopulations were classified based on the absolute maxima of ontogenetic groups. There were two maxima in the age composition of individuals in CPs 3 and 4: the first (18.8-42.1%) was a group of vegetative plants (v), and the second (21.1-50.0%) was a group of young generative plants (g1). The natural state of the habitat of this cenopopulation can be explained as more favorable than others. In CP2, the absolute maximum corresponded to vegetative plants group (v) (37.0%). In CP5, young generative individuals (g1) and mature generative (g2) predominated (from 30.8% to 38.4%). In terms of age composition, the state of A. tianschanica cenopopulations is considered relatively satisfactory but demonstrated a low level of abundance. It has been established that the state of the species populations in the studied regions is affected by soil conditions, changes in climatic conditions and anthropogenic impact.
摘要库本塔耶夫S, Tynybayeva K, Tastanbekova A, Kurmanbayeva M, Gafforov Y, Kaparbay R, Zhumagul M. 2023。阿道夫利普希人口的现状。产于哈萨克斯坦东南部的毛茛科植物。生物多样性24:4359-4372。阿道夫·利普希。是一种稀有的亚特有种,生长在天山山脉,数量不断减少,已被列入哈萨克斯坦红皮书。本研究的目的是调查哈萨克斯坦东南部天山冷杉(A. tianschanica)自然生境中天山冷杉(A. tianschanica)种群的分布和丰度,并评价其土壤特征、生物学和地学特征,包括种群的个体发生结构。共鉴定出5个天山桫椤种群,分别为Ketmen Ridge (Kegen Pass) 2个、Dzungarian Alatau (Tekeli Gorge) 2个和Terskey Alatau (Saryzhaz) 1个。植被数据的采集采用传统的基于生态地貌方法的野外地学研究方法。具有来自单一生态形态的优势物种和生态上相关的物种群的植物群落。我们用从现有制图和可用文献中编制的土壤属性图来补充种群分析。研究结果表明,天山银杏树个体数量较少,这可能与该物种的生物学特性(种子产量和幼苗补充量低,缺乏营养更新)以及环境因素和人为影响(主要是放牧)有关。结果表明,天山穿山甲在5个种群中的总个体数为106个。平均密度为1.3 ~ 3.1株/m2, CP2最高,CP5最低。根据个体发生类群的绝对最大值对5个种群进行分类。cp 3和cp 4的个体年龄构成有两个最大值:第一个最大值(18.8 ~ 42.1%)为营养植物组(v),第二个最大值(21.1 ~ 50.0%)为幼生殖植物组(g1)。这个人口的自然栖息地状况可以解释为比其他人口更有利。在CP2中,绝对最大值对应于营养植物组(v)(37.0%)。在CP5中,年轻生殖个体(g1)和成熟生殖个体(g2)占主导地位(30.8% ~ 38.4%)。在年龄组成方面,天山银针种群的状态相对令人满意,但丰度较低。研究表明,研究区域的物种种群状况受到土壤条件、气候条件变化和人为影响的影响。
{"title":"The current state of the cenopopulations of Adonis tianschanica (Adolf) Lipsch. (Ranunculaceae) in Southeast Kazakhstan","authors":"KANAT KULYMBET, NASHTAY MUKHITDINOV, SERIK KUBENTAYEV, KURALAY TYNYBAYEVA, ASEM TASTANBEKOVA, MERUYERT KURMANBAYEVA, YUSUFJON GAFFOROV, RAUSHAN KAPARBAY, MOLDIR ZHUMAGUL","doi":"10.13057/biodiv/d240817","DOIUrl":"https://doi.org/10.13057/biodiv/d240817","url":null,"abstract":"Abstract. Kulymbet K, Mukhitdinov N, Kubentayev S, Tynybayeva K, Tastanbekova A, Kurmanbayeva M, Gafforov Y, Kaparbay R, Zhumagul M. 2023. The current state of the cenopopulations of Adonis tianschanica (Adolf) Lipsch. (Ranunculaceae) in Southeast Kazakhstan. Biodiversitas 24: 4359-4372. Adonis tianschanica (Adolf) Lipsch. is a rare, sub-endemic species growing in the Tien Shan mountains with declining numbers, making it listed in the Red Book of Kazakhstan. The aim of the study is to investigate the distribution and abundance of A. tianschanica cenopopopulations (CP) in its natural habitats in southeastern Kazakhstan as well as assess soil characteristics, biological and arealogical features, including the ontogenetic structure of cenopopopulations. Five cenopopulations (CP) of A. tianschanica were identified, namely two CPs in Ketmen Ridge (Kegen Pass), two CPs in Dzungarian Alatau (Tekeli Gorge) and one CP in Terskey Alatau (Saryzhaz). Vegetation data were collected using the traditional methods of field geobotanical studies based on the ecological-physiognomic approach.Plant communities having dominant species from a single ecobiomorph and ecologically related species groups.We complemented the population analysis with a soil properties map compiled from existing cartographic and available literature. The results of this study indicated the low number of A. tianschanica individuals in all CPs, which is likely due to the biological characteristics of the species (i.e. low seed production and seedling recruitment and the lack of vegetative regeneration) as well as environmental factors, and anthropogenic impact, mainly grazing with. We found that the total number of individuals of A. tianschanica in the five cenopopulations was 106 individuals. The average density of the species varied from 1.3 to 3.1 plants/m2 with CP2 being the highest and CP5 the lowest. The five cenopopulations were classified based on the absolute maxima of ontogenetic groups. There were two maxima in the age composition of individuals in CPs 3 and 4: the first (18.8-42.1%) was a group of vegetative plants (v), and the second (21.1-50.0%) was a group of young generative plants (g1). The natural state of the habitat of this cenopopulation can be explained as more favorable than others. In CP2, the absolute maximum corresponded to vegetative plants group (v) (37.0%). In CP5, young generative individuals (g1) and mature generative (g2) predominated (from 30.8% to 38.4%). In terms of age composition, the state of A. tianschanica cenopopulations is considered relatively satisfactory but demonstrated a low level of abundance. It has been established that the state of the species populations in the studied regions is affected by soil conditions, changes in climatic conditions and anthropogenic impact.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"28 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135786843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Potential of carbon sequestration enhancement through intensive silvicultural techniques using Shorea leprosula plantation in Central Kalimantan, Indonesia 利用印度尼西亚加里曼丹中部麻风Shorea人工林集约造林技术提高碳固存的潜力
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.13057/biodiv/d240852
M. ISKANDAR, ISKANDAR ZULKARNAEN SIREGAR, HARUNI KRISNAWATI
Abstract. Iskandar M, Siregar IZ, Krisnawati H. 2023. Potential of carbon sequestration enhancement through intensive silvicultural techniques using Shorea leprosula plantation in Central Kalimantan, Indonesia. Biodiversitas 24: 4699-4713. Various sectors are involved in achieving Indonesia’s Enhanced Nationally Determined Contribution (NDC), including Forestry and Other Land Uses (FOLU) sector. Sustainable Forest Management (SFM) implementation by forest concessionaires (PBPHs) enormously contributes to land-based mitigation activities, primarily at the local level. One of the SFM activities is forest enrichment with Intensive Silvicultural (SILIN) technique using Shorea leprosula Miq. to enhance carbon stock and sequestration. This study was conducted in PT Sarmiento Parakantja Timber (PT Sarpatim) in Central Kalimantan (Indonesia) and used the measurement data from 32 purposive sampling plots. Each plot was 40m × 40m in size, constructed under three different SILIN patterns (conventional strip, effective strip, and gap) as well as natural forest stands. This study found that SILIN gap pattern had higher carbon stock and sequestration potential, compared to the natural forest (reference) stands, and reached a net sink condition after 30 years. For the stands of SILIN conventional and effective strip patterns, the carbon stocks were lower than the reference stand, even when the vegetation aged 30 years. PBPHs applying SILIN technique as part of the SFM and the mitigation actions demonstrate an enhanced carbon stock and sequestration. This effort supports Indonesia’s Enhanced NDC target and FOLU Net Sink 2030.
摘要Iskandar M, Siregar IZ, Krisnawati H. 2023。利用印度尼西亚加里曼丹中部麻风Shorea人工林集约造林技术提高碳固存的潜力。生物多样性,24:4699-4713。各个部门都参与实现印度尼西亚的国家自主贡献(NDC),包括林业和其他土地利用部门。森林特许经营者实施可持续森林管理极大地促进了主要在地方一级的陆基缓解活动。森林资源管理活动之一是利用麻风树进行集约化造林(SILIN)技术来丰富森林。提高碳储量和固碳能力。本研究在印度尼西亚加里曼丹中部的PT Sarmiento Parakantja Timber (PT Sarpatim)进行,并使用了32个有目的采样样地的测量数据。每个地块的面积为40m × 40m,在三种不同的SILIN模式(常规带状、有效带状和间隙)和天然林林分下构建。研究发现,与天然林(参考)林分相比,SILIN林隙格局具有更高的碳储量和固碳潜力,30年后达到净汇状态。常规带状和有效带状林分的碳储量即使在植被老化30年时也低于参考林分。将SILIN技术作为可持续森林管理和缓解行动的一部分加以应用的pbph表明,碳储量和固碳能力得到了增强。这一努力支持了印度尼西亚加强国家自主贡献目标和2030年FOLU净汇。
{"title":"Potential of carbon sequestration enhancement through intensive silvicultural techniques using Shorea leprosula plantation in Central Kalimantan, Indonesia","authors":"M. ISKANDAR, ISKANDAR ZULKARNAEN SIREGAR, HARUNI KRISNAWATI","doi":"10.13057/biodiv/d240852","DOIUrl":"https://doi.org/10.13057/biodiv/d240852","url":null,"abstract":"Abstract. Iskandar M, Siregar IZ, Krisnawati H. 2023. Potential of carbon sequestration enhancement through intensive silvicultural techniques using Shorea leprosula plantation in Central Kalimantan, Indonesia. Biodiversitas 24: 4699-4713. Various sectors are involved in achieving Indonesia’s Enhanced Nationally Determined Contribution (NDC), including Forestry and Other Land Uses (FOLU) sector. Sustainable Forest Management (SFM) implementation by forest concessionaires (PBPHs) enormously contributes to land-based mitigation activities, primarily at the local level. One of the SFM activities is forest enrichment with Intensive Silvicultural (SILIN) technique using Shorea leprosula Miq. to enhance carbon stock and sequestration. This study was conducted in PT Sarmiento Parakantja Timber (PT Sarpatim) in Central Kalimantan (Indonesia) and used the measurement data from 32 purposive sampling plots. Each plot was 40m × 40m in size, constructed under three different SILIN patterns (conventional strip, effective strip, and gap) as well as natural forest stands. This study found that SILIN gap pattern had higher carbon stock and sequestration potential, compared to the natural forest (reference) stands, and reached a net sink condition after 30 years. For the stands of SILIN conventional and effective strip patterns, the carbon stocks were lower than the reference stand, even when the vegetation aged 30 years. PBPHs applying SILIN technique as part of the SFM and the mitigation actions demonstrate an enhanced carbon stock and sequestration. This effort supports Indonesia’s Enhanced NDC target and FOLU Net Sink 2030.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"9 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135786702","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Beneficial interaction between rice stunt virus and its insect vector Nilaparvata lugens Stal based on life table 基于生命表的水稻矮缩病毒及其昆虫载体褐飞虱的有益互作
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.13057/biodiv/d240851
LISTIHANI LISTIHANI, I GUSTI AYU DIAH YUNITI, PUTU EKA PASMIDI ARIATI, NI PUTU PANDAWANI, DEWA GEDE WIRYANGGA SELANGGA, I GEDE RAI MAYA TEMAJA, GUSTI NGURAH ALIT SUSANTA WIRYA, I PUTU SUDIARTA
Abstract. Listihani L, Yuniti IGAD, Ariati PEP, Pandawani NP, Selangga DGW, Temaja IGRM, Wirya GNAS, Sudiarta IP. 2023. Beneficial interaction between rice stunt virus and its insect vector Nilaparvata lugens Stal based on life table. Biodiversitas 24: 4690-4698. The brown planthopper (Nilaparvata lugens) causes direct and indirect damage as a stunting virus vector in rice. Insect vectors and viruses are closely related with respect to disease transmission to host plants. Thus, this research aimed to determine the specific relationship between a virus and its insect vector on the biology and demography statistics of viruliferous brown planthopper (BPH). Research method included the propagation of N. lugens and stunt virus inoculum, the observation of cohort, stadia duration and egg survival rates, imago life span, and N. lugens life table. The BPH life table was arranged with the jackknife method for two treatments: plants infected by stunt virus and healthy plants. The research result showed that plants infected by stunt virus can shorten the BPH nymphal development stage from instar 2 to instar 5, life cycle, preoviposition period, and double time. Plants infected by stunt virus did not influence the BPH hatching pattern but influenced the total number of hatching eggs. The next BPH generation of stunt virus inflected plants increased 29.51 times more from the previous generation, while on healthy plants, the next BPH generation only increased 27.51 times. Virus-infected plants generally appeared to be superior quality hosts for vectors compared to uninfected plants, thus enhancing vector life table and virus spread.
摘要Listihani L, Yuniti IGAD, Ariati PEP, Pandawani NP, Selangga DGW, Temaja IGRM, Wirya GNAS, Sudiarta IP。2023. 基于生命表的水稻矮缩病毒及其昆虫载体褐飞虱的有益互作生物多样性24:4690-4698。褐飞虱(Nilaparvata lugens)作为水稻发育迟缓病毒载体,对水稻造成直接和间接危害。昆虫媒介和病毒在向寄主植物传播疾病方面关系密切。因此,本研究旨在确定病毒与病媒昆虫在褐飞虱(BPH)生物学和人口学统计上的具体关系。研究方法包括接种褐飞虱和矮病毒进行繁殖,观察群体、潜伏期、卵存活率、影像寿命和褐飞虱生命表。采用折刀法对僵病毒感染植株和健康植株的BPH生命表进行排列。研究结果表明,植物被矮病毒感染后,BPH若虫发育阶段从2龄缩短至5龄,生活期缩短,产卵前期缩短,双倍期缩短。植物被矮病毒侵染后,对BPH的孵化模式没有影响,但对孵化卵总数有影响。矮病毒感染植株的下一代BPH比上一代增加29.51倍,而健康植株的下一代BPH仅增加27.51倍。与未感染的植物相比,病毒感染的植物通常表现为媒介的优质宿主,从而提高了媒介的生命表和病毒的传播。
{"title":"Beneficial interaction between rice stunt virus and its insect vector Nilaparvata lugens Stal based on life table","authors":"LISTIHANI LISTIHANI, I GUSTI AYU DIAH YUNITI, PUTU EKA PASMIDI ARIATI, NI PUTU PANDAWANI, DEWA GEDE WIRYANGGA SELANGGA, I GEDE RAI MAYA TEMAJA, GUSTI NGURAH ALIT SUSANTA WIRYA, I PUTU SUDIARTA","doi":"10.13057/biodiv/d240851","DOIUrl":"https://doi.org/10.13057/biodiv/d240851","url":null,"abstract":"Abstract. Listihani L, Yuniti IGAD, Ariati PEP, Pandawani NP, Selangga DGW, Temaja IGRM, Wirya GNAS, Sudiarta IP. 2023. Beneficial interaction between rice stunt virus and its insect vector Nilaparvata lugens Stal based on life table. Biodiversitas 24: 4690-4698. The brown planthopper (Nilaparvata lugens) causes direct and indirect damage as a stunting virus vector in rice. Insect vectors and viruses are closely related with respect to disease transmission to host plants. Thus, this research aimed to determine the specific relationship between a virus and its insect vector on the biology and demography statistics of viruliferous brown planthopper (BPH). Research method included the propagation of N. lugens and stunt virus inoculum, the observation of cohort, stadia duration and egg survival rates, imago life span, and N. lugens life table. The BPH life table was arranged with the jackknife method for two treatments: plants infected by stunt virus and healthy plants. The research result showed that plants infected by stunt virus can shorten the BPH nymphal development stage from instar 2 to instar 5, life cycle, preoviposition period, and double time. Plants infected by stunt virus did not influence the BPH hatching pattern but influenced the total number of hatching eggs. The next BPH generation of stunt virus inflected plants increased 29.51 times more from the previous generation, while on healthy plants, the next BPH generation only increased 27.51 times. Virus-infected plants generally appeared to be superior quality hosts for vectors compared to uninfected plants, thus enhancing vector life table and virus spread.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"7 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135786541","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The anatomical structure of the root, stem, and branch of Gyrinops versteegii trees from different growing sites 不同生长地点黄花蓟马的根、茎、枝解剖结构
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-13 DOI: 10.13057/biodiv/d240863
ARIEL ADIMAHAVIRA, GANIS LUKMANDARU, RINI PUJIARTI, FANANY WURI PRASTIWI, WIDYANTO DWI NUGROHO
Abstract. Adimahavira A, Lukmandaru G, Pujiharti R, Prastiwi FW, Nugroho WD. 2023. The anatomical structure of the root, stem, and branch of Gyrinops versteegii trees from different growing sites. Biodiversitas 24: 4590-4598. Gyrinops versteegii (Gilg) Domke is an agarwood (Gaharu)-producing species with a unique color and very expensive fragrance. Even so, studies on the effects of growing sites on the wood anatomical structure of several parts of G. versteegii have not been thoroughly investigated. Therefore, this research aims to investigate the anatomical structure of G. versteegii on the tree's root, stem, and branch at two different growing sites. Three five-year-old G. versteegii trees from Pacitan and Klaten Districts (Indonesia) were used for the experiment and were harvested from the root, stem, and branch. The wood samples were then put in a glutaraldehyde solution for 24 hours and later in an alcohol solution. The samples were sliced in microtome (15-20 µm) and observed in the transverse, tangential, and radial sections. The results showed that the anatomical characteristics, such as vessel diameter, ray height, ray frequency, interxylary phloem proportion, and frequency differed significantly between growing sites. Furthermore, fiber length, vessel diameter, ray height, ray frequency, and interxylary phloem proportion significantly differed among plant parts. In addition, the branch part has the highest interxylary phloem value, indicating the possibility of a high agarwood resin deposit when agarwood stimulation is applied.
摘要Adimahavira A, Lukmandaru G, Pujiharti R, Prastiwi FW, Nugroho WD。2023. 不同生长地点黄花蓟马的根、茎、枝解剖结构。生物多样性24:4590-4598。Gyrinops verstegii (Gilg) Domke是一种沉香木(Gaharu)生产物种,具有独特的颜色和非常昂贵的香味。尽管如此,关于生长地点对黄芪若干部位木材解剖结构影响的研究还没有得到充分的研究。因此,本研究的目的是在两个不同的生长地点对黄芪的根、茎和枝的解剖结构进行研究。实验采用来自印度尼西亚Pacitan和Klaten地区的三棵5年生的G. verstegii树,从根、茎和枝上收获。然后将木材样品放入戊二醛溶液中24小时,然后放入酒精溶液中。样品在切片机(15-20µm)中切片,观察横向、切向和径向切片。结果表明,不同生长部位的血管直径、射线高度、射线频率、韧皮部比例和频率等解剖特征存在显著差异。不同部位间的纤维长度、导管直径、射线高度、射线频率和韧皮部比例存在显著差异。此外,枝部木质部韧皮部值最高,表明在沉香刺激下,沉香树脂沉积可能较高。
{"title":"The anatomical structure of the root, stem, and branch of Gyrinops versteegii trees from different growing sites","authors":"ARIEL ADIMAHAVIRA, GANIS LUKMANDARU, RINI PUJIARTI, FANANY WURI PRASTIWI, WIDYANTO DWI NUGROHO","doi":"10.13057/biodiv/d240863","DOIUrl":"https://doi.org/10.13057/biodiv/d240863","url":null,"abstract":"Abstract. Adimahavira A, Lukmandaru G, Pujiharti R, Prastiwi FW, Nugroho WD. 2023. The anatomical structure of the root, stem, and branch of Gyrinops versteegii trees from different growing sites. Biodiversitas 24: 4590-4598. Gyrinops versteegii (Gilg) Domke is an agarwood (Gaharu)-producing species with a unique color and very expensive fragrance. Even so, studies on the effects of growing sites on the wood anatomical structure of several parts of G. versteegii have not been thoroughly investigated. Therefore, this research aims to investigate the anatomical structure of G. versteegii on the tree's root, stem, and branch at two different growing sites. Three five-year-old G. versteegii trees from Pacitan and Klaten Districts (Indonesia) were used for the experiment and were harvested from the root, stem, and branch. The wood samples were then put in a glutaraldehyde solution for 24 hours and later in an alcohol solution. The samples were sliced in microtome (15-20 µm) and observed in the transverse, tangential, and radial sections. The results showed that the anatomical characteristics, such as vessel diameter, ray height, ray frequency, interxylary phloem proportion, and frequency differed significantly between growing sites. Furthermore, fiber length, vessel diameter, ray height, ray frequency, and interxylary phloem proportion significantly differed among plant parts. In addition, the branch part has the highest interxylary phloem value, indicating the possibility of a high agarwood resin deposit when agarwood stimulation is applied.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"17 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135786539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of morphological, micromorphological, anatomical structures and matK gene-based identification of aromatic litsea (Litsea cubeba) 香山核桃的形态、微形态、解剖结构特征及matK基因鉴定
Q2 Agricultural and Biological Sciences Pub Date : 2023-09-12 DOI: 10.13057/biodiv/d240859
ISMI NUR AINI, WISANTI WISANTI
Abstract. Aini IN, Wisanti. 2023. Characterization of morphological, micromorphological, anatomical structures and matK gene-based identification of aromatic litsea (Litsea cubeba). Biodiversitas 24: 4557-4567. Aromatic litsea or krangean (Litsea cubeba (Lour.) Persoon) has potential as a drug. L. cubeba's status based on the IUCN red list is the least concern. This research aimed to (i) characterize morphology, micromorphology, and anatomy; (ii) indetify L. cubeba species based on DNA barcodes. The research samples were collected in the Mt. Anjasmoro, East Java, Indonesia at three different altitudes. Data in the form of various characters were analyzed using the one-way ANOVA method to determine the significance of the difference. The statistical test analysis of the quantitative character of L. cubeba showed a significant difference between heights (? = 0.05). The results showed that the characterization of L. cubeba includes (i) morphology: structure of lenticels, color, and substance that coats the lower surface of leaves, type of flower, fruit taste, and aroma; (ii) micromorphology: glands lining the abaxial surface of the lamina, trichomes on both surfaces of the lamina, structure of abaxial epidermal cells, the shape of pollen, shape and distribution of exin (iii) anatomy: cuticle thickness, epidermal cell shape, and presence of secretory cells in the lamina. The molecular identification in the form of L. cubeba barcode DNA based on the matK gene marker matched the Litsea cubeba sequence in NCBI (AB259073.1).
摘要艾尼。IN, Wisanti. 2023。香山苍子的形态、微形态、解剖结构及matK基因鉴定。生物多样性,24:4557-4567。芳香的山苍子或山苍子(litsea cubeba, Lour.)(人)有可能成为一种药物。根据IUCN的红色名录,L. cubeba的状态是最不值得关注的。本研究旨在(i)表征形态学,微观形态学和解剖学;(ii)利用DNA条形码技术对长条长条进行物种鉴定。研究样本是在印度尼西亚东爪哇的Anjasmoro山的三个不同海拔处收集的。采用单因素方差分析方法对各种字符形式的数据进行分析,以确定差异的显著性。数量性状的统计检验分析表明,不同株高(?= 0.05)。结果表明:长条苦瓜的形态特征包括皮孔结构、颜色、叶下表面物质、花的类型、果实的味道和香气;(ii)微观形态学:叶面背面的腺体,叶面两面的毛状体,背面表皮细胞的结构,花粉的形状,外膜的形状和分布。(iii)解剖学:角质层的厚度,表皮细胞的形状,以及叶面分泌细胞的存在。基于matK基因标记的板栗条形码DNA形式的分子鉴定与NCBI (AB259073.1)中的板栗序列相匹配。
{"title":"Characterization of morphological, micromorphological, anatomical structures and matK gene-based identification of aromatic litsea (Litsea cubeba)","authors":"ISMI NUR AINI, WISANTI WISANTI","doi":"10.13057/biodiv/d240859","DOIUrl":"https://doi.org/10.13057/biodiv/d240859","url":null,"abstract":"Abstract. Aini IN, Wisanti. 2023. Characterization of morphological, micromorphological, anatomical structures and matK gene-based identification of aromatic litsea (Litsea cubeba). Biodiversitas 24: 4557-4567. Aromatic litsea or krangean (Litsea cubeba (Lour.) Persoon) has potential as a drug. L. cubeba's status based on the IUCN red list is the least concern. This research aimed to (i) characterize morphology, micromorphology, and anatomy; (ii) indetify L. cubeba species based on DNA barcodes. The research samples were collected in the Mt. Anjasmoro, East Java, Indonesia at three different altitudes. Data in the form of various characters were analyzed using the one-way ANOVA method to determine the significance of the difference. The statistical test analysis of the quantitative character of L. cubeba showed a significant difference between heights (? = 0.05). The results showed that the characterization of L. cubeba includes (i) morphology: structure of lenticels, color, and substance that coats the lower surface of leaves, type of flower, fruit taste, and aroma; (ii) micromorphology: glands lining the abaxial surface of the lamina, trichomes on both surfaces of the lamina, structure of abaxial epidermal cells, the shape of pollen, shape and distribution of exin (iii) anatomy: cuticle thickness, epidermal cell shape, and presence of secretory cells in the lamina. The molecular identification in the form of L. cubeba barcode DNA based on the matK gene marker matched the Litsea cubeba sequence in NCBI (AB259073.1).","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":"24 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135887521","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Biodiversitas
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1