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Retraction: Osteogenic protein-1 inhibits nucleus pulposus cell apoptosis through regulating the NF-κB/ROS pathway in an inflammation environment. 撤回:骨生成蛋白-1在炎症环境中通过调节NF-κB/ROS通路抑制髓核细胞凋亡
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-28 DOI: 10.1042/BSR-2018-1530_RET
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引用次数: 0
Retraction: Resveratrol attenuates inflammation environment-induced nucleus pulposus cell senescence in vitro. 撤回:白藜芦醇可减轻炎症环境诱导的体外髓核细胞衰老。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-28 DOI: 10.1042/BSR-2019-0126_RET
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引用次数: 0
Advances in the structural basis for angiotensin-1 converting enzyme (ACE) inhibitors. 血管紧张素-1 转换酶 (ACE) 抑制剂结构基础的进展。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-28 DOI: 10.1042/BSR20240130
K Ravi Acharya, Kyle S Gregory, Edward D Sturrock

Human somatic angiotensin-converting enzyme (ACE) is a key zinc metallopeptidase that plays a pivotal role in the renin-angiotensin-aldosterone system (RAAS) by regulating blood pressure and electrolyte balance. Inhibition of ACE is a cornerstone in the management of hypertension, cardiovascular diseases, and renal disorders. Recent advances in structural biology techniques have provided invaluable insights into the molecular mechanisms underlying ACE inhibition, facilitating the design and development of more effective therapeutic agents. This review focuses on the latest advancements in elucidating the structural basis for ACE inhibition. High-resolution crystallographic studies of minimally glycosylated individual domains of ACE have revealed intricate molecular details of the ACE catalytic N- and C-domains, and their detailed interactions with clinically relevant and newly designed domain-specific inhibitors. In addition, the recently elucidated structure of the glycosylated form of full-length ACE by cryo-electron microscopy (cryo-EM) has shed light on the mechanism of ACE dimerization and revealed continuous conformational changes which occur prior to ligand binding. In addition to these experimental techniques, computational approaches have also played a pivotal role in elucidating the structural basis for ACE inhibition. Molecular dynamics simulations and computational docking studies have provided atomic details of inhibitor binding kinetics and energetics, facilitating the rational design of novel ACE inhibitors with improved potency and selectivity. Furthermore, computational analysis of the motions observed by cryo-EM allowed the identification of allosteric binding sites on ACE. This affords new opportunities for the development of next-generation allosteric inhibitors with enhanced pharmacological properties. Overall, the insights highlighted in this review could enable the rational design of novel ACE inhibitors with improved efficacy and safety profiles, ultimately leading to better therapeutic outcomes for patients with hypertension and cardiovascular diseases.

人体血管紧张素转换酶(ACE)通过调节血压和电解质平衡,在肾素-血管紧张素-醛固酮系统中发挥着关键作用。抑制 ACE 是治疗高血压、心血管疾病和肾脏疾病的基石。结构生物学技术的最新进展为了解 ACE 抑制的分子机制提供了宝贵的资料,有助于设计和开发更有效的治疗药物。本综述重点介绍在阐明 ACE 抑制的结构基础方面取得的最新进展。对糖基化程度极低的 ACE 单个结构域进行的高分辨率晶体学研究揭示了 ACE 催化 N 和 C 结构域错综复杂的分子细节,以及它们与临床相关和新设计的结构域特异性抑制剂的详细相互作用。此外,最近通过冷冻电子显微镜(cryo-EM)阐明的全长 ACE 糖基化形式的结构也揭示了 ACE 的二聚化机制,并揭示了配体结合前发生的连续构象变化。此外,分子动力学模拟和计算对接研究提供了抑制剂结合动力学和能量学的原子细节,有助于合理设计新型 ACE 抑制剂,提高其效力和选择性。此外,通过对低温电子显微镜观察到的运动进行计算分析,还确定了 ACE 的异位结合位点。这为开发药理特性更强的下一代异位抑制剂提供了新的机遇。总之,这篇综述所强调的见解可帮助合理设计新型 ACE 抑制剂,提高其疗效和安全性,最终为高血压和心血管疾病患者带来更好的治疗效果。
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引用次数: 0
Adipose tissue-liver cross-talk: a route to hepatic dysfunction in pregnant women with obesity. 脂肪组织-肝脏串扰:肥胖孕妇肝功能异常的途径。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-28 DOI: 10.1042/BSR20231679
Diana Sousa, Carina C Magalhães, Paulo Matafome, Susana P Pereira

Obesity during pregnancy has been escalating, becoming a huge problem that poses consequences not only for the health of the offspring but also for the maternal well-being. Women's adipose and hepatic tissue metabolism undergoes significant changes during the gestational period. During pregnancy, obesity is a primary instigator of steatosis, increasing the risk of non-alcholic fatty liver disease (NAFLD), now recognized under the updated nomenclature metabolic dysfunction-associated steatotic liver disease (MASLD). Pregnant women with obesity present higher levels of free fatty acids and glucose, reduction in insulin sensitivity, and adipose tissue endocrine dysregulation. Furthermore, obesity-induced modifications in clock genes and lipid-associated gene expression within adipose tissue disrupt crucial metabolic adaptations, potentially culminating in adipose tissue dysfunction. Thus, the liver experiences increased exposure to free fatty acids through the portal vein. Higher uptake of free fatty acids into the liver disrupts hepatic lipid oxidation while enhances lipogenesis, thereby predisposing to ectopic fat deposition within the liver. This review focuses on the obesity-induced changes during pregnancy in both liver and adipose tissue metabolism, elucidating how the metabolic crosstalk between these two organs can be dysregulated in pregnant women living with obesity.

妊娠期肥胖症日益严重,已成为一个巨大的问题,不仅会影响后代的健康,还会影响孕妇的健康。妇女的脂肪和肝组织代谢在妊娠期会发生显著变化。在妊娠期间,肥胖是脂肪变性的主要诱因,增加了非胆汁性脂肪肝(NAFLD)的患病风险。肥胖孕妇体内游离脂肪酸和葡萄糖水平较高,胰岛素敏感性降低,脂肪组织内分泌失调。此外,肥胖还导致脂肪组织内的时钟基因和脂质相关基因表达发生改变,破坏了重要的代谢适应性,最终可能导致脂肪组织功能障碍。因此,肝脏通过门静脉接触游离脂肪酸的机会增加。肝脏摄入更多游离脂肪酸会破坏肝脏脂质氧化,同时促进脂肪生成,从而导致脂肪在肝脏内异位沉积。本综述将重点讨论肥胖引起的妊娠期肝脏和脂肪组织代谢的变化,阐明肥胖孕妇这两个器官之间的代谢串联是如何失调的。
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引用次数: 0
Expression of Concern: Glypican-3 promotes cell proliferation and tumorigenesis through up-regulation of b-catenin expression in lung squamous cell carcinoma. 关注表达:Glypican-3 通过上调肺鳞状细胞癌中 b-catenin 的表达促进细胞增殖和肿瘤发生。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-28 DOI: 10.1042/BSR-2018-1147_EOC
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引用次数: 0
Expression of Concern: Atorvastatin ameliorates early brain injury through inhibition of apoptosis and ER stress in a rat model of subarachnoid hemorrhage. 表达关注:在大鼠蛛网膜下腔出血模型中,阿托伐他汀通过抑制细胞凋亡和ER应激改善早期脑损伤。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-28 DOI: 10.1042/BSR-2017-1035_EOC
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引用次数: 0
Retraction: Static compression down-regulates N-cadherin expression and facilitates loss of cell phenotype of nucleus pulposus cells in a disc perfusion culture. 撤回:在椎间盘灌注培养中,静态挤压会下调 N-粘连蛋白的表达,并促进髓核细胞表型的丧失。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-28 DOI: 10.1042/BSR-2017-1551_RET
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引用次数: 0
Correction: Long non-coding RNA SPRY4-IT1 promotes epithelial-mesenchymal transition of cervical cancer by regulating the miR-101-3p/ZEB1 axis. 更正:长非编码 RNA SPRY4-IT1 通过调节 miR-101-3p/ZEB1 轴促进宫颈癌的上皮-间质转化。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR-2018-1339_COR
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引用次数: 0
eIF2β zinc-binding domain interacts with the eIF2γ subunit through the guanine nucleotide binding interface to promote Met-tRNAiMet binding. eIF2β 锌结合域通过鸟嘌呤核苷酸结合界面与 eIF2γ 亚基相互作用,促进 Met-tRNAiMet 结合。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR20240438
Aranyadip Gayen, Pankaj V Alone

The heterotrimeric eIF2 complex consists of a core eIF2γ subunit to which binds eIF2α and eIF2β subunits and plays an important role in delivering the Met-tRNAiMet to the 40S ribosome and start codon selection. The intricacies of eIF2β-γ interaction in promoting Met-tRNAiMet binding are not clearly understood. Previously, the zinc-binding domain (ZBD) eIF2βS264Y mutation was reported to cause Met-tRNAiMet binding defect due to the intrinsic GTPase activity. We showed that the eIF2βS264Y mutation has eIF2β-γ interaction defect. Consistently, the eIF2βT238A intragenic suppressor mutation restored the eIF2β-γ and Met-tRNAiMet binding. The eIF2β-ZBD residues Asn252Asp and Arg253Ala mutation caused Met-tRNAiMet binding defect that was partially rescued by the eIF2βT238A mutation, suggesting the eIF2β-ZBD modulates Met-tRNAiMet binding. The suppressor mutation rescued the translation initiation fidelity defect of the eIF2γN135D SW-I mutation and eIF2βF217A/Q221A double mutation in the HTH domain. The eIF2βT238A suppressor mutation could not rescue the eIF2β binding defect of the eIF2γV281K mutation; however, combining the eIF2βS264Y mutation with the eIF2γV281K mutation was lethal. In addition to the previously known interaction of eIF2β with the eIF2γ subunit via its α1-helix, the eIF2β-ZBD also interacts with the eIF2γ subunit via guanine nucleotide-binding interface; thus, the eIF2β-γ interacts via two distinct binding sites.

异三聚体 eIF2 复合物包括一个核心 eIF2γ 亚基,它与 eIF2α 和 eIF2β 亚基结合,在将 Met-tRNAiMet 运送到 40S 核糖体和起始密码子选择方面发挥重要作用。目前还不清楚 eIF2β-γ 在促进 Met-tRNAiMet 结合过程中相互作用的复杂性。此前有报道称,锌结合域(ZBD)eIF2βS264Y突变会导致Met-tRNAiMet结合缺陷,原因是其内在的GTPase活性。我们发现,eIF2βS264Y突变具有eIF2β-γ相互作用缺陷。同样,eIF2βT238A 基因内抑制突变恢复了 eIF2β-γ 和 Met-tRNAiMet 结合缺陷。eIF2β-ZBD残基Asn252Asp和Arg253Ala突变导致Met-tRNAiMet结合缺陷,而eIF2βT238A突变可部分修复该缺陷,这表明eIF2β-ZBD可调节Met-tRNAiMet的结合。抑制突变可挽救 HTH 结构域中 eIF2γN135D SW-I 突变和 eIF2βF217A/Q221A 双突变导致的翻译起始保真度缺陷。eIF2βT238A抑制突变不能挽救eIF2γV281K突变的eIF2β结合缺陷,但eIF2βS264Y突变与eIF2γV281K突变结合则是致死的。除了之前已知的 eIF2β 通过其 α1-helix 与 eIF2γ 亚基相互作用外,eIF2β-ZBD 还通过鸟嘌呤核苷酸结合界面与 eIF2γ 亚基相互作用;因此,eIF2β-γ 通过两个不同的结合位点相互作用。
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引用次数: 0
Screening of active components of Ganoderma lucidum and decipher its molecular mechanism to improve learning and memory disorders. 灵芝活性成分的筛选及其改善学习和记忆障碍的分子机制的破译。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR20232068
Xiao-Tian Zhang, Chun-Lei Ji, Yu-Juan Fu, Yue Yang, Guang-Yu Xu

Learning and memory impairment (LMI), a common degenerative central nervous system disease. Recently, more and more studies have shown that Ganoderma lucidum (GL) can improve the symptoms of LMI. The active ingredients in GL and their corresponding targets were screened through TCMSP (Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform) and BATMAN-TCM (Bioinformatics Analysis Tool for Molecular Mechanism of Traditional Chinese Medicine) databases, and the potential LMI targets were searched for through GeneCard (GeneCards Human Gene Database) and DrugBank. Then, we construct a 'main active ingredient-target' network and a protein-protein interaction (PPI) network diagram.The GO (Gene Ontology) functional enrichment analysis and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway annotation analysis were performed on the common targets through DAVID (Database for Annotation Visualization and Integrated Discovery) to clarify the potential molecular mechanism of action of active ingredients in GL. The tumor necrosis factor (TNF) protein was verified by Western blot; Twenty one active ingredients in GL and 142 corresponding targets were screened out, including 59 targets shared with LMI. The 448 biological processes shown by the GO functional annotation results and 55 signal pathways shown by KEGG enrichment analysis were related to the improvement of LMI by GL, among which the correlation of Alzheimer's disease pathway is the highest, and TNF was the most important protein; TNF can improve LMI. GL can improve LMI mainly by 10 active ingredients in it, and they may play a role by regulating Alzheimer's disease pathway and TNF protein.

学习和记忆障碍(LMI)是一种常见的中枢神经系统退化性疾病。最近,越来越多的研究表明灵芝(GL)可以改善 LMI 的症状。通过 TCMSP(中药系统药理学数据库与分析平台)和 BATMAN-TCM(中药分子机理生物信息学分析工具)数据库筛选灵芝中的有效成分及其相应的靶点,并通过 GeneCard(GeneCards 人类基因数据库)和 DrugBank 搜索潜在的 LMI 靶点。通过DAVID(Database for Annotation Visualization and Integrated Discovery,注释可视化和综合发现数据库)对常见靶点进行GO(Gene Ontology,基因本体)功能富集分析和KEGG(Kyoto Encyclopedia of Genes and Genomes,京都基因和基因组百科全书)通路注释分析,以阐明GL中有效成分的潜在分子作用机制。通过Western印迹验证了TNF蛋白;筛选出GL中的21种活性成分和142个相应的靶标,其中包括59个与LMI共享的靶标。GO功能注释结果显示的448个生物过程和KEGG富集分析显示的55个信号通路与GL改善LMI有关,其中阿尔茨海默病通路的相关性最高,TNF是最重要的蛋白;TNF可改善LMI。
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