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Retraction: PAR-2 promotes cell proliferation, migration and invasion through activating PI3K/AKT signaling pathway in oral squamous cell carcinoma. 撤回:PAR-2通过激活口腔鳞状细胞癌中的PI3K/AKT信号通路促进细胞增殖、迁移和侵袭。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR-2018-2476_RET
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引用次数: 0
Sulforaphane enhanced muscle growth by promoting lipid oxidation through modulating key signaling pathways. 红景天通过调节关键信号通路促进脂质氧化,从而促进肌肉生长。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR20240084
Rui Zhang, Suqin Chen, Feng Zhao, Wei Wang, Dayu Liu, Lin Chen, Ting Bai, Zhoulin Wu, Lili Ji, Jiamin Zhang

Sulforaphane (SFN) has shown diverse effects on human health and diseases. SFN was administered daily to C57BL/6J mice at doses of 1 mg/kg (SFN1) and 3 mg/kg (SFN3) for 8 weeks. Both doses of SFN accelerated body weight increment. The cross-sectional area and diameter of Longissimus dorsi (LD) muscle fibers were enlarged in SFN3 group. Triglyceride (TG) and total cholesterol (TC) levels in LD muscle were decreased in SFN groups. RNA sequencing results revealed that 2455 and 2318 differentially expressed genes (DEGs) were found in SFN1 and SFN3 groups, respectively. Based on GO enrichment analysis, 754 and 911 enriched GO terms in the SFN1 and SFN3 groups, respectively. KEGG enrichment analysis shown that one KEGG pathway was enriched in the SFN1 group, while six KEGG pathways were enriched in the SFN3 group. The expressions of nine selected DEGs validated with qRT-PCR were in line with the RNA sequencing data. Furthermore, SFN treatment influenced lipid and protein metabolism related pathways including AMPK signaling, fatty acid metabolism signaling, cholesterol metabolism signalling, PPAR signaling, peroxisome signaling, TGFβ signaling, and mTOR signaling. In summary, SFN elevated muscle fibers size and reduced TG and TC content of in LD muscle by modulating protein and lipid metabolism-related signaling pathways.

红景天(SFN)对人类健康和疾病有多种影响。C57BL/6J小鼠每天服用1毫克/千克(SFN1)和3毫克/千克(SFN3)剂量的SFN,连续服用8周。两种剂量的SFN都能加速体重增加。SFN3组背阔肌纤维的横截面积和直径均增大。SFN组LD肌肉中的甘油三酯(TG)和总胆固醇(TC)水平降低。RNA 测序结果显示,SFN1 组和 SFN3 组分别有 2455 和 2318 个差异表达基因(DEGs)。根据GO富集分析,SFN1组和SFN3组分别有754个和911个GO富集词。KEGG富集分析表明,SFN1组富集了1个KEGG通路,而SFN3组富集了6个KEGG通路。用 qRT-PCR 验证的 9 个选定 DEGs 的表达与 RNA 测序数据一致。此外,SFN 处理影响了脂质和蛋白质代谢相关通路,包括 AMPK 信号、脂肪酸代谢信号、胆固醇代谢信号、PPAR 信号、过氧化物酶体信号、TGFβ 信号和 mTOR 信号。总之,SFN 通过调节蛋白质和脂质代谢相关的信号通路,增加了 LD 肌肉的肌纤维尺寸,降低了 TG 和 TC 含量。
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引用次数: 0
A Polynesian-specific SLC22A3 variant associates with low plasma lipoprotein(a) concentrations independent of apo(a) isoform size in males. 波利尼西亚特异性 SLC22A3 变体与男性血浆脂蛋白(a)浓度低有关,与载脂蛋白(a)同工酶大小无关。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR20240403
Qian Wang, Sally McCormick, Megan P Leask, Huti Watson, Conor O'Sullivan, Jeremy D Krebs, Rosemary Hall, Patricia Whitfield, Troy L Merry, Rinki Murphy, Peter R Shepherd

Lipoprotein(a) (Lp(a)) is a low-density lipoprotein (LDL)-like particle in which the apolipoprotein B component is covalently linked to apolipoprotein(a) (apo(a)). Lp(a) is a well-established independent risk factor for cardiovascular diseases. Plasma Lp(a) concentrations vary enormously between individuals and ethnic groups. Several nucleotide polymorphisms in the SLC22A3 gene associate with Lp(a) concentration in people of different ethnicities. We investigated the association of a Polynesian-specific (Māori and Pacific peoples) SLC22A3 gene coding variant p.Thr44Met) with the plasma concentration of Lp(a) in a cohort of 302 healthy Polynesian males. An apo(a)-size independent assay assessed plasma Lp(a) concentrations; all other lipid and apolipoprotein concentrations were measured using standard laboratory techniques. Quantitative real-time polymerase chain reaction was used to determine apo(a) isoforms. The range of metabolic (HbA1c, blood pressure, and blood lipids) and blood lipid variables were similar between the non-carriers and carriers in age, ethnicity and BMI adjusted models. However, rs8187715 SLC22A3 variant was significantly associated with lower Lp(a) concentrations. Median Lp(a) concentration was 10.60 nmol/L (IQR: 5.40-41.00) in non-carrier group, and was 7.60 nmol/L (IQR: 5.50-12.10) in variant carrier group (P<0.05). Lp(a) concentration inversely correlated with apo(a) isoform size. After correction for apo(a) isoform size, metabolic parameters and ethnicity, the association between the SLC22A3 variant and plasma Lp(a) concentration remained. The present study is the first to identify the association of this gene variant and low plasma Lp(a) concentrations. This provides evidence for better guidance on ethnic specific cut-offs when defining 'elevated' and 'normal' plasma Lp(a) concentrations in clinical applications.

脂蛋白(a)(Lp(a))是一种类似低密度脂蛋白(LDL)的颗粒,其中的脂蛋白 B 成分与脂蛋白(a)共价连接。脂蛋白(a)是一种公认的心血管疾病独立风险因素。血浆中脂蛋白(a)的浓度在个体和种族群体之间存在巨大差异。在不同种族的人群中,SLC22A3 基因中的几种核苷酸多态性与脂蛋白(a)浓度有关。我们在一组 302 名健康的波利尼西亚男性中研究了波利尼西亚人(毛利人和太平洋岛屿人)特有的 SLC22A3 基因编码变异 p.Thr44Met 与血浆脂蛋白(a)浓度的关系。一种与载脂蛋白(a)大小无关的检测方法可评估血浆中载脂蛋白(a)的浓度,所有其他血脂和载脂蛋白浓度均采用标准实验室技术进行测量。采用定量实时聚合酶链反应测定载脂蛋白(a)同工酶。在年龄、种族和体重指数调整模型中,非携带者和携带者的代谢(HbA1c、血压和血脂)和血脂变量范围相似。然而,rs8187715 SLC22A3 变异与较低的脂蛋白(a)浓度显著相关。非携带者组的脂蛋白(a)浓度中位数为 10.60 nmol/L(IQR 5.40 至 41.00),而变异携带者组的脂蛋白(a)浓度中位数为 7.60 nmol/L(IQR 5.50 至 12.10)(p
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引用次数: 0
KRIT1 in vascular biology and beyond. 血管生物学及其他领域中的 KRIT1。
IF 4.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR20231675
Angela J Glading

KRIT1 is a 75 kDa scaffolding protein which regulates endothelial cell phenotype by limiting the response to inflammatory stimuli and maintaining a quiescent and stable endothelial barrier. Loss-of-function mutations in KRIT1 lead to the development of cerebral cavernous malformations (CCM), a disease marked by the formation of abnormal blood vessels which exhibit a loss of barrier function, increased endothelial proliferation, and altered gene expression. While many advances have been made in our understanding of how KRIT1, and the functionally related proteins CCM2 and PDCD10, contribute to the regulation of blood vessels and the vascular barrier, some important open questions remain. In addition, KRIT1 is widely expressed and KRIT1 and the other CCM proteins have been shown to play important roles in non-endothelial cell types and tissues, which may or may not be related to their role as pathogenic originators of CCM. In this review, we discuss some of the unsettled questions regarding the role of KRIT1 in vascular physiology and discuss recent advances that suggest this ubiquitously expressed protein may have a role beyond the endothelial cell.

KRIT1 是一种 75 kDa 的支架蛋白,它通过限制对炎症刺激的反应以及维持静止和稳定的内皮屏障来调节内皮细胞的表型。KRIT1 的功能缺失突变会导致脑海绵畸形(CCM)的发生,这种疾病的特征是形成异常血管,表现出屏障功能丧失、内皮细胞增殖增加和基因表达改变。虽然我们对 KRIT1 以及与之功能相关的蛋白 CCM2 和 PDCD10 如何调控血管和血管屏障的认识取得了许多进展,但仍存在一些重要的未决问题。此外,KRIT1 被广泛表达,而且 KRIT1 和其他 CCM 蛋白已被证明在非内皮细胞类型和组织中发挥重要作用,这可能与它们作为 CCM 致病源的作用有关,也可能无关。在这篇综述中,我们将讨论有关 KRIT1 在血管生理学中作用的一些悬而未决的问题,并讨论最近的研究进展,这些进展表明这种普遍表达的蛋白可能在内皮细胞之外也有作用。
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引用次数: 0
Functional analysis of a panel of molecular markers for diagnosis of systemic lupus erythematosus in rats. 用于诊断大鼠系统性红斑狼疮的分子标记的功能分析。
IF 4.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR20240318
May A Azzam, Sally A Fahim, Asmaa A ElMonier, Nadine W Maurice

Introduction: Systemic lupus erythematosus (SLE) is a diverse autoimmune disease that arises from a combination of complex genetic factors and environmental influences. While circRNAs and miRNAs have recently been identified as promising biomarkers for disease diagnosis, their specific expression patterns, and clinical implications in SLE are not yet fully understood.

Aim of the work: The aim of the present study was to determine the role of a panel of noncoding-RNAs specifically circRNAs (circ-TubD1, circ-CDC27, and circ-Med14), along with miRNA (rno-miR-146a-5p) and mRNA (TRAF6), as novel minimally invasive diagnostic biomarkers for experimentally induced SLE. Additionally, the study involved an insilico bioinformatics analysis to explore potential pathways involved in the pathogenesis of SLE, aiming to enhance our understanding of the disease, enable early diagnosis, and facilitate improved treatment strategies.

Materials and methods: SLE was induced in rats using single IP injection of incomplete Freund's adjuvant (IFA). The Induction was confirmed by assessing the ANA and anti-ds DNA levels using ELSA technique. qPCR analysis was conducted to assess the expression of selected RNAs in sera collected from a group of 10 rats with induced SLE and a control group of 10 rats. In addition, bioinformatics and functional analysis were used to construct a circRNA-miRNA-mRNA network and to determine the potential function of these differentially expressed circRNAs.

Results: SLE rats demonstrated significantly higher expression levels of circ-CDC27, circ-Med14, and rno-miR-146a-5p as well as TRAF6, with lower expression level of circ-TubD1 in sera of SLE rats relative to controls. ROC curve analysis indicated that all the selected non-coding RNAs could serve as potential early diagnostic markers for SLE. In addition, the expression level of circ-TubD1 was negatively correlated with rno-miR-146a-5p, however, rno-miR-146a-5p was positively correlated with TRAF6. Bioinformatic analysis revealed the incorporation of the circRNAs targeted genes in various immune system and neurodegeneration pathways.

Conclusions: Therefore, circRNAs; circ-TubD1, circ-CDC27, and circ-Med14, in addition to the miRNA (rno-miR-146a-5p) and mRNA (TRAF6) may be involved in the development of SLE and may have promising roles for future diagnosis and targeted therapy.

本研究旨在确定一组非编码 RNA(特别是 circRNA,包括 circ-TubD1、circ-CDC27 和 circ-Med14)以及 miRNA(rno-miR-146a-5p)和 mRNA(TRAF6)作为实验诱导的系统性红斑狼疮的新型微创诊断生物标志物的作用。此外,该研究还进行了一项内部生物信息学分析,以探索系统性红斑狼疮发病机制中的潜在通路,从而加深我们对该疾病的了解,实现早期诊断并改进治疗策略。用不完全弗氏佐剂(IFA)单次IP注射诱导大鼠患上系统性红斑狼疮。使用酶联免疫吸附技术评估 ANA 和抗 DNA 水平,以确认诱导作用。此外,还利用生物信息学和功能分析构建了一个 circRNA-miRNA-mRNA 网络,并确定了这些不同表达的 circRNA 的潜在功能。与对照组相比,系统性红斑狼疮大鼠血清中circ-CDC27、circ-Med14和rno-miR-146a-5p以及TRAF6的表达水平明显较高,而circ-TubD1的表达水平较低。ROC曲线分析表明,所有被选中的非编码RNA都可作为潜在的系统性红斑狼疮早期诊断标志物。此外,circ-TubD1的表达水平与rno-miR-146a-5p呈负相关,但rno-miR-146a-5p与TRAF6呈正相关。生物信息学分析表明,circRNAs的靶基因与各种免疫系统和神经退行性病变通路有关。
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引用次数: 0
Expression, purification and application of a recombinant, membrane permeating version of the light chain of botulinum toxin B. B 型肉毒毒素轻链的重组膜渗透型的表达、纯化和应用。
IF 4.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR20240117
Micaela Vanina Buzzatto, Fabiana Cristina Benegas Guerrero, Pablo Ariel Álvarez, María Paz Zizzias, Luis Mariano Polo, Claudia Nora Tomes

Botulinum neurotoxins (BoNTs) are valuable tools to unveil molecular mechanisms of exocytosis in neuronal and non-neuronal cells due to their peptidase activity on exocytic isoforms of SNARE proteins. They are produced by Clostridia as single-chain polypeptides that are proteolytically cleaved into light, catalytic domains covalently linked via disulfide bonds to heavy, targeting domains. This format of two subunits linked by disulfide bonds is required for the full neurotoxicity of BoNTs. We have generated a recombinant version of BoNT/B that consists of the light chain of the toxin fused to the protein transduction domain of the human immunodeficiency virus-1 (TAT peptide) and a hexahistidine tag. His6-TAT-BoNT/B-LC, expressed in Escherichia coli and purified by affinity chromatography, penetrated membranes and exhibited strong enzymatic activity, as evidenced by cleavage of the SNARE synaptobrevin from rat brain synaptosomes and human sperm cells. Proteolytic attack of synaptobrevin hindered exocytosis triggered by a calcium ionophore in the latter. The novel tool reported herein disrupts the function of a SNARE protein within minutes in cells that may or may not express the receptors for the BoNT/B heavy chain, and without the need for transient transfection or permeabilization.

肉毒杆菌神经毒素(BoNTs)对 SNARE 蛋白的外排异构体具有肽酶活性,是揭示神经元和非神经元细胞外排的分子机制的重要工具。它们是由梭状芽孢杆菌产生的单链多肽,通过蛋白水解作用裂解成轻型催化结构域,并通过二硫键与重型靶向结构域共价连接。这种通过二硫键连接的两个亚基的形式是 BoNTs 充分发挥神经毒性的必要条件。我们生成了一种重组型 BoNT/B,它由融合了人类免疫缺陷病毒-1 蛋白质转导结构域(TAT 肽)的毒素轻链和六组氨酸标签组成。His 6 -TAT-BoNT/B-LC在大肠杆菌中表达,并通过亲和层析法纯化,可穿透膜并表现出很强的酶活性,大鼠脑突触体和人精细胞中的SNARE突触素被裂解就是证明。对突触珠蛋白的蛋白水解作用阻碍了后者由钙离子诱导剂引发的外泌。本文报告的新工具可在几分钟内破坏可能表达或不表达 BoNT/B 重链受体的细胞中 SNARE 蛋白的功能,而且无需瞬时转染或渗透。
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引用次数: 0
Retraction: LncRNA ANRIL affects the sensitivity of ovarian cancer to cisplatin via regulation of let-7a/HMGA2 axis. 撤回:LncRNA ANRIL通过调控let-7a/HMGA2轴影响卵巢癌对顺铂的敏感性
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR-2018-2101_RET
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引用次数: 0
Metabolic profiling and combined therapeutic strategies unveil the cytotoxic potential of selenium-chrysin (SeChry) in NSCLC cells. 代谢分析和联合治疗策略揭示了硒-金黄素(SeChry)在 NSCLC 细胞中的细胞毒性潜力。
IF 4.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR20240752
Cindy Mendes, Isabel Lemos, Ana Hipólito, Bruna Abreu, Catarina Freitas-Dias, Filipa Martins, Rita F Pires, Hélio Barros, Vasco D B Bonifácio, Luís G Gonçalves, Jacinta Serpa

Lung cancer ranks as the predominant cause of cancer-related mortalities on a global scale. Despite progress in therapeutic interventions, encompassing surgical procedures, radiation, chemotherapy, targeted therapies and immunotherapy, the overall prognosis remains unfavorable. Imbalances in redox equilibrium and disrupted redox signaling, common traits in tumors, play crucial roles in malignant progression and treatment resistance. Cancer cells, often characterized by persistent high levels of reactive oxygen species (ROS) resulting from genetic, metabolic, and microenvironmental alterations, counterbalance this by enhancing their antioxidant capacity. Cysteine availability emerges as a critical factor in chemoresistance, shaping the survival dynamics of non-small cell lung cancer (NSCLC) cells. Selenium-chrysin (SeChry) was disclosed as a modulator of cysteine intracellular availability. This study comprehensively characterizes the metabolism of SeChry and investigates its cytotoxic effects in NSCLC. SeChry treatment induces notable metabolic shifts, particularly in selenocompound metabolism, impacting crucial pathways such as glycolysis, gluconeogenesis, the tricarboxylic acid (TCA) cycle, and amino acid metabolism. Additionally, SeChry affects the levels of key metabolites such as acetate, lactate, glucose, and amino acids, contributing to disruptions in redox homeostasis and cellular biosynthesis. The combination of SeChry with other treatments, such as glycolysis inhibition and chemotherapy, results in greater efficacy. Furthermore, by exploiting NSCLC's capacity to consume lactate, the use of lactic acid-conjugated dendrimer nanoparticles for SeChry delivery is investigated, showing specificity to cancer cells expressing monocarboxylate transporters.

在全球范围内,肺癌是造成癌症相关死亡的主要原因。尽管在治疗干预方面取得了进展,包括外科手术、放射治疗、化疗、靶向治疗和免疫治疗,但总体预后仍然不容乐观。氧化还原平衡失衡和氧化还原信号传递紊乱是肿瘤的常见特征,在恶性进展和抗药性方面起着至关重要的作用。由于遗传、代谢和微环境的改变,癌细胞通常具有持续高水平活性氧(ROS)的特征,它们会通过增强自身的抗氧化能力来抵消这种情况。半胱氨酸的可用性成为化疗耐药性的关键因素,影响着非小细胞肺癌(NSCLC)细胞的生存动态。硒-金丝桃素(SeChry)被认为是半胱氨酸细胞内可用性的调节剂。本研究全面描述了 SeChry 的代谢特征,并研究了它对 NSCLC 的细胞毒性作用。SeChry 治疗诱导了显著的代谢转变,尤其是在硒化合物代谢方面,影响了糖酵解、葡萄糖生成、三羧酸(TCA)循环和氨基酸代谢等关键途径。此外,SeChry 还会影响醋酸盐、乳酸盐、葡萄糖和氨基酸等关键代谢物的水平,导致氧化还原平衡和细胞生物合成紊乱。将 SeChry 与糖酵解抑制和化疗等其他治疗方法结合使用,会产生更大的疗效。此外,通过利用 NSCLC 消耗乳酸的能力,研究人员还研究了使用乳酸共轭树枝状聚合物纳米粒子来递送 SeChry,结果显示这种纳米粒子对表达单羧酸盐转运体的癌细胞具有特异性。
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引用次数: 0
Expression of Concern: Long non-coding RNA TUSC7 suppresses osteosarcoma by targeting miR-211. 表达关注:长非编码 RNA TUSC7 通过靶向 miR-211 抑制骨肉瘤。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR-2019-0291_EOC
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引用次数: 0
Comprehensive analysis of the endothelin system in the kidneys of mice, rats, and humans. 全面分析小鼠、大鼠和人类肾脏中的内皮素系统。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-31 DOI: 10.1042/BSR20240768
Margi Patel, Nicholas Harris, Malgorzata Kasztan, Kelly A Hyndman

The intrarenal endothelin (ET) system is an established moderator of kidney physiology and mechanistic contributor to the pathophysiology and progression of chronic kidney disease in humans and rodents. The aim of the present study was to characterize ET system by combining single cell RNA sequencing (scRNA-seq) data with immunolocalization in human and rodent kidneys of both sexes. Using publicly available scRNA-seq data, we assessed sex and kidney disease status (human), age and sex (rats), and diurnal expression (mice) on the kidney ET system expression. In normal human biopsies of both sexes and in rodent kidney samples, the endothelin-converting enzyme-1 (ECE1) and ET-1 were prominent in the glomeruli and endothelium. These data agreed with the scRNA-seq data from these three species, with ECE1/Ece1 mRNA enriched in the endothelium. However, the EDN1/Edn1 gene (encodes ET-1) was rarely detected, even though it was immunolocalized within the kidneys, and plasma and urinary ET-1 excretion are easily measured. Within each species, there were some sex-specific differences. For example, in kidney biopsies from living donors, men had a greater glomerular endothelial cell endothelin receptor B (Ednrb) compared with women. In mice, females had greater kidney endothelial cell Ednrb than male mice. As commercially available antibodies did not work in all species, and RNA expression did not always correlate with protein levels, multiple approaches should be considered to maintain required rigor and reproducibility of the pre- and clinical studies evaluating the intrarenal ET system.

肾内内皮素(ET)系统是肾脏生理的既定调节因子,也是人类和啮齿类动物慢性肾脏疾病的病理生理学和进展的机理因素。本研究的目的是通过结合单细胞 RNA 测序(scRNA-seq)数据和免疫定位来描述人和啮齿类动物肾脏中的内皮素系统。利用公开的 scRNA-seq 数据,我们评估了性别和肾脏疾病状态(人类)、年龄和性别(大鼠)以及昼夜表达(小鼠)对肾脏 ET 系统表达的影响。在正常人的雌雄肾活检样本和啮齿类动物的肾脏样本中,内皮素转换酶-1(ECE1)和 ET-1 在肾小球和内皮细胞中都很突出。这些数据与这 3 个物种的 scRNA-seq 数据一致,即 ECE1/Ece1 mRNA 在内皮中富集。不过,EDN1/Edn1 基因(编码 ET-1)很少被检测到,尽管该基因在肾脏内有免疫定位,而且血浆和尿液中 ET-1 的排泄也很容易测量。在每个物种中,都存在一些性别差异。例如,在活体捐献者的肾活检中,男性肾小球内皮细胞内皮素受体 B(Ednrb)的含量高于女性。在小鼠中,雌性小鼠的肾脏内皮细胞 Ednrb 比雄性小鼠大。由于市售抗体并非对所有物种都有效,而且 RNA 表达与蛋白水平并不总是相关,因此应考虑采用多种方法来保持评估肾内 ET 系统的前期和临床研究所需的严谨性和可重复性。
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