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Biodiversity of Tricholoma matsutake (syn. T. nauseousm) and its related species based on repetitive DNA and genomics. 基于重复DNA和基因组学的松茸及其相关物种的生物多样性。
IF 1.1 4区 生物学 Pub Date : 2023-03-15 DOI: 10.1139/cjb-2022-0122
H. Murata, A. Yamada, H. Ichida, N. Nakamura, H. Neda
Tricholoma matsutake and its related species are ectomycorrhizal Agaricomycetes that produce prized mushrooms collectively called “matsutake.” These mushrooms are mainly distributed in the Northern Hemisphere. In this review, we describe both the pioneering work and recent advances in our understanding of the distribution and evolution of matsutake, with a special focus on genomic studies. DNA sequence analyses revealed that T. caligatum was the earliest species within this group, followed by T. fulvocastaneum, the cluster with T. ilkkae, T. dulciolens, and T. bakamatsutake, and finally the cluster with T. murrillianum, T. mesoamericanum, T. anatolicum, and T. matsutake. Although analyses based on mobile DNAs and whole-genome sequences revealed a similar clustering pattern, there are distinct differences in the distribution of mobile DNAs and genomic structure of T. bakamatsutake and T. matsutake. Furthermore, repetitive DNA can be used as markers to distinguish among strains and populations of T. matsutake from different geographical regions, including identifying dispersals of basidiospores. “Telomere-to-telomere genome sequencing” analyses unearthed that both T. matsutake and T. bakamatsutake underwent explosive multiplications of retrotransposons within their genomes but with different mobile DNA elements expanded between them. Contrastingly, the structure of the mating loci between T. matsutake and T. bakamatsutake is highly conserved.
松茸及其相关物种是外生菌根真菌,生产珍贵的蘑菇,统称为“松茸”。这些蘑菇主要分布在北半球。在这篇综述中,我们描述了我们对松茸分布和进化的理解的开创性工作和最新进展,特别关注基因组研究。DNA序列分析显示,杯形T.caligatum是这一群体中最早的物种,其次是富尔瓦斯坦T.fulvocastaneum,与伊尔科T.ilkkae、杜尔西奥伦斯T.dulciolens和巴卡马苏塔克T.bakamatsutake的集群,最后是与穆里利亚纳姆T.murrillianum、中美洲T.mesomericanum、锐钛矿T.anatolicum和松茸T.matsutake的集群。尽管基于移动DNA和全基因组序列的分析揭示了相似的聚类模式,但巴松和松茸的移动DNA分布和基因组结构存在明显差异。此外,重复DNA可以用作区分来自不同地理区域的松茸菌株和种群的标记,包括识别担孢子的分散体。“端粒到端粒基因组测序”分析发现,松茸和bakamatsutake在其基因组内经历了反转录转座子的爆炸性繁殖,但它们之间扩展了不同的可移动DNA元件。与此相反,松茸和巴卡松茸交配基因座的结构是高度保守的。
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引用次数: 0
Correction: Diversity among rare and common congeneric plant species from the Garry oak and Okanagan shrub-steppe ecosystems in British Columbia: implications for conservation 更正:不列颠哥伦比亚省加里橡树和奥肯那根灌木-草原生态系统中稀有和常见同属植物物种的多样性:对保护的影响
4区 生物学 Pub Date : 2023-03-01 DOI: 10.1139/cjb-2023-0012
Evan W. Hersh, Erica J. Wheeler, Brenda Costanzo, Alisa P. Ramakrishnan, Allyson E. Miscampbell, Carol Ritland, Jeannette Whitton, Jamieson C. Gorrell, William Harrower
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引用次数: 0
Quantification of camelina germination niche to combined salinity and temperature stresses using a halothermal time model 用盐温时间模型定量测定茶树萌发生态位对盐温联合胁迫的影响
IF 1.1 4区 生物学 Pub Date : 2023-03-01 DOI: 10.1139/cjb-2022-0072
Fatemeh Hosseini Sanehkoori, E. Bakhshandeh, H. Pirdashti, R. Abdellaoui, Fayçal Boughalleb, Mobina Gholamhosseini
The present work was carried out to quantify camelina germination niche under salinity and temperature ( T) stress using halotime and halothermal time models. Seed germination ( SG) time courses were recorded at six constant temperatures (5 °C, 10 °C, 15 °C, 20 °C, 25 °C, and 30 °C) and at each of the following levels of NaCl concentrations (0, 50, 100, 150, 200, and 250 mM). Halotime model could well describe the germination time courses across a range of NaCl concentrations ( R2 = 0.79–0.91). The median base NaCl concentration was approximately constant (231 mM) at suboptimal T followed by a linear decrease, with the rate of 17.4 mM °C−1, under supra-optimal T. However, the germination rate increased with increasing T, reaching its maximum at a fixed optimum temperature ( To = 20 °C), independent of NaCl concentration. Then it decreased linearly for T >  To and intercepted the x-axis at the ceiling temperature values of 33.5 °C, 30 °C, 28 °C, 25 °C, and 22 °C under 0, 50, 100, 150, and 200 mM NaCl, respectively. Consequently, based on model estimation the adequate soil T for SG of camelina should be in the range of 0.4 °C–33.5 °C, and the To is 20 °C. Besides, the salinity should be less than 231 mM.
采用盐温模型和盐温模型,对盐温胁迫下亚麻荠萌发生态位进行了定量研究。在6种恒定温度(5°C、10°C、15°C、20°C、25°C和30°C)和NaCl浓度(0、50、100、150、200和250 mM)下记录种子萌发(SG)时间过程。Halotime模型能很好地描述不同NaCl浓度下的萌发过程(R2 = 0.79 ~ 0.91)。在次优T条件下,碱基NaCl浓度的中位数近似恒定(231 mM),随后呈线性下降,在超优T条件下,其发芽率为17.4 mM°C−1。然而,随着T的增加,发芽率增加,在固定的最优温度(To = 20°C)下达到最大值,与NaCl浓度无关。在0、50、100、150和200 mM NaCl条件下,在33.5℃、30℃、28℃、25℃和22℃的上限温度下,T > To呈线性下降,并在x轴上截取。因此,根据模型估算,亚麻荠SG适宜的土壤T在0.4℃~ 33.5℃之间,To为20℃。盐度应小于231 mM。
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引用次数: 0
Soil drainage-class influences on the distribution of witness trees (1664–1700) in Wicomico County, Maryland, USA 美国马里兰州威科米科县土壤排水等级对见证树分布的影响(1664-1700
IF 1.1 4区 生物学 Pub Date : 2023-03-01 DOI: 10.1139/cjb-2022-0051
M. E. Folkoff, Daniel W. Harris, C. Briand
Given the long-term human habitation and prolific land use change trajectories in the eastern United States, few remnants of the pre-European settlement Mid-Atlantic forest remain on the Atlantic Coastal Plain. This study utilized metes and bounds witness tree locations and descriptions produced during colonial land subdivision to understand the relationships between tree types and biogeographic environments for an area on Maryland's Eastern Shore. Using correspondence analysis, we reveal habitat partitioning among witness tree species based on soil drainage characteristics, that enable the visualization of a pre-European settlement reconstructed forest. Our research finds that oak ( Quercus), most often white oak ( Quercus alba), was the dominant genus for most of the study area underlain by well-drained soils. To a much smaller extent, gums were also associated with these well-drained soils. Areas of poor drainage most often contained pine ( Pinus) and an assemblage of different oaks ( Quercus spp.). Hickory ( Carya), also noted in the witness tree record in small numbers, was found across all soil drainages.
考虑到美国东部长期的人类居住和丰富的土地利用变化轨迹,大西洋海岸平原上几乎没有欧洲人定居前大西洋中部森林的残余。这项研究利用了殖民地土地细分期间的树木位置和描述,以了解马里兰州东岸地区的树木类型和生物地理环境之间的关系。通过对应分析,我们揭示了基于土壤排水特征的见证树种之间的栖息地划分,这使得欧洲前定居点重建森林的可视化成为可能。我们的研究发现,橡树(Quercus),通常是白橡树(Querkus alba),是研究区域大部分排水良好土壤的优势属。在较小程度上,树胶也与这些排水良好的土壤有关。排水不良的地区通常含有松树(Pinus)和不同橡树(Quercus spp.)。在见证树记录中也发现了少量的山核桃(Carya),在所有土壤排水中都有发现。
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引用次数: 0
Seed germination requirements of Amaranthus retroflexus L. populations exposed to environmental factors 环境因素对反曲苋群体种子萌发的要求
IF 1.1 4区 生物学 Pub Date : 2023-02-22 DOI: 10.1139/cjb-2022-0077
Mina Safavi, M. Rezvani, F. Zaefarian, S. Golmohammadzadeh, B. Sindel
Seed germination studies are often used to predict the potential of plants to extend their global distribution. In this research, the effect of gibberellic acid (GA3) concentrations, pre-chilling, temperature, water and salt stresses, pH, high-temperature pretreatment, planting depth, and flooding on seed germination and seedling emergence of three Amaranthus retroflexus L. populations was investigated. GA3 concentration significantly affected seed germination of all three A. retroflexus populations grown under light/dark conditions. All three populations germinated under constant (10, 15, 20, 25, and 30 °C) and alternating (20/15, 25/18, and 35/25 °C (day/night)) temperatures. The optimum alternating temperature for germination of all three populations was 18/25 °C day/night. Seed germination was severely reduced under moisture and salt stresses. Seedling emergence was reduced on the soil surface by increasing the planting depth from 2.5 to 7.5 cm, and no seedlings emerged when the planting depth of seeds was more than 10 cm . The results of this research help us to understand the germination capacity and requirements of A. retroflexus in different environments and also provide information to help better control the weed.
种子萌发研究经常被用来预测植物扩大其全球分布的潜力。研究了赤霉素(GA3)浓度、预冷、温度、水盐胁迫、pH、高温预处理、种植深度和水淹对3个逆花苋(Amaranthus retroflexus L.)群体种子萌发和出苗的影响。GA3浓度显著影响光照/黑暗条件下3个逆行花群体的种子萌发。所有三个群体在恒定(10、15、20、25和30°C)和交替(20/15、25/18和35/25°C(昼/夜))温度下发芽。3个群体萌发的最佳交变温度均为18/25°C /昼夜。在水分和盐胁迫下,种子萌发严重降低。随着播种深度从2.5 cm增加到7.5 cm,土壤表面出苗减少,种子播种深度超过10 cm时不出苗。本研究结果有助于我们了解不同环境下黄花苜蓿的萌发能力和对黄花苜蓿的需求,并为更好地防治黄花苜蓿提供信息。
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引用次数: 0
Organically grown cannabis (Cannabis sativa L.) plants contain a diverse range of culturable epiphytic and endophytic fungi in inflorescences and stem tissues 有机种植的大麻(cannabis sativa L.)植物在花序和茎组织中含有多种可培养的附生真菌和内生真菌
IF 1.1 4区 生物学 Pub Date : 2023-02-18 DOI: 10.1139/cjb-2022-0116
Z. Punja, C. Scott
We investigated the diversity of fungal species present on inflorescences as epiphytes and in stem tissues as endophytes in flowering plants of cannabis grown organically in British Columbia during 2019-2021. Fresh and dried inflorescence samples were obtained at various times during production while stems were obtained at harvest. Fungal species in the air were assessed by exposing Petri dishes containing potato dextrose agar + streptomycin sulphate for 1 hr in the growing environment while soil samples were dilution-plated to assess soil fungal diversity. Colonies were identified from PCR-derived sequences of the ITS1-5.8S- ITS2 region of rDNA. Twenty-nine species in 26 genera were recovered from inflorescences and 17 species in 11 genera originated from stem tissues. Approximately 96 % of species found on inflorescences were present in air and 45 % were present in organic soil. The fungi comprised plant pathogens, saprophytes, and opportunistic human pathogens. A large proportion of the species found in air and soil in organic facilities are present on cannabis inflorescences, where they may increase total colony- forming units and negatively affect product quality. Some species could contribute to allergies or secondary infections in humans. The potential benefits of endophytes within organically grown cannabis plants remain unexplored.
研究了2019-2021年不列颠哥伦比亚省有机种植的大麻开花植物花序上作为附生植物和茎组织中作为内生植物的真菌种类的多样性。在生产期间的不同时间获得新鲜和干燥的花序样品,而在收获时获得茎。通过将含有马铃薯葡萄糖琼脂+硫酸链霉素的培养皿置于生长环境中1小时,并对土壤样品进行稀释,以评估土壤真菌多样性,从而评估空气中的真菌种类。从rDNA的ITS1-5.8S- ITS2区域的pcr衍生序列中鉴定菌落。从花序中分离得到26属29种,从茎组织分离得到11属17种。在花序上发现的大约96%的物种存在于空气中,45%存在于有机土壤中。真菌包括植物病原体、腐生菌和机会性人类病原体。在有机设施的空气和土壤中发现的大部分物种存在于大麻花序上,在那里它们可能增加总菌落形成单位并对产品质量产生负面影响。有些物种可能会导致人类过敏或继发感染。内生菌在有机种植的大麻植物中的潜在益处仍未被探索。
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引用次数: 2
Pollination ecology of the early-spring-blooming dioecious shrub Eurya japonica (Pentaphylacaceae) 早春开花的雌雄异株灌木芡实的授粉生态学研究
IF 1.1 4区 生物学 Pub Date : 2023-02-15 DOI: 10.1139/cjb-2022-0083
Midzuho Tatsuno, M. Sueyoshi, N. Osawa
While the majority of angiosperm plants have hermaphrodite flowers where a single pollinator visit can achieve both pollen removal and deposition, 5–6% of angiosperms including zoophilous species are dioecious, necessitating pollen transport from male plants to females. As such, dioecy is considered less adaptive under low temperature conditions that tend to restrict or lower potential pollinator activity. Interestingly, however, a number of dioecious, zoophilous plants including Eurya japonica Thunb. (Pentaphylacaceae) bloom in low temperature seasons. This study made a quantitative assessment of flower visitors/pollinators of E. japonica blooming in early spring in central Japan. A total of 15 families in 4 orders of insects were recorded on both pistillate and staminate flowers of E. japonica, of which Diptera (Empididae and Chironomidae, in particular) and Hymenoptera were predominant regardless of site/year. Hymenopteran visitors were more active at higher temperatures, while dipterans were observed even at low temperatures. The fruiting rate and the number of seeds were greater at the site where dipteran visitors were more abundant. The present study suggests that the system of multi-taxa, Diptera-dominated pollination may play an important role in the reproductive ecology of dioecious plant species, in particular those flowering at low temperatures.
虽然大多数被子植物都有雌雄同体的花,一次传粉者的造访可以实现花粉的去除和沉积,但包括浮游动物物种在内的5%至6%的被子植物是雌雄异株的,需要将花粉从雄性植物输送到雌性植物。因此,在往往限制或降低潜在传粉昆虫活动的低温条件下,雌雄异株被认为适应性较差。然而,有趣的是,许多雌雄异株、浮游动物的植物,包括日本Eurya japonica Thumb。(五门科)在低温季节开花。本研究对日本中部早春盛开的E.japonica的访花者/传粉者进行了定量评估。在E.japonica的雌花和雄花上共记录了4目15个昆虫科,其中无论地点/年份,都以直翅目(尤其是Empididae和Chironomidae)和膜翅目为主。膜翅目的访客在高温下更活跃,而即使在低温下也能观察到夜蛾。在双盲访客较多的地方,结果率和种子数量都较大。本研究表明,以双翅目为主的多分类群授粉系统可能在雌雄异株植物的生殖生态中发挥重要作用,尤其是那些在低温下开花的植物。
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引用次数: 0
Delayed self-fertilization and chemical analysis of floral nectar of a perennial relative of the tomato and potato from Mexico 墨西哥番茄和马铃薯一个多年生亲缘植物花蜜的延迟自受精和化学分析
IF 1.1 4区 生物学 Pub Date : 2023-02-07 DOI: 10.1139/cjb-2022-0106
T. Mione, Paul R. Wilson, Julia E. Kudewicz, S. Chakraborty
We studied the floral reproductive biology and nectar chemistry of Jaltomata grandiflora (Solanaceae), an apparently rare perennial of Michoacán, Mexico. During Day 1 flowers are pistillate (stigma receptive, anthers not yet presenting pollen); flowers close for the night. Early in the morning of Day 2 the corolla re-opens, stamens elongate to five times their earlier length, and anthers dehisce; the dehisced anthers remain about two mm from the stigma for much of Day 2. In the afternoon of Day 2 the corolla again closes, the corolla-androecium abscises, and only then can pollen be seen on the stigma. Protogyny and herkogamy likely promote outcrossing during Days 1 and 2, respectively. Autonomous self-pollination takes place at the end of the corolla’s life and allows fruit and seed production in the absence of pollinators but results in fruits that are lighter and contain fewer seeds than fruits resulting from manual self-pollinations. Carbohydrates from floral nectar samples were separated and quantified using hydrophilic interaction liquid chromatography coupled with corona charged aerosol detection. In nectar, mean sucrose concentration (0.482 mg/mg nectar), is about ten and five times higher than glucose (0.043 mg/mg nectar) and fructose (0.095 mg/mg nectar) concentrations.
我们研究了墨西哥米却肯一种罕见的多年生植物大花茄科植物的花繁殖生物学和花蜜化学。在第1天,花为雌蕊状(柱头可接受,花药尚未呈现花粉);花闭了一夜。第2天清晨,花冠重新开放,雄蕊伸长到其早期长度的五倍,花药开裂;在第2天的大部分时间里,开裂的花药距离柱头保持约2毫米。第2天下午,花冠再次闭合,雄蕊座脱落,柱头上才能看到花粉。在第1天和第2天,原雌生殖和两性生殖可能分别促进异交。自主自花授粉发生在花冠寿命结束时,在没有授粉者的情况下可以产生果实和种子,但与人工自花授粉的果实相比,果实更轻,种子更少。使用亲水相互作用液相色谱法和电晕气溶胶检测法对花蜜样品中的碳水化合物进行分离和定量。在花蜜中,平均蔗糖浓度(0.482毫克/毫克花蜜)大约是葡萄糖(0.043毫克/毫克甘露)和果糖(0.095毫克/毫克蜂蜜)浓度的十到五倍。
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引用次数: 0
Susceptibility of endangered Cornus florida (Eastern flowering dogwood) to the introduced fungal pathogen Discula destructiva (dogwood anthracnose) in the Canadian Carolinian forest: Insights from environmental, ecological, and population genetics assessments 加拿大卡罗莱纳森林濒危山茱萸对引进的山茱萸炭疽病的易感性:来自环境、生态和群体遗传学评估的见解
IF 1.1 4区 生物学 Pub Date : 2023-02-06 DOI: 10.1139/cjb-2022-0088
Emily Mitchell, Sage Fleming, M. Dorken, J. Freeland
Forest fragmentation and introduced pathogens are negatively impacting trees and forests globally, including the Carolinian forest of southern Ontario, Canada. Multiple species-at-risk live in this threatened but biodiverse forest, including the endangered Cornus florida (Eastern flowering dogwood), which is now limited to fragmented woodlots, and has been decimated by the introduced fungal pathogen Discula destructiva (dogwood anthracnose). Ongoing management of C. florida in Canada is challenged by multiple knowledge gaps, two of which we aimed to address in this study. We first evaluated the association between anthracnose disease prevalence and a suite of ecological and environmental variables across 21 sites. Across our sites, larger trees tended to have the highest disease incidence, and trees on shallow slopes had the most crown dieback. We then quantified genetic diversity and gene flow, and found that genetic structure has not been substantially impacted by habitat fragmentation, although dispersal typically covers short distances. However, genetic diversity is relatively low in smaller populations, and in younger trees. Localized dispersal and eroding genetic diversity may limit future adaptation and hence exacerbate population declines. We recommend that managers prioritize plantings in small populations, avoid shallow slopes, and track younger trees to evaluate age-related mortality.
森林破碎化和引入的病原体对全球的树木和森林产生了负面影响,包括加拿大安大略省南部的卡罗莱纳森林。许多濒危物种生活在这片受到威胁但生物多样性丰富的森林中,包括濒临灭绝的佛罗里达山茱萸(东部开花茱萸),它现在仅限于碎片化的林地,并已被引入的真菌病原体Discula destructiva(山茱萸炭疽病)大量消灭。在加拿大,C. florida的持续管理受到多个知识空白的挑战,其中两个我们旨在在本研究中解决。我们首先评估了21个站点的炭疽病患病率与一系列生态和环境变量之间的关系。在我们的站点中,较大的树木往往有最高的疾病发病率,浅坡上的树木有最多的树冠枯梢病。然后,我们量化了遗传多样性和基因流动,发现遗传结构没有受到栖息地破碎化的实质性影响,尽管分散通常覆盖短距离。然而,在较小的种群和较年轻的树木中,遗传多样性相对较低。局部扩散和遗传多样性的侵蚀可能限制未来的适应,从而加剧种群下降。我们建议管理人员优先在小种群中种植,避免浅坡,并跟踪年轻树木以评估与年龄相关的死亡率。
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引用次数: 0
Pollination systems and nectar rewards in four Andean species of Salvia (Lamiaceae) 安第斯山脉四种鼠尾草的授粉系统和花蜜回报
IF 1.1 4区 生物学 Pub Date : 2023-02-06 DOI: 10.1139/cjb-2022-0091
Alexandria Saravia, S. Benítez-Vieyra, Omar N. Urquizo, H. Niemeyer, Carlos Fernando Pinto
Adaptation to the most effective pollinator is often conceived as the primary explanation of widespread convergence in flower phenotypes. However, specialization does not exclude the presence of other floral visitors, which may contribute to plant reproduction. Here we combined observations about pollinators visitation rates and effectiveness with nectar secretion dynamics and sugar composition in four Andean Salvia species from Bolivia. The study revealed a wider diversity than expected both in pollination systems and in nectar strategies. While S. haenkei and S. stachydifolia were almost exclusively pollinated by either hummingbirds or bees, respectively, mixed pollination was found in S. orbignaei, a species previously described as hummingbird-pollinated. Salvia personata was exclusively pollinated by syrphid flies. Differences in nectar volume and sugar concentration were found between insect-pollinated species and mixed- or hummingbird-pollinated species. However, the four Salvia species displayed different strategies regarding nectar sugar composition, with sucrose-rich nectar in S. orbignaei, glucose-rich nectar in S. haenkei and S. stachydifolia, and glucose-rich nectar lacking fructose in S. personata, suggesting an adaptation to syrphid fly pollination. Our results provide a clearer picture of floral trait evolution in Salvia and highlight the contribution of some pollinators different from those expected according to the floral syndromes.
对最有效的传粉昆虫的适应通常被认为是花朵表型广泛趋同的主要解释。然而,专业化并不排除其他花卉访客的存在,这可能有助于植物繁殖。在这里,我们结合了对玻利维亚四种安第斯鼠尾草传粉昆虫造访率和有效性的观察,以及花蜜分泌动态和糖成分。这项研究揭示了授粉系统和花蜜策略的多样性比预期的要大。虽然S.haenkee和S.stachydifolia分别几乎完全由蜂鸟或蜜蜂授粉,但在S.orbinaei中发现了混合授粉,该物种以前被称为蜂鸟授粉。鼠尾草完全由同卵蝇授粉。昆虫授粉物种与混合授粉或蜂鸟授粉物种在花蜜量和糖浓度方面存在差异。然而,这四种鼠尾草在花蜜糖成分方面表现出不同的策略,其中圆叶鼠尾草富含蔗糖的花蜜,海葵和水仙花鼠尾草富含葡萄糖的花蜜,以及人物花鼠尾草缺乏果糖的富含葡萄糖的蜜浆,这表明它们对同食蝇授粉的适应。我们的研究结果更清楚地描述了鼠尾草的花特征进化,并强调了一些不同于根据花综合征预期的传粉昆虫的贡献。
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引用次数: 1
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Botany
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