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I2-catalyzed tandem sp3 C–H oxidation and annulation of aryl methyl ketones with amidoximes for the synthesis of 5-aroyl-1,2,4-oxadiazoles† I2 催化串联 sp3 C-H 氧化和芳基甲基酮与脒肟的环化反应以合成 5-芳基-1,2,4-恶二唑。
IF 2.9 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-18 DOI: 10.1039/d4ob01221f
A metal-free, iodine-catalyzed protocol has been developed for constructing biologically significant 5-aroyl 1,2,4-oxadiazole scaffolds using aryl methyl ketones and amidoximes. The strategy produces structurally diverse 5-aroyl 1,2,4-oxadiazoles in good to excellent yields, with a broad substrate scope that includes drug derived substrates. The reaction proceeds through iodine/DMSO-mediated oxidation of aryl methyl ketones, followed by imine formation and subsequent cyclization to yield the desired products. Additionally, this protocol has successfully produced the carbonyl analogs of ataluren and tioxazafen and has facilitated some intriguing late-stage transformations.
我们开发了一种无金属、碘催化的方案,利用芳基甲基酮和脒肟构建具有生物学意义的 5-芳酰基 1,2,4-恶二唑支架。该策略能生产出结构多样的 5-芳酰基 1,2,4-恶二唑,收率从良好到极佳,底物范围广泛,包括药物衍生底物。该反应通过碘/二甲基亚砜介导的芳基甲基酮氧化反应进行,然后形成亚胺,再环化生成所需的产物。此外,该方案还成功制备出了阿他脲和噻噁唑吩的羰基类似物,并促进了一些有趣的后期转化。
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引用次数: 0
Regulating H2S release from self-assembled peptide H2S-donor conjugates using cysteine derivatives 利用半胱氨酸衍生物调节自组装肽 H2S-供体共轭物中 H2S 的释放
IF 3.2 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-18 DOI: 10.1039/d4ob01148a
Zhao Li, Marius Thomas, Christian M. Berač, Oliver S. Stach, Pol Besenius, John B. Matson
Self-assembled peptides provide a modular and diverse platform for drug delivery, and innovative delivery methods are needed for delivery of hydrogen sulfide (H2S), an endogenous signaling molecule (gasotransmitter) with significant therapeutic potential. Of the available types of H2S donors, peptide/protein H2S donor conjugates (PHDCs) offer significant versatility. Here we discuss the design, synthesis, and in-depth study of a PHDC containing three covalently linked components: a thiol-triggered H2S donor based on an S-aroylthiooxime (SATO), a GFFF tetrapeptide, and a tetraethylene glycol (TEG) dendron. Conventional transmission electron microscopy showed that the PHDC self-assembled into spherical structures without heat or stirring, but it formed nanofibers with gentle heat (37 °C) and stirring. Circular dichroism (CD) spectroscopy data collected during self-assembly under nanofiber-forming conditions suggested an increase in β-sheet character and a decrease in organization of the SATO units. Release of H2S from the nanofibers was studied through triggering with various thiols. The release rate and total amount of H2S released over both short (5 h) and long (7 d) time scales varied with the charge state: negatively charged and zwitterionic thiols (e.g., Ac-Cys-OH and H-Cys-OH) triggered release slowly while a neutral thiol (Ac-Cys-OMe) showed ∼10-fold faster release, and a positively charged thiol (H-Cys-OMe) triggered H2S release nearly 50-fold faster than the negatively charged thiols. CD spectroscopy studies monitoring changes in secondary structure over time during H2S release showed similar trends. This study sheds light on the driving forces behind self-assembling nanostructures and offers insights into tuning H2S release through thiol charge state modulation.
自组装肽为药物输送提供了一个模块化和多样化的平台,而硫化氢(H2S)是一种具有巨大治疗潜力的内源性信号分子(气体递质),因此需要创新的输送方法来输送硫化氢。在现有的 H2S 给体类型中,肽/蛋白质 H2S 给体共轭物(PHDCs)具有显著的多功能性。在此,我们讨论了一种 PHDC 的设计、合成和深入研究,该 PHDC 包含三种共价连接的成分:基于 S-aroylthiooxime (SATO)的硫醇触发 H2S 给体、GFFF 四肽和四甘醇(TEG)树枝状化合物。传统的透射电子显微镜显示,PHDC 无需加热或搅拌就能自组装成球形结构,但在轻微加热(37 °C)和搅拌的情况下就能形成纳米纤维。在纳米纤维形成条件下自组装过程中收集的圆二色性(CD)光谱数据表明,β-片状特征增加,SATO 单元的组织减少。通过使用各种硫醇进行触发,研究了纳米纤维释放 H2S 的情况。在短(5 小时)和长(7 天)时间范围内,H2S 的释放速度和释放总量随电荷状态而变化:带负电荷和齐聚离子硫醇(如 Ac-Cys-OH 和 H-Cys-OH)触发释放的速度较慢,而中性硫醇(Ac-Cys-OMe)触发释放的速度快 10 倍;带正电荷的硫醇(H-Cys-OMe)触发释放 H2S 的速度比带负电荷的硫醇快近 50 倍。监测 H2S 释放过程中二级结构随时间变化的 CD 光谱研究也显示了类似的趋势。这项研究揭示了自组装纳米结构背后的驱动力,并为通过调节硫醇电荷状态来调整 H2S 释放提供了启示。
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引用次数: 0
A molecular electron density theory study of the bimolecular nucleophilic substitution reactions on monosubstituted methyl compounds† 单取代甲基化合物双分子亲核置换反应的分子电子密度理论研究。
IF 2.9 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-18 DOI: 10.1039/d4ob01113a
The nucleophilic substitution reactions involving methyl monosubstituted compounds have been studied within the Molecular Electron Density Theory (MEDT) at the ωB97X-D/6-311+G(d,p) computational level in DMSO. This study aims to characterize the electronic nature of the transition state structures (TSs) involved in the so-called SN2 and SNi reactions. Both electron localization function and atom-in-molecules topological analyses indicate that the TSs involved in these nucleophilic substitutions can be described as a central methyl CH3+ carbocation, which is strongly stabilized by the presence of two neighbouring nucleophilic species through electron density transfer. This MEDT study establishes a significant electronic similarity between the so-called SN1 and SN2 reactions. Due to the weak electrophilic character of the methyl tetrahedral carbons, the departure of the leaving group should be expected with the approach of the nucleophile. However, while along the SN1 reactions, the strong stabilization of the tertiary carbocation does not demand the participation of the nucleophile, along the SN2 and SNi reactions involving primary tetrahedral carbons, the nucleophiles should participate in the reaction to stabilize the unstable methyl carbocation.
在二甲基亚砜(DMSO)的ωB97X-D/6-311+G(d,p)计算水平上,分子电子密度理论(MEDT)研究了涉及甲基单取代化合物的亲核取代反应。本研究旨在描述所谓 SN2 和 SNi 反应所涉及的过渡态结构(TSs)的电子性质。电子定位函数和原子内分子拓扑分析表明,参与这些亲核取代反应的过渡态结构可以描述为一个中心甲基 CH3+ 碳化物,通过电子密度转移,两个相邻亲核物种的存在有力地稳定了该碳化物。这项 MEDT 研究确定了所谓的 SN1 和 SN2 反应之间显著的电子相似性。由于甲基四面体碳具有弱亲电性,随着亲核物的接近,离去基团也会离开。不过,虽然在 SN1 反应中,叔碳位的强稳定并不需要亲核剂的参与,但在涉及伯四面体碳的 SN2 和 SNi 反应中,亲核剂应参与反应以稳定不稳定的甲基碳位。
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引用次数: 0
BODIPYs α-appended with distyryl-linked aryl bisboronic acids: single-step cell staining and turn-on fluorescence binding with d-glucose† BODIPYs α-与二芳基连接的芳基双硼酸:单步细胞染色和与 D-葡萄糖的荧光结合。
IF 2.9 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-18 DOI: 10.1039/d4ob01013b
Small-molecule sensors that are selective for particular sugars are rare. The synthesis of BODIPYs appended with two boronic acid units is reported, alongside cellular staining/labelling and turn-on fluorescence binding data for carbohydrates. The structural frameworks were designed using computational methods, leaning on the chelation characteristics of bis(boronic acids) and the photophysical properties of BODIPYs. Selective binding to glucose is demonstrated via emission and absorption methods, and the challenges of using NMR data for studying carbohydrate binding are discussed. Furthermore, crystal structures, cell permeability and imaging properties of the BODIPYs appended with two boronic acid units are described. This work presents boronic-acid-appended BODIPYs as a potential framework for tunable carbohydrate sensing and chemical biology staining.
对特定糖类具有选择性的小分子传感器并不多见。本研究报告了添加了两个硼酸单元的 BODIPYs 的合成过程,以及针对碳水化合物的细胞染色/标记和开启荧光结合数据。这些结构框架是通过计算方法,利用双(硼酸)的螯合特性和 BODIPYs 的光物理特性设计出来的。通过发射和吸收方法证明了与葡萄糖的选择性结合,并讨论了使用核磁共振数据研究碳水化合物结合所面临的挑战。此外,还介绍了添加了两个硼酸单元的 BODIPYs 的晶体结构、细胞渗透性和成像特性。这项研究将硼酸添加的 BODIPYs 作为一种潜在的框架,用于可调碳水化合物传感和化学生物学染色。
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引用次数: 0
Electrochemical sulfonylation/Truce–Smiles rearrangement of N-allylbenzamides: toward sulfone-containing β-arylethylamines and Saclofen analogues N-烯丙基苯甲酰胺的电化学磺化/云杉-斯迈尔斯重排:向含砜的β-芳基乙胺和沙氯芬类似物发展
IF 3.2 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-18 DOI: 10.1039/d4ob01327a
Sébastien Meyer, Alexandre Neuhut, Aurélie Claraz
The β-arylethylamine pharmacophore is commonly found in medications for central nervous system disorders, prompting the need for safe and efficient methods to endow this motif with relevant functional groups for drug discovery. In this context, herein, we have established electrochemical radical sulfonylation reactions of N-allylbenzamides followed by Truce–Smiles rearrangement to produce sulfone- and sulfonate ester-containing β-arylethylamines. Electricity enables this transformation to occur under mild and oxidant-free conditions. Simple sources of sulfonyl radicals and SO2 surrogates were employed to form sulfones and sulfonate esters, respectively. This practical and operationally robust method exhibited a broad substrate scope with good to high yields. The prospective pharmaceutical utility of the process was further demonstrated by removing the N-protecting groups and hydrolysing the sulfonate ester moiety to provide γ-sulfonyl-β-arylamines and Saclofen.
在治疗中枢神经系统疾病的药物中,β-芳基乙胺药理结构十分常见,因此需要采用安全高效的方法为这一基团赋予相关官能团,以促进药物发现。在此背景下,我们建立了 N-烯丙基苯甲酰胺的电化学自由基磺酰化反应,然后通过 Truce-Smiles 重排生成含砜和磺酸酯的β-芳基乙胺。电能使这种转化在温和、无氧化剂的条件下进行。利用简单的磺酰基和二氧化硫代用品分别形成砜和磺酸酯。这种实用且操作性强的方法具有广泛的底物范围和良好的产率。通过移除 N 保护基团和水解磺酸酯基团,制备出 γ-磺酰基-β-芳胺和沙氯芬,进一步证明了该方法在制药方面的应用前景。
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引用次数: 0
A thiol-selective and acid-stable protein modification strategy using an electron-deficient yne reagent† 使用缺电子炔试剂的巯基选择性和酸稳定性蛋白质修饰策略。
IF 2.9 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-18 DOI: 10.1039/d4ob01037j
A protein modification strategy was developed based on a thiol–yne click reaction using an electron-deficient yne reagent. This approach demonstrated exceptional selectivity towards thiols and exhibited rapid kinetics, resulting in conjugates with superior acid stability. The conjugation of IgG with an indole-derived fluorophore was achieved for the imaging of PD-L1 in cancer cells.
利用缺电子炔试剂进行硫醇-炔单击反应,开发出一种蛋白质修饰策略。这种方法对硫醇具有极高的选择性,并表现出快速的动力学特性,从而产生了具有极佳酸稳定性的共轭物。实现了 IgG 与吲哚衍生荧光团的共轭,用于癌细胞中 PD-L1 的成像。
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引用次数: 0
Rapid diazotransfer for selective lysine labelling 用于选择性赖氨酸标记的快速重氮转移
IF 3.2 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-16 DOI: 10.1039/d4ob01094a
Susannah H. Calvert, Tomasz Pawlak, Gary Hessman, Joanna F. McGouran
Azide functionalization of protein and peptide lysine residues allows selective bioorthogonal labeling to introduce new, site selective functionaltiy into proteins. Optimised diazotransfer reactions under mild conditions allow aqueous diazotransfer to occur in just 20 min at pH 8.5 on amino acid, peptide and protein targets. In addition, conditons can be modified to selectively label a single lysine residue in both protein targets investigated. Finally, we demonstrate selective modification of proteins containing a single azidolysine using copper(I)-catalyzed triazole formation.
对蛋白质和肽的赖氨酸残基进行叠氮官能化,可以选择性地进行生物正交标记,从而在蛋白质中引入新的位点选择性官能团。经过优化的重氮转移反应条件温和,在 pH 值为 8.5 的条件下,氨基酸、肽和蛋白质靶标的水性重氮转移反应只需 20 分钟即可完成。此外,还可以改变条件,选择性地标记所研究的两种蛋白质靶标中的单个赖氨酸残基。最后,我们展示了利用铜(I)催化的三唑形成对含有单一叠氮多赖氨酸的蛋白质进行选择性修饰。
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引用次数: 0
Tetraasteranes as homologues of cubanes: effective scaffolds for drug discovery 作为立方烷同源物的四烷烃:药物发现的有效支架
IF 3.2 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-12 DOI: 10.1039/d4ob01043d
Xiaokun Zhang, Chaochun Wei, Keli Zong, Qidi Zhong, Hong Yan
Classical hydrocarbon scaffolds have long assisted in bringing new molecules to the market for a variety of applications, but one notable omission is that of tetraasteranes, which are homologues of cubanes belonging to a class of polycyclic hydrocarbon cage compounds. Tetraasteranes exhibit potential as scaffolds in drug discovery due to their identical cyclobutane structures and rigid conformation resembling cubanes. Based on the studies of the physical and chemical properties of tetraasteranes by density functional theory, three series of compounds were designed as homologues of cubanes by the substitution of cubane scaffolds in pharmaceuticals with tetraasteranes. Their potential for pharmaceutical applications was evaluated in silico by molecular docking and dynamics simulations. Their pharmacokinetic and physicochemical properties were studied by the ADMET (absorption, distribution, metabolism, excretion, and toxicity) analysis. The results indicate that tetraasteranes may be scaffolds as novel bioisosteres of cubanes, as well as hydrogen bond donors or acceptors, which enhance the affinity between ligands and receptors with more stable binding behavior and feasible tolerability in ADMET. All these findings provide new opportunities for tetraasteranes to serve as effective pharmaceutical scaffolds for drug discovery and to accelerate the drug discovery process by repurposing both new and old commercial compounds.
长期以来,经典的碳氢化合物支架有助于将新分子推向市场,用于多种用途,但其中一个明显的疏忽是四碳烷,它是立方烷的同源物,属于一类多环碳氢化合物笼状化合物。四甾烷具有相同的环丁烷结构和类似立方烷的刚性构象,因此具有作为药物研发支架的潜力。基于密度泛函理论对四元甾烷物理和化学特性的研究,通过用四元甾烷取代药物中的立方烷支架,设计了三个系列的化合物作为立方烷的同系物。通过分子对接和动力学模拟对这些化合物的医药应用潜力进行了硅学评估。通过 ADMET(吸收、分布、代谢、排泄和毒性)分析研究了它们的药代动力学和理化性质。结果表明,四碳烷可以作为立方烷的新型生物异构体支架,也可以作为氢键供体或受体,从而增强配体与受体之间的亲和力,并具有更稳定的结合行为和在 ADMET 中可行的耐受性。所有这些发现为四元甾烷提供了新的机遇,使其成为药物发现的有效药物支架,并通过对新旧商业化合物的再利用,加速药物发现过程。
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引用次数: 0
A novel photosensitizer based on hypocrellin B activated by cysteine over-expressed in cancer cells† 一种新型光敏剂,基于半胱氨酸在癌细胞中过度表达而激活的次黄嘌呤 B。
IF 2.9 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-11 DOI: 10.1039/d4ob01288g
l-Cysteine (Cys)-activatable photosensitizer 3 was designed and synthesized based on hypocrellin B (1). Cys is a novel tumor-associated biomarker. 3 exhibited negligible photosensitizing ability without Cys. However, when 1 was released from 3 by reaction with Cys, the photosensitizing activity was restored. Furthermore, 3 showed selective and effective photo-cytotoxicity against only cancer cells such as HeLa and A549 cells that highly express Cys when irradiated with 660 nm light, which is inside the phototherapeutic window.
以次芸苔素 B (1) 为基础,设计并合成了 L-半胱氨酸(Cys)可活化光敏剂 3。Cys 是一种新型的肿瘤相关生物标记物。在没有 Cys 的情况下,3 的光敏能力可以忽略不计。然而,当 1 与 Cys 反应从 3 中释放出来时,光敏活性就恢复了。此外,在光治疗窗口内的 660 纳米光照射下,3 只对高表达 Cys 的 HeLa 和 A549 等癌细胞表现出选择性和有效的光毒性。
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引用次数: 0
“Cation Pool” generated from DMSO and 1,2-dihaloethanes and their application in organic synthesis 由二甲基亚砜和 1,2-二卤乙烷生成的 "阳离子池 "及其在有机合成中的应用。
IF 2.9 3区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2024-09-11 DOI: 10.1039/d4ob00740a
Conventionally, carbenium and onium ions are prepared in the presence of nucleophiles due to their instability and transient nature. The nucleophiles that are unstable or inert to the reaction media cannot be used for reaction with the cationic species to access the desired compounds. To overcome these limitations, developing methods for generating organic cations irreversibly in the absence of nucleophiles is essential. The “cation pool” method developed by Yoshida and co-workers stands out as a reliable strategy to generate and accumulate the reactive cations in solution in the absence of nucleophiles. The cation pool method involves the electrolysis of the substrate in the absence of nucleophiles, usually at low temperature. Moreover, the generation of halogen and chalcogen cations through electrolysis needs extra care because of their low stability. This review covers our effort in generating and accumulating halogen cations as “cation pools”, most importantly by simply heating a mixture of dimethyl sulfoxide (DMSO) and 1,2-dihaloethane (DXE, X = Cl, Br, I), and their use in the halogenation reactions. Furthermore, condition-dependent Pummerer-type fragmentations of DMSO-stabilized halogen cations to methyl(methylene)sulfonium ions and chlorodimethylsulfonium ions for synthetic applications are described.
由于硒和锇离子的不稳定性和瞬时性,它们通常是在有亲核物存在的情况下制备的。对反应介质不稳定或惰性的亲核物不能用于与阳离子物种发生反应,以获得所需的化合物。为了克服这些限制,必须开发出在无亲核物的情况下不可逆地生成有机阳离子的方法。Yoshida 及其合作者开发的 "阳离子池 "方法是一种可靠的策略,可以在没有亲核物的情况下在溶液中生成和积累活性阳离子。阳离子池法涉及在无亲核物的情况下,通常在低温下对底物进行电解。此外,通过电解生成卤素阳离子和铬阳离子需要格外小心,因为它们的稳定性较低。本综述介绍了我们在生成和积累卤素阳离子作为 "阳离子池 "方面所做的努力,其中最重要的是通过简单加热二甲基亚砜(DMSO)和 1,2-二卤乙烷(DXE,X = Cl、Br、I)的混合物,以及它们在卤化反应中的应用。此外,还介绍了 DMSO 稳定卤素阳离子在合成应用中与条件相关的 Pummerer 型片段生成甲基(亚甲基)锍离子和氯二甲基锍离子的情况。
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引用次数: 0
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Organic & Biomolecular Chemistry
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