Electromagnetic wave absorbers (EWAs) exert considerable influence in the information age, and polarization relaxation has been vital to regulating the electromagnetic response toward high-performance EWAs. However, polarization relaxation still confronts several hurdles in understanding the intrinsic mechanisms and modulating the performance. In view of this, we first introduce the main dielectric polarizations including dipole polarization, interface polarization, and defect-induced polarization. The concepts of corresponding polarization relaxations and their correlations are then clarified, and the influencing factors of polarization relaxations in EWAs are elucidated. Subsequently, we detail the tailoring strategies of dielectric polarization from the perspectives of components modulation and structure regulation, together with state-of-the-art achievements. Finally, the challenges and future exploration directions for dielectric EWAs are proposed.
{"title":"Insights into polarization relaxation of electromagnetic wave absorption","authors":"Shijie Zhang, Di Lan, Jiajun Zheng, Zhiwei Zhao, Zirui Jia, Guanglei Wu","doi":"10.1016/j.xcrp.2024.102206","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102206","url":null,"abstract":"<p>Electromagnetic wave absorbers (EWAs) exert considerable influence in the information age, and polarization relaxation has been vital to regulating the electromagnetic response toward high-performance EWAs. However, polarization relaxation still confronts several hurdles in understanding the intrinsic mechanisms and modulating the performance. In view of this, we first introduce the main dielectric polarizations including dipole polarization, interface polarization, and defect-induced polarization. The concepts of corresponding polarization relaxations and their correlations are then clarified, and the influencing factors of polarization relaxations in EWAs are elucidated. Subsequently, we detail the tailoring strategies of dielectric polarization from the perspectives of components modulation and structure regulation, together with state-of-the-art achievements. Finally, the challenges and future exploration directions for dielectric EWAs are proposed.</p>","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"31 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142264640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-18DOI: 10.1016/j.xcrp.2024.102209
Ding Ma, Ye Wang, Michele L. Sarazen, Cyrille Boyer, Tomonori Saito, Haohong Duan, Wenyu Huang
The surge in plastic waste has become one of the most pressing environmental challenges of our time. Traditional methods of plastic disposal, such as landfilling and incineration, pose significant environmental hazards, whereas mechanical recycling processes often yield downgraded materials with limited applications. Recent advancements in catalytic science have led to the development of innovative catalytic systems enabling the efficient deconstruction and upcycling of plastic polymers. In this Voices article, we ask a panel of experts worldwide: how can catalysis address this plastic crisis?
{"title":"Catalysis for plastic deconstruction and upcycling","authors":"Ding Ma, Ye Wang, Michele L. Sarazen, Cyrille Boyer, Tomonori Saito, Haohong Duan, Wenyu Huang","doi":"10.1016/j.xcrp.2024.102209","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102209","url":null,"abstract":"<p>The surge in plastic waste has become one of the most pressing environmental challenges of our time. Traditional methods of plastic disposal, such as landfilling and incineration, pose significant environmental hazards, whereas mechanical recycling processes often yield downgraded materials with limited applications. Recent advancements in catalytic science have led to the development of innovative catalytic systems enabling the efficient deconstruction and upcycling of plastic polymers. In this Voices article, we ask a panel of experts worldwide: how can catalysis address this plastic crisis?</p>","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"37 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142264639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-18DOI: 10.1016/j.xcrp.2024.102213
Garnet-type solid electrolytes with high chemical and electrochemical stabilities are uniquely suitable for high-voltage operation but suffer from poo…
石榴石型固体电解质具有很高的化学和电化学稳定性,非常适合高压操作,但也存在一些问题。
{"title":"4.8-V all-solid-state garnet-based lithium-metal batteries with stable interface","authors":"","doi":"10.1016/j.xcrp.2024.102213","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102213","url":null,"abstract":"Garnet-type solid electrolytes with high chemical and electrochemical stabilities are uniquely suitable for high-voltage operation but suffer from poo…","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"20 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142264636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-16DOI: 10.1016/j.xcrp.2024.102211
Chenggang Xi, Yuefeng Ma, Matthew B. Amrofell, Tae Seok Moon
Tryptophan and its metabolites, produced by the gut microbiota, are pivotal for human physiological and mental health. Yet, quantifying these structurally similar compounds with high specificity remains a challenge, hindering point-of-care diagnostics and targeted therapeutic interventions. Leveraging the innate specificity and adaptability of biological systems, we present a biosensing approach capable of identifying specific metabolites in complex contexts with minimal cross-activity. This study introduces a generalizable strategy that combines evolutionary analysis, key ligand-binding residue identification, and mutagenesis scanning to pinpoint ligand-specific transcription factor variants. Furthermore, we uncover regulatory mechanisms within uncharacterized ligand-binding domains, whether in homodimer interfaces or monomers, through structural prediction and ligand docking. Notably, our “plug-and-play” strategy broadens the detection spectrum, enabling the exclusive biosensing of indole-3-acetic acid (an auxin), tryptamine, indole-3-pyruvic acid, and other tryptophan derivatives in engineered probiotics. This groundwork paves the way to create highly specific transcriptional biosensors for potential clinical, agricultural, and industrial use.
{"title":"Manipulating the molecular specificity of transcriptional biosensors for tryptophan metabolites and analogs","authors":"Chenggang Xi, Yuefeng Ma, Matthew B. Amrofell, Tae Seok Moon","doi":"10.1016/j.xcrp.2024.102211","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102211","url":null,"abstract":"<p>Tryptophan and its metabolites, produced by the gut microbiota, are pivotal for human physiological and mental health. Yet, quantifying these structurally similar compounds with high specificity remains a challenge, hindering point-of-care diagnostics and targeted therapeutic interventions. Leveraging the innate specificity and adaptability of biological systems, we present a biosensing approach capable of identifying specific metabolites in complex contexts with minimal cross-activity. This study introduces a generalizable strategy that combines evolutionary analysis, key ligand-binding residue identification, and mutagenesis scanning to pinpoint ligand-specific transcription factor variants. Furthermore, we uncover regulatory mechanisms within uncharacterized ligand-binding domains, whether in homodimer interfaces or monomers, through structural prediction and ligand docking. Notably, our “plug-and-play” strategy broadens the detection spectrum, enabling the exclusive biosensing of indole-3-acetic acid (an auxin), tryptamine, indole-3-pyruvic acid, and other tryptophan derivatives in engineered probiotics. This groundwork paves the way to create highly specific transcriptional biosensors for potential clinical, agricultural, and industrial use.</p>","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"8 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142264643","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Designing a soft manipulator that effectively serves human applications presents significant challenges, especially in motion robustness and accuracy. The elephant trunk, with its flexibility, strong load-bearing capacity, and dexterous yet soft tip, provides an inspiring model. Inspired by the elephant trunk’s thrust-deformation mechanism under multi-muscle action, we present the design principles of a composite tendon and pneumatic hybrid-driven tapered soft manipulator (TSM). Simulation and testing show that the TSM achieves a repeatability accuracy of 0.69 0.43 mm and single-axis errors below 2 mm. With a 2-kg load, it maintains less than 37 mm of deformation in all poses. Additionally, the TSM reduces contact pressure by 35.7% through active softening. These results highlight the manipulator’s strengths in motion stability, load-bearing capacity, and safety during human contact, showcasing its potential as a flexible limb for mobile or humanoid robots.
{"title":"Biomimetic tapered soft manipulator with precision and load-bearing capacity","authors":"Xianglong Li, Shouyi Zhang, Quan Xiong, Dongbao Sui, Qinghua Zhang, Ziqi Wang, Lingkai Luan, Tianjiao Zheng, Jizhuang Fan, Jie Zhao, Yanhe Zhu","doi":"10.1016/j.xcrp.2024.102210","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102210","url":null,"abstract":"<p>Designing a soft manipulator that effectively serves human applications presents significant challenges, especially in motion robustness and accuracy. The elephant trunk, with its flexibility, strong load-bearing capacity, and dexterous yet soft tip, provides an inspiring model. Inspired by the elephant trunk’s thrust-deformation mechanism under multi-muscle action, we present the design principles of a composite tendon and pneumatic hybrid-driven tapered soft manipulator (TSM). Simulation and testing show that the TSM achieves a repeatability accuracy of 0.69 <span><span style=\"\"></span><span data-mathml='<math xmlns=\"http://www.w3.org/1998/Math/MathML\"><mrow is=\"true\"><mo linebreak=\"goodbreak\" linebreakstyle=\"after\" is=\"true\">&#xB1;</mo></mrow></math>' role=\"presentation\" style=\"font-size: 90%; display: inline-block; position: relative;\" tabindex=\"0\"><svg aria-hidden=\"true\" focusable=\"false\" height=\"1.971ex\" role=\"img\" style=\"vertical-align: -0.235ex;\" viewbox=\"0 -747.2 778.5 848.5\" width=\"1.808ex\" xmlns:xlink=\"http://www.w3.org/1999/xlink\"><g fill=\"currentColor\" stroke=\"currentColor\" stroke-width=\"0\" transform=\"matrix(1 0 0 -1 0 0)\"><g is=\"true\"><g is=\"true\"><use xlink:href=\"#MJMAIN-B1\"></use></g></g></g></svg><span role=\"presentation\"><math xmlns=\"http://www.w3.org/1998/Math/MathML\"><mrow is=\"true\"><mo is=\"true\" linebreak=\"goodbreak\" linebreakstyle=\"after\">±</mo></mrow></math></span></span><script type=\"math/mml\"><math><mrow is=\"true\"><mo linebreak=\"goodbreak\" linebreakstyle=\"after\" is=\"true\">±</mo></mrow></math></script></span> 0.43 mm and single-axis errors below 2 mm. With a 2-kg load, it maintains less than 37 mm of deformation in all poses. Additionally, the TSM reduces contact pressure by 35.7% through active softening. These results highlight the manipulator’s strengths in motion stability, load-bearing capacity, and safety during human contact, showcasing its potential as a flexible limb for mobile or humanoid robots.</p>","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"43 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142225986","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-12DOI: 10.1016/j.xcrp.2024.102205
Weichang Li, Yijiao Li, Niu Xiao, Manqing Liu, Deqian Tang, Songyue Ou, Li Gao, Changhao Li, Xiting Li, Yan Wang, Bo Yang
Current antibacterial and cytokine therapies for periodontitis have demonstrated suboptimal outcomes, and it remains challenging to achieve the two effects simultaneously in a straightforward approach to drug treatment. Here, we present a bifunctional nanoplatform based on polymer vesicles (PVs) that exhibits simultaneous broad-spectrum antibacterial and excellent immunomodulatory properties. The nanoplatform consists of PVs self-assembled from an amphiphilic block copolymer polystyrene-block-polyacrylic acid (PS-b-PAA), silver nanoparticles, and interleukin-4 (IL-4), resulting in the formation of PV/Ag@IL-4. We demonstrate the favorable biocompatibility of PV/Ag@IL-4, as well as its synergistic antibacterial and osteoimmunomodulatory properties, while emphasizing the role of PV/Ag@IL-4 in rescuing the imbalance of periodontal bone homeostasis. This bifunctional nanoplatform exhibits great potential as a candidate for synergistic antibacterial-immunomodulatory therapeutics in the treatment of periodontitis. Additionally, its versatility and simplicity make it a promising platform for developing multifunctional treatments targeting various diseases.
{"title":"A promising platform of nanovesicles as a synergistic strategy for antibacterial and immunomodulation in treating periodontitis","authors":"Weichang Li, Yijiao Li, Niu Xiao, Manqing Liu, Deqian Tang, Songyue Ou, Li Gao, Changhao Li, Xiting Li, Yan Wang, Bo Yang","doi":"10.1016/j.xcrp.2024.102205","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102205","url":null,"abstract":"<p>Current antibacterial and cytokine therapies for periodontitis have demonstrated suboptimal outcomes, and it remains challenging to achieve the two effects simultaneously in a straightforward approach to drug treatment. Here, we present a bifunctional nanoplatform based on polymer vesicles (PVs) that exhibits simultaneous broad-spectrum antibacterial and excellent immunomodulatory properties. The nanoplatform consists of PVs self-assembled from an amphiphilic block copolymer polystyrene-block-polyacrylic acid (PS-<em>b</em>-PAA), silver nanoparticles, and interleukin-4 (IL-4), resulting in the formation of PV/Ag@IL-4. We demonstrate the favorable biocompatibility of PV/Ag@IL-4, as well as its synergistic antibacterial and osteoimmunomodulatory properties, while emphasizing the role of PV/Ag@IL-4 in rescuing the imbalance of periodontal bone homeostasis. This bifunctional nanoplatform exhibits great potential as a candidate for synergistic antibacterial-immunomodulatory therapeutics in the treatment of periodontitis. Additionally, its versatility and simplicity make it a promising platform for developing multifunctional treatments targeting various diseases.</p>","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"11 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142225984","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1016/j.xcrp.2024.102208
Shangwei Zhou, Yunsong Wu, Linlin Xu, Winfried Kockelmann, Lara Rasha, Wenjia Du, Rhodri Owen, Jiadi Yang, Bochen Li, Paul R. Shearing, Marc-Olivier Coppens, Dan J.L. Brett, Rhodri Jervis
Polymer electrolyte fuel cells are a crucial piece of approaching net zero due to their high power density, rapid refueling, and eco-friendly operation. However, stable performance and durability rely on subtle water balance. Existing water management strategies, including humidification, drainage, and cold starts, primarily depend on indirect feedback or calibration through the output voltage. The direct, real-time measurement of the overall water content inside a fuel cell remains challenging, hindering the implementation of efficient feedback water control. To address this issue, synchronous measurement of neutron imaging and electrochemical impedance spectroscopy are carried out at various water contents. Machine learning is used to establish a non-linear correlation between the two characterizations. This enables the development of a more cost-effective and attainable real-time water-content estimation technique—inferred from a universal electrochemical impedance spectroscopy tool rather than relying solely on the limited availability of neutron imaging, which will facilitate the optimization and advancement of polymer electrolyte fuel cells.
{"title":"Water content estimation in polymer electrolyte fuel cells using synchronous electrochemical impedance spectroscopy and neutron imaging","authors":"Shangwei Zhou, Yunsong Wu, Linlin Xu, Winfried Kockelmann, Lara Rasha, Wenjia Du, Rhodri Owen, Jiadi Yang, Bochen Li, Paul R. Shearing, Marc-Olivier Coppens, Dan J.L. Brett, Rhodri Jervis","doi":"10.1016/j.xcrp.2024.102208","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102208","url":null,"abstract":"<p>Polymer electrolyte fuel cells are a crucial piece of approaching net zero due to their high power density, rapid refueling, and eco-friendly operation. However, stable performance and durability rely on subtle water balance. Existing water management strategies, including humidification, drainage, and cold starts, primarily depend on indirect feedback or calibration through the output voltage. The direct, real-time measurement of the overall water content inside a fuel cell remains challenging, hindering the implementation of efficient feedback water control. To address this issue, synchronous measurement of neutron imaging and electrochemical impedance spectroscopy are carried out at various water contents. Machine learning is used to establish a non-linear correlation between the two characterizations. This enables the development of a more cost-effective and attainable real-time water-content estimation technique—inferred from a universal electrochemical impedance spectroscopy tool rather than relying solely on the limited availability of neutron imaging, which will facilitate the optimization and advancement of polymer electrolyte fuel cells.</p>","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"49 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142225985","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1016/j.xcrp.2024.102181
Ze Li, Jiayang Li, Guiwen Qu, Kang Chen, Ye Liu, Sicheng Li, Canwen Chen, Yun Zhao, Jinjian Huang, Peige Wang, Xiuwen Wu, Jianan Ren
Hydrogels are commonly utilized as a three-dimensional cell culture platform. High-stiffness hydrogels promote directional cell differentiation, but they may also restrict cellular activity. Here, we report a process utilizing sacrificial templates and nanoparticles for the preparation of multiscale hydrogels with macroporous and locally enhanced stiffness properties. The macroporous hydrogels provide ample space for cells, which facilitates cell activity and proliferation. Chemical doping of the nanoparticles creates a locally stiffness-enhanced region without affecting its macroscopic mechanical properties. This regional stiffness promotes osteogenic differentiation of encapsulated adipose-derived mesenchymal stem cells (ADSCs). Importantly, the functional activity of the ADSCs increases significantly after osteogenic differentiation in hydrogels. Notably, the hydrogels efficiently activate mechanotransduction signals in the ADSCs and influence their fate. In addition, ADSC-loaded multiscale hydrogels promote bone regeneration of rat cranial defects in animal experiments. Collectively, our findings demonstrate that this technique has promising applications in the biomedical field.
{"title":"Multiscale hydrogel regulates mesenchymal stem cell fate for bone regeneration","authors":"Ze Li, Jiayang Li, Guiwen Qu, Kang Chen, Ye Liu, Sicheng Li, Canwen Chen, Yun Zhao, Jinjian Huang, Peige Wang, Xiuwen Wu, Jianan Ren","doi":"10.1016/j.xcrp.2024.102181","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102181","url":null,"abstract":"<p>Hydrogels are commonly utilized as a three-dimensional cell culture platform. High-stiffness hydrogels promote directional cell differentiation, but they may also restrict cellular activity. Here, we report a process utilizing sacrificial templates and nanoparticles for the preparation of multiscale hydrogels with macroporous and locally enhanced stiffness properties. The macroporous hydrogels provide ample space for cells, which facilitates cell activity and proliferation. Chemical doping of the nanoparticles creates a locally stiffness-enhanced region without affecting its macroscopic mechanical properties. This regional stiffness promotes osteogenic differentiation of encapsulated adipose-derived mesenchymal stem cells (ADSCs). Importantly, the functional activity of the ADSCs increases significantly after osteogenic differentiation in hydrogels. Notably, the hydrogels efficiently activate mechanotransduction signals in the ADSCs and influence their fate. In addition, ADSC-loaded multiscale hydrogels promote bone regeneration of rat cranial defects in animal experiments. Collectively, our findings demonstrate that this technique has promising applications in the biomedical field.</p>","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"13 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142225983","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1016/j.xcrp.2024.102193
Adryan F.L. Ferreira, Karen O. Osiro, Kamila B.S. de Oliveira, Marlon H. Cardoso, Lucas R. de Lima, Harry M. Duque, Maria L.R. Macedo, Céline Landon, Cesar de la Fuente-Nunez, Octavio L. Franco
Molecular de-extinction is an emerging field that identifies potentially useful molecules throughout evolution. Here, we computationally mine genomes, searching for molecules called defensins, which play a role in host immunity. Our approach leads to the discovery of six undescribed β-defensins, five of which are derived from two different extinct bird species and one from a mammalian species. These organisms included an extinct moa species (Anomalopteryx didiformis) that inhabited New Zealand and the extinct Spix’s macaw (Cyanopsitta spixii), which was endemic to Brazil, as well as the black rhino (Diceros bicornis minor). Evolutionary and structural analyses of the β-defensins are performed to further characterize these molecules. This study identifies molecules from extinct organisms, revealing defensins and opening new avenues for antibiotic discovery.
{"title":"Defensins identified through molecular de-extinction","authors":"Adryan F.L. Ferreira, Karen O. Osiro, Kamila B.S. de Oliveira, Marlon H. Cardoso, Lucas R. de Lima, Harry M. Duque, Maria L.R. Macedo, Céline Landon, Cesar de la Fuente-Nunez, Octavio L. Franco","doi":"10.1016/j.xcrp.2024.102193","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102193","url":null,"abstract":"<p>Molecular de-extinction is an emerging field that identifies potentially useful molecules throughout evolution. Here, we computationally mine genomes, searching for molecules called defensins, which play a role in host immunity. Our approach leads to the discovery of six undescribed β-defensins, five of which are derived from two different extinct bird species and one from a mammalian species. These organisms included an extinct moa species (<em>Anomalopteryx didiformis</em>) that inhabited New Zealand and the extinct Spix’s macaw (<em>Cyanopsitta spixii</em>), which was endemic to Brazil, as well as the black rhino (<em>Diceros bicornis minor</em>). Evolutionary and structural analyses of the β-defensins are performed to further characterize these molecules. This study identifies molecules from extinct organisms, revealing defensins and opening new avenues for antibiotic discovery.</p>","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"2 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142225982","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-10DOI: 10.1016/j.xcrp.2024.102200
Leonid Digel, Robin Bonné, Kartik Aiyer
Microbial electroactivity enables microorganisms to exchange electrons with extracellular electron donors and acceptors. Initially identified in Geobacter and Shewanella, it has now become evident that microbial electroactivity is prevalent in a variety of environments, facilitating access to distant and scarce electron donors and acceptors. This phenomenon is not confined to a few select microbes but spans across the three domains of life, viz. archaea, bacteria, and eukaryotes. In this perspective, we discuss electroactivity as a unifying metabolic trait across diverse microbial taxa, including phototrophs, sulfur-oxidizing bacteria, iron-oxidizing bacteria, nitrogen fixers, and even obligate aerobes. We highlight recent findings regarding possible mechanisms for the spread of electroactivity via horizontal gene transfer. Importantly, structurally conserved mechanisms of extracellular electron transfer (EET) across different microbial groups underscore its evolutionary significance. Considering the dominance of anaerobic metabolisms on early Earth, we propose that electroactivity is an ancestral adaptation available to all extant microorganisms.
{"title":"Are all microbes electroactive?","authors":"Leonid Digel, Robin Bonné, Kartik Aiyer","doi":"10.1016/j.xcrp.2024.102200","DOIUrl":"https://doi.org/10.1016/j.xcrp.2024.102200","url":null,"abstract":"<p>Microbial electroactivity enables microorganisms to exchange electrons with extracellular electron donors and acceptors. Initially identified in <em>Geobacter</em> and <em>Shewanella</em>, it has now become evident that microbial electroactivity is prevalent in a variety of environments, facilitating access to distant and scarce electron donors and acceptors. This phenomenon is not confined to a few select microbes but spans across the three domains of life, viz. archaea, bacteria, and eukaryotes. In this perspective, we discuss electroactivity as a unifying metabolic trait across diverse microbial taxa, including phototrophs, sulfur-oxidizing bacteria, iron-oxidizing bacteria, nitrogen fixers, and even obligate aerobes. We highlight recent findings regarding possible mechanisms for the spread of electroactivity via horizontal gene transfer. Importantly, structurally conserved mechanisms of extracellular electron transfer (EET) across different microbial groups underscore its evolutionary significance. Considering the dominance of anaerobic metabolisms on early Earth, we propose that electroactivity is an ancestral adaptation available to all extant microorganisms.</p>","PeriodicalId":9703,"journal":{"name":"Cell Reports Physical Science","volume":"61 1","pages":""},"PeriodicalIF":8.9,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142225988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}