Hanqing Wu, Zechao Ma, Chujin Ruan, Wei Hu, Miao Han, Wei Wan, Yingying Wang, Francis Zvomuya, Chao Liang, Ying Liu, Gang Wang
Genomic evidence suggests that lysogenic viruses significantly influence the evolution of their host communities and soil microbial ecology and functionality. However, the response of soil viral reproductive strategies (VRS) to environmental factors, in particular soil water stress, remains poorly understood. We investigated this by employing a laboratory microcosm incubation system with different soil moisture levels (30%, 60% and 90% field capacity). Our study focused on soil biochemical properties, bacterial and viral populations, lysogenic fractions and virus/bacteria ratio (VBR). The results showed that soil moisture significantly affected bacterial and viral counts, lysogenic fractions and VBR (p < 0.01), with bacterial counts increasing and viral counts decreasing with increasing soil moisture. The lysogenic fraction peaked at low moisture, suggesting a shift in viral strategy under hydration stress, which may affect virus-bacteria interactions and nutrient dynamics, enhancing host adaptability. Analyses using correlation, random forest and structural equation modelling identified soil moisture as the dominant factor shaping VRS by altering nutrient availability and host population. These findings provide a new insight into microbial regulation of feedback to environmental change from the life history strategies of soil viruses.
{"title":"Effects of soil moisture on soil viral reproductive strategies in an agricultural soil","authors":"Hanqing Wu, Zechao Ma, Chujin Ruan, Wei Hu, Miao Han, Wei Wan, Yingying Wang, Francis Zvomuya, Chao Liang, Ying Liu, Gang Wang","doi":"10.1111/ejss.13531","DOIUrl":"https://doi.org/10.1111/ejss.13531","url":null,"abstract":"<p>Genomic evidence suggests that lysogenic viruses significantly influence the evolution of their host communities and soil microbial ecology and functionality. However, the response of soil viral reproductive strategies (VRS) to environmental factors, in particular soil water stress, remains poorly understood. We investigated this by employing a laboratory microcosm incubation system with different soil moisture levels (30%, 60% and 90% field capacity). Our study focused on soil biochemical properties, bacterial and viral populations, lysogenic fractions and virus/bacteria ratio (VBR). The results showed that soil moisture significantly affected bacterial and viral counts, lysogenic fractions and VBR (<i>p</i> < 0.01), with bacterial counts increasing and viral counts decreasing with increasing soil moisture. The lysogenic fraction peaked at low moisture, suggesting a shift in viral strategy under hydration stress, which may affect virus-bacteria interactions and nutrient dynamics, enhancing host adaptability. Analyses using correlation, random forest and structural equation modelling identified soil moisture as the dominant factor shaping VRS by altering nutrient availability and host population. These findings provide a new insight into microbial regulation of feedback to environmental change from the life history strategies of soil viruses.</p>","PeriodicalId":12043,"journal":{"name":"European Journal of Soil Science","volume":"75 4","pages":""},"PeriodicalIF":4.0,"publicationDate":"2024-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141624229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anatol Helfenstein, Vera L. Mulder, Mirjam J. D. Hack-ten Broeke, Bas C. Breman
Nature-inclusive scenarios of the future can help address numerous societal challenges related to soil health. As nature-inclusive scenarios imply sustainable management of natural systems and resources, land use and soil health are assumed to be mutually beneficial in such scenarios. However, the interplay between nature-inclusive land use scenarios and soil health has never been modelled using digital soil mapping. We predicted soil organic matter (SOM), an important indicator of soil health, in 2050, based on a recently developed nature-inclusive scenario and machine learning in 3D space and time in the Netherlands. By deriving dynamic covariates related to land use and the occurrence of peat for 2050, we predicted SOM and its uncertainty in 2050 and assessed SOM changes between 2022 and 2050 from 0 to 2 m depth at 25 m resolution. We found little changes in the majority of mineral soils. However, SOM decreases of up to 5% were predicted in grasslands used for animal-based production systems in 2022, which transitioned into croplands for plant-based production systems by 2050. Although increases up to 25% SOM were predicted between 0 and 40 cm depth in rewetted peatlands, even larger decreases, on reclaimed land even surpassing 25% SOM, were predicted on non-rewetted land in peat layers below 40 cm depth. There were several limitations to our approach, mostly due to predicting future trends based on historic data. Furthermore, nuanced nature-inclusive practices, such as the adoption of agroecological farming methods, were too complex to incorporate in the model and would likely affect SOM spatial variability. Nonetheless, 3D-mapping of SOM in 2050 created new insights and raised important questions related to soil health behind nature-inclusive scenarios. Using machine learning explicit in 3D space and time to predict the impact of future scenarios on soil health is a useful tool for facilitating societal discussion, aiding policy making and promoting transformative change.
{"title":"A nature-inclusive future with healthy soils? Mapping soil organic matter in 2050 in the Netherlands","authors":"Anatol Helfenstein, Vera L. Mulder, Mirjam J. D. Hack-ten Broeke, Bas C. Breman","doi":"10.1111/ejss.13529","DOIUrl":"https://doi.org/10.1111/ejss.13529","url":null,"abstract":"<p>Nature-inclusive scenarios of the future can help address numerous societal challenges related to soil health. As nature-inclusive scenarios imply sustainable management of natural systems and resources, land use and soil health are assumed to be mutually beneficial in such scenarios. However, the interplay between nature-inclusive land use scenarios and soil health has never been modelled using digital soil mapping. We predicted soil organic matter (SOM), an important indicator of soil health, in 2050, based on a recently developed nature-inclusive scenario and machine learning in 3D space and time in the Netherlands. By deriving dynamic covariates related to land use and the occurrence of peat for 2050, we predicted SOM and its uncertainty in 2050 and assessed SOM changes between 2022 and 2050 from 0 to 2 m depth at 25 m resolution. We found little changes in the majority of mineral soils. However, SOM decreases of up to 5% were predicted in grasslands used for animal-based production systems in 2022, which transitioned into croplands for plant-based production systems by 2050. Although increases up to 25% SOM were predicted between 0 and 40 cm depth in rewetted peatlands, even larger decreases, on reclaimed land even surpassing 25% SOM, were predicted on non-rewetted land in peat layers below 40 cm depth. There were several limitations to our approach, mostly due to predicting future trends based on historic data. Furthermore, nuanced nature-inclusive practices, such as the adoption of agroecological farming methods, were too complex to incorporate in the model and would likely affect SOM spatial variability. Nonetheless, 3D-mapping of SOM in 2050 created new insights and raised important questions related to soil health behind nature-inclusive scenarios. Using machine learning explicit in 3D space and time to predict the impact of future scenarios on soil health is a useful tool for facilitating societal discussion, aiding policy making and promoting transformative change.</p>","PeriodicalId":12043,"journal":{"name":"European Journal of Soil Science","volume":"75 4","pages":""},"PeriodicalIF":4.0,"publicationDate":"2024-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/ejss.13529","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141597024","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lindokuhle X. Dlamini, Elmarie Kotzé, Mathieu Thevenot, Gregor T. Feig, Olivier Mathieu, Jean Lévêque
Despite the importance of South Africa's Afromontane grasslands for ecosystem services (water supply and biodiversity), soil organic carbon (SOC) research remains limited. These grasslands evolved with fire, and fire exclusion leads to native plant afforestation. This study investigated SOC fractions and origin to understand the impact of fire-exclusion-driven afforestation and aspect on SOC storage in Afromontane grasslands. This study in Cathedral Peak Research Catchments, initiated in the 1940s, compared an afforested fire-excluded site (AF) to a periodically burnt (accidental fires, 2–5 years interval) grassland (PB) within the same catchment (Catchment-IX). Additionally, it compared a south-facing periodically burnt grassland (Catchment-IX) to a north-facing biennially burnt grassland (Catchment-VI). Soil samples collected at soil-depth increments (0–5, 5–10, 10–15, 15–20, 20–30, 30–60 and 60–100 cm) revealed that, within Catchment IX, PB had more topsoil SOC stocks and microbial activity than AF but similar active carbon (C) concentrations. As expected, δ13C values revealed that SOC in PB originates from C4 grasses, whilst it mostly originates from C3 plants in AF. The south-facing slope (Catchment-IX) had more SOC stocks, microbial activity and active C compared to the north-facing slope (Catchment-VI). Fire-exclusion-driven afforestation changed SOC input from roots to litter, thus reducing SOC storage. Cooler south-facing slopes are better C reservoirs. Afromontane grasslands show greater potential for C sequestration than afforested systems.
{"title":"Impact of fire exclusion and aspect on soil carbon fractions in Afromontane grasslands, Cathedral Peak, South Africa","authors":"Lindokuhle X. Dlamini, Elmarie Kotzé, Mathieu Thevenot, Gregor T. Feig, Olivier Mathieu, Jean Lévêque","doi":"10.1111/ejss.13528","DOIUrl":"10.1111/ejss.13528","url":null,"abstract":"<p>Despite the importance of South Africa's Afromontane grasslands for ecosystem services (water supply and biodiversity), soil organic carbon (SOC) research remains limited. These grasslands evolved with fire, and fire exclusion leads to native plant afforestation. This study investigated SOC fractions and origin to understand the impact of fire-exclusion-driven afforestation and aspect on SOC storage in Afromontane grasslands. This study in Cathedral Peak Research Catchments, initiated in the 1940s, compared an afforested fire-excluded site (AF) to a periodically burnt (accidental fires, 2–5 years interval) grassland (PB) within the same catchment (Catchment-IX). Additionally, it compared a south-facing periodically burnt grassland (Catchment-IX) to a north-facing biennially burnt grassland (Catchment-VI). Soil samples collected at soil-depth increments (0–5, 5–10, 10–15, 15–20, 20–30, 30–60 and 60–100 cm) revealed that, within Catchment IX, PB had more topsoil SOC stocks and microbial activity than AF but similar active carbon (C) concentrations. As expected, δ<sup>13</sup>C values revealed that SOC in PB originates from C<sub>4</sub> grasses, whilst it mostly originates from C<sub>3</sub> plants in AF. The south-facing slope (Catchment-IX) had more SOC stocks, microbial activity and active C compared to the north-facing slope (Catchment-VI). Fire-exclusion-driven afforestation changed SOC input from roots to litter, thus reducing SOC storage. Cooler south-facing slopes are better C reservoirs. Afromontane grasslands show greater potential for C sequestration than afforested systems.</p>","PeriodicalId":12043,"journal":{"name":"European Journal of Soil Science","volume":"75 4","pages":""},"PeriodicalIF":4.0,"publicationDate":"2024-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/ejss.13528","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141566018","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Acid sulfate soils (ASS) containing hypersulfidic material (pH >4) can, when drained, transform to ASS with a thionic horizon (pH <4), which can cause environmental effects due to the formation of sulfuric acid and the consequent mobilization and leaching of metals and acid into waterways, as well as cause geotechnical problems. Yet, the occurrence of ASS has till now not been a topic of research in Norway. The present pilot study was carried out on an area along the northern coast of Norway. Thirty-nine localities were sampled and analysed near Alta. Of these, six were classified as ASS with either hypersulfidic or parahypersulfidic material. ASS is not as widespread as within the Baltic Sea area, but the analyses document the occurrence of ASS with hypersulfidic material with high acidifying potential in certain areas if oxidized. This pilot study shows that ASS occurs in specific areas. Three localities with documented ASS were studied in greater detail. Here, sections were excavated and analysed to help with the understanding of the geological context of these occurrences. In this way, the geological prerequisites considered of importance of soils with ASS with hypersulfidic material are outlined. The prerequisites for ASS occurrence that evolved during this study include young, marine, fine-grained deposits and a low relief environment subjected to episodic sedimentation but otherwise calm water and little water exchange. The results are a starting point for further studies of ASS occurrences along the Norwegian coast.
含有高硫酸盐物质(pH 值为 4)的酸性硫酸盐土壤(ASS)在排水后会转变为含硫酸盐层(pH 值为 4)的酸性硫酸盐土壤,硫酸的形成会对环境造成影响,金属和酸会随之迁移并渗入水道,同时还会造成岩土工程问题。然而,迄今为止,ASS 的发生还不是挪威的研究课题。本试验性研究是在挪威北部沿海地区进行的。对阿尔塔附近的 39 个地点进行了采样和分析。其中,6 个地点被归类为 ASS,含有次硫酸盐或准过硫酸盐物质。ASS 的分布范围不如波罗的海地区广泛,但分析结果表明,ASS 含有次硫酸盐物质,如果被氧化,在某些地区具有很高的酸化潜力。这项试点研究表明,ASS 存在于特定区域。对三个有 ASS 记录的地方进行了更详细的研究。在这里,对剖面进行了挖掘和分析,以帮助了解这些矿点的地质背景。通过这种方式,概述了含有次硫酸盐物质的 ASS 土壤的重要地质先决条件。在这项研究中,出现 ASS 的先决条件包括:年轻的海洋细粒沉积物和地势较低的环境,这种环境会受到偶发性沉积作用的影响,但在其他情况下,水流平静,水交换很少。研究结果是进一步研究挪威海岸 ASS 现象的起点。
{"title":"The first documented and characterized Norwegian acid sulfate soils","authors":"Malin Andersson, Louise Hansen","doi":"10.1111/ejss.13537","DOIUrl":"https://doi.org/10.1111/ejss.13537","url":null,"abstract":"<p>Acid sulfate soils (ASS) containing hypersulfidic material (pH >4) can, when drained, transform to ASS with a thionic horizon (pH <4), which can cause environmental effects due to the formation of sulfuric acid and the consequent mobilization and leaching of metals and acid into waterways, as well as cause geotechnical problems. Yet, the occurrence of ASS has till now not been a topic of research in Norway. The present pilot study was carried out on an area along the northern coast of Norway. Thirty-nine localities were sampled and analysed near Alta. Of these, six were classified as ASS with either hypersulfidic or parahypersulfidic material. ASS is not as widespread as within the Baltic Sea area, but the analyses document the occurrence of ASS with hypersulfidic material with high acidifying potential in certain areas if oxidized. This pilot study shows that ASS occurs in specific areas. Three localities with documented ASS were studied in greater detail. Here, sections were excavated and analysed to help with the understanding of the geological context of these occurrences. In this way, the geological prerequisites considered of importance of soils with ASS with hypersulfidic material are outlined. The prerequisites for ASS occurrence that evolved during this study include young, marine, fine-grained deposits and a low relief environment subjected to episodic sedimentation but otherwise calm water and little water exchange. The results are a starting point for further studies of ASS occurrences along the Norwegian coast.</p>","PeriodicalId":12043,"journal":{"name":"European Journal of Soil Science","volume":"75 4","pages":""},"PeriodicalIF":4.0,"publicationDate":"2024-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141584033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Léa Courteille, Philippe Lagacherie, Nadia Boukhelifa, Evelyne Lutton, Léa Tardieu
To ensure soil preservation, it is essential to incorporate the soil's ability to provide ecosystem services into the spatial planning process. For well-informed planning decisions, stakeholders need spatially explicit information on the state of the soils and the functions they fulfil, with sufficient spatial resolution and quantified uncertainty. It has been shown that Digital Soil Mapping (DSM) products can provide such information. However, in some cases, fine spatial resolution coupled with high levels of uncertainty may lead stakeholders to overlook the inherent uncertainties in the information. Spatial aggregation of DSM products opens up a promising avenue for obtaining maps that are more tailored to the users' scales of decision making while facilitating uncertainty communication. In this perspective, we propose a new spatial aggregation approach relying on spatially constrained agglomerative clustering (AC). The spatial aggregation approach is applied to a 25-m-resolution soil potential multifunctionality index (SPMI) map developed for the coastal plain of the Occitanie Region. This DSM product was increasingly aggregated to obtain SPMI maps of different resolutions displaying two distinct areal metrics: proportions of area above a given threshold of SPMI, and mean SPMI. Each map was evaluated through a set of indicators selected for their potential impact on user decision making: mean spatial resolution, overall predicted uncertainty, quantity of information and mean within-unit variability. The maps were compared with respect to these indicators to other maps obtained with alternative aggregation methods employed in DSM literature (maps aggregated according to some administrative units and QuadMaps). We show that all the tested aggregation methods produced a substantial decrease of the map uncertainty with moderate loss of spatial resolution. However, only AC preserved the fine spatial pattern of the initial DSM product while enabling fine tuning of the uncertainty displayed to end-users. We show that AC can simplify the identification of extensive regions characterized by low uncertainty without losing information regarding soil multifunctionality, thereby facilitating and enhancing the efficiency of planning decisions.
{"title":"Using spatial aggregation of soil multifunctionality maps to support uncertainty-aware planning decisions","authors":"Léa Courteille, Philippe Lagacherie, Nadia Boukhelifa, Evelyne Lutton, Léa Tardieu","doi":"10.1111/ejss.13523","DOIUrl":"https://doi.org/10.1111/ejss.13523","url":null,"abstract":"<p>To ensure soil preservation, it is essential to incorporate the soil's ability to provide ecosystem services into the spatial planning process. For well-informed planning decisions, stakeholders need spatially explicit information on the state of the soils and the functions they fulfil, with sufficient spatial resolution and quantified uncertainty. It has been shown that Digital Soil Mapping (DSM) products can provide such information. However, in some cases, fine spatial resolution coupled with high levels of uncertainty may lead stakeholders to overlook the inherent uncertainties in the information. Spatial aggregation of DSM products opens up a promising avenue for obtaining maps that are more tailored to the users' scales of decision making while facilitating uncertainty communication. In this perspective, we propose a new spatial aggregation approach relying on spatially constrained agglomerative clustering (AC). The spatial aggregation approach is applied to a 25-m-resolution soil potential multifunctionality index (SPMI) map developed for the coastal plain of the Occitanie Region. This DSM product was increasingly aggregated to obtain SPMI maps of different resolutions displaying two distinct areal metrics: proportions of area above a given threshold of SPMI, and mean SPMI. Each map was evaluated through a set of indicators selected for their potential impact on user decision making: mean spatial resolution, overall predicted uncertainty, quantity of information and mean within-unit variability. The maps were compared with respect to these indicators to other maps obtained with alternative aggregation methods employed in DSM literature (maps aggregated according to some administrative units and QuadMaps). We show that all the tested aggregation methods produced a substantial decrease of the map uncertainty with moderate loss of spatial resolution. However, only AC preserved the fine spatial pattern of the initial DSM product while enabling fine tuning of the uncertainty displayed to end-users. We show that AC can simplify the identification of extensive regions characterized by low uncertainty without losing information regarding soil multifunctionality, thereby facilitating and enhancing the efficiency of planning decisions.</p>","PeriodicalId":12043,"journal":{"name":"European Journal of Soil Science","volume":"75 4","pages":""},"PeriodicalIF":4.0,"publicationDate":"2024-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141584035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}