首页 > 最新文献

Food microbiology最新文献

英文 中文
Development of qPCR-PMAxx™ and ddPCR-PMAxx™ methods for quantitative detection of viable but not culturable Cronobacter sakazakii on stainless steel surfaces after desiccation and exposure to commercial disinfectant 开发qPCR-PMAxx™和ddPCR-PMAxx™方法,用于在干燥和暴露于商业消毒剂后的不锈钢表面上定量检测活的但不可培养的阪崎克罗诺杆菌
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-24 DOI: 10.1016/j.fm.2025.104969
Romain Delattre , Brice Bargoumane , Karine Le Barillec , Simon Le Hello , Aurélie Hanin
Cronobacter spp. is an opportunistic foodborne pathogen responsible for life-threatening infections such as meningitis and necrotizing enterocolitis in neonates, but also for various complications in elderly and immunocompromised people. Environmental monitoring in powdered milk manufacturing plants shows that Cronobacter can persist in production environments for long periods of time. The aim of this study is to develop a method to assess the viability of Cronobacter cells after implementation of stress encountered in industries to determine whether this bacterium can persist in processing environments in a dormant state known as Viable But Non-Cultivable (VBNC) state, making it undetectable by conventional enumeration methods. We developed two detection systems specific to the genus Cronobacter based on quantitative PCR (qPCR) and Droplet Digital PCR (ddPCR) in combination with a PMAxx™ (Propidium Monoazide) treatment and agar enumeration to assess the viability of detected cells. Despite a better sensitivity for ddPCR, qPCR-PMAxx™ was more suitable for VBNC detection, as it effectively differentiates viable from dead cells. Desiccation at 58 °C and 20 % relative humidity led to a significant reduction in culturable bacteria, with a drop from 6.82 to 2.58 log copies of genome per coupon over 48 h, while qPCR-PMAxx™ revealed that the proportion of VBNC cells represents approximately 1/100 of the total population of viable bacteria (V). Similarly, treatment of Cronobacter biofilms with a peracetic acid containing disinfectant induced the VBNC state in Cronobacter. The ability of this bacterium to enter the VBNC state may explain its long-term survival in processing plants and highlights the need for appropriate detection methods for effective environmental monitoring plans.
克罗诺杆菌是一种机会性食源性病原体,可导致危及生命的感染,如新生儿脑膜炎和坏死性小肠结肠炎,但也可导致老年人和免疫功能低下人群的各种并发症。奶粉生产厂的环境监测表明,克罗诺杆菌可在生产环境中长期存在。本研究的目的是开发一种方法来评估克罗诺杆菌细胞在工业中遇到的压力后的生存能力,以确定这种细菌是否能在加工环境中以休眠状态持续存在,这种状态被称为可存活但不可培养(VBNC)状态,使其无法通过传统的枚举方法检测到。我们开发了两种针对克罗诺杆菌属的检测系统,基于定量PCR (qPCR)和液滴数字PCR (ddPCR),结合PMAxx™(单叠氮丙啶)处理和琼脂计数来评估检测细胞的活力。尽管对ddPCR有更好的灵敏度,但qPCR-PMAxx™更适合于VBNC检测,因为它能有效地区分活细胞和死细胞。在58°C和20%相对湿度下的干燥导致可培养细菌的显著减少,在48小时内从6.82个基因组拷贝下降到2.58个对数拷贝,而qPCR-PMAxx™显示VBNC细胞的比例约占活菌总数的1/100 (V)。同样,用含过氧乙酸的消毒剂处理克罗诺杆菌生物膜可诱导克罗诺杆菌的VBNC状态。这种细菌进入VBNC状态的能力可能解释了它在加工厂中的长期生存,并强调了为有效的环境监测计划提供适当的检测方法的必要性。
{"title":"Development of qPCR-PMAxx™ and ddPCR-PMAxx™ methods for quantitative detection of viable but not culturable Cronobacter sakazakii on stainless steel surfaces after desiccation and exposure to commercial disinfectant","authors":"Romain Delattre ,&nbsp;Brice Bargoumane ,&nbsp;Karine Le Barillec ,&nbsp;Simon Le Hello ,&nbsp;Aurélie Hanin","doi":"10.1016/j.fm.2025.104969","DOIUrl":"10.1016/j.fm.2025.104969","url":null,"abstract":"<div><div><em>Cronobacter</em> spp. is an opportunistic foodborne pathogen responsible for life-threatening infections such as meningitis and necrotizing enterocolitis in neonates, but also for various complications in elderly and immunocompromised people. Environmental monitoring in powdered milk manufacturing plants shows that <em>Cronobacter</em> can persist in production environments for long periods of time. The aim of this study is to develop a method to assess the viability of <em>Cronobacter</em> cells after implementation of stress encountered in industries to determine whether this bacterium can persist in processing environments in a dormant state known as Viable But Non-Cultivable (VBNC) state, making it undetectable by conventional enumeration methods. We developed two detection systems specific to the genus <em>Cronobacter</em> based on quantitative PCR (qPCR) and Droplet Digital PCR (ddPCR) in combination with a PMAxx™ (Propidium Monoazide) treatment and agar enumeration to assess the viability of detected cells. Despite a better sensitivity for ddPCR, qPCR-PMAxx™ was more suitable for VBNC detection, as it effectively differentiates viable from dead cells. Desiccation at 58 °C and 20 % relative humidity led to a significant reduction in culturable bacteria, with a drop from 6.82 to 2.58 log copies of genome per coupon over 48 h, while qPCR-PMAxx™ revealed that the proportion of VBNC cells represents approximately 1/100 of the total population of viable bacteria (V). Similarly, treatment of <em>Cronobacter</em> biofilms with a peracetic acid containing disinfectant induced the VBNC state in <em>Cronobacter</em>. The ability of this bacterium to enter the VBNC state may explain its long-term survival in processing plants and highlights the need for appropriate detection methods for effective environmental monitoring plans.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"135 ","pages":"Article 104969"},"PeriodicalIF":4.6,"publicationDate":"2025-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145414006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prevalence and genomic characterization of pathogenic blaNDM-positive Escherichia coli from retail meats: The first large-scale study in 22 cities of China 零售肉类致病性blandm阳性大肠杆菌的流行率和基因组特征:中国22个城市的首次大规模研究
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-23 DOI: 10.1016/j.fm.2025.104948
Mei-Jun Chu , Ming Zou , Han Wang , Junjie Wang , Zhiyuan You , Yan Li , Bao-Tao Liu
Retail meat is a suspected reservoir of blaNDM-positive carbapenem-resistant Escherichia coli (CREC), resulting in foodborne illnesses in humans. Abuse of antibiotics in swine and chicken farming is common in China, however, large-scale studies about blaNDM-positive CREC from retail meats and their pathogenicity in China are rare. In the present study, we sampled 817 pork and chicken meats, from 152 markets in 22 cities of China, during the period of 2017–2020, and analyzed the prevalence of and genomic characteristics of pathogenic blaNDM-positive CREC. A total of 203 CREC carrying 7 blaNDM variants were obtained in the 185 CREC-positive meat samples. Notably, 37.2 % of the blaNDM-positive isolates co-harbored mcr-1, conferring resistance to nearly all currently available antibiotics. We firstly revealed high prevalence rates of blaNDM-positive ExPEC (extraintestinal pathogenic E. coli, 19.1 %), APEC (avian pathogenic E. coli, 29.0 %) and UPEC (uropathogenic E. coli, 32.2 %) in retail meats in China, and found that chicken meat had a higher detection rate of pathogenic CREC than pork. The most common blaNDM subtype in pathogenic strains was blaNDM-5, followed by blaNDM-9. The blaNDM-13 subtype was firstly found in isolates from meat. Whole-genome sequencing showed these pathogenic strains had high genetic diversity, with ST457, ST156 and ST6751 being the main sequence types. The genetic relationship among CREC of different origins based on phylogenomic analysis indicated the wide spread of these isolates, which was confirmed by the high similarities of the blaNDM/mcr-1-bearing plasmids from meats and from animals and humans in different geographical areas. The horizontal transmission of these multidrug-resistant pathogens was mainly mediated by transferable blaNDM-5-bearing IncFIB, IncFIC and IncX3 plasmids, blaNDM-9-bearing IncB/O plasmids and mcr-1-bearing IncI2 and IncX4 plasmids. This study highlighted retail meat could act as an important vehicle for spreading pathogenic blaNDM-positive CREC between animals and humans.
零售肉类被怀疑是blandm阳性碳青霉烯耐药大肠杆菌(CREC)的储存库,导致人类食源性疾病。在中国,养猪场和养鸡场滥用抗生素很常见,然而,关于零售肉类中blandm阳性的CREC及其致病性的大规模研究在中国很少。在本研究中,我们从2017-2020年中国22个城市的152个市场中取样了817种猪肉和鸡肉,分析了致病性blandm阳性CREC的患病率和基因组特征。在185份crecc阳性的肉类样本中,共获得203个携带7种blaNDM变体的CREC。值得注意的是,37.2%的blandm阳性分离株同时携带mcr-1,对几乎所有目前可用的抗生素都具有耐药性。我们首先发现blandm阳性的expc(肠外致病性大肠杆菌,19.1%)、APEC(禽源致病性大肠杆菌,29.0%)和UPEC(尿源致病性大肠杆菌,32.2%)在中国零售肉类中具有较高的流行率,并发现鸡肉致病性CREC的检出率高于猪肉。致病性菌株中最常见的blaNDM亚型为blaNDM-5,其次为blaNDM-9。blaNDM-13亚型首次在肉类分离株中发现。全基因组测序结果显示,这些致病菌株具有较高的遗传多样性,主要序列类型为ST457、ST156和ST6751。基于系统基因组分析的不同来源的CREC的遗传关系表明,这些分离株分布广泛,来自不同地理区域的肉类、动物和人类携带blaNDM/mcr-1的质粒高度相似,证实了这一点。这些多药耐药病原菌的水平传播主要由携带blandm -5的IncFIB、IncFIC和IncX3质粒、携带blandm -9的IncB/O质粒和携带mcr-1的inc2和IncX4质粒介导。这项研究强调,零售肉类可能是动物和人类之间传播致病性blandm阳性CREC的重要载体。
{"title":"Prevalence and genomic characterization of pathogenic blaNDM-positive Escherichia coli from retail meats: The first large-scale study in 22 cities of China","authors":"Mei-Jun Chu ,&nbsp;Ming Zou ,&nbsp;Han Wang ,&nbsp;Junjie Wang ,&nbsp;Zhiyuan You ,&nbsp;Yan Li ,&nbsp;Bao-Tao Liu","doi":"10.1016/j.fm.2025.104948","DOIUrl":"10.1016/j.fm.2025.104948","url":null,"abstract":"<div><div>Retail meat is a suspected reservoir of <em>bla</em><sub>NDM</sub>-positive carbapenem-resistant <em>Escherichia coli</em> (CREC), resulting in foodborne illnesses in humans. Abuse of antibiotics in swine and chicken farming is common in China, however, large-scale studies about <em>bla</em><sub>NDM</sub>-positive CREC from retail meats and their pathogenicity in China are rare. In the present study, we sampled 817 pork and chicken meats, from 152 markets in 22 cities of China, during the period of 2017–2020, and analyzed the prevalence of and genomic characteristics of pathogenic <em>bla</em><sub>NDM</sub>-positive CREC. A total of 203 CREC carrying 7 <em>bla</em><sub>NDM</sub> variants were obtained in the 185 CREC-positive meat samples. Notably, 37.2 % of the <em>bla</em><sub>NDM</sub>-positive isolates co-harbored <em>mcr-1</em>, conferring resistance to nearly all currently available antibiotics. We firstly revealed high prevalence rates of <em>bla</em><sub>NDM</sub>-positive ExPEC (extraintestinal pathogenic <em>E. coli</em>, 19.1 %), APEC (avian pathogenic <em>E. coli</em>, 29.0 %) and UPEC (uropathogeni<em>c E. coli</em>, 32.2 %) in retail meats in China, and found that chicken meat had a higher detection rate of pathogenic CREC than pork. The most common <em>bla</em><sub>NDM</sub> subtype in pathogenic strains was <em>bla</em><sub>NDM-5</sub>, followed by <em>bla</em><sub>NDM-9</sub>. The <em>bla</em><sub>NDM-13</sub> subtype was firstly found in isolates from meat. Whole-genome sequencing showed these pathogenic strains had high genetic diversity, with ST457, ST156 and ST6751 being the main sequence types. The genetic relationship among CREC of different origins based on phylogenomic analysis indicated the wide spread of these isolates, which was confirmed by the high similarities of the <em>bla</em><sub>NDM</sub>/<em>mcr-1</em>-bearing plasmids from meats and from animals and humans in different geographical areas. The horizontal transmission of these multidrug-resistant pathogens was mainly mediated by transferable <em>bla</em><sub>NDM-5</sub>-bearing IncFIB, IncFIC and IncX3 plasmids, <em>bla</em><sub>NDM-9</sub>-bearing IncB/O plasmids and <em>mcr-1</em>-bearing IncI2 and IncX4 plasmids. This study highlighted retail meat could act as an important vehicle for spreading pathogenic <em>bla</em><sub>NDM</sub>-positive CREC between animals and humans.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"135 ","pages":"Article 104948"},"PeriodicalIF":4.6,"publicationDate":"2025-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145414007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Persistence of vegetative and sporulated forms of Clostridium perfringens exposed to air at different relative humidities 暴露于不同相对湿度空气中的产气荚膜梭菌的营养型和孢子型的持久性
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-21 DOI: 10.1016/j.fm.2025.104968
Léa Savard , Sylvie Moundanga , Stéphane Guyot , Narjes Mtimet , Olivier Firmesse , Sébastien Dupont , Laurent Beney
C. perfringens, an anaerobic bacterium, is a common cause of food poisoning that can persist on surfaces in slaughterhouses. However, the mechanisms governing its survival in such environments – characterised by variations in relative air humidity (RAH) – remain poorly understood. This study aimed to evaluate the effect of air exposure on C. perfringens survival and to identify the mechanisms responsible for its inactivation. Vegetative cells and spores of C. perfringens were deposited on inert surfaces and exposed to different RAH (11 %, 43 %, 75 %, 100 %) under both aerobic and anaerobic conditions, to assess the contributions of osmotic and oxidative effects induced by dehydration to cell death. At low RAH, more than 99 % of vegetative cells were inactivated within one day, regardless of oxygen presence. Epifluorescence microscopy and flow cytometry analyses revealed that dehydration and rehydration disrupted membrane integrity, contributing to inactivation through lethal mechanical damage. At 100 % RAH, vegetative cells survived over 3 days under aerobic conditions (>1 %) and over 30 days under anaerobic conditions (>0.003 %). The composition of the dehydration medium had little effect on cell survival. In contrast, spores were much more resistant, with around 10 % survival after two months of stress in presence of oxygen, without any significant effect of dehydration. These results highlight the potential of exploiting RAH fluctuations to develop control strategies targeting C. perfringens vegetative cells. However, the extreme resilience of spores confirms the need for specific and targeted decontamination methods to eliminate them effectively.
产气荚膜梭菌是一种厌氧细菌,是导致食物中毒的常见原因,它可以在屠宰场的表面持续存在。然而,控制其在这种环境中生存的机制——以相对空气湿度(RAH)的变化为特征——仍然知之甚少。本研究旨在评估空气暴露对产气荚膜梭菌存活的影响,并确定其失活的机制。将产气荚膜梭菌的营养细胞和孢子沉积在惰性表面,并在好氧和厌氧条件下暴露于不同的RAH(11%, 43%, 75%, 100%),以评估脱水诱导的渗透和氧化作用对细胞死亡的贡献。在低RAH条件下,超过99%的营养细胞在一天内失活,无论是否有氧气存在。荧光显微镜和流式细胞术分析显示,脱水和再水化破坏了膜的完整性,通过致命的机械损伤导致失活。在100% RAH条件下,营养细胞在好氧条件下存活超过3天(> 1%),在厌氧条件下存活超过30天(> 0.003%)。脱水培养基的组成对细胞存活影响不大。相比之下,孢子的抵抗力要强得多,在氧气存在的压力下存活了两个月,存活率约为10%,没有任何明显的脱水影响。这些结果突出了利用RAH波动来开发针对产气荚膜梭菌营养细胞的控制策略的潜力。然而,孢子的极端弹性证实了需要特定的和有针对性的净化方法来有效地消除它们。
{"title":"Persistence of vegetative and sporulated forms of Clostridium perfringens exposed to air at different relative humidities","authors":"Léa Savard ,&nbsp;Sylvie Moundanga ,&nbsp;Stéphane Guyot ,&nbsp;Narjes Mtimet ,&nbsp;Olivier Firmesse ,&nbsp;Sébastien Dupont ,&nbsp;Laurent Beney","doi":"10.1016/j.fm.2025.104968","DOIUrl":"10.1016/j.fm.2025.104968","url":null,"abstract":"<div><div><em>C. perfringens</em>, an anaerobic bacterium, is a common cause of food poisoning that can persist on surfaces in slaughterhouses. However, the mechanisms governing its survival in such environments – characterised by variations in relative air humidity (RAH) – remain poorly understood. This study aimed to evaluate the effect of air exposure on <em>C. perfringens</em> survival and to identify the mechanisms responsible for its inactivation. Vegetative cells and spores of <em>C. perfringens</em> were deposited on inert surfaces and exposed to different RAH (11 %, 43 %, 75 %, 100 %) under both aerobic and anaerobic conditions, to assess the contributions of osmotic and oxidative effects induced by dehydration to cell death. At low RAH, more than 99 % of vegetative cells were inactivated within one day, regardless of oxygen presence. Epifluorescence microscopy and flow cytometry analyses revealed that dehydration and rehydration disrupted membrane integrity, contributing to inactivation through lethal mechanical damage. At 100 % RAH, vegetative cells survived over 3 days under aerobic conditions (&gt;1 %) and over 30 days under anaerobic conditions (&gt;0.003 %). The composition of the dehydration medium had little effect on cell survival. In contrast, spores were much more resistant, with around 10 % survival after two months of stress in presence of oxygen, without any significant effect of dehydration. These results highlight the potential of exploiting RAH fluctuations to develop control strategies targeting <em>C. perfringens</em> vegetative cells. However, the extreme resilience of spores confirms the need for specific and targeted decontamination methods to eliminate them effectively.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"135 ","pages":"Article 104968"},"PeriodicalIF":4.6,"publicationDate":"2025-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145360681","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial mist pretreatment for enhancing superheated steam efficacy in inactivating Enterococcus faecium NRRL B-2354 on dry food processing surface 提高干燥食品加工表面粪肠球菌NRRL B-2354的过热蒸汽灭活效果的抑菌雾预处理
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-16 DOI: 10.1016/j.fm.2025.104956
Shruthy Seshadrinathan , V.M. Balasubramaniam , Abigail B. Snyder
Superheated steam (SHS) is an emerging sanitation technology for dry food processing environments. This study investigates the efficacy of antimicrobial pretreatments in conjunction with SHS to inactivate microorganisms on stainless steel surfaces. Stainless steel coupons were inoculated with Enterococcus faecium (11.1 ± 0.4 log CFU/cm2), equilibrated to a water activity of 0.2 (aw), and subjected to various antimicrobial pretreatments prior to SHS exposure. This includes soaking for 10 or 20 s in sterile water, 70 % ethanol, 0.05 % peracetic acid (mist applied for 5 s), or acidified oil emulsion (100 μL). SHS experiments were conducted using both bench-scale (100 % steam content) and pilot-scale equipment (5 % steam, 95 % hot air). The nozzle-to-surface distance was maintained at 3 cm. All experiments were performed in triplicate, and surviving microorganisms were enumerated using plate counts (detection limit: 0.2 log CFU/cm2). Antimicrobial pretreatments alone resulted in microbial reductions of <2.0 ± 0.5 log CFU/cm2. SHS treatment using the bench-scale system achieved >6.4 ± 0.3 log CFU/cm2 reduction regardless of pretreatment. Pilot-scale SHS treatment (with or without antimicrobials) achieved lower reductions (<2.8 ± 0.2 log CFU/cm2, p < 0.05) possibly due to lower steam content. Increasing the treatment intensity (195 °C for 30 s) resulted moderate improvement in microbial inactivation (3.3 ± 0.6 log CFU/cm2). This study demonstrates that antimicrobial pretreatments can enhance the efficacy of SHS sanitation and highlights the importance of steam content in the treatment environment.
过热蒸汽(SHS)是一种新兴的干燥食品加工环境卫生技术。本研究探讨了抗菌预处理联合SHS灭活不锈钢表面微生物的效果。不锈钢板接种粪肠球菌(11.1±0.4 log CFU/cm2),平衡水活度为0.2 (aw),并在暴露于SHS之前进行各种抗菌预处理。这包括在无菌水、70%乙醇、0.05%过氧乙酸(雾化5秒)或酸化油乳(100 μL)中浸泡10或20秒。SHS实验采用实验规模(100%蒸汽含量)和中试规模设备(5%蒸汽,95%热空气)进行。喷嘴到表面的距离保持在3cm。所有实验一式三次,用平板计数法对存活微生物进行计数(检出限:0.2 log CFU/cm2)。单独的抗菌预处理导致微生物减少了2.0±0.5 log CFU/cm2。无论进行何种预处理,使用实验规模系统的SHS处理均实现了>;6.4±0.3 log CFU/cm2的降低。中试规模的SHS处理(使用或不使用抗菌剂)实现了较低的降低(<2.8±0.2 log CFU/cm2, p < 0.05),可能是由于蒸汽含量较低。增加处理强度(195°C 30 s)可适度改善微生物失活(3.3±0.6 log CFU/cm2)。本研究表明,抗菌预处理可以提高SHS卫生效果,并突出了处理环境中蒸汽含量的重要性。
{"title":"Antimicrobial mist pretreatment for enhancing superheated steam efficacy in inactivating Enterococcus faecium NRRL B-2354 on dry food processing surface","authors":"Shruthy Seshadrinathan ,&nbsp;V.M. Balasubramaniam ,&nbsp;Abigail B. Snyder","doi":"10.1016/j.fm.2025.104956","DOIUrl":"10.1016/j.fm.2025.104956","url":null,"abstract":"<div><div>Superheated steam (SHS) is an emerging sanitation technology for dry food processing environments. This study investigates the efficacy of antimicrobial pretreatments in conjunction with SHS to inactivate microorganisms on stainless steel surfaces. Stainless steel coupons were inoculated with <em>Enterococcus faecium</em> (11.1 ± 0.4 log CFU/cm<sup>2</sup>), equilibrated to a water activity of 0.2 (a<sub>w</sub>), and subjected to various antimicrobial pretreatments prior to SHS exposure. This includes soaking for 10 or 20 s in sterile water, 70 % ethanol, 0.05 % peracetic acid (mist applied for 5 s), or acidified oil emulsion (100 μL). SHS experiments were conducted using both bench-scale (100 % steam content) and pilot-scale equipment (5 % steam, 95 % hot air). The nozzle-to-surface distance was maintained at 3 cm. All experiments were performed in triplicate, and surviving microorganisms were enumerated using plate counts (detection limit: 0.2 log CFU/cm<sup>2</sup>). Antimicrobial pretreatments alone resulted in microbial reductions of &lt;2.0 ± 0.5 log CFU/cm<sup>2</sup>. SHS treatment using the bench-scale system achieved &gt;6.4 ± 0.3 log CFU/cm<sup>2</sup> reduction regardless of pretreatment. Pilot-scale SHS treatment (with or without antimicrobials) achieved lower reductions (&lt;2.8 ± 0.2 log CFU/cm<sup>2</sup>, <em>p</em> &lt; 0.05) possibly due to lower steam content. Increasing the treatment intensity (195 °C for 30 s) resulted moderate improvement in microbial inactivation (3.3 ± 0.6 log CFU/cm<sup>2</sup>). This study demonstrates that antimicrobial pretreatments can enhance the efficacy of SHS sanitation and highlights the importance of steam content in the treatment environment.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"135 ","pages":"Article 104956"},"PeriodicalIF":4.6,"publicationDate":"2025-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145360682","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deciphering the different saccharide metabolism patterns of unconventional interspecies brewery isolates 破译非常规种间啤酒厂分离株的不同糖代谢模式
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-14 DOI: 10.1016/j.fm.2025.104954
Yu Guan , Qianyao Hou , Chunfeng Liu , Jinjing Wang , Qi Li
The fermentation performance of yeasts is pivotal in very high gravity (VHG) lager beer brewing, particularly in terms of their ability to consume maltose and maltotriose. In this study, we collected two unconventional interspecies brewery isolates used in lager beer brewing, which exhibit different saccharide metabolism patterns. A hybrid of Saccharomyces cerevisiae and Saccharomyces kudriavzevii had a higher affinity for both glucose and maltotriose, while another hybrid of S. cerevisiae, Saccharomyces eubayanus, and Saccharomyces uvarum could rapidly consume more maltose. Transcriptome and comparative genomics were analyzed based on their fermentation performance during VHG brewing. We found that mutated Sk-IMAx could be helpful for maltotriose usage, while Sk-MIG2 could repress maltose consumption. Moreover, their different energy metabolism distribution also influenced the saccharide pattern greatly. The combination of heterosis from both Saccharomyces hybrids might shed light on innovation in VHG lager beer brewing and other diverse fermentation industries. Furthermore, a better understanding of cellular and genetic mechanisms could help us explore other possibilities in hybrids between Saccharomyces siblings.
酵母的发酵性能在非常高重力(VHG)啤酒酿造中是关键的,特别是在它们消耗麦芽糖和麦芽糖的能力方面。在这项研究中,我们收集了两个非传统的种间啤酒厂分离株,用于酿造拉格啤酒,它们表现出不同的糖代谢模式。酿酒酵母(Saccharomyces cerevisiae)和kudriavzevii的杂交菌株对葡萄糖和麦芽糖的亲和力更高,而酿酒酵母(Saccharomyces eubayanus)和酿酒酵母(Saccharomyces uvarum)的杂交菌株对麦芽糖的消耗更快。利用转录组学和比较基因组学分析了它们在VHG酿造过程中的发酵性能。我们发现突变的Sk-IMAx可能有助于麦芽糖的使用,而Sk-MIG2可能抑制麦芽糖的消耗。此外,它们不同的能量代谢分布也对糖类格局产生了很大的影响。两种酵母杂种优势的结合可能为VHG啤酒酿造和其他多种发酵行业的创新提供启示。此外,更好地了解细胞和遗传机制可以帮助我们探索酵母菌兄弟姐妹之间杂交的其他可能性。
{"title":"Deciphering the different saccharide metabolism patterns of unconventional interspecies brewery isolates","authors":"Yu Guan ,&nbsp;Qianyao Hou ,&nbsp;Chunfeng Liu ,&nbsp;Jinjing Wang ,&nbsp;Qi Li","doi":"10.1016/j.fm.2025.104954","DOIUrl":"10.1016/j.fm.2025.104954","url":null,"abstract":"<div><div>The fermentation performance of yeasts is pivotal in very high gravity (VHG) lager beer brewing, particularly in terms of their ability to consume maltose and maltotriose. In this study, we collected two unconventional interspecies brewery isolates used in lager beer brewing, which exhibit different saccharide metabolism patterns. A hybrid of <em>Saccharomyces cerevisiae</em> and <em>Saccharomyces kudriavzevii</em> had a higher affinity for both glucose and maltotriose, while another hybrid of <em>S. cerevisiae</em>, <em>Saccharomyces eubayanus,</em> and <em>Saccharomyces uvarum</em> could rapidly consume more maltose. Transcriptome and comparative genomics were analyzed based on their fermentation performance during VHG brewing. We found that mutated Sk-<em>IMAx</em> could be helpful for maltotriose usage, while Sk-<em>MIG2</em> could repress maltose consumption. Moreover, their different energy metabolism distribution also influenced the saccharide pattern greatly. The combination of heterosis from both <em>Saccharomyces</em> hybrids might shed light on innovation in VHG lager beer brewing and other diverse fermentation industries. Furthermore, a better understanding of cellular and genetic mechanisms could help us explore other possibilities in hybrids between <em>Saccharomyces</em> siblings.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"135 ","pages":"Article 104954"},"PeriodicalIF":4.6,"publicationDate":"2025-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145323556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microbial-mycotoxin interactions in food: A review of ecotoxicological implications and omics approaches for understanding detoxification mechanisms 食品中微生物-真菌毒素的相互作用:生态毒理学意义和理解解毒机制的组学方法综述
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-14 DOI: 10.1016/j.fm.2025.104955
Charles Obinwanne Okoye , Bonaventure Chidi Ezenwanne , Olasoji Olufemi Olalowo , Oma Judith Ajanwachukwu , Kingsley Ikechukwu Chukwudozie
Mycotoxins, toxic secondary metabolites produced by fungi such as Aspergillus, Fusarium, and Penicillium, frequently contaminate food supplies, posing risks to human health, animal welfare, and ecosystem stability. Mycotoxins like aflatoxins, ochratoxin A, fumonisins, trichothecenes, and zearalenone disrupt microbial communities, food chains, and environmental matrices, with synergistic interactions amplifying their toxicity. This review explores microbial-mycotoxin interactions in food systems, focusing on ecotoxicological implications and omics approaches for elucidating detoxification mechanisms. Microbial detoxification, through adsorption by cell wall components (e.g., β-glucans) or enzymatic biodegradation (e.g., lactonases, oxidoreductases), offers a sustainable alternative to physical and chemical methods. However, challenges include variable detoxification efficiency, mechanistic uncertainties, regulatory hurdles, and the detection of masked mycotoxins in complex food matrices. Omics technologies such as metagenomics, genomics, transcriptomics, and their integration provide comprehensive insights into microbial diversity, gene expression, enzyme activity, and metabolite transformations. In addition, omics integration enhances understanding of microbial-mycotoxin dynamics, supporting targeted biocontrol strategies. Future prospects include leveraging synthetic biology, CRISPR-based gene editing, and machine learning-assisted bioinformatics to optimize microbial strains and predict detoxification outcomes. By addressing these challenges, omics-driven approaches can mitigate mycotoxin contamination, ensure food safety, and reduce ecotoxicological impacts across global food systems.
真菌毒素是曲霉、镰刀菌和青霉等真菌产生的有毒次生代谢物,经常污染食品供应,对人类健康、动物福利和生态系统稳定构成风险。黄曲霉毒素、赭曲霉毒素A、伏马菌素、霉霉烯和玉米赤霉烯酮等真菌毒素会破坏微生物群落、食物链和环境基质,通过协同作用放大其毒性。这篇综述探讨了食物系统中微生物-真菌毒素的相互作用,重点是生态毒理学意义和组学方法来阐明解毒机制。微生物解毒,通过吸附细胞壁成分(如β-葡聚糖)或酶的生物降解(如内酯酶,氧化还原酶),提供了一个可持续的替代物理和化学方法。然而,挑战包括不同的解毒效率、机制的不确定性、监管障碍以及在复杂食物基质中检测隐藏真菌毒素。组学技术,如宏基因组学、基因组学、转录组学及其集成提供了对微生物多样性、基因表达、酶活性和代谢物转化的全面见解。此外,组学整合增强了对微生物-霉菌毒素动力学的理解,支持有针对性的生物防治策略。未来的前景包括利用合成生物学、基于crispr的基因编辑和机器学习辅助的生物信息学来优化微生物菌株并预测解毒结果。通过应对这些挑战,组学驱动的方法可以减轻霉菌毒素污染,确保食品安全,并减少全球食品系统的生态毒理学影响。
{"title":"Microbial-mycotoxin interactions in food: A review of ecotoxicological implications and omics approaches for understanding detoxification mechanisms","authors":"Charles Obinwanne Okoye ,&nbsp;Bonaventure Chidi Ezenwanne ,&nbsp;Olasoji Olufemi Olalowo ,&nbsp;Oma Judith Ajanwachukwu ,&nbsp;Kingsley Ikechukwu Chukwudozie","doi":"10.1016/j.fm.2025.104955","DOIUrl":"10.1016/j.fm.2025.104955","url":null,"abstract":"<div><div>Mycotoxins, toxic secondary metabolites produced by fungi such as <em>Aspergillus</em>, <em>Fusarium</em>, and <em>Penicillium</em>, frequently contaminate food supplies, posing risks to human health, animal welfare, and ecosystem stability. Mycotoxins like aflatoxins, ochratoxin A, fumonisins, trichothecenes, and zearalenone disrupt microbial communities, food chains, and environmental matrices, with synergistic interactions amplifying their toxicity. This review explores microbial-mycotoxin interactions in food systems, focusing on ecotoxicological implications and omics approaches for elucidating detoxification mechanisms. Microbial detoxification, through adsorption by cell wall components (e.g., β-glucans) or enzymatic biodegradation (e.g., lactonases, oxidoreductases), offers a sustainable alternative to physical and chemical methods. However, challenges include variable detoxification efficiency, mechanistic uncertainties, regulatory hurdles, and the detection of masked mycotoxins in complex food matrices. Omics technologies such as metagenomics, genomics, transcriptomics, and their integration provide comprehensive insights into microbial diversity, gene expression, enzyme activity, and metabolite transformations. In addition, omics integration enhances understanding of microbial-mycotoxin dynamics, supporting targeted biocontrol strategies. Future prospects include leveraging synthetic biology, CRISPR-based gene editing, and machine learning-assisted bioinformatics to optimize microbial strains and predict detoxification outcomes. By addressing these challenges, omics-driven approaches can mitigate mycotoxin contamination, ensure food safety, and reduce ecotoxicological impacts across global food systems.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"135 ","pages":"Article 104955"},"PeriodicalIF":4.6,"publicationDate":"2025-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145323557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The antifungal potential and mechanistic action of durian shell water extract against citrus pathogen Fusarium oxysporum 榴莲壳水提取物对柑桔尖孢镰刀菌的抑菌潜力及机理研究
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-13 DOI: 10.1016/j.fm.2025.104953
Haiyan Lin , Jingjing Shan , Yineng Wang , Yiliang Cai , Shuo Shan , Xianglong Chen , Wei Hong , Ruiyu Zhu
Hongmeiren citrus, an economically important fruit, currently lacks targeted measures to control postharvest decay. While durian shells are rich in diverse antimicrobial compounds, their antifungal potential remains underexplored. In this study, Fusarium oxysporum was identified as a dominant pathogen causing rot in Hongmeiren citrus. We then evaluated the antifungal efficacy of durian shell water extract (DSWE) against F. oxysporum in vitro and further elucidated the underlying inhibitory mechanism through molecular docking analysis. Our results demonstrated that treatment with 4 mg/mL DSWE significantly reduced mycelial growth diameter by 77.2 % and completely suppressed sporulation by the 6th day post-inoculation, compared to the control (CK). Propidium iodide (PI) staining and scanning electron microscopy (SEM) revealed severe membrane damage and hyphal collapse in F. oxysporum treated with 4 mg/mL DSWE. Molecular docking predicted that three bioactive compounds in DSWE (fraxetin, taxifolin, and muscone) could bind to key proteins involved in the cell wall and membrane biosynthesis of F. oxysporum. Experimental validation confirmed that fraxetin, taxifolin, and muscone reduced the colony diameter of F. oxysporum by 62.8 %, 53.2 %, and 21.1 %, respectively, while inducing significant membrane injury. Notably, fraxetin and taxifolin exhibited superior antifungal activity compared to muscone. This study elucidates the mechanism by which DSWE inhibits F. oxysporum and highlights its potential as an eco-friendly strategy for controlling postharvest pathogens in citrus.
红梅人柑橘是一种重要的经济水果,目前缺乏有针对性的措施来控制采后腐烂。虽然榴莲壳富含多种抗菌化合物,但其抗真菌潜力仍未得到充分开发。本研究确定了尖孢镰刀菌是引起红梅人柑橘腐病的优势病原菌。研究了榴莲壳水提取物(DSWE)对尖孢镰刀菌的体外抑菌效果,并通过分子对接分析进一步阐明其抑菌机制。我们的研究结果表明,与对照(CK)相比,接种4 mg/mL DSWE可显著降低菌丝生长直径77.2%,并在接种后第6天完全抑制孢子的产生。碘化丙啶(PI)染色和扫描电镜(SEM)显示,4 mg/mL DSWE处理后的尖孢镰刀菌(F. oxysporum)膜损伤严重,菌丝崩溃。分子对接预测DSWE中的三种生物活性化合物(曲黄蛋白、杉木素和muscone)可以结合到尖孢镰刀菌细胞壁和膜生物合成的关键蛋白上。实验证实,黄曲霉素、紫杉醇素和麝香素分别使尖孢镰刀菌菌落直径减少62.8%、53.2%和21.1%,但对膜有明显的损伤。值得注意的是,与麝香酮相比,黄曲霉素和taxifolin表现出更强的抗真菌活性。本研究阐明了DSWE抑制尖孢镰刀菌的机制,并强调了其作为控制柑橘采后病原体的生态策略的潜力。
{"title":"The antifungal potential and mechanistic action of durian shell water extract against citrus pathogen Fusarium oxysporum","authors":"Haiyan Lin ,&nbsp;Jingjing Shan ,&nbsp;Yineng Wang ,&nbsp;Yiliang Cai ,&nbsp;Shuo Shan ,&nbsp;Xianglong Chen ,&nbsp;Wei Hong ,&nbsp;Ruiyu Zhu","doi":"10.1016/j.fm.2025.104953","DOIUrl":"10.1016/j.fm.2025.104953","url":null,"abstract":"<div><div>Hongmeiren citrus<em>,</em> an economically important fruit, currently lacks targeted measures to control postharvest decay. While durian shells are rich in diverse antimicrobial compounds, their antifungal potential remains underexplored. In this study, <em>Fusarium oxysporum</em> was identified as a dominant pathogen causing rot in Hongmeiren citrus. We then evaluated the antifungal efficacy of durian shell water extract (DSWE) against <em>F. oxysporum in vitro</em> and further elucidated the underlying inhibitory mechanism through molecular docking analysis. Our results demonstrated that treatment with 4 mg/mL DSWE significantly reduced mycelial growth diameter by 77.2 % and completely suppressed sporulation by the 6th day post-inoculation, compared to the control (CK). Propidium iodide (PI) staining and scanning electron microscopy (SEM) revealed severe membrane damage and hyphal collapse in <em>F. oxysporum</em> treated with 4 mg/mL DSWE. Molecular docking predicted that three bioactive compounds in DSWE (fraxetin, taxifolin, and muscone) could bind to key proteins involved in the cell wall and membrane biosynthesis of <em>F. oxysporum</em>. Experimental validation confirmed that fraxetin, taxifolin, and muscone reduced the colony diameter of <em>F. oxysporum</em> by 62.8 %, 53.2 %, and 21.1 %, respectively, while inducing significant membrane injury. Notably, fraxetin and taxifolin exhibited superior antifungal activity compared to muscone. This study elucidates the mechanism by which DSWE inhibits <em>F. oxysporum</em> and highlights its potential as an eco-friendly strategy for controlling postharvest pathogens in citrus.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"135 ","pages":"Article 104953"},"PeriodicalIF":4.6,"publicationDate":"2025-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145323482","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Conditional synergy: Impact of nutrient abundance on multispecies biofilm formation and sanitizer tolerance 条件协同作用:养分丰度对多物种生物膜形成和消毒剂耐受性的影响
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-13 DOI: 10.1016/j.fm.2025.104952
Krisha Pant, Jon Palmer, Steve Flint
Bacteria exist in varying nutrient conditions and complex microbial consortia. Pseudomonas fluorescens, Staphylococcus aureus, and Listeria monocytogenes are commonly occurring biofilm-formers, share a similar nutritional niche, and have been isolated from common surfaces in multispecies environments. Biofilm properties, including biomass (O.D590 nm), cell concentration (log CFU/cm2), exopolysaccharide content (μg/cm2), structure, and sanitizer tolerance (sodium hypochlorite), were observed under varying nutrient (full-strength TSB and 10 % TSB) conditions on polystyrene surfaces for single and multispecies biofilm. The synergistic interactions between the bacteria in multispecies biofilm were found to be nutrient-dependent, with significantly higher (p < 0.05) biofilm formation, exopolysaccharide content, and sanitizer tolerance in high nutrient conditions (TSB) compared with low nutrient conditions (10 % TSB). The cell concentrations in the biofilm (single and multispecies) were found to be comparable between TSB and 10 % TSB. All three bacteria involved showed increased tolerance against sanitizers in the multispecies arrangement compared to their single-species counterparts, with significantly higher survival for L. monocytogenes (5.3 log CFU/cm2) in a multispecies biofilm compared to its single-species counterpart (2.3 log CFU/cm2). A positive correlation was observed between exopolysaccharide concentration and sanitizer tolerance. This study highlights the importance of taking multiple bacteria and their growth environment into account when understanding sanitizer response, as it varies in multispecies biofilm setups and according to nutrient availability.
细菌存在于不同的营养条件和复杂的微生物群落中。荧光假单胞菌、金黄色葡萄球菌和单核增生李斯特菌是常见的生物膜形成菌,具有相似的营养生态位,并且已从多物种环境的共同表面分离出来。在不同的营养条件(全强度TSB和10% TSB)下,观察了单种和多种生物膜在聚苯乙烯表面的生物膜性能,包括生物量(O.D590 nm)、细胞浓度(log CFU/cm2)、胞外多糖含量(μg/cm2)、结构和消毒剂耐受性(次氯酸钠)。多物种生物膜中细菌之间的协同作用是营养依赖的,高营养条件下(TSB)的生物膜形成、胞外多糖含量和消毒剂耐受性显著高于低营养条件下(10% TSB)。发现生物膜中的细胞浓度(单一和多物种)在TSB和10% TSB之间具有可比性。与单物种相比,在多物种生物膜中,所有三种细菌对消毒剂的耐受性都有所增加,单核增生乳杆菌在多物种生物膜中的存活率(5.3 log CFU/cm2)明显高于单物种生物膜(2.3 log CFU/cm2)。胞外多糖浓度与消毒剂耐受性呈正相关。这项研究强调了在理解消毒剂反应时考虑多种细菌及其生长环境的重要性,因为它在多物种生物膜设置和营养可用性中是不同的。
{"title":"Conditional synergy: Impact of nutrient abundance on multispecies biofilm formation and sanitizer tolerance","authors":"Krisha Pant,&nbsp;Jon Palmer,&nbsp;Steve Flint","doi":"10.1016/j.fm.2025.104952","DOIUrl":"10.1016/j.fm.2025.104952","url":null,"abstract":"<div><div>Bacteria exist in varying nutrient conditions and complex microbial consortia. <em>Pseudomonas fluorescens</em>, <em>Staphylococcus aureus</em>, and <em>Listeria monocytogenes</em> are commonly occurring biofilm-formers, share a similar nutritional niche, and have been isolated from common surfaces in multispecies environments. Biofilm properties, including biomass (O.D<sub>590</sub> nm), cell concentration (log CFU/cm<sup>2</sup>), exopolysaccharide content (μg/cm<sup>2</sup>), structure, and sanitizer tolerance (sodium hypochlorite), were observed under varying nutrient (full-strength TSB and 10 % TSB) conditions on polystyrene surfaces for single and multispecies biofilm. The synergistic interactions between the bacteria in multispecies biofilm were found to be nutrient-dependent, with significantly higher (p &lt; 0.05) biofilm formation, exopolysaccharide content, and sanitizer tolerance in high nutrient conditions (TSB) compared with low nutrient conditions (10 % TSB). The cell concentrations in the biofilm (single and multispecies) were found to be comparable between TSB and 10 % TSB. All three bacteria involved showed increased tolerance against sanitizers in the multispecies arrangement compared to their single-species counterparts, with significantly higher survival for <em>L. monocytogenes</em> (5.3 log CFU/cm<sup>2</sup>) in a multispecies biofilm compared to its single-species counterpart (2.3 log CFU/cm<sup>2</sup>). A positive correlation was observed between exopolysaccharide concentration and sanitizer tolerance. This study highlights the importance of taking multiple bacteria and their growth environment into account when understanding sanitizer response, as it varies in multispecies biofilm setups and according to nutrient availability.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"134 ","pages":"Article 104952"},"PeriodicalIF":4.6,"publicationDate":"2025-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145332595","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic factors contributing to the resilience of Salmonella enterica on ready-to-eat muskmelon 即食甜瓜上肠道沙门氏菌恢复力的基因组因素
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-08 DOI: 10.1016/j.fm.2025.104947
Irene Esteban-Cuesta , Laura Führer , Steffen Porwollik , Weiping Chu , Steven R. Fiddaman , Irmak Sah , Michael McClelland , Claudia Guldimann
Salmonella outbreaks have repeatedly been associated with muskmelons. To identify genes under selection in S. enterica growing in this food matrix, barcoded transposon mutant libraries in three S. enterica serovars - Typhimurium, Enteritidis, and Newport - were screened for survival and growth on muskmelon. Applying stringent thresholds, a total of 26 genes in Typhimurium, 34 in Enteritidis, and 50 in Newport were found to significantly influence fitness during muskmelon interaction, with many of these being temperature dependent. Genes whose disruption affected fitness across all three serovars were enriched for functions related to RNA degradation and ribosome biogenesis. Targeted competition assays confirmed the contribution of selected genes, revealing nutrient-dependent phenotypes for most mutants. Remarkably, the polyribonucleotide nucleotidyltransferase gene, pnp, and the D-3-phosphoglycerate dehydrogenase gene, serA, conferred a selective advantage when growing in muskmelon but not under nutrition-rich control conditions. In contrast, the nitrogen regulation response regulator GlnG provided a muskmelon-specific fitness disadvantage. This study provides novel insights into genome-wide adaptation mechanisms of multiple Salmonella serovars to growth on muskmelons, revealing both shared and serovar-specific determinants while illustrating the dynamic genetic responses of S. enterica throughout the interaction period.
沙门氏菌的爆发多次与甜瓜有关。为了确定在这种食物基质中生长的肠链球菌的选择基因,我们筛选了三种肠链球菌血清型(鼠伤寒菌、肠炎菌和新港菌)的转座子突变体条形码文库,以观察它们在甜瓜上的存活和生长情况。应用严格的阈值,发现鼠伤寒菌共有26个基因、肠炎菌34个基因和新港菌50个基因在甜瓜相互作用期间显著影响适应性,其中许多基因与温度有关。在所有三种血清型中,影响适应性的基因被富集,其功能与RNA降解和核糖体生物发生有关。有针对性的竞争分析证实了选定基因的贡献,揭示了大多数突变体的营养依赖性表型。值得注意的是,多核糖核苷酸核苷酸转移酶基因(pnp)和d -3磷酸甘油脱氢酶基因(serA)在甜瓜中生长时具有选择优势,而在营养丰富的对照条件下则没有。相比之下,氮调控反应调节因子GlnG则提供了甜瓜特有的适应度劣势。这项研究为多种沙门氏菌血清型在甜瓜上生长的全基因组适应机制提供了新的见解,揭示了共同的和血清特异性的决定因素,同时阐明了肠炎沙门氏菌在整个相互作用期间的动态遗传反应。
{"title":"Genomic factors contributing to the resilience of Salmonella enterica on ready-to-eat muskmelon","authors":"Irene Esteban-Cuesta ,&nbsp;Laura Führer ,&nbsp;Steffen Porwollik ,&nbsp;Weiping Chu ,&nbsp;Steven R. Fiddaman ,&nbsp;Irmak Sah ,&nbsp;Michael McClelland ,&nbsp;Claudia Guldimann","doi":"10.1016/j.fm.2025.104947","DOIUrl":"10.1016/j.fm.2025.104947","url":null,"abstract":"<div><div><em>Salmonella</em> outbreaks have repeatedly been associated with muskmelons. To identify genes under selection in <em>S. enterica</em> growing in this food matrix, barcoded transposon mutant libraries in three <em>S. enterica</em> serovars <em>-</em> Typhimurium, Enteritidis, and Newport - were screened for survival and growth on muskmelon. Applying stringent thresholds, a total of 26 genes in Typhimurium, 34 in Enteritidis, and 50 in Newport were found to significantly influence fitness during muskmelon interaction, with many of these being temperature dependent. Genes whose disruption affected fitness across all three serovars were enriched for functions related to RNA degradation and ribosome biogenesis. Targeted competition assays confirmed the contribution of selected genes, revealing nutrient-dependent phenotypes for most mutants. Remarkably, the polyribonucleotide nucleotidyltransferase gene, <em>pnp,</em> and the D-3-phosphoglycerate dehydrogenase gene, <em>serA</em>, conferred a selective advantage when growing in muskmelon but not under nutrition-rich control conditions. In contrast, the nitrogen regulation response regulator GlnG provided a muskmelon-specific fitness disadvantage. This study provides novel insights into genome-wide adaptation mechanisms of multiple <em>Salmonella</em> serovars to growth on muskmelons, revealing both shared and serovar-specific determinants while illustrating the dynamic genetic responses of <em>S. enterica</em> throughout the interaction period.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"134 ","pages":"Article 104947"},"PeriodicalIF":4.6,"publicationDate":"2025-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145332596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Reduction of acetic acid in Cabernet Sauvignon wine fermented by atmospheric and room temperature plasma-mutagenized Saccharomyces cerevisiae 常压和室温等离子体诱变酿酒酵母菌发酵赤霞珠葡萄酒中乙酸的减少
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-08 DOI: 10.1016/j.fm.2025.104951
Nan Wu , Xiaoqing Zhang , Erhu Li
Acetic acid, a major byproduct of Saccharomyces cerevisiae alcoholic fermentation, hinder fermentation efficiency and wine quality. This study improved wine yeast strains through ARTP mutagenesis, resulting in mutant DC-3 with enhanced fermentation performance and reduced acetic acid production. Analysis of DC-3 showed improved oenological properties, including a 25.84 % decrease in acetic acid production compared to wild-type strain RV002 in synthetic grape juice. The study identified a regulatory mechanism in DC-3 that reduces acetate production by suppressing pyruvate decarboxylase, enhancing alcohol dehydrogenase, and inhibiting acetaldehyde dehydrogenase activities, while redirecting metabolism towards glycerol biosynthesis. Transcriptomic analysis confirmed this metabolic shift. DC-3 consistently produced lower acetic acid levels and exhibited a unique volatile profile with higher alcohols and lower esters, specifically reducing acetate esters compared to RV002 in Cabernet Sauvignon wine. This study introduces a novel approach to breeding low-acetate-producing S. cerevisiae strains in Cabernet Sauvignon wine fermentation using ARTP mutagenesis. It lays the groundwork for enhancing wine fermentation processes.
醋酸是酿酒酵母酒精发酵的主要副产物,影响发酵效率和葡萄酒品质。本研究通过ARTP诱变对葡萄酒酵母菌进行了改良,得到了发酵性能提高、醋酸产量降低的突变体DC-3。分析表明DC-3的酿酒性能得到了改善,与野生型RV002相比,合成葡萄汁的乙酸产量降低了25.84%。该研究确定了DC-3的调节机制,该机制通过抑制丙酮酸脱羧酶、增强醇脱氢酶和抑制乙醛脱氢酶活性来减少乙酸的产生,同时将代谢转向甘油生物合成。转录组学分析证实了这种代谢转变。与赤霞珠葡萄酒中的RV002相比,DC-3始终产生较低的乙酸水平,并表现出独特的挥发性,具有较高的醇类和较低的酯类,特别是降低了乙酸酯类。本研究介绍了一种利用ARTP诱变技术在赤霞珠葡萄酒发酵中选育低醋酸盐酿酒葡萄球菌的新方法。它为提高葡萄酒发酵过程奠定了基础。
{"title":"Reduction of acetic acid in Cabernet Sauvignon wine fermented by atmospheric and room temperature plasma-mutagenized Saccharomyces cerevisiae","authors":"Nan Wu ,&nbsp;Xiaoqing Zhang ,&nbsp;Erhu Li","doi":"10.1016/j.fm.2025.104951","DOIUrl":"10.1016/j.fm.2025.104951","url":null,"abstract":"<div><div>Acetic acid, a major byproduct of <em>Saccharomyces cerevisiae</em> alcoholic fermentation, hinder fermentation efficiency and wine quality. This study improved wine yeast strains through ARTP mutagenesis, resulting in mutant DC-3 with enhanced fermentation performance and reduced acetic acid production. Analysis of DC-3 showed improved oenological properties, including a 25.84 % decrease in acetic acid production compared to wild-type strain RV002 in synthetic grape juice. The study identified a regulatory mechanism in DC-3 that reduces acetate production by suppressing pyruvate decarboxylase, enhancing alcohol dehydrogenase, and inhibiting acetaldehyde dehydrogenase activities, while redirecting metabolism towards glycerol biosynthesis. Transcriptomic analysis confirmed this metabolic shift. DC-3 consistently produced lower acetic acid levels and exhibited a unique volatile profile with higher alcohols and lower esters, specifically reducing acetate esters compared to RV002 in Cabernet Sauvignon wine. This study introduces a novel approach to breeding low-acetate-producing <em>S. cerevisiae</em> strains in Cabernet Sauvignon wine fermentation using ARTP mutagenesis. It lays the groundwork for enhancing wine fermentation processes.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"134 ","pages":"Article 104951"},"PeriodicalIF":4.6,"publicationDate":"2025-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145266423","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Food microbiology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1