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A novel in-silico strategy for the combined inhibition of intestinal bacterial resistance and the transfer of resistant genes using new fluoroquinolones, antibiotic adjuvants, and phytochemicals 利用新型氟喹诺酮类药物、抗生素佐剂和植物化学物质联合抑制肠道细菌耐药性和耐药基因转移的新型分子内策略
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-05 DOI: 10.1016/j.fbio.2024.105036

The antibiotic resistance and transfer of antibiotic resistance genes (ARGs) lead to severe environmental threats, and efficient regulatory measures to solve the above problems are urgently needed. Thus, a novel three-dimensional quantitative structure-activity relationship for S. aureus antibiotic resistance was constructed in this study. A fluoroquinolone (FQ) substitute (CIP-098) with decreased bacterial resistance by 15.19% and antibiotic adjuvant (2-phenylquinoline efflux pump inhibitor (2P-Q-EPI) substitute (Z-20)) that enhanced efflux pump inhibition by 1.96 times were designed. Mechanism analysis revealed that hydrogen bond donors and hydrogen bonding in FQ are essential groups and non-covalent interactions, which assist antibiotics in combating resistance mutations in S. aureus's DNA gyrase that transition from hydrophilic to hydrophobic residues. Z-20 was found to easily bind to key amino acid residues (Phe-16, Ile-19), thus reducing the antibiotic expulsion by the NorA efflux pump protein, which can inhibit antibiotic resistance in bacteria. The non-antibiotic factor regulatory scheme designed in this study significantly reduced (by 39.70%) the efflux of FQ by S. aureus and the risk of horizontal ARGs transfer. This study proposes a new strategy to mitigate FQ antibiotic resistance and ARGs transfer in gut microbiota, offering technical support for the green development of FQ antibiotics and 2P-Q-EPI.

抗生素耐药性和抗生素耐药基因(ARGs)的转移导致了严重的环境威胁,迫切需要有效的监管措施来解决上述问题。因此,本研究构建了金黄色葡萄球菌抗生素耐药性的新型三维定量结构-活性关系。设计出了可降低细菌耐药性 15.19% 的氟喹诺酮(FQ)替代物(CIP-098)和可增强外排泵抑制作用 1.96 倍的抗生素辅助剂(2-苯基喹啉外排泵抑制剂(2P-Q-EPI)替代物(Z-20))。机理分析表明,FQ 中的氢键供体和氢键是必不可少的基团和非共价相互作用,有助于抗生素对抗金黄色葡萄球菌 DNA 回旋酶中从亲水残基过渡到疏水残基的耐药性突变。研究发现,Z-20 很容易与关键氨基酸残基(Phe-16、Ile-19)结合,从而减少 NorA 外排泵蛋白对抗生素的排出,从而抑制细菌对抗生素的耐药性。本研究设计的非抗生素因子调控方案大大降低了(39.70%)金黄色葡萄球菌对 FQ 的外排,并降低了 ARGs 水平转移的风险。该研究提出了一种缓解肠道微生物群中 FQ 抗生素耐药性和 ARGs 转移的新策略,为 FQ 抗生素和 2P-Q-EPI 的绿色开发提供了技术支持。
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引用次数: 0
Therapeutic potential of mushrooms: A review on NF-κB modulation in chronic inflammation 蘑菇的治疗潜力:慢性炎症中的 NF-κB 调节综述
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-05 DOI: 10.1016/j.fbio.2024.105059

Numerous mushroom species are valued not just for their flavor but also for their health advantages. Historically, these mushrooms have been utilized for medicinal purposes across different parts of the world. Research has revealed that metabolites derived from these fungi have health benefits. Recently, there has been a growing interest in understanding how these fungal metabolites provide their healing effects and comprehend their mechanisms of action. A primary focus is the nuclear factor NF-κB, a family of transcription factors essential for regulating inflammation, cell proliferation, and apoptosis. Dysregulation and abnormal activation of NF-κB proteins are associated with a variety of diseases. Various studies have investigated mushroom compounds and their impact on various conditions, including inflammatory bowel disease, gut health, metabolic syndrome, neuroinflammation, liver injury, renal and pulmonary diseases, and autoimmune disorders. This review provides a comprehensive summary of the NF-κB signaling pathway and other related inflammatory pathways. It discusses the bioactive compounds found in mushrooms, their potential to alleviate various diseases, and the specific inflammatory pathways, particularly NF-κB, that these bioactives target.

许多蘑菇品种不仅因其味道鲜美,还因其健康优势而备受青睐。从历史上看,这些蘑菇在世界各地都被用作药用植物。研究表明,从这些真菌中提取的代谢物具有保健作用。最近,人们越来越有兴趣了解这些真菌代谢物是如何产生治疗效果的,以及了解它们的作用机制。一个主要焦点是核因子 NF-κB,这是一个转录因子家族,对调节炎症、细胞增殖和凋亡至关重要。NF-κB 蛋白的失调和异常激活与多种疾病有关。各种研究调查了蘑菇化合物及其对各种疾病的影响,包括炎症性肠病、肠道健康、代谢综合征、神经炎症、肝损伤、肾脏和肺部疾病以及自身免疫性疾病。本综述全面总结了 NF-κB 信号通路和其他相关的炎症通路。它讨论了在蘑菇中发现的生物活性化合物、它们缓解各种疾病的潜力,以及这些生物活性物质所针对的特定炎症途径,特别是 NF-κB。
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引用次数: 0
2D-printed colorimetric paper-sensor for monitoring fish and milk freshness during the shelf life 用于监测鱼类和牛奶保鲜期的二维打印比色纸传感器
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-05 DOI: 10.1016/j.fbio.2024.105042

A novel colorimetric paper-sensor (CPS) in this research was fabricated by functionalizing filter paper with mulberry anthocyanin to monitor the freshness of packaged carp and milk. A 2D printer was applied to distribute uniformly mulberry anthocyanin onto the filter paper to form 10 × 10 mm2 squares, whose colors had a response to ambient pH values. The obtained CPS demonstrated satisfactory stability and reliable color-rendering capacity at pH 2–12. The correlation between color variation and sample freshness was quantitatively evaluated. The application of CPS in detecting the freshness of carp and milk at 25 °C was further studied, whose results evidenced that CPS had a significant color variation when ΔE was greater than 5. Additionally, its color turned from red-violet to gray when TVB-N of carp was greater than 20 mg/mL, implying that there was a strong positive correlation between TVB-N and color variation (R = 0.515). Finally, quantitative analysis about color was conducted by the color recognition software of smartphone. The results indicated when S value (the newly defined color calculation method) was less than 50 or R value was greater than 120, milk and fish were rotten. Consequently, 2D printer could be a promising tool to fabricate intelligent packaging materials enabling monitor visually freshness.

本研究通过在滤纸上添加桑椹花青素,制作了一种新型比色纸传感器(CPS),用于监测包装鲤鱼和牛奶的新鲜度。使用二维打印机将桑椹花青素均匀地分布在滤纸上,形成 10 × 10 mm2 的正方形,其颜色对环境 pH 值具有响应。所获得的 CPS 在 pH 值为 2-12 时具有令人满意的稳定性和可靠的显色能力。对颜色变化与样品新鲜度之间的相关性进行了定量评估。结果表明,当 ΔE 大于 5 时,CPS 具有明显的颜色变化。此外,当鲤鱼的 TVB-N 大于 20 毫克/毫升时,其颜色由紫红色变为灰色,这意味着 TVB-N 与颜色变化之间存在很强的正相关性(R = 0.515)。最后,利用智能手机的颜色识别软件对颜色进行了定量分析。结果表明,当 S 值(新定义的颜色计算方法)小于 50 或 R 值大于 120 时,牛奶和鱼都是腐烂的。因此,2D 打印机是制造智能包装材料的理想工具,可以直观地监控产品的新鲜度。
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引用次数: 0
A review of camel β-casein: From purification processes, to bioactivity and techno-functionality 骆驼β-酪蛋白综述:从提纯工艺到生物活性和技术功能
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-05 DOI: 10.1016/j.fbio.2024.105060

In recent years, interest in pure casein fractions has grown, especially the β-casein due to its physicochemical, biological and techno-functional properties. Camel milk represents a source of β-casein with higher contents than those of cow's milk which makes its isolation more feasible and economical. The present review deals with the current technologies for the purification and isolation of β-casein from camel milk on a laboratory scale. Furthermore, antioxidant, antimicrobial, chaperone, foaming and emulsifying properties of camel β-casein are presented. The examination of the biological activities and technological functionalities of the camel β-casein highlights its potential as a valuable ingredient in the food industry due to its nutritional value which is of significant scientific and industrial interest.

近年来,人们对纯酪蛋白组分的兴趣与日俱增,尤其是β-酪蛋白,因为它具有物理化学、生物学和技术功能特性。骆驼奶是β-酪蛋白的来源,其含量高于牛奶,这使得分离β-酪蛋白更加可行和经济。本综述介绍了目前在实验室规模上从骆驼奶中纯化和分离 β-酪蛋白的技术。此外,还介绍了骆驼 β-酪蛋白的抗氧化、抗菌、伴侣、发泡和乳化特性。对骆驼 β-酪蛋白的生物活性和技术功能的研究突出表明,由于其营养价值,骆驼 β-酪蛋白有可能成为食品工业中的一种有价值的配料,这在科学界和工业界都具有重大意义。
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引用次数: 0
The hypoglycemic activity of buckwheat and the underlying mechanisms: A mechanistic review 荞麦的降血糖活性及其潜在机制:机理综述
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-04 DOI: 10.1016/j.fbio.2024.105046
Buckwheat belongs to the group of pseudocereals with two main species, common buckwheat (F. esculentum Moench) and Tartary buckwheat (F. tataricum L.). Consumption of buckwheat, especially Tartary buckwheat, exhibits excellent health benefits due to its rich content of various functional components. Numerous studies have demonstrated that long-term consumption of buckwheat and buckwheat-derived products could significantly improve hyperglycemia, a typical feature of diabetes. Presently, we performed a mechanistic review to focus on the hypoglycemic activity of small molecular active ingredients in buckwheat and further summarize the potential molecular mechanisms. Buckwheat is rich in multitudinous small molecule active compounds, such as polyphenols, flavonoids, inositol, carotenoids, etc, which play an important role in hypoglycemic activity via different mechanisms, including inhibition of carbohydrate digestive enzymes, improvement of insulin resistance, alleviation of oxidative stress, and anti-inflammatory activity. This review is expected to provide more details of the hypoglycemic activity of buckwheat and further promote the development of buckwheat functional foods.
荞麦属于假荞麦,有两个主要品种,即普通荞麦(F. esculentum Moench)和鞑靼荞麦(F. tataricum L.)。食用荞麦,尤其是鞑靼荞麦,因其富含各种功能成分而对健康大有裨益。大量研究表明,长期食用荞麦和荞麦衍生产品可显著改善糖尿病的典型特征--高血糖。目前,我们对荞麦中的小分子活性成分的降血糖活性进行了机理综述,并进一步总结了潜在的分子机理。荞麦富含多种小分子活性化合物,如多酚、类黄酮、肌醇、类胡萝卜素等,它们通过不同的机制在降血糖活性中发挥重要作用,包括抑制碳水化合物消化酶、改善胰岛素抵抗、减轻氧化应激和抗炎活性。本综述有望提供有关荞麦降血糖活性的更多详细信息,并进一步促进荞麦功能食品的开发。
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引用次数: 0
Inhibitory effect of phenolic compounds on lipoxygenase activity in reverse micellar systems 酚类化合物对反向胶束体系中脂氧合酶活性的抑制作用
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-03 DOI: 10.1016/j.fbio.2024.105039

Lipoxygenases catalyze the oxidation reaction of fatty acids that have 1,4-Z, Z-pentadiene systems, forming conjugated hydroperoxides as primary products. These enzymes are present in foods participating in oxidative processes that can lead to organoleptic and nutritional quality spoilage. Therefore, different technological processes have been developed that modulate its pro-oxidant activity by antioxidant addition. As LOX substrates are insoluble in water, its reactions in reversed micelles offer numerous advantages, including the solubilization of both hydrophilic and hydrophobic substrates or products, minimized reaction volumes, a substantial hydrophilic/hydrophobic interfacial area, and control over enzyme activity and stability. The main aims of this work were to evaluate the inhibitory effect of synthetic and natural antioxidants on lipid oxidation catalyzed by lipoxygenase and to determine the kinetic parameters and type of inhibition in reverse micelles for the first time. This biomimetic system water in oil was designed using AOT as the surfactant and linoleic acid as a substrate to measure the enzyme inhibition of a series of phenolic compounds. All these compounds assayed have behavior as mixed non-competitive inhibitors according to linear and non-linear regression methods. The reductions of the catalytic activity of lipoxygenase were between 50% and 70%; besides, the kinetic parameters were also affected by decreasing the Vmax from 266 μMs−1 to 217, 215, and 101 μMs−1 for sinapic acid, propyl gallate, and quercetin, respectively, as the most active inhibitors of the series. Selecting phenolic compounds with strong LOX inhibitory activity maximizes the prevention of lipid oxidation in various food matrices.

脂肪氧化酶催化具有 1,4-Z,Z-戊二烯系统的脂肪酸的氧化反应,形成共轭氢过氧化物作为主要产物。这些酶存在于食品中,参与氧化过程,可导致感官和营养质量的破坏。因此,人们开发了不同的技术工艺,通过添加抗氧化剂来调节其促氧化活性。由于 LOX 底物不溶于水,其在反向胶束中的反应具有许多优点,包括同时溶解亲水性和疏水性底物或产物、反应体积最小、亲水/疏水界面面积大,以及可控制酶的活性和稳定性。这项工作的主要目的是评估合成抗氧化剂和天然抗氧化剂对脂氧合酶催化的脂质氧化的抑制作用,并首次确定反向胶束的动力学参数和抑制类型。以 AOT 为表面活性剂,以亚油酸为底物,设计了油中水生物模拟系统,以测定一系列酚类化合物对酶的抑制作用。根据线性和非线性回归方法,所有这些被测化合物都是混合非竞争性抑制剂。脂氧合酶的催化活性降低了 50%至 70%;此外,动力学参数也受到了影响,山奈酸、没食子酸丙酯和槲皮素作为该系列中最活跃的抑制剂,其 Vmax 分别从 266 μMs-1 降至 217、215 和 101 μMs-1。选择具有较强 LOX 抑制活性的酚类化合物可以最大限度地防止各种食品基质中的脂质氧化。
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引用次数: 0
Effect of roasting temperature on the physicochemical characteristics, phenolic content and bioactive potential of Spondias spp. seed flours 焙烧温度对辣木籽粉的理化特性、酚类物质含量和生物活性潜力的影响
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-03 DOI: 10.1016/j.fbio.2024.105053

The present study aimed to evaluate the effect of roasting temperature on physicochemical characteristics, phenolic content, and bioactive potential of yellow mombin (Spondias mombin L.) and Brazil plum (Spondias tuberosa) seed flours. The flours were characterized and roasted at 165 °C, 170 °C, 175 °C, and 180 °C for 6 min. After treatment, the samples were evaluated concerning color, total phenolic compounds, antioxidant activity, enzyme inhibition and technological properties. Thermogravimetric analysis and differential scanning calorimetry results showed a thermal resistance of the flours up to approximately 200 °C. The color parameters varied significantly between samples, darkening with increasing temperature. Phenolic compounds were partially degraded after roasting. However, the values obtained still guarantee the maintenance of antioxidant capacity, with IC50 (50% radical scavenging activity) values of up to 9.38 mg/mL, and in vitro hypoglycemic activity greater than 70%. Furthermore, all technological properties of the flours remained stable after roasting. Therefore, Spondias spp. seed flours after roasting can be used as a functional ingredient by the food industry.

本研究旨在评估焙烧温度对黄刺玫(Spondias mombin L.)和巴西李(Spondias tuberosa)种子面粉的理化特性、酚含量和生物活性潜力的影响。对这些面粉进行了表征,并分别在 165 ℃、170 ℃、175 ℃ 和 180 ℃ 下焙烧 6 分钟。处理后,对样品的颜色、总酚类化合物、抗氧化活性、酶抑制性和工艺性能进行了评估。热重分析和差示扫描量热分析结果表明,面粉的耐热性最高可达约 200 °C。不同样品的颜色参数差异很大,随着温度的升高颜色变深。酚类化合物在烘焙后发生了部分降解。不过,所获得的数值仍然保证了抗氧化能力,IC50(50% 自由基清除活性)值高达 9.38 毫克/毫升,体外降血糖活性超过 70%。此外,焙烧后面粉的所有技术特性都保持稳定。因此,焙烧后的刺五加种子面粉可用作食品工业的功能性配料。
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引用次数: 0
Fucoidan from Sargassum hemiphyllum (Turner) C. Agardh inhibits human hepatoma cell (HepG2) through cell cycle arrest and apoptotic induction 来自马尾藻(特纳)C. Agardh 的褐藻糖胶通过细胞周期停滞和诱导凋亡抑制人肝癌细胞(HepG2)
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-03 DOI: 10.1016/j.fbio.2024.105051

Cancer has become one of the most serious diseases threatening human health, while traditional chemotherapeutic drugs have serious side effects. Drugs of marine origin have attracted many scholars due to their remarkable effectiveness, low drug resistance and low adverse reactions. In this study, the fucoidan DF1 and DF2 extracted from Sargassum hemiphyllum (Turner) C. Agardh were used to explore their effects on induced HepG2 hepatoma cell apoptosis and their relevant molecular mechanisms of apoptosis in HepG2 cells were analyzed by flow cytometry and western blotting assay. DF1 and DF2 could induce excess intracellular reactive oxygen species (ROS) production in HepG2 cells and lead to stimulation of the mitochondrial apoptotic pathway, up-regulate the protein expressions of Bax, Cytochrome C and Cleaved-Caspase-3/8, and down-regulate the protein expressions of Bcl-2 and Caspase-3/8/9. Meanwhile, DF1 and DF2 could induce HepG2 cell cycle arrest in the S-phase and up-regulate the protein expression of p21, and down-regulate the expression of Cyclin A and CDK2. This study provides a scientific basis for the development of VC/H2O2-treated fucoidans as anticancer drugs or adjuvant drugs.

癌症已成为威胁人类健康的最严重疾病之一,而传统的化疗药物具有严重的副作用。海洋药物因其疗效显著、耐药性低、不良反应小等特点吸引了众多学者的关注。本研究利用从马尾藻(Sargassum hemiphyllum (Turner) C. Agardh)中提取的褐藻糖胶 DF1 和 DF2,探讨了它们对诱导 HepG2 肝癌细胞凋亡的作用,并通过流式细胞仪和 Western 印迹法分析了它们诱导 HepG2 细胞凋亡的相关分子机制。结果表明,DF1和DF2可诱导HepG2细胞内活性氧(ROS)生成过多,从而刺激线粒体凋亡通路,上调Bax、细胞色素C和Caspase-3/8的蛋白表达,下调Bcl-2和Caspase-3/8/9的蛋白表达。同时,DF1和DF2能诱导HepG2细胞周期停滞在S期,上调p21的蛋白表达,下调细胞周期蛋白A和CDK2的表达。这项研究为VC/H2O2处理过的褐藻胶作为抗癌药物或辅助药物的开发提供了科学依据。
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引用次数: 0
Development of a blue innovative antioxidant, biodegradable packaging material with Clitoria ternatea L. flos 利用三尖杉花开发一种蓝色创新抗氧化生物可降解包装材料
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-03 DOI: 10.1016/j.fbio.2024.105047

Today, the packaging industry, and in particular the plastic packaging industry, are going to experience a number of challenges as a result of the provisions included in the directive on reducing the environmental impact of plastic packaging materials. Therefore, much attention is being paid to bio-based packaging based on natural and biodegradable polymers. Focus is being placed on natural additives with antioxidant properties to materials, eliminating the risks associated with the migration of chemical, often harmful substances into food. Therefore, in the present study, we obtained a blue antioxidant and biodegradable packaging material with flowers of Clitoria ternatea L., which is additionally safe against selected plants and invertebrates. Furthermore, we observed that the addition of blue matcha improved the barrier properties of the tested films. Samples with matcha CM (cellulose/matcha) and CZM (cellulose/gelatin/matcha) showed WVTR values of 14.44 [g/m2ˑd] and 9.34 [g/m2ˑd], respectively. Antioxidant activity testing by both the DPPH radical and FRAP methods showed the activity of the film containing the matcha extract. The extract alone had the highest activity (DPPH IC50 = 1.44 mg/ml; FRAP IT0.5 = 0.64 mg/ml). CM film had stronger antioxidant activity than CZM film. The film samples without matcha were characterised by TS values of 13.54 [MPa] and 22.24 [MPa], respectively. In contrast, their elongation at break was 74.87 [%] and 41.04 [%]. The samples containing matcha additives showed the weakest mechanical properties: CM and CZM. The cellulose/matcha film (CM) had TS and EAB values of 5.11 [MPa] and 5.05 [%], respectively. Whereas the cellulose/gelatin/matcha film (CZM) had TS and EAB values of 6.45 [MPa] and 1.54 [%], respectively. Application of a high concentration of matcha resulted in a separation of the phase leading to a weakening of the mechanical properties of the films. The observed change in the optical performance of matcha-containing films in this study was due to the blue colour of matcha, which is an effect of the presence of dried flowers. Furthermore, the blue colour of the packaging material has a marketing role as it can make the packaging product ‘stand out’ on the shop shelf.

如今,由于减少塑料包装材料对环境影响的指令规定,包装行业,特别是塑料包装行业,将面临一系列挑战。因此,以天然和可生物降解聚合物为基础的生物基包装备受关注。目前的重点是在材料中添加具有抗氧化性能的天然添加剂,以消除化学物质(通常是有害物质)迁移到食品中的风险。因此,在本研究中,我们获得了一种蓝色的抗氧化和可生物降解的包装材料,这种材料使用了三棱蓟花,而且对某些植物和无脊椎动物是安全的。此外,我们还观察到添加了蓝色抹茶的薄膜提高了测试薄膜的阻隔性能。抹茶 CM(纤维素/抹茶)和 CZM(纤维素/明胶/抹茶)样品的 WVTR 值分别为 14.44 [g/m2ˑd] 和 9.34 [g/m2ˑd]。用 DPPH 自由基法和 FRAP 法进行的抗氧化活性测试表明,含有抹茶提取物的薄膜具有抗氧化活性。单独提取物的活性最高(DPPH IC50 = 1.44 mg/ml;FRAP IT0.5 = 0.64 mg/ml)。CM 薄膜的抗氧化活性强于 CZM 薄膜。不含抹茶的薄膜样品的 TS 值分别为 13.54 [MPa] 和 22.24 [MPa]。相比之下,它们的断裂伸长率分别为 74.87 [%] 和 41.04 [%]。含有抹茶添加剂的样品显示出最弱的机械性能:CM和CZM。纤维素/抹茶薄膜(CM)的 TS 值和 EAB 值分别为 5.11 [MPa] 和 5.05 [%]。而纤维素/明胶/抹茶薄膜(CZM)的 TS 值和 EAB 值分别为 6.45 [MPa] 和 1.54 [%]。应用高浓度抹茶会导致相分离,从而削弱薄膜的机械性能。本研究中观察到的含抹茶薄膜光学性能的变化是由于抹茶的蓝色,这是干花存在的影响。此外,包装材料的蓝色还具有营销作用,因为它可以使包装产品在商店货架上 "脱颖而出"。
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引用次数: 0
Comprehensive genomic analysis and expression profiling of the cytochrome P450 genes during abiotic stress and flavonoid biosynthesis in potato (Solanum tuberosum) 马铃薯(Solanum tuberosum)非生物胁迫和黄酮类化合物生物合成过程中细胞色素 P450 基因的综合基因组分析和表达谱分析
IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY Pub Date : 2024-09-03 DOI: 10.1016/j.fbio.2024.105049

The research focused on the cytochrome P450 (CYP) superfamily, a prominent enzyme family involved in plant metabolism. A total of 253 StCYP genes from the potato genome were investigated and characterized through various methods, including phylogentic analysis, physical and chemical characterization, chromosome localization, gene structure and conserved protein domain classification, gene duplication occurrences, collinearity and expression pattern analysis. The 253 StCYPs were classified into seven clans and 33 families, distributed unevenly across 12 chromosomes. Collinearity analysis revealed 28 pairs of orthologous genes between potato StCYPs and Arabidopsis AtCYPs. Moreover, the expression of the StCYPs in various tissue parts of doubled haploid (DM) potatoes under abiotic stress and exogenous hormone treatment was investigated by using RNA-seq data from the PGSC database. It was discovered that one StCYP gene likely contributes to drought stress response through the ABA-dependent pathway. Furthermore, RNA-seq analysis of pigmented tuber flesh from three potato clones at three developmental stages enabled the identification of StCYPs potentially implicated in the flavonoid biosynthesis in potato tubers. In particular, StCYP705A-like was further validated for its potential role in this process. Employing Gfanno software in conjunction with RNA-seq data, seven StCYP genes (Two StC4H, three StF3′H, one StFNS Ⅱ and one StF3′5′H) were identified as flavonoid biosynthetic pathway genes in potato. Additionally, five StCYPs in CYP 71 clan demonstrated a strong association with flavonoid biosynthesis. These findings lay a groundwork for a more comprehensive understanding of the StCYP gene family and further exploration of the functions of StCYP genes in potato abiotic stress tolerance and flavonoids biosynthesis.

研究重点是细胞色素P450(CYP)超家族,这是一个参与植物新陈代谢的重要酶家族。研究人员通过系统学分析、理化特征分析、染色体定位、基因结构和保守蛋白域分类、基因重复发生率、共线性和表达模式分析等多种方法,对马铃薯基因组中的 253 个 StCYP 基因进行了研究和特征分析。253 个 StCYPs 被分为 7 个族和 33 个科,不均匀地分布在 12 条染色体上。共线性分析显示,马铃薯 StCYPs 和拟南芥 AtCYPs 之间存在 28 对同源基因。此外,利用PGSC数据库中的RNA-seq数据,研究了在非生物胁迫和外源激素处理下,StCYPs在双倍单倍体(DM)马铃薯各组织部位的表达情况。结果发现,一个 StCYP 基因可能通过 ABA 依赖性途径参与干旱胁迫响应。此外,通过对三个马铃薯克隆在三个发育阶段的色素块茎肉进行RNA-seq分析,发现了可能与马铃薯块茎中黄酮类化合物生物合成有关的StCYPs。特别是进一步验证了 StCYP705A-like 在这一过程中的潜在作用。利用 Gfanno 软件和 RNA-seq 数据,7 个 StCYP 基因(2 个 StC4H、3 个 StF3′H、1 个 StFNS Ⅱ 和 1 个 StF3′5′H)被鉴定为马铃薯中的类黄酮生物合成途径基因。此外,CYP 71 家族中的五个 StCYP 与黄酮类化合物的生物合成密切相关。这些发现为更全面地了解 StCYP 基因家族以及进一步探索 StCYP 基因在马铃薯非生物胁迫耐受性和类黄酮生物合成中的功能奠定了基础。
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Food Bioscience
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