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Production of Encapsidated RNA Particles as a Working Standard in Detecting Foodborne Viruses in Oysters 壳载RNA颗粒的制备作为检测牡蛎食源性病毒的工作标准
Pub Date : 2023-04-03 DOI: 10.12982/nlsc.2023.034
Uraiwan Intamaso, P. Chutoam, Suthasinee Jinda, Supannee Lethochavalit
Monitoring foodborne viruses via nucleic acid amplification tests rely on stable RNA standards to obtain reliable testing. This study aimed to produce RNA-based standard reagents for hepatitis virus (HAV) or norovirus detections which relies on viral-like particle (VLP) technology. Using a plasmid packaging system, plasmids containing DNA encoding Qβcoat protein (CP) monomer and the VP1 gene of viruses were co-transformed into E. coli host cells. In cell lysates, expressed CP was characterized by western blot and the whole icosahedral formation of VLPs was proved by electron microscope analysis. Encapsidated RNAs were measured and assessed as a standard by a two-step reverse transcription recombinase polymerase amplification (RT-RPA). Our results showed that CP has a distinguished protein band with a molecular weight of 14.5 kDa but a few variabilities of particle size were visualized. When adjusting the pH of the lysate to lower than 6, a more intense protein band and substantial particles with homogenous particle size were observed. These VLPs were found to enclose HAV and norovirus RNA contents to 1.2×107 copies/ng and 1.9×107 copies/ng, respectively. When analyzed by RT-RPA, linear regression analysis confirmed the alternative application of RNAs enclosed in VLPs to naked RNA synthesized from in vitro transcription. Using the E. coli expression system to produce Qβ VLPs allows cost-effective production and, therefore, can be implemented in laboratories with basic equipment. These encapsidated RNAs may become an ideal “standard” for detecting foodborne viruses via a molecular test in food and clinical samples. Keywords: Molecular testing, Nanoparticles, Nucleic amplification, RNA standards, Viral-like particles
通过核酸扩增检测监测食源性病毒依赖于稳定的RNA标准来获得可靠的检测。本研究旨在建立基于rna的病毒样颗粒(VLP)技术检测肝炎病毒(HAV)或诺如病毒的标准试剂。利用质粒包装系统,将编码q β外壳蛋白(CP)单体的DNA与病毒VP1基因的质粒共转化到大肠杆菌宿主细胞中。在细胞裂解物中,用western blot对表达的CP进行了表征,并用电镜分析证实了VLPs的完整二十面体结构。通过两步逆转录重组酶聚合酶扩增(RT-RPA)测量和评估封装的rna作为标准。结果表明,CP具有明显的蛋白带,分子量为14.5 kDa,但颗粒大小有一定的变化。当酶解液的pH值低于6时,酶解液的蛋白条带更强,颗粒更丰富,粒径均匀。发现这些VLPs将甲型肝炎病毒和诺如病毒的RNA含量分别包裹到1.2×107 copies/ng和1.9×107 copies/ng。在RT-RPA分析中,线性回归分析证实了VLPs中封闭RNA与体外转录合成的裸RNA的替代应用。使用大肠杆菌表达系统生产Qβ VLPs具有成本效益,因此可以在具有基本设备的实验室中实施。这些被封装的rna可能成为通过在食品和临床样本中进行分子测试来检测食源性病毒的理想“标准”。关键词:分子检测,纳米颗粒,核酸扩增,RNA标准,病毒样颗粒
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引用次数: 0
Differences in Ankle Dorsiflexion Deficit Performance between Male and Female Athletes with a History of Lateral Ankle Sprain: The Functional Pre-Participation Evaluation 有踝关节外侧扭伤史的男性和女性运动员踝关节背屈缺陷表现的差异:功能性参与前评估
Pub Date : 2023-04-03 DOI: 10.12982/nlsc.2023.017
D. Tinduh, B. Purwanto, Andre Triadi Desnantyo
The objective of this study was to determine the effects of deficit of ankle dorsiflexion in athletes who sustained a chronic lateral ankle sprain to the hopping performance. A comparative study was designed to compare the deficit and non-deficit condition of ankle dorsiflexion as a result of the weight bearing lunges test to distance hopping ability with single leg hop, which was normalized with leg length. There were no statistically significant differences in hopping performance, deficit vs non-deficit ankle dorsiflexion within-group comparisons in males (P = 0.932) or females (P = 0.999). Between group comparisons showed that ankle dorsiflexion deficit among female resulted lower hopping performance compared to male with / without ankle dorsiflexion deficit (P = 0.041 and P = 0.039). Surprisingly, hopping performance among male with ankle dorsiflexion deficit was further than female without ankle dorsiflexion deficit (P = 0.044). Meanwhile, hopping performance between male versus female without ankle dorsiflexion deficit were not significant (P = 0.054). The deficit of ankle dorsiflexion had no influence on hopping performance in athlete with a history of LAS, both male and female. Sex influenced hopping performance in athletes with ankle dorsiflexion deficits, with female athletes performing worse than male. During recovery, there might be differences in biomechanical adaptation between ankle dorsiflexion deficit conditions in female athletes compared to male. Keywords: Ankle-dorsiflexion deficit, Sex, Ankle sprain, Hopping distance, Adaptaion
本研究的目的是确定长期踝关节外侧扭伤的运动员踝关节背屈缺陷对跳跃表现的影响。将负重弓步试验中踝关节背屈不足和无不足情况与单腿跳跳远能力进行对比研究,并将单腿跳跳远能力与腿长归一化。男性和女性在跳跃表现、缺陷与非缺陷踝关节背屈的组内比较(P = 0.932)和组内比较(P = 0.999)无统计学差异。组间比较显示,踝关节背屈不足的女性跳远表现低于有或没有踝关节背屈不足的男性(P = 0.041和P = 0.039)。令人惊讶的是,有踝关节背屈缺陷的男性比没有踝关节背屈缺陷的女性跳得更好(P = 0.044)。同时,无踝关节背屈缺陷的男女跳跃性能差异无统计学意义(P = 0.054)。踝关节背屈不足对有LAS病史的运动员的跳跃表现无影响,无论男女。性别影响踝关节背屈缺陷运动员的跳跃表现,女性运动员比男性运动员表现更差。在恢复过程中,女性运动员与男性运动员相比,踝关节背屈缺陷的生物力学适应可能存在差异。关键词:踝关节背屈不足,性别,踝关节扭伤,跳跃距离,适应
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引用次数: 0
Protective Effect of Curcuma domestica and Curcuma xanthorrhiza Extracts toward Kidney, Liver, and Pancreatic Organ Dysfunction in Streptozotocin-Induced Diabetes Mellitus Mice 姜黄提取物对链脲佐菌素所致糖尿病小鼠肾、肝、胰器官功能障碍的保护作用
Pub Date : 2023-04-03 DOI: 10.12982/nlsc.2023.029
Y. Nindita, Astika Widy Utomo, Nani Maharani, Endang Mahati, Ilham Fernando Kristiandi, Irfan Kesumayadi, E. Kurniawati, M. A. Sobirin, N. Wijayahadi
The complications of Diabetes mellitus (DM) in Indonesia still need attention. Curcuma are often used as complementary medicine for antidiabetic. There is no study has been found comparing the effect of Curcuma domestica extracts (CDE) and Curcuma xanthorrhiza extracts (CXE) on the progression of the kidney, liver, and pancreas dysfunction in the mice with streptozotocin (STZ)-induced DM. This study was an experimental study to compare the effect of CDE and CXE on the progression of multi-organ dysfunction such as kidney, liver, and pancreas. The extract was produced by a maceration process with composition 100 gr simplicial and 300 ml ethanol 70%. The mice were induced with 180 mg/kgBW STZ intraperitoneally. The CDE and CXE were given 100 mg/kgBW orally for 21 days. A blood glucose was measured by a glucose meter on days 0, 1, and 21. The histopathological examination of the kidney, liver and pancreas were done on 21 days after the treatment. Data were analyzed using One Way ANOVA and Kruskal-Wallis tests (P <0.05). The results revealed that blood glucose levels showed no significant reduction of CDE and CXE after 21 days of the treatment. Histopathological examination showed a significant protection in kidney inflammation, kidney fibrosis, and pancreatic inflammation (P =0.001, P =0.013, P =0.027 respectively) in CDE and CXE groups. No significant differences were examined in liver inflammation, liver fibrosis, and pancreatic inflammation (P =0.184, P =0.498, P =0.193 respectively). However, there was a significant improvement in liver inflammation by CXE treatment (P =0.041). CXE has a greater potential for hepatoprotective effect compared to CDE. Keywords: Curcuma extract, Organ dysfunction, Inflammation, Diabetes mellitus, Mice
印度尼西亚的糖尿病(DM)并发症仍需引起重视。姜黄常被用作抗糖尿病的补充药物。目前尚未发现姜黄提取物(Curcuma domestica extract, CDE)和姜黄提取物(Curcuma xanthorza extract, CXE)对链脲佐菌素(STZ)诱导的DM小鼠肾、肝、胰腺功能障碍进展的影响。本研究是比较姜黄提取物和CXE对肾、肝、胰腺等多器官功能障碍进展的影响的实验研究。以100克纯碱和300毫升70%乙醇浸渍法制备提取物。小鼠腹腔注射180 mg/kgBW STZ诱导。CDE和CXE分别给予100 mg/kgBW口服21 d。在第0、1和21天用血糖仪测量血糖。治疗后第21天行肾、肝、胰腺组织病理检查。数据分析采用单因素方差分析和Kruskal-Wallis检验(P <0.05)。结果显示,治疗21天后,血糖水平显示CDE和CXE没有显著降低。组织病理学检查显示,CDE组和CXE组对肾脏炎症、肾脏纤维化和胰腺炎症均有显著保护作用(P =0.001, P =0.013, P =0.027)。肝脏炎症、肝纤维化、胰腺炎症无显著性差异(P =0.184、P =0.498、P =0.193)。然而,CXE治疗对肝脏炎症有显著改善(P =0.041)。与CDE相比,CXE具有更大的肝保护作用潜力。关键词:姜黄提取物,器官功能障碍,炎症,糖尿病,小鼠
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引用次数: 0
Multifunctional Biological Activities and Cytotoxic Evaluation of Bouea macrophylla for Cosmetic Applications 美容用大叶花的多功能生物学活性及细胞毒性评价
Pub Date : 2023-04-03 DOI: 10.12982/nlsc.2023.030
Pawarisa Maneechai, P. Leelapornpisid, Worrapan Poomanee
This study aimed to investigate the biological activities, cytotoxicity, phytochemical constituents and stability profile of Bouea macrophylla Griff. peel extracts for cosmeceutical applications. Extraction using maceration or fractionation was optimized using various solvents; ethyl acetate, ethanol, 50%v/v ethanol. The antioxidant activities were determined using DPPH and ABTS radical scavenging, lipid peroxidation inhibition and FRAP assays. Anti-tyrosinase activity was also performed for implying skin depigmentation effects. Total phenolics content, total flavonoids content and total anthocyanin content were also investigated. In addition, ex vivo cytotoxicity and anti-inflammatory effects of the selected extract were studied. Moreover, high performance liquid chromatography (HPLC) technique was used to analyze and quantify phytochemical components of the extract to study the stability profile. The results revealed that the highest percentage yield was shown in hydroethanolic extract (BPHE). Regarding phytochemical contents, BPHE contained 83.91 ± 0.00 mg gallic acid equivalent (GAE)/g extract, 12.98 ± 0.01 mg quercetin equivalent (QE)/g extract. Additionally, BPHE exhibited the strongest antioxidant and anti-tyrosinase properties along with good anti-inflammatory effects. Furthermore, BPHE had no cytotoxicity to human fibroblast cells. The HPLC results showed two major peaks in BPHE, i.e., gallic and ellagic acids. Accordingly, B. macrophylla peel extract could be a promising bioactive ingredient to develop further as anti-aging cosmetic and cosmeceutical products. Keywords: Bouea macrophylla Griff. peel extract, Antioxidant, Anti-tyrosinase, Anti-inflammatory, Cytotoxicity
摘要本研究旨在研究大叶布的生物活性、细胞毒性、植物化学成分及稳定性。药妆用果皮提取物。在不同溶剂条件下,对浸渍法和分馏法进行了优化;乙酸乙酯乙醇50%v/v乙醇通过DPPH和ABTS自由基清除、脂质过氧化抑制和FRAP测定其抗氧化活性。抗酪氨酸酶活性也被用于暗示皮肤脱色作用。测定了总酚类物质含量、总黄酮含量和总花青素含量。此外,还研究了所选提取物的体外细胞毒性和抗炎作用。此外,采用高效液相色谱(HPLC)技术对提取物的植物化学成分进行分析和定量,研究其稳定性。结果表明,氢乙醇提取物(BPHE)的产率最高。在植物化学成分方面,BPHE的没食子酸当量(GAE)为83.91±0.00 mg /g,槲皮素当量(QE)为12.98±0.01 mg /g。此外,BPHE具有较强的抗氧化和抗酪氨酸酶活性,并具有良好的抗炎作用。此外,BPHE对人成纤维细胞无细胞毒性。HPLC结果显示,BPHE中没有食子酸和鞣花酸两个主要峰。因此,巨叶藻皮提取物作为抗衰老化妆品和药妆品的生物活性成分有进一步开发的潜力。关键词:大叶菊;果皮提取物,抗氧化,抗酪氨酸酶,抗炎,细胞毒性
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引用次数: 0
Application of Non-thermal Plasma-Activated Liquid for Delay Browning in an Apple Slice 非热等离子体活化液在苹果片延缓褐变中的应用
Pub Date : 2023-04-03 DOI: 10.12982/nlsc.2023.018
W. Nupangtha, Kamtorn Saidarasamoot, Suebsak Suksaengpanomrung
The color of fresh-cut fruits is indicated by the appearance and quality of their products. A sliced apple is a highly putrefying fruit that is sensible to react with oxygen gas, which causes the color, taste, smell, and nutritional value to change during storage in ambient air. Non-thermal atmospheric pressure plasma jet (NTAPPJ) is one of the most crucial applications for food preservation. This study was divided into two parts. First, the emission intensities of the plasma spectrum and electrical properties were investigated. Then, the colorimetric was used to investigate plasma-treated effects on different liquids (tap water, deionized water, and saline water) to delay color changes of fresh-cut apples. The I-V characteristic curve was used to obtain an optimal power of 8.5 kHz-AC pulse-driven NTAPPJ with argon gas. Additionally, the parameter a*, L*, b*, ΔE, h*, YI, Chroma, and browning index (BI) using the colorimeter method were examined. We then demonstrated that using the Ar-NTAPPJ can be considered a novel approach to increasing fresh-cut apple’ toleration and shelf life. Furthermore, plasma exposure is one of the nondestructive processes that does not have any side effects on the products and can significantly delay degradation and discoloration. Keywords: Plasma jet, Shelf life, Colorimeter, Browning index
鲜切水果的颜色是由其产品的外观和质量决定的。切片的苹果是一种高度腐烂的水果,它很容易与氧气发生反应,在空气中储存期间,氧气会导致苹果的颜色、味道、气味和营养价值发生变化。非热大气压等离子体射流(NTAPPJ)是食品保鲜最重要的应用之一。本研究分为两部分。首先,研究了等离子体光谱的发射强度和电学特性。然后,用比色法研究了等离子体处理不同液体(自来水、去离子水和盐水)对鲜切苹果颜色变化的延缓作用。利用I-V特性曲线得到了8.5 khz ac氩气脉冲驱动NTAPPJ的最优功率。此外,还采用比色法检测了a*、L*、b*、ΔE、h*、YI、Chroma和褐变指数(BI)。我们随后证明,使用Ar-NTAPPJ可以被认为是一种提高鲜切苹果耐受性和保质期的新方法。此外,等离子体暴露是一种非破坏性的过程,对产品没有任何副作用,可以显著延缓降解和变色。关键词:等离子射流,保质期,比色计,褐变指数
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引用次数: 0
The Effects of Tok Sen Massage Menu for Relaxation on Muscle Flexibility and Relaxation among Use of Received the Lanna Spa Service for Health Tourism 托森放松按摩菜单对健康旅游中接受兰纳水疗服务的人肌肉柔韧性和放松的影响
Pub Date : 2023-04-03 DOI: 10.12982/nlsc.2023.031
N. Sansiriphun, Jirawan Deeluea, Preeyakamon Krikitrat, A. Klunklin
In spas in northern Thailand, Tok Sen massage is one aspect of the wisdom of health care in northern communities; it stimulates better functioning of blood circulation, the lymphatic system, and the nervous system, while helping to relieve pain, stiffness, and fatigue in various body parts, due to muscle flexibility and relaxation. This study aimed to examine the effects of Tok Sen massage for relaxation on muscle flexibility and relaxation. A randomized controlled trial enrolled 80 persons who met the inclusion criteria and were willing to participate in the Lanna Spa Service for Health Tourism between January and March 2022. They were randomly assigned to an experimental group (n=40) who received the Tok Sen massage for relaxation, and a control group (n=40) who were instructed to lie down in a comfortable environment without receiving a massage. Data were collected using a demographic form, a muscle flexibility record form, a relaxation assessment form, an automatic blood pressure and pulse monitor, a ruler, and the sit-and-reach tester. Demographic data were analyzed using descriptive statistics. Differences between groups were compared using Fisher's exact test, independent t-test, and the Mann-Whitney U test. The results showed that there was a statistically significant difference between the experimental group and the control group in the flexibility of the lower back muscles, hamstring muscles, hip muscles, shoulders, scapula, chest, and arm muscles (P < .01), and in relaxation (P < .001). The findings support the effectiveness of the Tok Sen massage menu on promoting muscle flexibility and relaxation. Keywords: Tok Sen massage, Muscle flexibility, Relaxation
在泰国北部的水疗中心,托克森按摩是北部社区保健智慧的一个方面;它刺激血液循环、淋巴系统和神经系统更好地运作,同时由于肌肉的柔韧性和放松,有助于缓解身体各部位的疼痛、僵硬和疲劳。本研究旨在探讨托森按摩放松对肌肉柔韧性和放松的影响。一项随机对照试验招募了80名符合纳入标准并愿意在2022年1月至3月期间参加兰纳健康旅游水疗服务的人。他们被随机分配到实验组(n=40),实验组接受托克森按摩放松,对照组(n=40)被指示躺在舒适的环境中,不接受按摩。数据收集使用人口统计表、肌肉柔韧性记录表、放松评估表、自动血压和脉搏监测仪、尺子和坐伸测试仪。人口统计数据采用描述性统计进行分析。采用Fisher精确检验、独立t检验和Mann-Whitney U检验比较组间差异。结果显示,实验组与对照组在下背部肌肉、腘绳肌、髋部肌肉、肩部、肩胛骨、胸部、手臂肌肉的柔韧性及放松度上均有统计学差异(P < 0.01),差异有统计学意义(P < 0.001)。研究结果支持了托森按摩菜单在促进肌肉柔韧性和放松方面的有效性。关键词:托森按摩,肌肉柔韧性,放松
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引用次数: 0
Metformin Mitigates Memory Impairment of Diabetic Mice through Modulation of Plasma Pro-inflammatory Cytokines and Aβ1-42 Levels 二甲双胍通过调节血浆促炎细胞因子和a - β1-42水平减轻糖尿病小鼠记忆障碍
Pub Date : 2023-01-05 DOI: 10.12982/nlsc.2023.001
Yoottana Janthakhin, S. Kingtong, Chutima Aphibanthammakit, Sirikran Juntapremjit
Abstract Experimental and clinical studies reported that type 2 diabetes mellitus (T2DM) is associated with cognitive dysfunction and promotes the onset of dementia. Metformin is an antihyperglycemic drug used for the treatment of T2DM. A growing number of evidence revealed neuroprotective, antioxidant, and anti-inflammation effects exerted by metformin. The present study aimed to investigate the effect of metformin on cognitive function, systemic proinflammatory cytokines and amyloid-beta 1-42 (Aβ1-42) which is a pathological hallmark of Alzheimer’s disease (AD) in diabetic mice. C57BL/6N mice were divided into the following experimental groups: normal control group (NC); diabetes mellitus group (DM) induced by a high-fat diet combined with streptozotocin (STZ) injection; diabetes mellitus treated with metformin 100 mg/kg (DM+Met). Cognitive performance was evaluated by the novel object recognition test (NORT). Systemic proinflammatory cytokines and Aβ1-42 were assessed by the enzyme-linked immunosorbant assay (ELISA) test. We found that diabetic mice exhibited cognitive impairment in NORT whereas the treatment with metformin restored the cognitive function of diabetic mice. Moreover, diabetic mice presented an increase in plasma IL-6 and TNF-α levels while Aβ1-42 was decreased when compared to NC mice. Nevertheless, the administration of metformin allowed the levels of plasma IL-6, TNF-α, and Aβ1-42 to normalize in diabetic mice. Taken together, our findings suggest that metformin improves the cognitive function of diabetic mice possibly via the modulation of plasma pro-inflammatory cytokines and Aβ1-42 levels. Metformin may potentially be used as a therapeutic agent for patients with T2DM who show cognitive deficits. Keywords: Diabetes mellitus, Cognitive impairments, Pro-inflammatory cytokines, Amyloid-beta, Metformin
实验和临床研究报道,2型糖尿病(T2DM)与认知功能障碍相关,并促进痴呆的发生。二甲双胍是一种用于治疗2型糖尿病的降糖药物。越来越多的证据显示二甲双胍具有神经保护、抗氧化和抗炎症作用。本研究旨在探讨二甲双胍对糖尿病小鼠认知功能、全身促炎细胞因子和阿尔茨海默病(AD)病理标志淀粉样蛋白- β1-42 (a β1-42)的影响。将C57BL/6N小鼠分为正常对照组(NC);高脂饮食联合链脲佐菌素(STZ)诱导的糖尿病组;二甲双胍100 mg/kg (DM+Met)治疗糖尿病。通过新目标识别测试(NORT)评估认知能力。采用酶联免疫吸附试验(ELISA)检测全身性促炎因子和Aβ1-42。我们发现糖尿病小鼠在NORT中表现出认知障碍,而二甲双胍治疗可以恢复糖尿病小鼠的认知功能。此外,与NC小鼠相比,糖尿病小鼠血浆IL-6和TNF-α水平升高,而Aβ1-42水平降低。然而,给药二甲双胍可使糖尿病小鼠血浆IL-6、TNF-α和a - β1-42水平恢复正常。综上所述,我们的研究结果表明,二甲双胍可能通过调节血浆促炎细胞因子和a - β1-42水平来改善糖尿病小鼠的认知功能。二甲双胍可能作为一种潜在的治疗药物用于有认知缺陷的2型糖尿病患者。关键词:糖尿病,认知障碍,促炎因子,β -淀粉样蛋白,二甲双胍
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引用次数: 0
Root Yield and Starch Synthase Type IV Gene Activity under Different Micro Nutrient Fertilizer and Harvest Ages on Cassava (Manihot esculenta Crantz) 不同微肥和采收年龄对木薯根系产量和淀粉合成酶IV型基因活性的影响
Pub Date : 2023-01-05 DOI: 10.12982/nlsc.2023.002
K. Setiawan, P. B. Timotiwu, Agustiansyah, M. S. Hadi, M. Kamal, Ardian, W. Setiawan
Abstract The important part of cassava root is starch which is probably controlled by starch synthase type IV (SSIV) gene. The information of micro nutrient and harvest age related to the activity starch synthase type IV (SSIV) gene is still very rare. The objectives of this study were to evaluate root fresh weight of cassava, to compare yield of storage root, and to evaluate the activity of starch synthase type IV (SSIV) gene by real-time quantitative polymerase chain reaction (RT-PCR) applied by micro nutrient fertilizer. Treatments were arranged by factorial (3 × 3) in randomized complete block design (RCBD) with three replications used as block. The first factor was three different dosages of micro nutrient fertilizer as 0, 20, and 40 kg/ha. The second factor was harvest ages as 7, 8, and 10 months after planting (MAP). The micro nutrient fertilizer mainly contents of 5,888 ppm Fe and 1,368 ppm Zn. Variables were leaf number (LN), leaf fresh weight (LFW), leaf dry weight (LDW), stem fresh weight (SFW), stem dry weight (SDW), root fresh weight (RFW), root dry weight (RDW), skin root fresh weight (SRFW), skin root dry weight (SRDW), starch content, and activity of SSIV gene. The result showed that RDW of cassava applied by 40 kg micro nutrient/ha was significantly increased at 10 MAP. The increase in RDW was due to mainly high SSIV gene activity. Additionally, the SSIV gene activity caused by 20 kg micro nutrient/ha treatment showed almost as twice as those by 40 kg micro nutrient/ha. Keywords: Real-time PCR, Root dry weight, Root yield, Starch, Stem dry weight
木薯根的重要组成部分是淀粉,淀粉可能受淀粉合酶IV型(SSIV)基因控制。与活性淀粉合成酶IV型(SSIV)基因相关的微量营养素和采收年龄信息仍然很少。本研究采用实时定量聚合酶链反应(RT-PCR)技术评价微营养肥对木薯根鲜重、贮藏根产量的影响,并对木薯淀粉合成酶IV型(SSIV)基因活性进行评价。采用随机完全区组设计(RCBD),以3个重复为区组,按因子(3 × 3)排列处理。第一个因素是施用0、20、40 kg/ hm2的微量营养肥。第二个影响因素是种植后7、8和10个月的收获年龄(MAP)。微量营养肥主要含铁5888 ppm、锌1368 ppm。变量为叶片数(LN)、叶鲜重(LFW)、叶干重(LDW)、茎鲜重(SFW)、茎干重(SDW)、根鲜重(RFW)、根干重(RDW)、皮根鲜重(SRFW)、皮根干重(SRDW)、淀粉含量和SSIV基因活性。结果表明:在10 MAP时,施用40 kg微量养分/ hm2显著提高了木薯的RDW。RDW的增加主要是由于高SSIV基因活性。此外,20 kg微养分/ha处理引起的SSIV基因活性几乎是40 kg微养分/ha处理的2倍。关键词:实时荧光定量PCR,根干重,根产量,淀粉,茎干重
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引用次数: 0
A Bibliometric Analysis of Indonesia Biodiversity Identification through DNA Barcoding Research from 2004-2021 2004-2021年印度尼西亚生物多样性DNA条形码鉴定的文献计量学分析
Pub Date : 2023-01-05 DOI: 10.12982/nlsc.2023.006
D. Priyono, Fajar Sofyantoro, Wahyu Aristyaning Putri, Nur Indah Septriani, Annas Rabbani, Tuty Arisuryanti
Abstract Indonesia is well-known for having a vast and rich endowment of unique and genetically diverse biodiversity resources. Currently, initiatives are taking place around the world to generate DNA barcode libraries to make these data available to better understand biodiversity. The objectives of this study are to document DNA barcode research trends and detect the extent to which its application has evolved in Indonesia. The analysis was investigated using a compilation of 446 published papers, obtained from Harzing's Publish or Perish 8. The number of DNA barcode publication records has increased by a geometric average of 15.4/year. The number of studies involving molecular identification (30.1%), species and genetic diversity (10%), and evolutionary or phylogenetic studies (10%) appears to have driven much of the publication activity. The top three taxa studied include fishes (32.7%), plants (24.8%), and invertebrates (12.5%; except insects). We discovered that using a single molecular marker is still dominant (62.8%). We conclude that the practices of DNA barcoding data are likely to become a valuable resource in many sectors and focuses. However, the number of Indonesian DNA barcode records in public databases is relatively lower than in other mega biodiversity countries. The establishment of DNA barcoding initiatives and a national DNA barcode reference library in Indonesia would promote DNA barcoding applications to help conserve Indonesia biodiversity. Keywords: Biodiversity, DNA barcode, Indonesia, Research trends
印度尼西亚以拥有巨大而丰富的独特和遗传多样性生物多样性资源而闻名。目前,世界各地正在采取行动,建立DNA条形码文库,使这些数据能够更好地了解生物多样性。本研究的目的是记录DNA条形码的研究趋势,并检测其应用在印度尼西亚的发展程度。这项分析是通过对446篇已发表论文的汇编进行调查的,这些论文来自哈zing的《要么发表,要么灭亡》。DNA条形码出版记录的数量以每年15.4份的几何平均速度增长。涉及分子鉴定(30.1%)、物种和遗传多样性(10%)以及进化或系统发育研究(10%)的研究数量似乎推动了大部分出版活动。研究的前三大分类群包括鱼类(32.7%)、植物(24.8%)和无脊椎动物(12.5%);昆虫除外)。我们发现使用单一分子标记仍然占主导地位(62.8%)。我们的结论是,DNA条形码数据的实践很可能成为许多领域和重点的宝贵资源。然而,印度尼西亚在公共数据库中的DNA条形码记录数量比其他生物多样性大国要少。在印度尼西亚建立DNA条形码倡议和国家DNA条形码参考图书馆将促进DNA条形码的应用,以帮助保护印度尼西亚的生物多样性。关键词:生物多样性,DNA条形码,印度尼西亚,研究趋势
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引用次数: 1
Development of a Reverse Transcription-Recombinase Polymerase Amplification Assay for Duplex Detection of Foodborne Viruses in Oysters 逆转录-重组酶聚合酶扩增法在牡蛎食源性病毒双重检测中的应用
Pub Date : 2023-01-05 DOI: 10.12982/nlsc.2023.008
P. Chutoam, Suthasinee Jinda, Supannee Lethochavalit, Uraiwan Intamaso
Abstract Viral contamination may occur at any stage of food processing. The study aim was to develop a two-step reverse transcription (RT)-recombinase polymerase amplification (RPA) assay and evaluate for in-field duplex detection of hepatitis A virus (HAV) and norovirus in oysters. The RNA expression plasmids were generated by amplifying a fragment of the VP1 gene of HAV and norovirus through PCR and cloning it into an expression vector. The RNAs were transcribed in vitro from the plasmids and further used for reverse transcription. The resulting single-stranded cDNAs were used as the purified or spiking templates to determine the sensitivities of simplex and duplex RT-RPA compared with RT-PCR, and RT-qPCR assays. The reproducibility and application of duplex RT-RPA in the field were also evaluated. Our results showed that simplex RT-RPA was at least 100 times more sensitive than RT-PCR and RT-qPCR and even more than duplex detection using purified targets. Unlike RT-PCR, the RT-RPA reaction was unaffected by inhibitors found in food, allowing simple sample preparation methods for detection within a fraction of the time. The duplex assay detected HAV, norovirus, or both in 12/30 (40%) oyster samples tested. Duplex RT-RPA proved to be a rapid, accurate, and reproducible method in a field test for detecting HAV and norovirus. Thus, duplex RT-RPA should be suitable for use in minimally equipped laboratories and field settings. If in-field RT-RPA services are provided to oyster farmers, the technique can minimize the risk of infection to consumers, thereby improving food safety. Keywords: Food safety, Hepatitis A virus, Direct extraction, Norovirus, Nucleic acid amplification
病毒污染可能发生在食品加工的任何阶段。本研究旨在建立两步反转录(RT)-重组酶聚合酶扩增(RPA)方法,并对牡蛎中甲型肝炎病毒(HAV)和诺如病毒的现场双工检测方法进行评价。将甲肝病毒和诺如病毒的VP1基因片段通过PCR扩增后克隆为表达载体,制备RNA表达质粒。这些rna在体外从质粒中转录,并进一步用于逆转录。将得到的单链cdna作为纯化或扩增模板,与RT-PCR和RT-qPCR相比,测定单链RT-RPA和双链RT-RPA的敏感性。并对双相RT-RPA的再现性及其在野外的应用进行了评价。我们的研究结果表明,单一RT-RPA的灵敏度至少是RT-PCR和RT-qPCR的100倍,甚至超过使用纯化靶标的双工检测。与RT-PCR不同,RT-RPA反应不受食物中发现的抑制剂的影响,允许在一小部分时间内使用简单的样品制备方法进行检测。在12/30(40%)的牡蛎样品中检测到甲肝病毒、诺如病毒或两者兼有。双相RT-RPA是一种快速、准确、可重复的检测甲肝病毒和诺如病毒的方法。因此,双相RT-RPA应适用于设备最少的实验室和现场环境。如果向牡蛎养殖户提供现场RT-RPA服务,该技术可以将消费者感染的风险降至最低,从而提高食品安全。关键词:食品安全,甲型肝炎病毒,直接提取,诺如病毒,核酸扩增
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引用次数: 0
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Natural and Life Sciences Communications
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