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Circular genetic structure of the Abies nephrolepis species complex shaped by the circular landform of Northeast Asia 东北亚环形地貌塑造出的云杉物种群的环形遗传结构
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-04-12 DOI: 10.1111/jbi.14841
Myounghai Kwak, Koh Nakamura, Qiaoping Xiang, Jun Wen, Eun Sil Lee, Jaram Hong, Nataliya Kovtonyuk, Maria Kryukova, Olga Korchagina, Kyung Ah Koo, Masakazu G. Iwaizumi, Byoung Yoon Lee, Goro Kokubugata, Xianchun Zhang, Dmitry Lebedev
<div> <section> <h3> Aim</h3> <p>Pinaceae have been noted for their tendency towards reticulation as a result of interspecific hybridization. Here, we demonstrated the phylogeographic dynamics of the native Northeast Asian sub-alpine conifer, <i>Abies nephrolepis</i> species complex (ANSC), evolving in circular overlaps along the Northeast Asian landform, which functions as a corridor with the sea, thus acting as a geographic barrier.</p> </section> <section> <h3> Location</h3> <p>Northeast Asia: the Korean Peninsula, Japanese Archipelago, Russian Far East and northeastern China.</p> </section> <section> <h3> Taxon</h3> <p><i>Abies nephrolepis</i> species complex (Family Pinaceae, Genus <i>Abies</i>, Section <i>Balsamea</i>, <i>Abies nephrolepis, A. koreana, A. veitchii</i> and <i>A. sachalinensis</i>).</p> </section> <section> <h3> Methods</h3> <p>A total of 728 individuals from 38 ANSC populations were analysed using multiplexed inter-simple sequence repeat genotyping by sequencing to capture variations in biparental nuclear genomes. Eight mitochondrial regions and eight chloroplast regions of each individual were sequenced using the MiSeq platform and Sanger sequencing. Species distribution models were generated.</p> </section> <section> <h3> Results</h3> <p>Bayesian clustering with 507 nuclear single nucleotide polymorphisms and the discrepancy between cytoplasmic and nuclear genome lineages implied contemporary and ancient connections between neighbouring species in the form of circular overlap. This genetic connectivity was supported by principal component analysis. Strong correlations between genetic distance and geographic distance were observed, suggesting that gene flow occurs through a continuous chain around the sea. We also found that gene flow direction and intensity changed over time, with support from palaeodistribution modelling.</p> </section> <section> <h3> Conclusion</h3> <p>Past hybridization events were captured in cytoplasmic genomes, generating heterogeneity across maternal ancestries. This intensive phylogeographic study demonstrates speciation with incomplete reproductive isolation (continuous gene flow) among neighbouring species with an alteration of the direction and intensity of gene flow due to climate change. The divergence of ANSC due to repeated isolation and reconnection caused by heterogenous physiological environments and climate fluctuation provides a model to solve evolutionary scenarios for reticulate evolution in Pinaceae and other
目的松科植物因种间杂交而具有网状分布的趋势而备受关注。在这里,我们展示了东北亚亚高山针叶树(Abies nephrolepis species complex,ANSC)的系统地理学动态,它沿着东北亚地形呈环状重叠演化,而东北亚地形是通往海洋的走廊,因此起到了地理屏障的作用。方法利用多重简单序列间重复基因分型测序技术对来自 38 个 ANSC 种群的 728 个个体进行分析,以捕捉双亲核基因组的变异。利用 MiSeq 平台和 Sanger 测序法对每个个体的 8 个线粒体区域和 8 个叶绿体区域进行了测序。结果 507 个核单核苷酸多态性的贝叶斯聚类以及细胞质基因组和核基因组世系之间的差异暗示了相邻物种之间以环状重叠形式存在的当代和远古联系。主成分分析证实了这种遗传联系。我们观察到遗传距离与地理距离之间存在很强的相关性,这表明基因流动是通过环海的连续链条进行的。我们还发现,基因流动的方向和强度随着时间的推移而变化,这一点得到了古分布模型的支持。这项深入的系统地理学研究表明,相邻物种之间存在不完全的生殖隔离(持续的基因流),而气候变化改变了基因流的方向和强度。异源生理环境和气候变化导致的反复隔离和重新连接所造成的 ANSC 分歧为解决松科和其他植物网状进化的演化情景提供了一个模型。
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引用次数: 0
Spatial phylogenetics of Fagales: Investigating drivers of temperate forest distributions 椑科植物的空间系统发育:调查温带森林分布的驱动因素
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-04-10 DOI: 10.1111/jbi.14840
R. A. Folk, C. M. Siniscalchi, J. Doby, H. R. Kates, S. R. Manchester, P. S. Soltis, D. E. Soltis, R. P. Guralnick, M. Belitz

Aim

Quantifying the phylogenetic diversity of temperate trees is essential for understanding the processes that have shaped the modern distribution of temperate broadleaf forest and other major forest biomes. Here, we focus on Fagales, an iconic member of forests worldwide, to uncover global diversity and endemism patterns and investigate the distribution of root nodule symbiosis (RNS), an important morphological specialisation in this clade, as a key factor behind these patterns.

Location

Global.

Taxon

Fagales.

Methods

We combined phylogenetic data covering 60.2% of living species, fine-scale distribution models covering 90% of species, and nodulation data covering all species to investigate the distribution of species richness and phylogenetic diversity at fine spatial scales compared to the distribution of RNS. We identify abiotic environmental factors associated with RNS and with Fagales diversity in general.

Results

We find the highest species richness in temperate east Asia, eastern North America, and equatorial montane regions of Asia and Central America. By contrast, relative phylogenetic diversity (RPD) is highest at higher latitudes, where RNS also predominates. We found a strong spatial structuring of regionalisations of Fagales floras, reflecting distinct Northern and Southern Hemisphere floras (except a unique Afro-Boreal region), each with distinct RNS-environment relationships.

Main Conclusions

Although species richness and phylogenetic regionalisation for Fagales accord well with traditional biogeographic concepts for temperate forests, this is not the case for RPD. RNS is almost universal in the highest RPD regions, which may reflect ecological filtering promoting RNS in these regions. Our results highlight the utility of global-scale, clade-specific spatial phylogenetics and its utility for understanding drivers of diversity in species-rich clades.

目的量化温带树木的系统发育多样性对于了解形成温带阔叶林和其他主要森林生物群落现代分布的过程至关重要。在此,我们以全球森林的标志性成员椑木为重点,揭示全球多样性和特有性模式,并研究根瘤共生(RNS)的分布,这是该支系的一个重要形态特化,也是这些模式背后的一个关键因素。方法我们结合了涵盖 60.2% 现存物种的系统发育数据、涵盖 90% 物种的精细分布模型以及涵盖所有物种的结核数据,研究了与 RNS 分布相比,物种丰富度和系统发育多样性在精细空间尺度上的分布情况。结果我们发现温带东亚、北美东部以及亚洲和中美洲的赤道山地地区的物种丰富度最高。相比之下,相对系统发育多样性(RPD)在高纬度地区最高,RNS在这些地区也占主导地位。我们发现椑木植物区系的空间结构具有很强的区域性,反映了不同的北半球和南半球植物区系(除了一个独特的非洲-北方地区),每个区域都具有不同的 RNS-环境关系。RNS几乎普遍存在于RPD最高的地区,这可能反映了这些地区促进RNS的生态过滤作用。我们的研究结果突显了全球尺度、特定支系的空间系统发生学的实用性,以及它在了解物种丰富的支系的多样性驱动因素方面的实用性。
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引用次数: 0
Fire–climate–human dynamics over the last 1800 years in the mesic Araucaria-Nothofagus forests 过去 1800 年间中生阿劳卡里亚-诺托法格森林的火灾-气候-人类动态变化
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-04-08 DOI: 10.1111/jbi.14839
Alejandra Martel-Cea, Ana M. Abarzúa, Mauro E. González, Leonora Jarpa, Marjorie Hernández
<div> <section> <h3> Aim</h3> <p>Few palaeoenvironmental studies have been performed in <i>Araucaria-Nothofagus</i> forests, which are highly vulnerable to ongoing threats from climate change and anthropogenic activities. The primary goal of this work is to reconstruct past environmental changes related to fire disturbances over the last 1800 years in Tolhuaca National Park (TNP), Chile.</p> </section> <section> <h3> Location</h3> <p>TNP, Araucanian region (38.2°S; 71.8°W), Northwestern Patagonia, Chile.</p> </section> <section> <h3> Taxa</h3> <p><i>Araucaria araucana</i> (Araucariaceae), <i>Nothofagus</i> spp. (Nothofagaceae).</p> </section> <section> <h3> Methods</h3> <p>We completed charcoal and pollen analyses to create two new palaeoecological records that span 1800 years. We compared the lake-based reconstruction with the available local tree-ring fire scar chronologies from the last 430 years. Using these data, we compute forest index changes, biomass burning trends and compare with estimates of archaeological radiocarbon density. We place our inferences with context of published regional palaeoclimatic proxies from the Patagonian-Andean region.</p> </section> <section> <h3> Results</h3> <p>Our results showed that fire activity was higher than present between 200 and 1500 CE, with peaks around 200–400 CE and 1100–1500 CE. Periods with high fire activity are associated with reduced forest cover, as <i>Araucaria</i> declined when mixed-severity fire regime occurred for extended periods. Pollen assemblages suggested a shift from dry to wet climate conditions at 1500 CE, and from 1750 CE onward, the arrival of exotic species reflected the land-use changes related to forest clearance and transhumance practices.</p> </section> <section> <h3> Main Conclusions</h3> <p>The palaeoenvironmental reconstructions showed changes in vegetation, fire and climate over the past 1800 years in TNP. Wildfires have been the main disturbance process modifying the vegetation structure in the <i>Araucaria</i> and <i>Nothofagus</i> forests. Since 1750 CE intensive post-Hispanic land-use changes (forest clearances by fire and logging) took place in the study area, reducing the native vegetation cover. Climate variability, modulated by SAM-like and ENSO-like conditions, influenced the fire activity (availability and flammability of fuels), concomitantly with high archaeological density. The recent (after 2000 CE) increase of catastrophic wildfires may negatively affect the conservation strateg
目的对阿劳卡-诺托法格森林进行的古环境研究很少,这些森林极易受到气候变化和人为活动的持续威胁。这项工作的主要目标是重建智利托尔华卡国家公园(Tolhuaca National Park,TNP)过去 1800 年来与火灾干扰相关的环境变化。方法我们完成了木炭和花粉分析,以创建两个新的古生态记录,时间跨度为 1800 年。我们将基于湖泊的重建与过去 430 年当地树环火痕年表进行了比较。利用这些数据,我们计算了森林指数变化、生物量燃烧趋势,并与考古放射性碳密度的估计值进行了比较。结果我们的研究结果表明,在公元前 200 年至 1500 年期间,火灾活动比现在更频繁,在公元前 200 年至 400 年和公元前 1100 年至 1500 年期间达到高峰。火灾活动频繁的时期与森林覆盖率下降有关,因为当混合严重程度的火灾长期存在时,Araucaria 的覆盖率会下降。花粉组合表明,在公元前 1500 年,气候条件从干燥转为湿润,而从公元前 1750 年起,外来物种的到来反映了与森林清理和畜牧业相关的土地利用变化。野火是改变 Araucaria 和 Nothofagus 森林植被结构的主要干扰过程。自公元 1750 年以来,研究区域发生了西班牙后土地利用的密集变化(通过火灾和伐木清除森林),减少了原生植被覆盖。气候的多变性受类似于 SAM 和厄尔尼诺/南方涛动的条件的调节,影响了火灾活动(燃料的可用性和易燃性),同时也影响了考古密度。最近(公元 2000 年以后)灾难性野火的增加可能会对 Araucaria-Nothofagus 森林的保护战略产生负面影响。
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引用次数: 0
Impact of Quaternary Amazonian river dynamics on the diversification of uakari monkeys (genus Cacajao) 亚马逊河第四纪河流动力学对乌卡里猴(Cacajao 属)多样化的影响
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-04-08 DOI: 10.1111/jbi.14844
Felipe Ennes Silva, Leilton Willians Luna, Romina Batista, Fabio Röhe, Chrysoula Gubili, Izeni P. Farias, Tomas Hrbek, João Valsecchi, Camila C. Ribas, Allan D. McDevitt, Simon Dellicour, Jean-François Flot, Jean P. Boubli
<div> <section> <h3> Aim</h3> <p>The central and western Amazonia underwent several landscape changes during the Quaternary. Whereas the Riverine Barrier Hypothesis is traditionally used to explain the influence of rivers on speciation, processes such as river rearrangements have been overlooked to explain the geographic distribution and evolutionary history of Amazonia biota. Here, we tested how river rearrangements influenced the evolutionary history of uakari monkeys, genus <i>Cacajao</i>, a primate genus primarily associated with seasonally flooded forests in central and western Amazonia.</p> </section> <section> <h3> Location</h3> <p>Central and Western Amazonia.</p> </section> <section> <h3> Taxon</h3> <p>The genus <i>Cacajao</i>, including the black uakaris (<i>C. melanocephalus</i>, <i>C. ayresi</i>, <i>C. hosomi</i>); and the bald-headed uakaris (<i>C. calvus</i>, <i>C. amuna</i>, <i>C. rubicundus</i>, <i>C. ucayalii</i>, <i>C. novaesi</i>).</p> </section> <section> <h3> Methods</h3> <p>We performed a continuous phylogeographic analysis using 77 cytochrome <i>b</i> sequences to identify the origin and dispersal of <i>Cacajao</i> lineages. We used genome-wide SNP variation (ddRADseq) to investigate population structure, gene flow and demographic history in <i>Cacajao</i> populations and used digital elevation models to identify landscape and riverscape characteristics that may have influenced the geographic distribution of <i>Cacajao</i>.</p> </section> <section> <h3> Results</h3> <p>Our continuous phylogeographic reconstruction pointed out that the ancestral <i>Cacajao</i> lineage occupied the flooded forests of the Solimões River, in central Amazonia, at ~1.7 Mya and descendant lineages dispersed throughout central and western Amazonia more recently. We identified gene flow in both black and bald-headed uakari populations, even across rivers considered barriers (e.g. the Negro River). Landscape analysis showed that river rearrangements influenced the geographic distribution and population structure in <i>Cacajao</i>. Historical demographic analyses suggest varied scenarios of population size changes among <i>Cacajao</i> monkeys consistent with periods of intense dynamism in flooded habitats and the formation of non-flooded upland forests.</p> </section> <section> <h3> Main Conclusion</h3> <p>Our results support that the river rearrangements have shaped the geographic distribution and divergence of recently diverged <i>Cacajao</i> lineages. Landscape and riversca
目的亚马孙中西部在第四纪经历了多次地貌变化。河流屏障假说(Riverine Barrier Hypothesis)传统上被用来解释河流对物种演化的影响,但在解释亚马孙生物群的地理分布和演化历史时,河流重排等过程却被忽视了。在这里,我们检验了河流重排如何影响了uakari猴(Cacajao属)的进化史,uakari猴是一种主要与亚马孙中西部季节性洪水森林相关的灵长类动物。melanocephalus、C. ayresi、C. hosomi);以及秃头uakaris(C. calvus、C. amuna、C. rubicundus、C. ucayalii、C. novaesi)。方法我们利用 77 个细胞色素 b 序列进行了连续的系统地理学分析,以确定 Cacajao 系的起源和扩散。我们利用全基因组SNP变异(ddRADseq)研究了Cacajao种群的种群结构、基因流和人口历史,并利用数字高程模型确定了可能影响Cacajao地理分布的地貌和河流景观特征。结果我们的连续系统地理学重建指出,Cacajao祖系在约170万年前占据了亚马孙中部索利蒙斯河的淹没森林,其后系则在最近散布于亚马孙中部和西部。我们在黑头uakari和秃头uakari种群中发现了基因流动,甚至跨越了被认为是障碍的河流(如内格罗河)。景观分析表明,河流的重新排列影响了卡卡约的地理分布和种群结构。历史人口分析表明,卡卡约猴的种群数量变化情况各不相同,与洪水淹没的栖息地和非洪水淹没的高地森林的形成时期相一致。地貌和河流景观的变化,以及洪水淹没森林的退缩,将一些 Cacajao 种群隔离在洪泛区。我们的研究还表明,这些事件导致了地理分布受限的物种近期人口历史的变化。
{"title":"Impact of Quaternary Amazonian river dynamics on the diversification of uakari monkeys (genus Cacajao)","authors":"Felipe Ennes Silva,&nbsp;Leilton Willians Luna,&nbsp;Romina Batista,&nbsp;Fabio Röhe,&nbsp;Chrysoula Gubili,&nbsp;Izeni P. Farias,&nbsp;Tomas Hrbek,&nbsp;João Valsecchi,&nbsp;Camila C. Ribas,&nbsp;Allan D. McDevitt,&nbsp;Simon Dellicour,&nbsp;Jean-François Flot,&nbsp;Jean P. Boubli","doi":"10.1111/jbi.14844","DOIUrl":"10.1111/jbi.14844","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The central and western Amazonia underwent several landscape changes during the Quaternary. Whereas the Riverine Barrier Hypothesis is traditionally used to explain the influence of rivers on speciation, processes such as river rearrangements have been overlooked to explain the geographic distribution and evolutionary history of Amazonia biota. Here, we tested how river rearrangements influenced the evolutionary history of uakari monkeys, genus &lt;i&gt;Cacajao&lt;/i&gt;, a primate genus primarily associated with seasonally flooded forests in central and western Amazonia.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Central and Western Amazonia.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Taxon&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The genus &lt;i&gt;Cacajao&lt;/i&gt;, including the black uakaris (&lt;i&gt;C. melanocephalus&lt;/i&gt;, &lt;i&gt;C. ayresi&lt;/i&gt;, &lt;i&gt;C. hosomi&lt;/i&gt;); and the bald-headed uakaris (&lt;i&gt;C. calvus&lt;/i&gt;, &lt;i&gt;C. amuna&lt;/i&gt;, &lt;i&gt;C. rubicundus&lt;/i&gt;, &lt;i&gt;C. ucayalii&lt;/i&gt;, &lt;i&gt;C. novaesi&lt;/i&gt;).&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We performed a continuous phylogeographic analysis using 77 cytochrome &lt;i&gt;b&lt;/i&gt; sequences to identify the origin and dispersal of &lt;i&gt;Cacajao&lt;/i&gt; lineages. We used genome-wide SNP variation (ddRADseq) to investigate population structure, gene flow and demographic history in &lt;i&gt;Cacajao&lt;/i&gt; populations and used digital elevation models to identify landscape and riverscape characteristics that may have influenced the geographic distribution of &lt;i&gt;Cacajao&lt;/i&gt;.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Our continuous phylogeographic reconstruction pointed out that the ancestral &lt;i&gt;Cacajao&lt;/i&gt; lineage occupied the flooded forests of the Solimões River, in central Amazonia, at ~1.7 Mya and descendant lineages dispersed throughout central and western Amazonia more recently. We identified gene flow in both black and bald-headed uakari populations, even across rivers considered barriers (e.g. the Negro River). Landscape analysis showed that river rearrangements influenced the geographic distribution and population structure in &lt;i&gt;Cacajao&lt;/i&gt;. Historical demographic analyses suggest varied scenarios of population size changes among &lt;i&gt;Cacajao&lt;/i&gt; monkeys consistent with periods of intense dynamism in flooded habitats and the formation of non-flooded upland forests.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusion&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Our results support that the river rearrangements have shaped the geographic distribution and divergence of recently diverged &lt;i&gt;Cacajao&lt;/i&gt; lineages. Landscape and riversca","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"51 8","pages":"1505-1517"},"PeriodicalIF":3.4,"publicationDate":"2024-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140599753","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Beta diversity and regionalization of the western Atlantic marine biota 西大西洋海洋生物区系的贝塔多样性和区域化
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-04-04 DOI: 10.1111/jbi.14837
Ubirajara Oliveira, Fernanda Azevedo, Alan Dias, Ana Carolina Sousa de Almeida, André R. Senna, Antonio C. Marques, Dafinny Rezende, Eduardo Hajdu, Erick Alves Pereira Lopes-Filho, Fábio Bettini Pitombo, Gabriela Moura de Oliveira, João Gabriel Doria, João Luís Carraro, Joel Campos De-Paula, Juliana Bahia, Juliana Magalhães de Araujo, Karla Paresque, Leandro Manzoni Vieira, Luanny Martins Fernandes, Micaele Niobe Martins Cardoso, Luciano N. Santos, Lucília Souza Miranda, Michelle Klautau, Paulo Roberto Pagliosa, Pedro Henrique Braga Clerier, Rafael B. de Moura, Rafael da Rocha Fortes, Raquel A. F. Neves, Rosana Moreira da Rocha, Sérgio N. Stampar, Sula Salani, Thaís Pires Miranda, Ulisses Pinheiro, Virág Venekey
<div> <section> <h3> Aim</h3> <p>Understanding the factors determining marine community variations is important for biogeography and conservation. Beta diversity is a metric for mapping species composition variations between communities and regionalizing biota. Ecoregions are commonly used for regionalization, but their empirical testing has been limited. Our aim is to map marine species composition variations in the Western Atlantic, identify variables related to these variations, and regionalize areas based on community distribution. Additionally, we test whether currently proposed ecoregions represent unique biota units and specific environmental conditions.</p> </section> <section> <h3> Location</h3> <p>Western Atlantic Ocean.</p> </section> <section> <h3> Taxon</h3> <p>Vertebrates, invertebrates and algae.</p> </section> <section> <h3> Methods</h3> <p>We constructed a large marine biodiversity database, including vertebrates, invertebrates, and algae, totalling over 4 million records. We used the generalized dissimilarity model (GDM) to identify variables most related to species composition variations and map beta-diversity variations. We employed an unsupervised classifier for community regionalization. To test if the ecoregion regionalization boundaries are corroborated by species distribution data, we used the Sørensen index. To assess if ecoregions correspond to environmental units, we checked if areas had distinct environmental conditions using a PCA of 134 marine environmental variables.</p> </section> <section> <h3> Results</h3> <p>The GDM explained a high variation in species composition, 61% in the complete database. Analysing vertebrates, invertebrates and algae separately also yielded relatively high results: 46%, 54%, and 33%, respectively. Coastal areas differed from open sea areas in composition. Environmental variables combined better explained beta diversity than isolated variables. The regionalization based on GDM was not congruent with ecoregion boundaries. Moreover, ecoregions showed no distinction in species composition or environmental conditions.</p> </section> <section> <h3> Main Conclusions</h3> <p>This study's regionalization is crucial for marine biodiversity conservation, focusing on understanding species composition patterns between coastal and open sea areas to develop tailored conservation strategies. Despite sampling limitations, the study advances marine biogeography knowledge by analysing over 4 million species records and 134 environ
目的 了解决定海洋群落变化的因素对于生物地理学和生物保护非常重要。Beta 多样性是绘制群落间物种组成变化图和生物群落区域化的一个指标。生态区域通常用于区域化,但其实证检验有限。我们的目的是绘制西大西洋海洋物种组成变化图,确定与这些变化相关的变量,并根据群落分布划分区域。我们构建了一个大型海洋生物多样性数据库,包括脊椎动物、无脊椎动物和藻类,总计超过 400 万条记录。我们使用广义相似性模型(GDM)来识别与物种组成变化最相关的变量,并绘制贝塔多样性变化图。我们采用无监督分类器进行群落区域化。为了检验生态区区域化边界是否得到物种分布数据的证实,我们使用了索伦森指数。为了评估生态区是否与环境单位相对应,我们使用了 134 个海洋环境变量的 PCA 来检测区域是否具有不同的环境条件。对脊椎动物、无脊椎动物和藻类分别进行分析,结果也相对较高:分别为 46%、54% 和 33%。沿海地区与开阔海域在组成上有所不同。综合环境变量比单独变量更能解释贝塔多样性。基于 GDM 的区域划分与生态区域边界并不一致。此外,生态区域在物种组成和环境条件方面并无区别。尽管存在取样限制,但这项研究通过分析 400 多万条物种记录和 134 个环境变量,推进了海洋生物地理学知识的发展。这种综合方法有助于了解海洋物种的分布和多样性,有助于制定有效的保护措施。
{"title":"Beta diversity and regionalization of the western Atlantic marine biota","authors":"Ubirajara Oliveira,&nbsp;Fernanda Azevedo,&nbsp;Alan Dias,&nbsp;Ana Carolina Sousa de Almeida,&nbsp;André R. Senna,&nbsp;Antonio C. Marques,&nbsp;Dafinny Rezende,&nbsp;Eduardo Hajdu,&nbsp;Erick Alves Pereira Lopes-Filho,&nbsp;Fábio Bettini Pitombo,&nbsp;Gabriela Moura de Oliveira,&nbsp;João Gabriel Doria,&nbsp;João Luís Carraro,&nbsp;Joel Campos De-Paula,&nbsp;Juliana Bahia,&nbsp;Juliana Magalhães de Araujo,&nbsp;Karla Paresque,&nbsp;Leandro Manzoni Vieira,&nbsp;Luanny Martins Fernandes,&nbsp;Micaele Niobe Martins Cardoso,&nbsp;Luciano N. Santos,&nbsp;Lucília Souza Miranda,&nbsp;Michelle Klautau,&nbsp;Paulo Roberto Pagliosa,&nbsp;Pedro Henrique Braga Clerier,&nbsp;Rafael B. de Moura,&nbsp;Rafael da Rocha Fortes,&nbsp;Raquel A. F. Neves,&nbsp;Rosana Moreira da Rocha,&nbsp;Sérgio N. Stampar,&nbsp;Sula Salani,&nbsp;Thaís Pires Miranda,&nbsp;Ulisses Pinheiro,&nbsp;Virág Venekey","doi":"10.1111/jbi.14837","DOIUrl":"10.1111/jbi.14837","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Understanding the factors determining marine community variations is important for biogeography and conservation. Beta diversity is a metric for mapping species composition variations between communities and regionalizing biota. Ecoregions are commonly used for regionalization, but their empirical testing has been limited. Our aim is to map marine species composition variations in the Western Atlantic, identify variables related to these variations, and regionalize areas based on community distribution. Additionally, we test whether currently proposed ecoregions represent unique biota units and specific environmental conditions.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Western Atlantic Ocean.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Taxon&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Vertebrates, invertebrates and algae.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We constructed a large marine biodiversity database, including vertebrates, invertebrates, and algae, totalling over 4 million records. We used the generalized dissimilarity model (GDM) to identify variables most related to species composition variations and map beta-diversity variations. We employed an unsupervised classifier for community regionalization. To test if the ecoregion regionalization boundaries are corroborated by species distribution data, we used the Sørensen index. To assess if ecoregions correspond to environmental units, we checked if areas had distinct environmental conditions using a PCA of 134 marine environmental variables.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The GDM explained a high variation in species composition, 61% in the complete database. Analysing vertebrates, invertebrates and algae separately also yielded relatively high results: 46%, 54%, and 33%, respectively. Coastal areas differed from open sea areas in composition. Environmental variables combined better explained beta diversity than isolated variables. The regionalization based on GDM was not congruent with ecoregion boundaries. Moreover, ecoregions showed no distinction in species composition or environmental conditions.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusions&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;This study's regionalization is crucial for marine biodiversity conservation, focusing on understanding species composition patterns between coastal and open sea areas to develop tailored conservation strategies. Despite sampling limitations, the study advances marine biogeography knowledge by analysing over 4 million species records and 134 environ","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"51 8","pages":"1469-1480"},"PeriodicalIF":3.4,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140599749","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Do aposematic species have larger range sizes? A case study with neotropical poison frogs 有表情物种的分布范围更大吗?新热带毒蛙案例研究
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-04-04 DOI: 10.1111/jbi.14843
Priscila Silveira, Fernanda Gonçalves de Sousa, Philipp Böning, Natan M. Maciel, Juliana Stropp, Stefan Lötters

Aim

Aposematic animals, i.e., those that are defended and warn potential predators through signals, are suggested to have resource-gathering advantages against non-aposematic ones. We here explore this in a biogeographic framework expecting that aposematic species are better dispersers, which translates into larger geographic range size.

Location

South America.

Taxon

Poison frogs (Amphibia; Aromobatidae and Dendrobatidae).

Methods

We use 43 toxic and 26 non-toxic poison frog species from the lowlands only as representatives of aposematic and non-aposematic study organisms, respectively. Realised and potential geographic ranges are calculated using minimum convex polygon and species distribution modelling methods, respectively. Accounting for species body size and phylogeny, we test if both range and aposematism are correlated using linear mixed-effects models.

Results

Aposematic and non-aposematic species neither differ in realised nor in potential geographic range size. There was no effect on body size.

Main Conclusions

The role of aposematism is not yet as clear as suggested and determinants of poison frog range sizes are multifaceted. A more integrative approach is needed using the information on behaviour, predation risk, and reproductive biology to assess the role of aposematism on observed species distributions. Such data are not yet available for most species, neither poison frogs nor other aposematic animals.

目的有行为能力的动物,即那些通过信号来防御和警告潜在捕食者的动物,被认为比无行为能力的动物具有资源采集优势。我们在此从生物地理学的角度对这一观点进行了探讨,预计有表征的物种具有更好的扩散性,这将转化为更大的地理分布范围。方法我们仅使用低地的 43 种有毒和 26 种无毒毒蛙作为有表征和无表征研究生物的代表。分别采用最小凸多边形法和物种分布模型法计算实际和潜在的地理分布范围。考虑到物种的体型和系统发育,我们使用线性混合效应模型检验了分布范围与有表型性是否相关。主要结论 "无表情 "的作用并不像人们认为的那样明显,决定毒蛙分布区大小的因素是多方面的。需要利用行为学、捕食风险和繁殖生物学等方面的信息,采用一种更加综合的方法来评估有丝分裂对观察到的物种分布的作用。对于大多数物种,无论是毒蛙还是其他有凋亡现象的动物,都还没有此类数据。
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引用次数: 0
Rolling with the punches—How competition shapes the morphology of small passerines on small islands 随冲随滚--竞争如何塑造小岛屿上小型鸟类的形态
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-04-04 DOI: 10.1111/jbi.14838
David J. Kelly, Darren P. O'Connell, Fionn Ó Marcaigh, Seán B. A. Kelly, Adi Karya, Kangkuso Analuddin, Nicola Marples
<div> <section> <h3> Aim</h3> <p>Wallacea is a global biodiversity hotspot and Sulawesi is the largest island in this region, notable for a high proportion of endemic species. The Wakatobi archipelago, off the southeastern peninsular arm of Sulawesi, is home to several endemic bird species. Although islands are known to influence the morphology of their resident species, competitive interactions also exert strong influences on morphology. Here, we consider the contributions of both islands and competitors on two morphological traits of two bird species in a small passerine guild found on the Wakatobi islands.</p> </section> <section> <h3> Location</h3> <p>Wakatobi archipelago, Sulawesi Tenggara, Indonesia.</p> </section> <section> <h3> Taxon</h3> <p>Wakatobi White-eye (<i>Zosterops flavissimus</i>) and Wakatobi Sunbird (<i>Cinnyris infrenatus</i>).</p> </section> <section> <h3> Methods</h3> <p>Working with morphological measures (from netting studies), population density metrics (from transect surveys) and fundamental data from islands (area, distance from mainland and elevation), we investigated (by means of multiple linear regression) which terms best explained variation in the body size and bill size of two small passerine birds endemic to the Wakatobi islands.</p> </section> <section> <h3> Results</h3> <p>Both island metrics and competitor presence/density were useful in describing the variation in body size of both bird species. However, only competitor presence/density was useful in describing variation in bill size of the birds. The best models describing variation in these traits included terms representing both interspecific and intraspecific competition.</p> </section> <section> <h3> Main Conclusions</h3> <p>Our findings indicate that simple island metrics may be useful in predicting some of the variation in some functional traits of island species. However, in this example, simple island metrics were insufficient to explain the full variation in body size of endemic birds across the Wakatobi archipelago and were of no use in predicting the variation in their bill size. As bill morphology frequently dictates diet and feeding niche, it is a trait which may determine population divergence and speciation. If simple island metrics fail to describe such diversification, it is surely important to capture that information in other ways.</p>
目标瓦拉几亚是全球生物多样性热点地区,苏拉威西岛是该地区最大的岛屿,拥有大量特有物种。苏拉威西岛东南半岛外的瓦卡托比群岛是多种特有鸟类的家园。尽管众所周知岛屿会影响其常驻物种的形态,但竞争性相互作用也会对形态产生强烈影响。地点印度尼西亚苏拉威西腾格里省瓦卡托比群岛。分类群瓦卡托比白眼鸟(Zosterops flavissimus)和瓦卡托比太阳鸟(Cinnyris infrenatus)。方法通过形态测量(来自网捕研究)、种群密度指标(来自横断面调查)和岛屿基本数据(面积、与大陆的距离和海拔),我们研究了(通过多元线性回归)哪些指标最能解释瓦卡托比群岛特有的两种小型通鸟的体型和喙大小的变化。 结果岛屿指标和竞争者的存在/密度都有助于描述这两种鸟的体型变化。然而,只有竞争者的存在/密度有助于描述鸟类喙大小的变化。主要结论我们的研究结果表明,简单的岛屿指标可能有助于预测岛屿物种某些功能特征的变化。然而,在这个例子中,简单的岛屿指标不足以解释瓦卡托比群岛特有鸟类体型的全部变化,也无法预测其喙的大小变化。由于喙的形态往往决定了食物和觅食环境,因此它可能是决定种群分化和物种灭绝的一个特征。如果简单的岛屿衡量标准无法描述这种多样化,那么以其他方式捕捉这些信息无疑是非常重要的。
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引用次数: 0
Multiple aspects of tree beta diversity in coastal ecosystems in Brazil 巴西沿海生态系统树木贝塔多样性的多个方面
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-04-02 DOI: 10.1111/jbi.14842
Eduardo Vinícius da Silva Oliveira, Myrna Friederichs Landim, Sidney F. Gouveia

Aim

Patterns of beta diversity reflect the formation dynamics of ecological communities. Here, we integrated geographic, phylogenetic, and phenotypic information of coastal woody vegetation to investigate (1) whether the observed dissimilarity between assemblages differs from that expected by chance, examining the roles of spatial and deterministic processes; (2) the relative contribution of beta-diversity components (turnover and nestedness) for taxonomic, phylogenetic, and functional beta diversity; and (3) what environmental factors drive the differences in composition between assemblages for all these dimensions.

Location

Brazil.

Taxon

Angiosperm trees.

Methods

We built dissimilarity matrices and partitioned the taxonomic, phylogenetic, and functional beta diversity from an incidence matrix, a phylogeny including the region's plants, and a matrix expressing functional distances. Using linear regressions, we tested the effects of different environmental predictors representative of the effects of water availability, thermal energy, habitat heterogeneity, edaphic constraints, climatic stability, and human influence on beta-diversity patterns.

Results

Taxonomic, phylogenetic, and functional dissimilarities exhibited a typical pattern of greater dissimilarity with distance (i.e., as expected by chance). However, these patterns showed different contributions of beta-diversity components, predominating turnover in taxonomic and phylogenetic dissimilarity, and nestedness in functional dissimilarity. Water availability had a slight effect on patterns of taxonomic and phylogenetic dissimilarities.

Main conclusions

The Brazilian coastal woody vegetation appears to have emerged through a dynamic of colonisation of evolutionarily distinct but functionally similar lineages that originated from adjacent phytogeographic domains, proportional to their diversity. This is consistent with a combination of both neutral and non-neutral processes. Our findings underscore the complementary roles of different dimensions of beta diversity in explaining the dynamics of these vegetation communities.

目的β多样性模式反映了生态群落的形成动态。在此,我们整合了沿海木本植被的地理、系统发育和表型信息,以研究:(1)观察到的群落间差异是否不同于偶然性的预期,考察空间过程和决定性过程的作用;(2)β多样性成分(更替和嵌套性)对分类、系统发育和功能β多样性的相对贡献;以及(3)在所有这些维度上,哪些环境因素驱动了群落间组成的差异。地点巴西.分类群.ngiosperm trees.方法我们建立了异质性矩阵,并从发生率矩阵、包括该地区植物在内的系统发生和表示功能距离的矩阵中划分出分类、系统发生和功能贝塔多样性。通过线性回归,我们测试了不同环境预测因子对贝塔多样性模式的影响,这些环境预测因子代表了水供应、热能、栖息地异质性、土壤限制、气候稳定性和人类对贝塔多样性模式的影响。然而,这些模式显示出不同的贝塔多样性成分的贡献,在分类学和系统发育异质性中,周转性占主导地位,而在功能异质性中,嵌套性占主导地位。主要结论巴西沿海木本植被似乎是通过进化上独特但功能上相似的植被群落的定植动态出现的,这些植被群落起源于相邻的植物地理区域,与它们的多样性成正比。这与中性和非中性过程的结合是一致的。我们的发现强调了贝塔多样性的不同维度在解释这些植被群落动态方面的互补作用。
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引用次数: 0
The role of dispersal limitation in the forest biome shifts of Europe in the last 18,000 years 散布限制在过去 1.8 万年欧洲森林生物群落变迁中的作用
IF 3.4 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-03-26 DOI: 10.1111/jbi.14836
Deborah Zani, Heike Lischke, Veiko Lehsten

Aim

How the ability of plants to move towards newly favourable habitats (dispersal limitation) impacts the change of biome distribution and transition under fast climate warming is still debated. Analysing vegetation change in the past may help to clarify the relative importance of underlying ecological processes such as climate, biotic interactions, and dispersal. In this study, we investigated how dispersal limitation affected the distribution of European forests in the last 18,000 years.

Location

Southern and Central Europe.

Taxon

Spermatophyta.

Methods

Using the LPJ-GM 2.0 model (an extension of LPJ-GUESS), we simulated European vegetation from the end of the Last Glacial Maximum (18.5 ka) to the current time (0 ka). Using biome reconstructions from pollen data as reference, we compared the performance of two dispersal modes: with no migration constraints or seed limitation (free dispersal mode), and with plant establishment depending on seed dynamics and dispersal (dispersal limitation mode).

Results

The model run, including migration processes, was better at capturing the post-glacial expansion of European temperate forests (and the longer persistence of boreal forests) than the setting assuming free dispersal, especially during periods of rapid warming. This suggests that a number of (temperate) tree taxa experienced delayed occupancy of climatically suitable habitats due to a limited dispersal capacity, i.e., post-glacial migration lags.

Main Conclusions

Our results show that including migration processes in model simulations allows for more realistic reconstructions of forest patterns under rapid climate change, with consequences for future projections of carbon sequestration and climate reconstructions with vegetation feedback, assisted migration and forest conservation.

目的在气候迅速变暖的情况下,植物向新的有利生境迁移的能力(扩散限制)如何影响生物群落分布和过渡的变化,目前仍存在争议。分析过去的植被变化可能有助于阐明气候、生物相互作用和扩散等基本生态过程的相对重要性。方法利用 LPJ-GM 2.0 模型(LPJ-GUESS 的扩展),我们模拟了从末次冰川极盛时期末期(18.5 ka)到当前时期(0 ka)的欧洲植被。以花粉数据重建的生物群落为参考,我们比较了两种散播模式的性能:无迁移限制或种子限制(自由散播模式),以及植物建立取决于种子动态和散播(散播限制模式)。结果与假定自由散播的模式相比,包含迁移过程的模式运行在捕捉冰川期后欧洲温带森林的扩张(以及北方森林的长期存在)方面表现更好,尤其是在快速变暖时期。主要结论我们的研究结果表明,在模型模拟中加入迁徙过程可以更真实地重建快速气候变化下的森林模式,从而对未来的碳封存预测、植被反馈气候重建、辅助迁徙和森林保护产生影响。
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引用次数: 0
Cover 封面
IF 3.9 2区 环境科学与生态学 Q2 ECOLOGY Pub Date : 2024-03-18 DOI: 10.1111/jbi.14644

On the cover: Pocillopora aff. meandrina is a species of hard coral acting as one of the main reef builders in the southwestern Indian Ocean. Photo credit: Lionel Bigot.

封面Pocillopora aff. meandrina 是一种硬珊瑚,是印度洋西南部的主要珊瑚礁建造者之一。图片来源:Lionel Bigot。
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引用次数: 0
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Journal of Biogeography
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