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Hazard Characterization of Antibiotic-resistant Aeromonas spp. Isolated from Mussel and Oyster Shellstock Available for Retail Purchase in Canada 从加拿大零售的贻贝和牡蛎贝壳中分离出的抗生素耐药气单胞菌的危害特征。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-09 DOI: 10.1016/j.jfp.2024.100374
Mary Rao , Januana S. Teixeira , Annika Flint, Sandeep Tamber
Surveillance and monitoring of foods for the presence of antimicrobial-resistant (AMR) bacteria are required to assess the risks these bacteria pose to human health. Frequently consumed raw or lightly cooked, live bivalve shellfish such as mussels and oysters can be a source of exposure to AMR bacteria. This study sought to determine the prevalence of third-generation cephalosporin (3GC) and carbapenem-resistant bacteria in live mussel and oyster shellstock available for retail purchase through the course of one calendar year. Just over half of the 180 samples (52%) tested positive for the presence of 3GC-resistant bacteria belonging to thirty distinct bacterial species. Speciation of the isolates was carried out using the Bruker MALDI Biotyper. Serratia spp., Aeromonas spp., and Rahnella spp. were the most frequently isolated groups of bacteria. Antibiotic resistance testing confirmed reduced susceptibility for 3GCs and/or carbapenems in 15 of the 29 Aeromonas isolates. Based on AMR patterns, and species identity, a subset of ten Aeromonas strains was chosen for further characterization by whole genome sequence analysis. Genomic analysis revealed the presence of multiple antibiotic resistance and virulence genes. A number of mobile genetic elements were also identified indicating the potential for horizontal gene transfer. Differences in gene detection by the bioinformatic tools and databases used (ResFinder. CARD RGI, PlasmidFinder, and MobSuite) are discussed. This study highlights the strengths and limitations of using genomics tools to perform hazard characterization of diverse foodborne bacterial species.
要评估这些细菌对人类健康造成的风险,就必须对食品中是否存在抗微生物(AMR)细菌进行监测和监控。贻贝和牡蛎等经常生吃或轻度烹饪的活双壳贝类可能是AMR细菌的暴露源。这项研究旨在确定在一个日历年中供零售的活贻贝和牡蛎贝类中第三代头孢菌素(3GC)和碳青霉烯类耐药细菌的流行情况。在 180 个样本中,有一半多一点(52%)的样本检测结果呈阳性,显示存在对第三代头孢菌素(3GC)耐药的细菌,这些细菌属于 30 个不同的细菌种类。使用布鲁克 MALDI 生物分析仪对分离菌种进行了分类。沙雷氏菌属、气单胞菌属和拉恩氏菌属是最常分离到的细菌群。抗生素耐药性测试证实,29 个分离出的气单胞菌中有 15 个对 3GCs 和/或碳青霉烯类药物的敏感性降低。根据 AMR 模式和物种特征,选择了 10 株气单胞菌进行全基因组序列分析,以进一步确定其特征。基因组分析显示存在多种抗生素耐药性基因和毒力基因。此外,还发现了一些移动遗传因子,表明可能存在水平基因转移。本研究讨论了所使用的生物信息学工具和数据库(ResFinder、CARD RGI、PlasmidFinder 和 MobSuite)在基因检测方面的差异。本研究强调了使用基因组学工具对各种食源性细菌物种进行危害鉴定的优势和局限性。
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引用次数: 0
Evaluation of a Postbiotic on Salmonella enterica Prevalence, Serotype Diversity, and Antimicrobial Resistance in the Subiliac Lymph Nodes of Cull Dairy Cattle 评估后益生菌对宰杀奶牛髂下淋巴结中肠炎沙门氏菌流行率、血清型多样性和抗菌药耐药性的影响。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-09 DOI: 10.1016/j.jfp.2024.100375
Stephen E. Edache , Vanessa Horton , Diana M. Dewsbury , Leigh Ann George , Xiaorong Shi , T.G. Nagaraja , Sherri Trujillo , Ryan Algino , Tom S. Edrington , David G. Renter , Natalia Cernicchiaro
This study aimed to determine whether the farm-level use of a Saccharomyces cerevisiae-based postbiotic was associated with Salmonella prevalence and concentration, serotype diversity, and antimicrobial resistance in the subiliac lymph nodes (LN) of cull dairy cows. In collaboration with two commercial processing plants in the Southwestern (SW) and Northeastern (NE) regions of the U.S., cull dairy cattle lots processed in the same week from dairy farms that fed or not the postbiotic were sampled. Up to 20 LN were collected from dairy cattle from each supplier farm at least once every season. Samples were analyzed for Salmonella by culture and quantitative PCR methods, and isolates were subjected to serotype identification and antimicrobial susceptibility testing. Although a numerically lower prevalence was observed, the preharvest administration of the postbiotic was not significantly associated with Salmonella prevalence in cull dairy cattle. However, Salmonella prevalence significantly varied by region; the SW region showed a higher prevalence than the NE region. Whereas dominant Salmonella serotypes included Montevideo, Mbandaka, Muenster, Cerro, Meleagridis, and Anatum, the probability of isolating a dominant serotype did not significantly vary by feed additive status (FAS) or region, but varied by season. Up to 34 isolates (out of 391) exhibited resistance to each antimicrobial, with the highest number of isolates exhibiting resistance to streptomycin and ciprofloxacin; however, this did not significantly vary by FAS, season, or region. The precise reasons for the lack of effectiveness of the postbiotic in reducing Salmonella burden are unknown; however, varied administration durations of the postbiotic due to culling at different lactation cycle stages or during dry periods may have hindered its impact, especially if dairy cows were culled early. Other factors may include dietary components, farm management practices, and external environmental influences.
本研究旨在确定牧场使用基于酿酒酵母的益生菌是否与奶牛髂下淋巴结(LN)中沙门氏菌的流行率和浓度、血清型多样性以及抗菌药耐药性有关。我们与美国西南(SW)和东北(NE)地区的两家商业加工厂合作,对奶牛场在同一周内加工的奶牛批次进行了采样,这些批次的奶牛饲喂或未饲喂后生素。每个供应农场每季至少从奶牛身上采集一次,每次采集多达 20 头 LN。通过培养和定量 PCR 方法对样本进行沙门氏菌分析,并对分离物进行血清型鉴定和抗菌药敏感性测试。尽管从数量上观察到的沙门氏菌感染率较低,但收获前使用益生菌后与宰杀奶牛中的沙门氏菌感染率并无明显关联。不过,不同地区的沙门氏菌感染率存在显著差异;西南地区的感染率高于东北地区。虽然沙门氏菌的主要血清型包括蒙得维的亚、姆班达卡、明斯特、塞罗、梅莱格里迪斯和阿纳图,但分离出主要血清型的概率并不因饲料添加剂状态(FAS)或地区而显著不同,而是因季节而异。多达 34 个分离物(共 391 个)对每种抗菌素都表现出抗药性,其中对链霉素和环丙沙星表现出抗药性的分离物数量最多,但这并不因饲料添加剂状况、季节或地区的不同而有显著差异。然而,由于在不同的泌乳周期阶段或在干燥时期宰杀奶牛而导致的后效杀菌剂用药时间不同,可能会影响其效果,尤其是在奶牛被提前宰杀的情况下。其他因素可能包括日粮成分、牧场管理方法和外部环境的影响。
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引用次数: 0
Generic Food Safety Assessment: A Framework to Evaluate Food Safety Hazards Emerging from Change(s) in the Primary Production System – A Case Study Involving Intercropping 通用食品安全评估:评估初级生产系统变化引起的食品安全危害的框架--涉及间作套种的案例研究。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-05 DOI: 10.1016/j.jfp.2024.100371
Rosa A. Safitri , Esther D. van Asselt , Judith Müller-Maatsch , Susanne Vogelgsang , Tamara Dapcevic-Hadnadev , Monique de Nijs
Food safety is a shared responsibility of all actors along the food supply chain. Changes in the primary production system can affect food safety hazards along the supply chain. This highlights the need for a framework that enables primary producers (i.e., farmers) to assess the potential food safety hazards and, if needed, to apply control measures. This paper presents a generic food safety assessment (GFSA) framework that has been developed based on Hazard Analysis and Critical Control Point (HACCP). The proposed framework was applied to a case study, i.e., the transition from sole cropping of oats to intercropping of oats with lupins. The application of the GFSA framework enabled the evaluation of potential changes in food safety hazards from this transition and the establishment of appropriate control measures. In addition, GFSA users can employ the results to support decision-making process. Our case study showed that implementing GFSA can be challenging for smallholder or individual farmers and may need coordinated action. Finally, effective and transparent communication is critical for managing food safety along the food supply chain, including when changes are implemented in primary production.
食品安全是食品供应链上所有参与者的共同责任。初级生产系统的变化会影响供应链上的食品安全危害。因此,有必要建立一个框架,使初级生产者(即农民)能够评估潜在的食品安全危害,并在必要时采取控制措施。本文介绍了基于危害分析和关键控制点(HACCP)开发的通用食品安全评估(GFSA)框架。提出的框架被应用于一个案例研究,即从单一种植燕麦到燕麦与羽扇豆间作的过渡。通过应用 GFSA 框架,可以对这一转变可能带来的食品安全危害变化进行评估,并制定适当的控制措施。此外,GFSA 用户还可以利用其结果来支持决策过程。我们的案例研究表明,对于小农或个体农民来说,实施全球食品安全标准可能具有挑战性,可能需要协调行动。最后,有效、透明的沟通对于管理食品供应链上的食品安全至关重要,包括在初级生产中实施变革时。
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引用次数: 0
Investigation of Feedlot-level Use of a Direct-fed Microbial on Fecal Shedding of E. coli O157:H7 调查饲养场使用直接饲喂微生物菌剂对大肠杆菌 O157:H7 粪便脱落的影响。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-05 DOI: 10.1016/j.jfp.2024.100370
David O. Edache , Joaquin Baruch , Wanda Kreikemeier , Tiruvoor G. Nagaraja , David R. Renter , Dmitriy Smolensky , Natalia Cernicchiaro
Our objectives were to determine whether the feedlot-level use of a direct-fed microbial (DFM; Lactobacillus animalis LA51 and Propionibacterium freudenreichii PF24; Bovamine Defend®, 2 × 109 CFU/g) was associated with fecal prevalence and concentration of E. coli O157:H7, and determine pen- and feedlot-level risk factors associated with fecal E. coli O157:H7 prevalence in cattle pens from commercial feedlot operations. Twenty commercial feedlots in Nebraska, ten that included DFM (DFM) and ten that did not (no-DFM), were sampled during the summer of 2017. In each sampling month, 22 pen-floor fecal samples were collected from three pens in each feedlot. Samples were subjected to cultural and molecular procedures for the detection of E. coli O157:H7 (immunomagnetic separation, plating on selective media, followed by PCR confirmation) and spiral plating for quantification. A total of 1,320 samples from 180 pens of finishing cattle belonging to 20 feedlots, which were sampled three times throughout a 12-week period, were processed and tested. Across all feedlots and sampling months, the mean within-pen prevalence was 13.5% (95% CI = 2.6–47.4%). The association between DFM status and the within-pen prevalence of E. coli O157:H7 depended significantly (p < 0.05) on the sampling month. The second sampling month between late July and mid-August corresponded to the highest within-pen prevalence estimates reported in this study, with no-DFM pens having a higher prevalence than DFM pens. After accounting for the DFM status, and based on multivariable analyses, sampling month, average pen body weight, and weather conditions were significantly associated with the within-pen fecal prevalence of E. coli O157:H7. Collectively, these findings demonstrate that the use of a DFM containing Lactobacillus animalis LA51 and Propionibacterium freudenreichii PF26 in feedlots showed potential in reducing fecal E. coli O157:H7 prevalence in cattle during times when prevalence peaks.
我们的目标是确定饲养场一级使用直接饲喂微生物制剂(DFM;Lactobacillus animalis LA51和Propionibacterium freudenreichii PF24;Bovamine Defend®,2x109 CFU/g)是否与粪便中大肠杆菌O157:H7的流行率和浓度有关,并确定与商业饲养场运营的牛栏中粪便中大肠杆菌O157:H7流行率有关的牛栏和饲养场一级风险因素。2017 年夏季,对内布拉斯加州的 20 个商业饲养场进行了采样,其中 10 个包括 DFM(DFM),10 个不包括 DFM(无 DFM)。在每个采样月,从每个饲养场的三个围栏中收集了 22 份栏底粪样。对样本进行文化和分子程序检测大肠杆菌 O157:H7(免疫磁分离、在选择性培养基上培养,然后进行 PCR 确认),并进行螺旋培养定量。对来自 20 个饲养场 180 个育成牛栏的 1,320 份样本进行了处理和检测,这些样本在 12 周内采样三次。在所有饲养场和采样月份中,栏内平均流行率为 13.5%(95% CI = 2.6-47.4%)。DFM 状态与圈舍内大肠杆菌 O157:H7 感染率之间的关系显著(p
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引用次数: 0
Factors Affecting the Adhesion of Flour Particles to Stainless-steel Surfaces and Vacuum Dry-cleaning 影响面粉颗粒附着在不锈钢表面和真空干洗的因素。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-05 DOI: 10.1016/j.jfp.2024.100372
Ian M. Klug , Bradley P. Marks , Teresa M. Bergholz , Sanghyup Jeong
Recent outbreaks and recalls linked to flour-based products have highlighted the need for improved cleaning methods in low-moisture environments. The factors affecting adhesion forces of flour particles, and the vacuum cleaning methodologies to overcome these forces, need to be better understood. The objectives of this study were to: (1) Measure electrostatic charge build-up in flour under different environmental conditions (20, 40, 60% relative humidity at room temperature), (2) quantify how powder size (US standard No. 60–80 or 80–100 mesh), electrostatic charge (charged and uncharged), and relative humidity impact the force required to remove the powder from an electropolished 304 stainless steel coupon (8 × 8 × 0.2 cm), and (3) determine the most effective vacuum nozzle angle (0, 45, 90° relative to the surface) for cleaning. Chargeability (nC) of flour samples was assessed using Faraday cup electrometry, while the surface adhesion force of the flour particles was measured using a custom-built impact tester. The surface cleanliness after vacuum treatments was assessed using ATP (adenosine triphosphate) swabs and a luminometer. Charged flour samples at 20% relative humidity (RH) exhibited a significantly higher charge compared to those at 40 and 60% RH. Within the 60–80 mesh range, charged flour showed higher adhesion rates than uncharged samples at both 20 and 40% RH. However, in the 80–100 mesh range, charged flour did not show a significant difference in adhesion when compared to uncharged samples at any RH level. Additionally, at 60% RH, surface residues measured by ATP were significantly lower for a vacuum angle of 90° than for 0° across both 60–80 mesh and 80–100 mesh size ranges of wheat flour. The vacuum cleaning treatment proved capable of overcoming the increase in adhesion from triboelectric forces; however, trace flour residues were still detected on stainless steel surfaces postvacuuming, indicating that vacuuming alone may be insufficient.
最近发生的与面粉产品有关的疫情和召回事件凸显了在低湿度环境中改进清洁方法的必要性。需要更好地了解影响面粉颗粒附着力的因素以及克服这些附着力的真空清洁方法。本研究的目标是(1) 测量不同环境条件(室温下相对湿度分别为 20%、40%、60%)下面粉中的静电荷积聚情况;(2) 量化粉末大小(美国标准 60 - 80 目或 80 - 100 目)、静电荷(带电和不带电)和相对湿度对从电抛光 304 不锈钢试样(8 × 8 × 0.2 厘米)上去除粉末所需力的影响;(3) 确定最有效的真空清洁喷嘴角度(相对于表面的 0°、45°、90°)。使用法拉第杯电测法评估了面粉样品的荷电性(nC),同时使用定制的冲击力测试仪测量了面粉颗粒的表面附着力。使用 ATP(三磷酸腺苷)棉签和发光仪评估了真空处理后的表面清洁度。相对湿度(RH)为 20% 的带电面粉样品与相对湿度为 40% 和 60% 的样品相比,电荷量明显更高。在 60 - 80 目范围内,相对湿度为 20% 和 40% 时,带电面粉的粘附率均高于不带电的样品。然而,在 80 - 100 目范围内,在任何相对湿度条件下,带电面粉与不带电样品的粘附力都没有明显差异。此外,在 60% 相对湿度条件下,用 ATP 测量的小麦粉表面残留物在 60 - 80 目和 80 - 100 目粒度范围内,真空角 90° 明显低于真空角 0°。事实证明,真空清洁处理能够克服三电作用力导致的附着力增加,但在真空处理后的不锈钢表面仍检测到微量面粉残留,这表明仅靠真空处理可能还不够。
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引用次数: 0
Escherichia coli Survival on Dry Bulb Onions Treated with Crop Protection Sprays Prepared using Contaminated Water in the Treasure Valley Growing Region 宝藏谷种植区使用受污染的水制备农作物保护喷雾剂处理过的干球茎洋葱上的大肠杆菌存活率。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-05 DOI: 10.1016/j.jfp.2024.100373
Jason Racine , Alexandra Nerney , Samantha Kilgore , Tim Waters , Faith Critzer , Linda J. Harris , Stuart Reitz , Joy Waite-Cusic
Contaminated agricultural water has been implicated in produce-associated outbreaks, including dry bulb onions (Allium cepa). This study was designed to quantify risks associated with contaminated water used to prepare crop protection sprays applied immediately before the onset of field curing of dry bulb onions. Laboratory experiments determining the behavior of Salmonella and Escherichia coli in crop protection chemical solutions were performed to guide selection for field use. Field trials were conducted (2022, 2023) in eastern Oregon (Treasure Valley) using two onion cultivars (‘Red Wing’ and ‘Cometa’) inoculated with a rifampicin-resistant E. coli cocktail (3–4 log CFU/100 mL) suspended in fungicide solution or clay suspension, and applied with a backpack sprayer at the end of the growing season. Onions were sampled through the next 4 weeks of field curing and after 1 and 4–5 mos of postharvest storage. In 2022, onions were initially contaminated at a maximum cell density of 48 MPN/onion (Geometric mean (GM): 3.7 MPN/onion). At the end of curing, a single onion (out of 320) tested positive at 2 MPN/onion. In 2022, E. coli was not detected during postharvest storage (n = 160). In 2023, the application of contaminated sprays resulted in a maximum contamination of 275 MPN/onion (GM: 8.6 MPN/onion). At the end of the 2023 curing period, three out of 320 onions (0.9%) had detectable levels of E. coli (1–2 MPN/onion). Three ‘Cometa’ onions from the same plot that were treated with fungicide were positive for E. coli after 5 months of postharvest storage (2, 11, and 83 MPN/onion). These field trials indicate field curing conditions in the Treasure Valley help mitigate risks associated with contaminated water used for applying crop protection sprays. E. coli was detected on a small percentage of onions at low cell density after curing. The single onion with elevated E. coli populations after postharvest storage had internal damage characteristic of bacterial rot.
受污染的农用水与包括干球洋葱(Allium cepa)在内的农产品相关疫情有牵连。本研究旨在量化与受污染的水有关的风险,这些水用于在干球洋葱田间腌制开始前配制作物保护喷雾剂。实验室实验确定了沙门氏菌和大肠杆菌在作物保护化学溶液中的行为,以指导田间使用的选择。在俄勒冈州东部(金银谷)进行了田间试验(2022 年、2023 年),使用两种洋葱栽培品种("Red Wing "和 "Cometa")接种利福平抗性大肠杆菌鸡尾酒(3-4 log CFU/100 mL),将其悬浮在杀菌剂溶液或粘土悬浮液中,并在生长季节结束时使用背负式喷雾器施用。洋葱在接下来的 4 周田间腌制以及收获后 1 个月和 4-5 个月的贮藏过程中都进行了采样。2022 年,洋葱最初受到污染时的最大细胞密度为 48 MPN/洋葱(几何平均数 (GM):3.7 MPN/洋葱)。腌制结束时,320 个洋葱中只有一个洋葱的检测结果呈阳性,为 2 MPN/洋葱。2022 年,收获后贮藏期间未检测到大肠杆菌(n = 160)。2023 年,施用受污染的喷雾剂导致最大污染为 275 MPN/洋葱(转基因:8.6 MPN/洋葱)。2023 年腌制期结束时,320 个洋葱中有 3 个(0.9%)可检测到大肠杆菌(1-2 MPN/洋葱)。同一地块中经过杀菌剂处理的三个 "Cometa "洋葱在收获后储藏 5 个月后大肠杆菌呈阳性(2、11 和 83 MPN/onion)。这些田间试验表明,珍宝谷的田间腌制条件有助于降低与用于喷洒作物保护剂的受污染水有关的风险。在腌制后细胞密度较低的一小部分洋葱上检测到了大肠杆菌。收获后贮藏期间,大肠杆菌数量升高的单个洋葱出现了细菌性腐烂的内部损伤。
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引用次数: 0
Profiling the Enterobacterales Community Isolated from Retail Foods in England 分析从英格兰零售食品中分离出的肠杆菌群落。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-02 DOI: 10.1016/j.jfp.2024.100369
Richard Harding-Crooks , Amanda L. Jones , Darren L. Smith , Séamus Fanning , Edward M. Fox
Enterobacterales include foodborne pathogens of importance to public health and are often targeted in food surveillance programs as both safety and hygiene indicators. Furthermore, Enterobacterales are important in the context of antimicrobial resistance dissemination, also impacting infection treatment efficacy. In this study, the prevalence and characteristics of Enterobacterales in UK retail foods were examined. From 110 retail food samples, 253 Enterobacterales were recovered, with 16S rRNA sequencing revealing a diverse species community, including enteropathogens; the most common were Proteus mirabilis and Escherichia coli (18% each). Antimicrobial resistance was common, with 160/253 (63%) isolates being resistant to at least 1 antimicrobial. Resistance to all tested antimicrobials was observed. Thirteen percent of isolates were multidrug resistant, including 2 isolates each resistant to 8 or 9 of 9 antimicrobials tested. Klebsiella isolates possessed relatively higher levels of antimicrobial resistance to other species. Hafnia, Kluyvera, and Proteus isolates produced significantly higher biofilm biomass than Klebsiella (p = 0.038, 0.028, and 0.042, respectively) or Escherichia (p = 0.001, 0.008, and 0.001, respectively). Simultaneous curli fimbriae and cellulose production was noted in 7% of isolates at 37 °C, but not at 15 °C. This research demonstrates a high diversity of Enterobacterales within UK retail foods, alongside notable antimicrobial resistance phenotypes in enteropathogenic species, highlighting the need for effective surveillance and interventions.
肠杆菌包括对公共卫生具有重要意义的食源性病原体,通常作为安全和卫生指标成为食品监测计划的目标。此外,肠杆菌对抗菌药耐药性的传播也很重要,还会影响感染治疗的效果。本研究调查了英国零售食品中肠杆菌的流行情况和特征。从 110 份零售食品样本中回收了 253 个肠杆菌,16S rRNA 测序结果表明,这些肠杆菌的种类繁多,其中包括肠道致病菌;最常见的是变形杆菌和大肠杆菌(各占 18%)。抗菌药耐药性很常见,160/253 个分离菌株(63%)对至少一种抗菌药产生耐药性。对所有测试过的抗菌药都有耐药性。13%的分离菌株对多种药物产生耐药性,其中有 2 个分离菌株对 9 种测试抗菌药物中的 8 或 9 种产生耐药性。与其他菌种相比,克雷伯氏菌分离物的抗菌药耐药性水平相对较高。哈夫尼亚菌、克鲁维拉菌和变形杆菌分离物产生的生物膜生物量明显高于克雷伯氏菌(分别为 p=0.038、0.028 和 0.042)或埃希氏菌(分别为 p=0.001、0.008 和 0.001)。7% 的分离菌在 37°C 时同时产生卷曲缘毛和纤维素,而在 15°C 时则没有。这项研究表明,英国零售食品中肠杆菌的多样性很高,同时肠致病菌的抗菌药耐药性表型也很明显,因此需要进行有效的监控和干预。
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引用次数: 0
Extended-spectrum ß-lactamase (ESBL)- and Carbapenemase-producing Enterobacterales Isolated from Fresh Herbs and Salads at Retail Level in Switzerland 从瑞士零售的新鲜香草和沙拉中分离出的产广谱ß-内酰胺酶(ESBL)和碳青霉烯酶的肠杆菌。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-02 DOI: 10.1016/j.jfp.2024.100368
Silvan Tresch , Michael Biggel , Manuela Schnyder , Magdalena Nüesch-Inderbinen , Roger Stephan
Fresh produce is usually consumed raw or minimally processed, making it a potential vehicle for the transmission of antimicrobial-resistant (AMR) microorganisms to humans. The objective of the study was to assess the occurrence of extended-spectrum ß-lactamase (ESBL)- and carbapenemase-producing Enterobacterales (ESBL-E and CPE), respectively, in 118 fresh herbs and 101 bagged salads collected at retail level in Switzerland and to characterize the isolates’ phenotypic and genotypic properties using culture-based methods and whole genome sequencing (WGS).
Of the fresh herbs, 6/118 contained ESBL-E and 7/118 yielded CPE. Of the salads, 13/101 contained ESBL-E and 1/101 CPE. Antimicrobial susceptibility testing (AST) identified 9/29 isolates as multidrug-resistant (MDR).
ESBL-E were Escherichia coli (n = 6), Klebsiella pneumoniae (n = 4) Enterobacter chuandaensis (n = 1), and Kluyvera spp. (n = 1) carrying ß-lactamase (bla) genes belonging to the cefotaximase-München (blaCTX-M)-groups, Proteus spp. (n = 1) containing Hôpital-Universitaire-de-Genève-bla (blahugA), Raoultella ornithinolytica (n = 1) carrying sulfhydryl reagent variable bla (blaSHV), and Serratia fonticola (n = 7) carrying S. fonticula bla (blaFONA) genes. CPE were Enterobacter asburiae (n = 1) E. cloacae (n = 6) and E. vonholyi (n = 1) carrying imipenemase bla (blaIMI) genes.
Several K. pneumoniae sequence types (STs) were identified (ST967, ST628, ST219, and ST1823), which have been linked to human disease and nosocomial outbreaks. They carried blaCTX-M-15 on plasmids detected globally in environmental and clinical samples. E. coli (ST10, ST48, ST609, ST2040, ST6215 and ST3580) and enterotoxigenic E. coli (ETEC) ST2040 carrying blaCTX-M-15 were found. E. cloacae (ST820 and ST1516) with blaIMI-1 have been found previously in clinical settings and community outbreaks.
The occurrence and consumption of fresh produce containing MDR ESBL-E and CPE pose substantial public health risks and raise significant food safety concerns.
新鲜农产品通常未经加工或加工程度极低,因此有可能成为向人类传播耐抗菌素(AMR)微生物的媒介。这项研究的目的是评估在瑞士零售市场收集的 118 种新鲜草药和 101 种袋装沙拉中分别存在的广谱ß-内酰胺酶(ESBL)和碳青霉烯酶肠杆菌(ESBL-E 和 CPE),并利用培养方法和全基因组测序(WGS)鉴定分离物的表型和基因型特性。在新鲜香草中,6/118 含有 ESBL-E,7/118 产生了 CPE。在沙拉中,13/101 含有 ESBL-E,1/101 产生 CPE。抗菌药物药敏试验(AST)确定 9/29 株分离物具有多重耐药性(MDR)。ESBL-E为大肠埃希菌(n=6)、肺炎克雷伯菌(n=4)、川大肠杆菌(n=1)和Kluyvera属(n=1),它们携带属于头孢他啶酶-慕尼黑(blaCTX-M)-群的ß-内酰胺酶(bla)基因;ESBL-E为变形杆菌(n=1)、肺炎克雷伯菌(n=4)、川大肠杆菌(n=1)和Kluyvera属(n=1),它们携带属于头孢他啶酶-慕尼黑(blaCTX-M)-群的ß-内酰胺酶(bla)基因。(n=1)含有 Hôpital- Universitaire-de-Genève-bla (blahugA)、Raoultella ornithinolytica (n=1) 携带巯基试剂变异 bla (blaSHV),以及 Serratia fonticola (n=7) 携带 S. fonticula bla (blaFONA) 基因。CPE为携带亚胺培南酶 bla(blaIMI)基因的阿斯布氏肠杆菌(n=1)、泄殖腔肠杆菌(n=6)和冯霍利肠杆菌(n=1)。发现了几种肺炎克氏菌序列类型(STs)(ST967、ST628、ST219 和 ST1823),它们与人类疾病和医院内疫情爆发有关。它们携带的 blaCTX-M-15 质粒在全球环境和临床样本中都能检测到。发现了携带 blaCTX-M-15 的大肠杆菌(ST10、ST48、ST609、ST2040、ST6215 和 ST3580)和肠毒性大肠杆菌(ETEC)ST2040。以前在临床环境和社区疫情爆发中发现过携带 blaIMI-1 的泄殖腔杆菌(ST820 和 ST1516)。含有 MDR ESBL-E 和 CPE 的新鲜农产品的出现和消费对公众健康构成了巨大风险,并引发了重大的食品安全问题。
{"title":"Extended-spectrum ß-lactamase (ESBL)- and Carbapenemase-producing Enterobacterales Isolated from Fresh Herbs and Salads at Retail Level in Switzerland","authors":"Silvan Tresch ,&nbsp;Michael Biggel ,&nbsp;Manuela Schnyder ,&nbsp;Magdalena Nüesch-Inderbinen ,&nbsp;Roger Stephan","doi":"10.1016/j.jfp.2024.100368","DOIUrl":"10.1016/j.jfp.2024.100368","url":null,"abstract":"<div><div>Fresh produce is usually consumed raw or minimally processed, making it a potential vehicle for the transmission of antimicrobial-resistant (AMR) microorganisms to humans. The objective of the study was to assess the occurrence of extended-spectrum ß-lactamase (ESBL)- and carbapenemase-producing Enterobacterales (ESBL-E and CPE), respectively, in 118 fresh herbs and 101 bagged salads collected at retail level in Switzerland and to characterize the isolates’ phenotypic and genotypic properties using culture-based methods and whole genome sequencing (WGS).</div><div>Of the fresh herbs, 6/118 contained ESBL-E and 7/118 yielded CPE. Of the salads, 13/101 contained ESBL-E and 1/101 CPE. Antimicrobial susceptibility testing (AST) identified 9/29 isolates as multidrug-resistant (MDR).</div><div>ESBL-E were <em>Escherichia coli</em> (<em>n</em> = 6), <em>Klebsiella pneumoniae</em> (<em>n</em> = 4) <em>Enterobacter chuandaensis</em> (<em>n</em> = 1), and <em>Kluyvera</em> spp. (<em>n</em> = 1) carrying ß-lactamase (<em>bla</em>) genes belonging to the cefotaximase-München (<em>bla</em><sub>CTX-M</sub>)-groups, <em>Proteus</em> spp. (<em>n</em> = 1) containing Hôpital-Universitaire-de-Genève-<em>bla</em> (<em>bla</em><sub>hugA</sub>), <em>Raoultella ornithinolytica</em> (<em>n</em> = 1) carrying sulfhydryl reagent variable <em>bla (bla</em><sub>SHV</sub>), and <em>Serratia fonticola</em> (<em>n</em> = 7) carrying <em>S. fonticula bla</em> (<em>bla</em><sub>FONA</sub>) genes. CPE were <em>Enterobacter asburiae</em> (<em>n</em> = 1) <em>E. cloacae</em> (<em>n</em> = 6) and <em>E. vonholyi</em> (<em>n</em> = 1) carrying imipenemase <em>bla</em> (<em>bla</em><sub>IMI</sub>) genes.</div><div>Several <em>K. pneumoniae</em> sequence types (STs) were identified (ST967, ST628, ST219, and ST1823), which have been linked to human disease and nosocomial outbreaks. They carried <em>bla</em><sub>CTX-M-15</sub> on plasmids detected globally in environmental and clinical samples. <em>E. coli</em> (ST10, ST48, ST609, ST2040, ST6215 and ST3580) and enterotoxigenic <em>E. coli</em> (ETEC) ST2040 carrying <em>bla</em><sub>CTX-M-15</sub> were found. <em>E. cloacae</em> (ST820 and ST1516) with <em>bla</em><sub>IMI-1</sub> have been found previously in clinical settings and community outbreaks.</div><div>The occurrence and consumption of fresh produce containing MDR ESBL-E and CPE pose substantial public health risks and raise significant food safety concerns.</div></div>","PeriodicalId":15903,"journal":{"name":"Journal of food protection","volume":"87 11","pages":"Article 100368"},"PeriodicalIF":2.1,"publicationDate":"2024-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142375555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prevalence, Characteristics, and Selection of Bacillus cereus Subgroups from Dairy Products for Challenge Testing and Predictive Model Development 乳制品中蜡样芽孢杆菌亚群的流行率、特征和选择,用于挑战测试和预测模型开发。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-30 DOI: 10.1016/j.jfp.2024.100367
Maryam Maktabdar , Lisbeth Truelstrup Hansen , Ellen Wemmenhove , Elissavet Gkogka , Paw Dalgaard
Prevalence, toxin gene profiles, lactose fermentation, and growth responses of B. cereus sensu lato subgroups in various dairy and dairy alternative products and ingredients were studied to identify relevant isolates for challenge testing and model development to predict and manage growth responses. Out of 71 examined products or ingredients, 51 B. cereus s.l. isolates were obtained from 35 positive samples (49% prevalence). These 51 isolates along with 18 additional dairy isolates and 12 B. cereus s.l. reference strains were identified using MALDI-TOF. The 81 isolates were further characterized by panC sequencing, testing for cold shock and toxin genes (cspA; hbl, nhe, CytK and ces), lactose fermentation, and study of growth rates (µmax) under various conditions (45 °C, 10 °C, 6% NaCl, pH 5.1), resulting in 298 µmax-values. These conditions were selected to differentiate mesophilic and psychrotolerant strains and to identify tolerant isolates. Dairy powders (83%), pasteurized upconcentrated cheese whey (43%), and cheeses (42%) had the highest prevalences of B. cereus s.l. and the highest concentrations in positive samples (5–100 CFU/g or ml). The panC groups II, III, IV, VI, and VIII were detected among the dairy isolates, with 97% harboring one or more toxin genes. Lactose fermentation was observed in 42% of isolates, with lactose-fermenting B. cereus s.l. isolates of panC groups III and IV dominant in dairy powders. Growth rates of B. cereus s.l. varied considerably, among and within panC groups of the dairy isolates. Based on the highest growth rates at 45 °C, 10 °C, 6% NaCl, pH 5.1, panC group membership, toxin genes profiles, and lactose fermentation ability, two cocktails of “mesophilic” or “psychrotolerant” isolates were selected. These strain cocktails can be used in future challenge testing and predictive food microbiology studies to evaluate and manage the growth of B. cereus s.l. in dairy products and ingredients.
研究了各种乳制品和乳制品替代产品及配料中的蜡样芽孢杆菌亚群的流行率、毒素基因图谱、乳糖发酵和生长反应,以确定用于挑战测试和模型开发的相关分离物,从而预测和管理生长反应。在 71 种受检产品或配料中,从 35 个阳性样本中获得了 51 个蜡样芽孢杆菌分离物(流行率为 49%)。利用 MALDI-TOF 对这 51 个分离株、另外 18 个乳制品分离株和 12 个蜡样芽孢杆菌参考菌株进行了鉴定。通过 panC 测序、冷休克基因和毒素基因(cspA、hbl、nhe、CytK 和 ces)检测、乳糖发酵以及各种条件(45°C、10°C、6% NaCl、pH 5.1)下的生长率(µmax)研究,对这 81 个分离株进行了进一步鉴定,得出了 298 个 µmax 值。选择这些条件是为了区分嗜中性菌株和心理耐受性菌株,并确定耐受性分离菌株。乳粉(83%)、巴氏杀菌浓缩奶酪乳清(43%)和奶酪(42%)中蜡样芽孢杆菌的流行率最高,阳性样品中的浓度也最高(5-100 CFU/g 或 ml)。在乳制品分离物中检测到了 PanC II、III、IV、VI 和 VIII 组,其中 97% 的分离物携带一种或多种毒素基因。在 42% 的分离物中观察到乳糖发酵现象,乳粉中主要是 panC 组 III 和 IV 的乳糖发酵蜡样芽孢杆菌分离物。在乳制品分离物的 panC 组间和组内,蜡样芽孢杆菌的生长率差异很大。根据在 45°C、10°C、6% NaCl、pH 值 5.1 条件下的最高生长率、panC 群成员、毒素基因图谱和乳糖发酵能力,选出了两种 "中嗜性 "或 "心理耐受性 "分离菌株鸡尾酒。这些混合菌株可用于未来的挑战测试和预测性食品微生物学研究,以评估和管理乳制品和配料中蜡样芽孢杆菌的生长。
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引用次数: 0
Effective Decontamination Methods for Shiga Toxin-producing Escherichia coli on Beef Surfaces for Application in Beef Carcass Hygiene 针对牛肉表面产志贺毒素大肠杆菌的有效净化方法,以应用于牛肉屠体卫生。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-26 DOI: 10.1016/j.jfp.2024.100366
Shouhei Hirose , Akiko Tomaru , Hiroshi Akiyama , Yukiko Hara-Kudo
Effective methods for decontamination of Shiga toxin-producing Escherichia coli (STEC) on beef were evaluated by 48 mL spraying, 100 mL, and 500 mL flushing with ethanol, hydrogen peroxide, peracetic acid, acidified sodium chlorite, and sodium hypochlorite in this study. The flushing with 500 mL of 1,000 ppm peracetic acid was most effective, reducing pathogens by 2.8 log CFU/cm2, followed by 1,200 ppm acidified sodium chlorite. The spraying with 1,000 ppm peracetic acid reduced pathogens by 1.6 log CFU/cm2. The flushing with 500 mL of 200 and 500 ppm acidified sodium chlorite, and 50, 100, 200, and 500 ppm peracetic acid significantly reduced the STEC population compared with those treated with distilled water (p < 0.05), reducing pathogens by 2.1, 2.4, 1.6, 1.8, 2.1 and 2.4 log CFU/cm2, respectively. Additionally, the flushing with 500 mL of 200 and 500 ppm acidified sodium chlorite significantly changed the color of beef samples (p < 0.05), whereas 100–500 ppm peracetic acid did not significantly change the color (p > 0.05). The flushing with 500 mL of 200 and 500 ppm acidified sodium chlorite and 200 and 500 ppm peracetic acid significantly changed the odor of beef samples compared with those treated with distilled water (p < 0.05). There was no difference in the reduction of STEC population between peracetic acid treatment at 25 °C and 55 °C, with or without washing with sterilized distilled water after decontamination. Washing with distilled water after flushing with peracetic acid tended to reduce the odor of the samples. These results suggest that treatment with 100, 200, and 500 ppm peracetic acid, followed by washing with distilled water, might reduce the STEC population without retaining the odor of the sanitizer.
本研究评估了用乙醇、过氧化氢、过氧乙酸、酸化亚氯酸钠和次氯酸钠对牛肉上产志贺毒素大肠杆菌(STEC)进行 48 mL 喷洒、100 mL 和 500 mL 冲洗的有效净化方法。用 500 mL 1,000 ppm 过氧乙酸冲洗最有效,可减少病原体 2.8 log CFU/cm2,其次是 1,200 ppm 酸化亚氯酸钠。喷洒 1,000 ppm 过氧乙酸可使病原体减少 1.6 log CFU/cm2。与蒸馏水相比,用 500 mL 200 和 500 ppm 的酸化亚氯酸钠以及 50、100、200 和 500 ppm 的过氧乙酸冲洗可显著减少 STEC 的数量(p < 0.05),病原体分别减少了 2.1、2.4、1.6、1.8、2.1 和 2.4 log CFU/cm2。此外,用 500 mL 200 ppm 和 500 ppm 的酸化亚氯酸钠冲洗牛肉样品,可显著改变颜色(p < 0.05),而 100-500 ppm 的过氧乙酸则不会显著改变颜色(p > 0.05)。与用蒸馏水处理的牛肉样品相比,用 500 mL 200 ppm 和 500 ppm 的酸化亚氯酸钠以及 200 ppm 和 500 ppm 的过氧乙酸冲洗可明显改变牛肉样品的气味(p < 0.05)。在 25 摄氏度和 55 摄氏度条件下进行过氧乙酸处理,去污后使用或不使用灭菌蒸馏水清洗,在减少 STEC 数量方面没有差异。用过氧乙酸冲洗后再用蒸馏水清洗往往会减少样品的气味。这些结果表明,用 100、200 和 500 ppm 的过氧乙酸处理后再用蒸馏水清洗,可能会减少 STEC 的数量,但不会保留消毒剂的气味。
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引用次数: 0
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Journal of food protection
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