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Salmonella in Backyard Poultry: Prevalence, Outbreaks, Trends, Antimicrobial Resistance, and Emerging Risks 沙门氏菌在后院家禽:流行,爆发趋势,抗菌素耐药性,和新出现的风险。
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2026-01-20 DOI: 10.1016/j.jfp.2026.100703
Richard Y. Otwey, Sandesh Chapagain, Unishma Ghimire, Janak Dhakal
Salmonella infections associated with backyard poultry in the United States are on a steady rise, corresponding to the increase in backyard poultry farming. Over the past decade, the CDC has reported a total of 9,923 cases of human salmonellosis across multiple states linked with backyard poultry, most of them involving multidrug-resistant (MDR) strains, underscoring the significance and sustained public health threat. This review evaluates and synthesizes national surveillance data, outbreak reports, and published studies to examine the prevalence, serotype distribution, antimicrobial resistance (AMR) patterns, and epidemiological trends of Salmonella in backyard poultry from 2012 to 2025. Investigations of multistate outbreaks in these 14 years showed consistent involvement of six serotypes: Enteritidis, Infantis, Typhimurium, Hadar, Indiana, and Mbandaka, with Enteritidis and Infantis being the most common (11 times each in 14 years) and Infantis demonstrating early and recurrent MDR profiles. Children < 5 years represented close to a third of all cases. Epidemiological data point to multiple factors contributing to ongoing spread, including hatchery-level contamination, limited biosecurity, close human–animal interactions, and involvement of environmental reservoirs such as wildlife. Local studies from Maryland and California showed the presence of MDR Salmonella in backyard birds, with MDR observed across several antimicrobial classes. Very little is known and documented about the use of antibiotics in backyard poultry, and it often lacks veterinary oversight, raising AMR concerns. Though the FDA rules limit the use of medically important drugs in livestock and poultry, surveillance mostly focuses on commercial farms. This review highlights the need to expand AMR surveillance to include backyard flocks, improve hatchery sanitation, and strengthen public education on safe animal handling, which are essential steps toward reducing this growing public health risk.
在美国,与后院家禽相关的沙门氏菌感染正在稳步上升,与后院家禽养殖的增加相对应。在过去十年中,美国疾病控制与预防中心报告了多个州与后院家禽有关的总共9923例人类沙门氏菌病病例,其中大多数涉及耐多药(MDR)菌株,强调了其重要性和持续的公共卫生威胁。本综述评估和综合了国家监测数据、疫情报告和已发表的研究,以调查2012年至2025年家禽中沙门氏菌的患病率、血清型分布、抗菌素耐药性(AMR)模式和流行病学趋势。在这14年中对多州暴发的调查显示,六种血清型始终涉及:肠炎、婴幼儿、鼠伤寒、哈达尔、印第安纳和姆班达卡,其中肠炎和婴幼儿最为常见(14年中各11次),婴幼儿表现出早期和复发性耐多药耐药特征。5岁以下儿童占所有病例的近三分之一。流行病学数据指出了导致持续传播的多种因素,包括孵化场水平的污染、有限的生物安全、人与动物的密切相互作用以及野生动物等环境宿主的参与。马里兰州和加利福尼亚州的当地研究表明,后院鸟类中存在耐多药沙门氏菌,在几种抗微生物药物类别中均观察到耐多药沙门氏菌。关于在后院家禽中使用抗生素的了解和记录很少,而且往往缺乏兽医监督,引起了对抗生素耐药性的担忧。尽管FDA规定限制在牲畜和家禽中使用医学上重要的药物,但监督主要集中在商业农场。本综述强调有必要扩大抗菌素耐药性监测,将后院禽群包括在内,改善孵化场卫生条件,并加强安全处理动物的公众教育,这些都是减少这一日益增长的公共卫生风险的必要步骤。
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引用次数: 0
In Vitro and In Planta Evaluation of Bacillus Strains Against a Strain of Enteropathogenic Escherichia coli in Mung Bean Sprouts 芽孢杆菌对绿豆芽中一株致病性大肠杆菌的体外和植物性研究。
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2026-01-31 DOI: 10.1016/j.jfp.2026.100713
Madhvi Chahar , Yulia Kroupitski, Rachel Gollop, Moshe Shemesh, Shlomo Sela Saldinger
Edible sprouts, including mung bean sprouts, are nutritionally valuable but have frequently been associated with foodborne outbreaks. Control measures like seed disinfection have not fully prevented outbreaks. This study evaluated the ability of spore-forming Bacillus strains isolated from mung bean sprouts to inhibit E. coli O55:H7 colonization during seed sprouting. Several Bacillus isolates added to the germinating seeds reduced E. coli populations in sprouts by 4.0–5.4 log CFU/g compared to untreated controls. While some strains impacted sprout growth, highly antagonistic isolates, such as MBm1 and MBm6, demonstrated robust activity with no adverse effects. Notably, in vitro antagonistic activity on agar plate did not consistently predict inhibition of E. coli in sprout colonization assays, whereas colony morphology was a better predictor for in planta activity. Bacillus strains formed complex biofilms on agar and sprout surfaces, suggesting biofilm-mediated antagonism. Fluorescence microscopy confirmed reduced E. coli attachment and growth in the presence of antagonistic Bacillus strains. These findings indicate that Bacillus strains may serve as effective biocontrol agents to enhance sprout safety, and that multistrain formulations may be required for broader protection. Further research is needed to validate efficacy against diverse pathogens under commercial conditions.
食用芽,包括绿豆芽,营养价值很高,但经常与食源性疾病暴发有关。种子消毒等控制措施并没有完全阻止疫情的爆发。本研究评估了从绿豆芽中分离的芽孢杆菌菌株在种子发芽过程中抑制大肠杆菌O55:H7定植的能力。与未处理的对照组相比,在发芽种子中添加几种分离芽孢杆菌可使芽发芽芽中的大肠杆菌数量减少4.0-5.4 log CFU/g。虽然有些菌株会影响芽的生长,但高度拮抗的菌株,如MBm1和MBm6,表现出高度的拮抗活性,没有不良反应。值得注意的是,琼脂板上的体外拮抗活性并不能一致地预测芽定殖试验中大肠杆菌的抑制作用,而菌落形态可以更好地预测植物活性。芽孢杆菌菌株在琼脂和芽芽表面形成复杂的生物膜,提示生物膜介导的拮抗作用。荧光显微镜证实,在拮抗芽孢杆菌菌株存在下,大肠杆菌附着和生长减少。这些发现表明芽孢杆菌菌株可以作为有效的生物防治剂来提高芽苗的安全性,并且可能需要多菌株制剂来提供更广泛的保护。需要进一步的研究来验证对不同病原体和商业条件下的有效性。
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引用次数: 0
Research Advances in Rapid Detection Technologies for Multiple Mycotoxins 多种真菌毒素快速检测技术的研究进展
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2026-01-18 DOI: 10.1016/j.jfp.2026.100702
Ruige Hu , Zimeng Guo , Jun Wang , Mo Zhou , Kai Zhu , Yunlong Xu
Mycotoxins are ubiquitous contaminants throughout the food supply chain and represent a significant threat to global food safety and public health due to their high carcinogenic potential, teratogenic effects, and the synergistic toxicity arising from multiple cooccurring mycotoxins. This review systematically summarizes recent advances in rapid mycotoxin detection technologies, with particular emphasis on high-throughput detection strategies and mechanistic innovations in immunoassays, molecular biology-based methods, biosensors and microarrays, and microfluidic chip technologies. It highlights a clear transition from single-analyte detection toward multichannel, integrated, and intelligent sensing platforms, alongside substantial progress in nanomaterial engineering, signal transduction and decoding, and device miniaturization. By elucidating the underlying mechanisms of each detection method, the review critically analyzes their technical strengths, identifies existing limitations in practical applications, and discusses potential directions for future development. This work aims to provide a theoretical foundation for the iterative innovation of rapid mycotoxin detection technologies and to support real-time monitoring and precision control throughout all stages of the food supply chain.
真菌毒素是食品供应链中普遍存在的污染物,由于其高致癌潜力、致畸作用以及多种真菌毒素共同产生的协同毒性,对全球食品安全和公众健康构成重大威胁。本文系统总结了真菌毒素快速检测技术的最新进展,重点介绍了高通量检测策略和免疫分析、基于分子生物学的方法、生物传感器和微阵列以及微流控芯片技术方面的机制创新。它强调了从单一分析物检测到多通道、集成和智能传感平台的明显转变,以及纳米材料工程、信号转导和解码以及设备小型化方面的实质性进展。通过阐明每种检测方法的潜在机制,本文批判性地分析了它们的技术优势,确定了实际应用中的现有限制,并讨论了未来发展的潜在方向。本研究旨在为快速霉菌毒素检测技术的迭代创新提供理论基础,并支持食品供应链各个阶段的实时监测和精确控制。
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引用次数: 0
Microorganisms and Physicochemical Factors Controlling Biogenic Amines During Cheese Ripening: A Systematic Review 奶酪成熟过程中控制生物胺的微生物和理化因素:系统综述。
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2026-01-04 DOI: 10.1016/j.jfp.2025.100694
Fatemeh Tashi , Mansoureh Taghizadeh , Asma Afshari
Biogenic amines are nitrogenous compounds formed by amino acid decarboxylation, and their excessive accumulation in cheese may cause adverse health effects. This systematic review aimed to evaluate the effectiveness of probiotic strains and physicochemical factors in reducing biogenic amine levels during cheese ripening. Following PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines, a comprehensive literature search was conducted in PubMed, Scopus, Web of Science, ScienceDirect, and Google Scholar for studies published between 2010 and 2024. Fourteen studies met the inclusion criteria. Among the identified biogenic amines, tyramine and histamine were most frequently reported at high concentrations. The combination of Lactobacillus acidophilus and Lactiplantibacillus plantarum demonstrated the highest efficacy, achieving up to 80% reduction in total biogenic amine levels. Optimal physicochemical conditions, including maintaining a pH range of 5.0–5.4, a ripening temperature around 15 °C, and a maturation period of 3–4 months, enhanced the efficiency of probiotic interventions. Environmental factors such as salt, moisture, fat content, and packaging methods significantly influenced biogenic amine accumulation. Integrating selected probiotics with controlled ripening parameters can minimize biogenic amine levels and improve cheese safety and quality. However, due to heterogeneity in probiotic strains, cheese types, and analytical techniques among the included studies, further standardized and large-scale investigations are required to better understand the mechanisms and optimize strategies for biogenic amine reduction in cheese production.
生物胺是由氨基酸脱羧形成的含氮化合物,它们在奶酪中的过量积累可能会对健康造成不利影响。本系统综述旨在评价益生菌菌株和理化因素在降低奶酪成熟过程中生物胺水平方面的有效性。根据PRISMA(系统评价和荟萃分析的首选报告项目)指南,在PubMed, Scopus, Web of Science, ScienceDirect和谷歌Scholar中进行了全面的文献检索,检索了2010年至2024年间发表的研究。14项研究符合纳入标准。在已鉴定的生物胺中,酪胺和组胺以高浓度最为常见。嗜酸乳杆菌和植物乳杆菌的组合显示出最高的功效,达到80%的总生物胺水平降低。最佳的理化条件,包括保持pH在5.0-5.4范围内,成熟温度在15℃左右,成熟期为3-4个月,可以提高益生菌干预的效率。盐、水分、脂肪含量和包装方法等环境因素对生物胺积累有显著影响。将选定的益生菌与控制成熟参数相结合,可以最大限度地降低生物胺水平,提高奶酪的安全性和质量。然而,由于所纳入的研究中益生菌菌株、奶酪类型和分析技术的异质性,需要进一步进行标准化和大规模的研究,以更好地了解奶酪生产中生物胺还原的机制和优化策略。
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引用次数: 0
Structural Equation Modeling of Food Safety Knowledge, Attitude, and Practice among Vendors and Customers in an Informal Fruit and Vegetable Market: Evidence from Iran 非正式蔬果市场中商贩和顾客的食品安全知识、态度和行为的结构方程模型:来自伊朗的证据。
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2026-01-04 DOI: 10.1016/j.jfp.2025.100693
Ali Almasi , Samaneh Khademikia , Mohammad Hossein Mohamadi , Farid Nayebi
Food safety in low- and middle-income countries (LMIC) is often compromised by informal fruit and vegetable markets due to poor infrastructure, weak oversight, and unsafe handling. While the Knowledge-Attitude-Practice (KAP) framework is widely applied, links between knowledge and practice in these settings remain unclear. This study assessed KAP profiles of 111 vendors and 384 customers in an informal market in Kermanshah, Iran. The market mainly sells fresh vegetables (80–85%) and cut fruits (15–20%), typically displayed without refrigeration. Validated questionnaires revealed that only 23.4% of vendors met acceptable food safety standards, and 60% stored cut fruits improperly. Vendors, despite greater awareness, showed poorer hygiene than customers (p < 0.001), who practiced safer behaviors such as hand hygiene and reusable bag use. Structural Equation Modeling indicated that knowledge influenced practice directly (β = 0.35) and indirectly via attitude (β = 0.42), with attitude being the strongest predictor (β = 0.50, p < 0.001). Prior municipal training increased vendors’ odds of high KAP scores 4.35-fold (95% CI: 1.20–16.7). Findings highlight the need for tailored interventions in LMICs’ informal markets, combining vendor training, practical support, and infrastructure improvements to close the knowledge–practice gap.
低收入和中等收入国家的食品安全往往受到非正规水果和蔬菜市场的影响,原因是基础设施薄弱、监督不力和处理不安全。虽然知识-态度-实践(KAP)框架被广泛应用,但在这些环境中,知识与实践之间的联系尚不清楚。本研究评估了伊朗Kermanshah一个非正式市场的111位供应商和384位顾客的KAP概况。市场主要销售新鲜蔬菜(80-85%)和切块水果(15-20%),通常没有冷藏。经验证的调查问卷显示,仅有23.4%的商贩符合食品安全标准,60%的商贩切果储存不当。尽管供应商意识更强,但他们的卫生状况却比顾客差
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引用次数: 0
Development of Machine-Learning Models for Predicting Escherichia coli O157:H7 Inactivation on Fresh-Cut Lettuce during Chlorine Washing 预测鲜切生菜氯洗过程中大肠杆菌O157:H7失活的机器学习模型的开发
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2025-12-18 DOI: 10.1016/j.jfp.2025.100686
Fatih Tarlak , Arícia Possas , Guiomar Denisse Posada-Izquierdo , Francisco Jiménez-Jiménez , Fernando Pérez-Rodríguez
Minimally processed leafy greens are a recurrent vehicle for E. coli O157:H7 outbreaks, and chlorine washing remains the primary in-plant hurdle to limit cross-contamination. Yet, the effectiveness of chlorine depends on interacting factors that challenge conventional kinetic models. This study generated a laboratory data set describing E. coli O157:H7 reductions on fresh-cut iceberg lettuce across free-chlorine concentrations of 0–150 mg L−1 and immersion times of 0–150 s at 4.5 °C. A traditional inactivation model was fitted in MATLAB and compared with three machine-learning (ML) algorithms—support-vector regression (SVR), random-forest regression (RFR), and Gaussian-process regression (GPR)—trained on the same data. Compared to the traditional model (RMSE 0.392; R2 0.721), machine-learning approaches improved predictive accuracy, with GPR (RMSE 0.283; R2 0.852) and SVR (RMSE 0.298; R2 0.836) showing the greatest gains. All ML models maintained stability across validation folds, demonstrating strong generalizability. A user-friendly MATLAB application integrating the fitted models was released as open-source software to facilitate industry and regulatory uptake. These findings confirm the value of data-driven methods for modeling chlorine‐wash performance and offer an accessible decision-support tool for optimizing process parameters, thereby helping to reduce the public-health burden associated with leafy-green–related outbreaks.
最低限度加工的绿叶蔬菜是大肠杆菌O157:H7爆发的反复载体,氯洗涤仍然是限制交叉污染的主要工厂内障碍。然而,氯的有效性取决于挑战传统动力学模型的相互作用因素。本研究生成了一个实验室数据集,描述了在游离氯浓度为0-150 mg L-1和在4.5°C下0-150 s的浸泡时间下,新鲜切的卷心莴苣上大肠杆菌O157:H7的减少情况。在MATLAB中拟合传统的失活模型,并与在相同数据上训练的三种机器学习(ML)算法——支持向量回归(SVR)、随机森林回归(RFR)和高斯过程回归(GPR)进行比较。与传统模型(RMSE 0.392; R2 0.721)相比,机器学习方法提高了预测精度,其中GPR (RMSE 0.283; R2 0.852)和SVR (RMSE 0.298; R2 0.836)的收益最大。所有ML模型都保持了跨验证折叠的稳定性,展示了强大的通用性。一个用户友好的MATLAB应用程序集成拟合模型作为开源软件发布,以促进行业和监管机构的吸收。这些发现证实了数据驱动方法对氯洗涤性能建模的价值,并为优化工艺参数提供了一种易于获取的决策支持工具,从而有助于减少与叶绿相关的疫情相关的公共卫生负担。
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引用次数: 0
Strategies to Manage Salmonella in Meat, Egg, and Dairy Processing Plants 管理肉、蛋和奶制品加工厂沙门氏菌的策略。
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2026-01-28 DOI: 10.1016/j.jfp.2026.100708
Diana Marcu , Igori Balta , Michael Harvey , David McCleery , Adela Marcu , Tiberiu Iancu , Ioan Pet , Ana-Maria Imbrea , Florica Morariu , Lavinia Stef , Nicolae Corcionivoschi
Effective Salmonella control in food processing depends on strict sanitation, disciplined hygiene, environmental monitoring, and strong management systems. In meat, egg, and dairy processing, Salmonella can enter through raw materials, animals, and equipment, and survive in hard-to-clean areas, forming resilient biofilms—even in dry environments. Control strategies include multiple cleaning steps, validated disinfectants, proper equipment design, environmental testing, and zone separation. In eggs and dairy, farm-level measures and rapid refrigeration are essential, while pasteurization is highly effective for milk. Innovations such as phage biocontrol, advanced sanitizers, and physical treatments are being adopted, but outbreaks often result from management lapses or postprocess recontamination rather than technical limitations. Close integration of measures from farm to processing, rigorous monitoring, and a robust food safety culture are crucial for maintaining long-term reduction of Salmonella risk. Effective management practices in food processing facilities significantly influence Salmonella prevalence, thereby directly protecting public health. The evidence reviewed shows European industries, guided by zero-tolerance standards and farm-to-fork programs, have achieved substantial reductions in Salmonella over the past two decades, and ongoing vigilance at the processing stage remains crucial to maintaining these improvements. In the United States, the implementation of FSMA’s preventive controls and continuous performance standards similarly highlights that preventing contamination in the plant is far more effective than responding to outbreaks after they occur.
食品加工过程中沙门氏菌的有效控制依赖于严格的卫生、严格的个人卫生、环境监测和强有力的管理系统。在肉、蛋和奶制品加工过程中,沙门氏菌可以通过原材料、动物和设备进入,在难以清洁的地方存活,形成有弹性的生物膜——即使在干燥的环境中也是如此。控制策略包括多个清洁步骤,经过验证的消毒剂,适当的设备设计,环境测试和区域隔离。在鸡蛋和奶制品中,农场层面的措施和快速冷藏是必不可少的,而巴氏消毒对牛奶非常有效。目前正在采用噬菌体生物防治、先进的杀菌剂和物理治疗等创新措施,但疫情往往是由于管理失误或处理后再污染造成的,而不是技术限制。从农场到加工的各项措施的紧密结合、严格的监测和健全的食品安全文化对于保持沙门氏菌风险的长期降低至关重要。食品加工设施的有效管理措施显著影响沙门氏菌的流行,从而直接保护公众健康。审查的证据表明,在零容忍标准和从农场到餐桌计划的指导下,欧洲工业在过去二十年中已经实现了沙门氏菌的大幅减少,并且在加工阶段保持警惕仍然是保持这些改进的关键。在美国,FSMA的预防性控制和持续绩效标准的实施同样强调,在工厂中预防污染远比在疫情发生后作出反应有效得多。
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引用次数: 0
Validating the Willing–Ready–Able (WRA) Framework to Measure Food Safety Engagement Among FSMA-Exempt Produce Growers in West Virginia 验证在西弗吉尼亚州fsma豁免农产品种植者中衡量食品安全参与的意愿-准备-可(WRA)框架。
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2026-01-21 DOI: 10.1016/j.jfp.2026.100704
Jesica Temple , Jessica M. Blythe , Tim Boltz , John N. Twist , Ryan Hansen , Aaron J. Giorgi , Christopher M. Ashwell , Cangliang Shen
Building on an earlier pilot classification study, the present study uses a fully independent statewide sample to psychometrically validate the Willing–Ready–Able (WRA) framework and to test behavioral separation across readiness stages. Many small-scale produce farms in West Virginia are exempt from the Food Safety Modernization Act (FSMA) Produce Safety Rule (PSR), yet voluntary adoption of Good Agricultural Practices (GAP) remains inconsistent due to the absence of a standardized engagement measure. The WRA framework is a behavioral readiness model that classifies FSMA-exempt growers by engagement in postharvest food safety practices. A statewide, cross-sectional survey was administered between July and August 2025 to FSMA-exempt produce growers recruited at farmers’ markets across all six West Virginia Department of Agriculture regions. Of 130 growers approached, five declined to participate, yielding 125 completed responses (96% response rate). The questionnaire assessed three behavioral constructs—confidence, perceived importance, and willingness—toward seven GAP-aligned postharvest practices. Construct validity and internal consistency were evaluated using exploratory factor analysis and Cronbach’s α (0.81–0.88). All constructs showed strong reliability and clear single-factor solutions. Group-level differences across WRA classifications were tested using multivariate analysis of variance (MANOVA), confirming significant overall effects (Wilks’ Λ, p < 0.01). Univariate tests indicated significant differences for confidence (p < 0.01), willingness (p < 0.001), and importance (p < 0.001), with construct scores increasing stepwise across groups (Willing < Ready < Able). These findings validate WRA as a reliable diagnostic for assessing behavioral readiness among FSMA-exempt growers. The framework provides a practical mechanism for tailoring outreach strategies—building confidence among the Willing, reducing barriers for the Ready, and leveraging the Able as peer mentors—to strengthen voluntary food safety adoption and guide efficient resource allocation.
在早期的试点分类研究的基础上,本研究使用了一个完全独立的全州样本,从心理计量学上验证了意愿-准备-能力(WRA)框架,并测试了准备阶段的行为分离。西弗吉尼亚州的许多小型农产品农场不受《食品安全现代化法案》(FSMA)《农产品安全规则》(PSR)的约束,但由于缺乏标准化的参与措施,自愿采用良好农业规范(GAP)仍然不一致。WRA框架是一个行为准备模型,通过参与收获后食品安全实践对fsma豁免种植者进行分类。在2025年7月至8月期间,对西弗吉尼亚州农业部所有六个地区的农贸市场招募的fsma豁免农产品种植者进行了全州范围的横断面调查。在接触的130个种植者中,有5个拒绝参与,有125个完成回复(96%的回复率)。问卷评估了三种行为结构——信心、感知重要性和意愿——对七个与gap一致的收获后实践。采用探索性因子分析和Cronbach’s α(0.81-0.88)评价结构效度和内部一致性。所有构念均显示出较强的可靠性和明确的单因素解决方案。使用多变量方差分析(MANOVA)检验WRA分类的组水平差异,证实了显著的总体效应(Wilks' Λ, p < 0.01)。单变量检验显示,置信度(p < 0.01)、意愿(p < 0.001)和重要性(p < 0.001)有显著差异,各组建构得分逐步增加(Willing < Ready < Able)。这些发现验证了WRA作为评估fsma豁免种植者行为准备程度的可靠诊断。该框架提供了一种切实可行的机制,用于调整外联战略——在“有意愿者”之间建立信心,减少“有意愿者”的障碍,并利用“有能力者”作为同伴导师——以加强自愿食品安全采用,并指导有效的资源分配。
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引用次数: 0
A Machine Learning Approach to Deciphering the Genomic Basis of Host Specificity and Geographic Origin in Salmonella Kentucky 一种机器学习方法来破译宿主特异性和肯塔基沙门氏菌地理起源的基因组基础。
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2026-01-21 DOI: 10.1016/j.jfp.2026.100706
Lauren M. McAllister, Seon Woo Kim, Jo Ann Van Kessel, Bradd J. Haley
In the U.S., Salmonella Kentucky is frequently isolated from food animals, but human cases are often linked to international travel. The objectives of this study were to utilize machine learning models to predict the animal hosts (bovine or poultry) and geographic origin (North America or not North America) of S. Kentucky isolates, and to identify the genomic features associated with host specificity. Core-genome single nucleotide polymorphisms (SNPs), gene presence, and intergenic regions were used to train multiple machine learning algorithms, and the highest−performing models were XGBoost trained on core-genome SNPs. The top models accurately predicted animal host (F1 scores: 0.943 poultry, 0.891 bovine) and geographic origin (F1 scores: 0.981 North America, 0.982 not North America). Analyses of feature importance identified SNPs and genes that likely contribute to host specificity. In bovine-associated lineages, top features included SNPs or gene variants linked to drug efflux and pathogenesis in ST152, and the virulence factor rhuM in ST198. In poultry-associated lineages, many of the top features were plasmids or other mobile genetic elements, some of which carried resistance genes, as well as proteins with unknown function. When applied to U.S. human clinical isolates, the models predicted that the most prevalent sequence type, ST198, was primarily acquired from poultry outside North America (76.6%), whereas ST152 was mainly acquired from domestic poultry (92.4%). A notable number of U.S. human clinical cases, as well as some produce isolates and surface water isolates, were predicted to originate from bovine sources. These findings demonstrate that machine learning models using core-genome SNPs are highly effective for differentiating animal hosts of S. Kentucky isolates. These tools facilitate the study of foodborne pathogen ecology and help identify host-associated genomic features, which serve as potential targets for mitigation strategies in food animals.
在美国,肯塔基沙门氏菌经常从食用动物中分离出来,但人类病例通常与国际旅行有关。本研究的目的是利用机器学习模型来预测肯塔基链球菌分离物的动物宿主(牛或家禽)和地理来源(北美或非北美),并确定与宿主特异性相关的基因组特征。使用核心基因组单核苷酸多态性(snp)、基因存在和基因间区域来训练多个机器学习算法,其中表现最好的模型是XGBoost对核心基因组snp进行训练。最优模型准确预测了动物宿主(F1得分:0.943家禽,0.891牛)和地理来源(F1得分:0.981北美,0.982非北美)。对特征重要性的分析确定了可能对宿主特异性有贡献的snp和基因。在牛相关谱系中,主要特征包括ST152中与药物外排和发病机制相关的snp或基因变异,以及ST198中与毒力因子rhm相关的snp或基因变异。在家禽相关谱系中,许多最重要的特征是质粒或其他可移动的遗传元件,其中一些携带抗性基因,以及功能未知的蛋白质。当应用于美国人类临床分离株时,该模型预测最流行的序列类型ST198主要来自北美以外的家禽(76.6%),而ST152主要来自家禽(92.4%)。据预测,相当数量的美国人类临床病例,以及一些农产品分离株和地表水分离株都来自牛源。这些发现表明,使用核心基因组snp的机器学习模型对区分肯塔基链球菌分离物的动物宿主非常有效。这些工具促进了食源性病原体生态学的研究,并有助于确定宿主相关的基因组特征,这些特征可作为食用动物缓解策略的潜在目标。
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引用次数: 0
Comparative Efficacy of Hand Wash Lather Times of 5 to 20 Seconds vs. Alcohol-Based Hand Sanitizer Application Approaches by an In Vivo Cross-Contamination Test Method 用体内交叉污染试验方法比较5至20秒的洗手泡沫与酒精类洗手液使用方法的效果。
IF 2.8 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2026-01-06 DOI: 10.1016/j.jfp.2026.100698
James W. Arbogast , Cade Comstock , Christopher M. Beausoleil , David A. Buckley , Steven A. Lyon , James Marsden , Donald W. Schaffner
Hand hygiene is fundamental in reducing foodborne illness risk, yet current guidance in the U.S. Food and Drug Administration (FDA) Food Code may not fully reflect evidence on product performance or realistic foodservice practices. This study evaluated the in vivo effectiveness of a commercially available nonantibacterial foaming hand wash and an alcohol-based hand sanitizer (ABHS) in reducing bacterial load on hands and transfer to food. Twelve subjects were tested using ASTM E2784 with Escherichia coli (ATCC #10536) as the challenge organism. All subjects used a consistent, standardized technique for each condition. Hand wash was assessed at 5-, 15-, and 20-s lather durations, while ABHS was tested at one dose and with two doses and paper towel use (“SaniOnce”). Mean log10 reductions on hands and bacterial transfer to melon balls were measured. Hand wash always produced substantial reductions, with no significant differences (p > 0.05): mean log reductions were 2.95, 2.86, and 3.00, with corresponding mean transfers of 4.85, 4.76, and 4.64 for 5-, 15-, and 20-s, respectively. ABHS interventions demonstrated superior efficacy (p ≤ 0.05). A single ABHS dose achieved a mean log reduction of 4.06 with transfer of 2.58, while SaniOnce yielded the greatest effect (4.99 reduction, 1.88 transfer). Results suggest that well-formulated hand washes can be effective even at shorter lathering durations, and ABHS provides greater antibacterial efficacy on lightly soiled hands. These findings support modernizing the FDA Food Code guidance to allow situational use of ABHS independently in foodservice settings and to allow shorter wash times when good handwashing technique is practiced.
手卫生是降低食源性疾病风险的基础,但目前美国食品和药物管理局(FDA)食品法典的指导可能无法完全反映产品性能或现实餐饮服务实践的证据。本研究评估了市售的非抗菌泡沫洗手液和酒精基洗手液(ABHS)在减少手上细菌负荷和转移到食物上的体内有效性。使用ASTM E2784对12名受试者进行测试,并以大肠杆菌(ATCC #10536)作为挑战菌。所有受试者在每种情况下都使用一致的标准化技术。在5、15和20秒的泡沫持续时间下评估洗手,而在一次剂量和两次剂量下测试ABHS并使用纸巾(“SaniOnce”)。测量了手部和细菌转移到甜瓜球上的平均log10减少量。洗手总是产生大量的减少,没有显著差异(p>0.05):平均对数减少为2.95、2.86和3.00,相应的5、15和20秒的平均转移分别为4.85、4.76和4.64。ABHS干预效果显著(p≤0.05)。单次ABHS剂量的平均对数减少4.06,转移2.58,而SaniOnce的效果最大(减少4.99,转移1.88)。结果表明,配方良好的洗手液即使在较短的泡沫持续时间内也能有效,而ABHS对轻脏的手有更大的抗菌效果。这些发现支持了FDA食品法规指南的现代化,允许在餐饮服务环境中独立使用ABHS,并允许在实践良好的洗手技术时缩短洗手时间。
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引用次数: 0
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Journal of food protection
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