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Coupling between γ-irradiation and synchrotron-radiation-based XAFS techniques for studying Mn-doped ZnO nanoparticles. γ-辐照和基于同步辐射的 XAFS 技术耦合用于研究掺锰氧化锌纳米粒子。
IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-09-01 Epub Date: 2022-07-15 DOI: 10.1107/S1600577522006439
N G Imam, Messaoud Harfouche, A A Azab, S Solyman

γ-Irradiation and synchrotron-radiation-based X-ray absorption fine-structure (XAFS) spectroscopy have been used to induce structure disorder through the interaction of γ-rays (200 kGy) with fabricated Mn-doped ZnO nanoparticles (NPs) and then to examine thoroughly the resultant structural change. The extracted electronic/fine XAFS structural parameters reflect a compositional and γ-irradiation co-dependence. The average crystal structure of samples prepared by the sol-gel method was investigated by X-ray diffraction (XRD). A detailed structural XRD data analysis was carried out by applying a Rietveld refinement using the MAUD program. XAFS spectra were collected at the Zn K-edge (9659 eV) in transmission mode and at the Mn K-edge (6539 eV) in fluorescence mode. Direct evidence of the solubility of Mn ions in the ZnO structure was demonstrated by fitting the extended-XAFS (EXAFS) signal. Near-edge XAFS (XANES) analysis provided the oxidation states of Zn and Mn ions through fingerprint XANES spectra of the sample along with those of standard compounds. Linear combination fitting showed that the most fit chemical forms of Zn and Mn in the samples are ZnO and MnO, respectively. The oxidation states of both Zn and Mn XAFS absorbers were confirmed from pre-edge fitting. The results of the magnetic measurements were explained in light of the average and electronic/local structural information obtained from XRD, XANES and EXAFS techniques. The magnetic properties of the samples translate into an induced change in the average crystal and electronic/local structures upon Mn concentration change and γ-irradiation. XRD confirmed the successful preparation of hexagonal Mn-doped ZnO NPs with a crystallite size in the range 33-41 nm. Both XRD and EXAFS analysis detected a minor amount of Mn3O4 as a secondary phase. XANES and EXAFS provided information exploring the outstanding potential of the utilized protocol for detecting precisely the presence of the secondary phase of Mn3O4, which changes with Mn content (x). Mean-square relative displacement (σ2) values extracted from the EXAFS fitting were found to grow for Zn-Zn/Mn paths demonstrating the substitution of Mn/Zn into Zn crystal sites. The EXAFS analysis explains the reasons behind the enhancement in the magnetic properties and shows that the Mn doping content at x = 0.05 produces the most local atomic disorder in ZnO NPs. There is a strong harmony among the XRD, XANES, EXAFS and magnetization behavior of the Mn-doped ZnO NPs. Maximum magnetization was acquired at an Mn content of 0.05. γ-Ray-irradiated Zn1-xMnxO NPs are recommended as optimized candidates for showing the diversity of the applications.

通过γ射线(200 kGy)与制备的掺锰氧化锌纳米粒子(NPs)的相互作用,利用γ-辐照和基于同步辐射的X射线吸收精细结构(XAFS)光谱诱导结构紊乱,然后深入研究由此产生的结构变化。提取的电子/精细 XAFS 结构参数反映了成分和γ-辐照的共同依赖性。通过 X 射线衍射 (XRD) 研究了溶胶-凝胶法制备的样品的平均晶体结构。通过使用 MAUD 程序进行里特维尔德细化,对 XRD 数据进行了详细的结构分析。在透射模式下,收集了锌 K 边(9659 eV)的 XAFS 光谱,在荧光模式下,收集了锰 K 边(6539 eV)的 XAFS 光谱。通过拟合扩展 XAFS(EXAFS)信号,直接证明了锰离子在氧化锌结构中的溶解性。近边 XAFS(XANES)分析通过样品的指纹 XANES 光谱和标准化合物的指纹 XANES 光谱提供了锌和锰离子的氧化态。线性组合拟合结果表明,样品中最适合的锌和锰化学形态分别是氧化锌和氧化锰。通过前沿拟合确认了锌和锰 XAFS 吸收体的氧化态。根据 XRD、XANES 和 EXAFS 技术获得的平均和电子/局部结构信息解释了磁性测量结果。样品的磁性能转化为锰浓度变化和 γ 辐照时平均晶体和电子/局部结构的诱导变化。XRD 证实成功制备了结晶尺寸在 33-41 nm 范围内的六方掺锰 ZnO NPs。XRD 和 EXAFS 分析均检测到少量 Mn3O4 作为第二相。XANES 和 EXAFS 提供的信息探索了所使用的方案在精确检测 Mn3O4 次生相存在方面的巨大潜力,Mn3O4 次生相随锰含量 (x) 的变化而变化。从 EXAFS 拟合中提取的均方相对位移 (σ2)值发现,Zn-Zn/Mn 路径的均方相对位移值在增加,这表明 Mn/Zn 被置换到 Zn 晶体位点。EXAFS 分析解释了磁性增强背后的原因,并表明锰掺杂含量在 x = 0.05 时会在氧化锌氮氧化物中产生最多的局部原子无序。掺杂锰的氧化锌氮氧化物的 XRD、XANES、EXAFS 和磁化行为之间有很强的协调性。锰含量为 0.05 时磁化率最大。建议将经过γ射线辐照的 Zn1-xMnxO NPs 作为最佳候选材料,以展示其应用的多样性。
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引用次数: 0
Study of X-ray topography using the super-Borrmann effect. 利用超玻尔曼效应研究x射线形貌。
IF 2.5 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-09-01 Epub Date: 2022-08-17 DOI: 10.1107/S1600577522007779
J Matsui, K Takatsu, Y Tsusaka

X-ray topography exerting the super-Borrmann effect has been performed using synchrotron radiation to display dislocation images with a high-speed and high-resolution CMOS camera. Forward-transmitted X-rays are positively employed instead of reflected X-rays to reveal dislocations in relatively thick crystals by simultaneously exciting a pair of adjacent {111} planes owing to the super-Borrmann effect. Before the experiment, minimum values of the attenuation coefficients AminP for σ and π polarizations of the incident X-rays in the three-beam case are calculated. Results demonstrate that AminP for both polarizations are almost 20 times larger than those in the two-beam (usual Borrmann effect) case. The transmitted X-rays can be used to confirm the efficacy of taking topographs under the super-Borrmann conditions, as well as under multiple-diffraction conditions. Furthermore, super-Borrmann topographs can be considered for relatively thick crystals, where a conventional Lang X-ray topography technique is difficult to apply.

利用同步辐射,利用高速高分辨率CMOS相机,利用超博尔曼效应进行了位错图像的x射线形貌研究。由于超博尔曼效应,正透射x射线代替反射x射线,通过同时激发一对相邻的{111}平面来揭示相对厚的晶体中的位错。实验前,计算了三束入射x射线的σ偏振和π偏振的衰减系数AminP的最小值。结果表明,两种偏振下的氨磷比双光束(通常的博尔曼效应)下的氨磷大近20倍。透射x射线可以用来证实在超borrmann条件下以及在多重衍射条件下拍摄地形的有效性。此外,对于相对较厚的晶体,可以考虑采用超borrmann形貌,而传统的Lang x射线形貌技术难以应用。
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引用次数: 0
Shear displacement gradient in X-ray Bragg coherent diffractive imaging. x射线Bragg相干衍射成像中的剪切位移梯度
IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-05-01 Epub Date: 2022-04-05 DOI: 10.1107/S1600577522002363
Oleg Gorobtsov, Andrej Singer

Bragg coherent X-ray diffractive imaging is a cutting-edge method for recovering three-dimensional crystal structure with nanoscale resolution. Phase retrieval provides an atomic displacement parallel to the Bragg peak reciprocal lattice vector. The derivative of the displacement along the same vector provides the normal strain field, which typically serves as a proxy for any structural changes. In this communication it is found that the other component of the displacement gradient, perpendicular to the reciprocal lattice vector, provides additional information from the experimental data collected from nanocrystals with mobile dislocations. Demonstration on published experimental data show how the perpendicular component of the displacement gradient adds to existing analysis, enabling an estimate for the external stresses, pinpointing the location of surface dislocations, and predicting the dislocation motion in in situ experiments.

实验数据用于通过布拉格相干衍射成像检索到的原子位移梯度的垂直分量来提取关于外部应力和表面位错的附加信息。
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引用次数: 0
Mamba: a systematic software solution for beamline experiments at HEPS. Mamba:HEPS光束线实验的系统软件解决方案
IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-05-01 Epub Date: 2022-04-05 DOI: 10.1107/S1600577522002697
Yu Liu, Yan Da Geng, Xiao Xue Bi, Xiang Li, Ye Tao, Jian She Cao, Yu Hui Dong, Yi Zhang

To cater for the diverse experiment requirements at the High Energy Photon Source (HEPS) with often limited human resources, Bluesky was chosen as the basis for our software framework, Mamba. In our attempt to address Bluesky's lack of integrated graphical user interfaces (GUIs), command injection with feedback was chosen as the main way for the GUIs to cooperate with the command line interface; a remote-procedure-call service is also provided, which covers functionalities unsuitable for command injection, as well as pushing of status updates. In order to fully support high-frequency applications like fly scans, Bluesky's support for asynchronous control is being improved; furthermore, to support high-throughput experiments, Mamba Data Worker is being developed to cover the complexity in asynchronous online data processing for these experiments. To systematically simplify the specification of metadata, scan parameters and data-processing graphs for each type of experiment, an experiment parameter generator will be developed; experiment-specific modules to automate preparation steps will also be made. The integration of off-the-shelf code in Mamba for domain-specific needs is under investigation, and Mamba GUI Studio is being developed to simplify the implementation and integration of GUIs.

Mamba是一个基于蓝天的实验控制框架,正在为高能光子源(HEPS)开发;它的前端和后端通过远程过程调用服务进行协作,最重要的是,通过命令注入进行协作。Bluesky对高频和高通量应用程序的支持正在改进中,Mamba Data Worker是一个关键组件。还讨论了其他计划,包括实验参数生成器和Mamba GUI Studio。
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引用次数: 0
Ring artifact and Poisson noise attenuation via volumetric multiscale nonlocal collaborative filtering of spatially correlated noise. 基于空间相关噪声体积多尺度非局部协同滤波的环伪影和泊松噪声衰减
IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-05-01 Epub Date: 2022-04-21 DOI: 10.1107/S1600577522002739
Ymir Mäkinen, Stefano Marchesini, Alessandro Foi

X-ray micro-tomography systems often suffer from high levels of noise. In particular, severe ring artifacts are common in reconstructed images, caused by defects in the detector, calibration errors, and fluctuations producing streak noise in the raw sinogram data. Furthermore, the projections commonly contain high levels of Poissonian noise arising from the photon-counting detector. This work presents a 3-D multiscale framework for streak attenuation through a purposely designed collaborative filtering of correlated noise in volumetric data. A distinct multiscale denoising step for attenuation of the Poissonian noise is further proposed. By utilizing the volumetric structure of the projection data, the proposed fully automatic procedure offers improved feature preservation compared with 2-D denoising and avoids artifacts which arise from individual filtering of sinograms.

使用新的两阶段多尺度体积滤波框架衰减层析成像数据中的条纹和泊松噪声,其中退化被建模为相关噪声。该程序是全自动的,提供了改进的特征保存,并且可以进一步与规则化重建相结合,以提供最先进的成像质量。
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引用次数: 0
Single-exposure X-ray phase imaging microscopy with a grating interferometer. 光栅干涉仪单曝光X射线相位成像显微镜
IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-05-01 Epub Date: 2022-03-15 DOI: 10.1107/S160057752200193X
Andreas Wolf, Bernhard Akstaller, Silvia Cipiccia, Silja Flenner, Johannes Hagemann, Veronika Ludwig, Pascal Meyer, Andreas Schropp, Max Schuster, Maria Seifert, Mareike Weule, Thilo Michel, Gisela Anton, Stefan Funk

The advent of hard X-ray free-electron lasers enables nanoscopic X-ray imaging with sub-picosecond temporal resolution. X-ray grating interferometry offers a phase-sensitive full-field imaging technique where the phase retrieval can be carried out from a single exposure alone. Thus, the method is attractive for imaging applications at X-ray free-electron lasers where intrinsic pulse-to-pulse fluctuations pose a major challenge. In this work, the single-exposure phase imaging capabilities of grating interferometry are characterized by an implementation at the I13-1 beamline of Diamond Light Source (Oxfordshire, UK). For comparison purposes, propagation-based phase contrast imaging was also performed at the same instrument. The characterization is carried out in terms of the quantitativeness and the contrast-to-noise ratio of the phase reconstructions as well as via the achievable spatial resolution. By using a statistical image reconstruction scheme, previous limitations of grating interferometry regarding the spatial resolution can be mitigated as well as the experimental applicability of the technique.

这项工作提出并扩展了x射线光栅干涉术的单曝光相位成像能力,如在钻石光源的光束线I13-1上的实现所证明的那样。这一结果对未来x射线自由电子激光器的单脉冲成像实验具有重要意义。
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引用次数: 0
Parameter estimation for X-ray scattering analysis with Hamiltonian Markov Chain Monte Carlo. X射线散射分析的哈密顿马尔可夫链蒙特卡罗参数估计
IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-05-01 Epub Date: 2022-04-22 DOI: 10.1107/S1600577522003034
Zhang Jiang, Jin Wang, Matthew V Tirrell, Juan J de Pablo, Wei Chen

Bayesian-inference-based approaches, in particular the random-walk Markov Chain Monte Carlo (MCMC) method, have received much attention recently for X-ray scattering analysis. Hamiltonian MCMC, a state-of-the-art development in the field of MCMC, has become popular in recent years. It utilizes Hamiltonian dynamics for indirect but much more efficient drawings of the model parameters. We described the principle of the Hamiltonian MCMC for inversion problems in X-ray scattering analysis by estimating high-dimensional models for several motivating scenarios in small-angle X-ray scattering, reflectivity, and X-ray fluorescence holography. Hamiltonian MCMC with appropriate preconditioning can deliver superior performance over the random-walk MCMC, and thus can be used as an efficient tool for the statistical analysis of the parameter distributions, as well as model predictions and confidence analysis.

用哈密顿马尔可夫链蒙特卡罗方法分析X射线散射数据。
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引用次数: 0
Sub-micrometer focusing setup for high-pressure crystallography at the Extreme Conditions beamline at PETRA III. PETRA极端条件光束线高压晶体学的亚微米聚焦装置 三、
IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-05-01 Epub Date: 2022-04-04 DOI: 10.1107/S1600577522002582
K Glazyrin, S Khandarkhaeva, T Fedotenko, W Dong, D Laniel, F Seiboth, A Schropp, J Garrevoet, D Brückner, G Falkenberg, A Kubec, C David, M Wendt, S Wenz, L Dubrovinsky, N Dubrovinskaia, H P Liermann

Scientific tasks aimed at decoding and characterizing complex systems and processes at high pressures set new challenges for modern X-ray diffraction instrumentation in terms of X-ray flux, focal spot size and sample positioning. Presented here are new developments at the Extreme Conditions beamline (P02.2, PETRA III, DESY, Germany) that enable considerable improvements in data collection at very high pressures and small scattering volumes. In particular, the focusing of the X-ray beam to the sub-micrometer level is described, and control of the aberrations of the focusing compound refractive lenses is made possible with the implementation of a correcting phase plate. This device provides a significant enhancement of the signal-to-noise ratio by conditioning the beam shape profile at the focal spot. A new sample alignment system with a small sphere of confusion enables single-crystal data collection from grains of micrometer to sub-micrometer dimensions subjected to pressures as high as 200 GPa. The combination of the technical development of the optical path and the sample alignment system contributes to research and gives benefits on various levels, including rapid and accurate diffraction mapping of samples with sub-micrometer resolution at multimegabar pressures.

面对承受数百万巴压力的微小样品的X射线衍射的挑战,仪器的发展使从微米到亚微米尺寸的晶粒的单晶数据收集成为可能。这些发展是基于亚微米光束能力,采用与相位校正板和精确机动化解决方案一起工作的复合折射透镜。
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引用次数: 0
Dose-efficient multimodal microscopy of human tissue at a hard X-ray nanoprobe beamline. 硬X射线纳米探针光束线下人体组织的剂量有效多模式显微镜
IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-05-01 Epub Date: 2022-03-16 DOI: 10.1107/S1600577522001874
Simone Sala, Yuhe Zhang, Nathaly De La Rosa, Till Dreier, Maik Kahnt, Max Langer, Lars B Dahlin, Martin Bech, Pablo Villanueva-Perez, Sebastian Kalbfleisch

X-ray fluorescence microscopy performed at nanofocusing synchrotron beamlines produces quantitative elemental distribution maps at unprecedented resolution (down to a few tens of nanometres), at the expense of relatively long measuring times and high absorbed doses. In this work, a method was implemented in which fast low-dose in-line holography was used to produce quantitative electron density maps at the mesoscale prior to nanoscale X-ray fluorescence acquisition. These maps ensure more efficient fluorescence scans and the reduction of the total absorbed dose, often relevant for radiation-sensitive (e.g. biological) samples. This multimodal microscopy approach was demonstrated on human sural nerve tissue. The two imaging modes provide complementary information at a comparable resolution, ultimately limited by the focal spot size. The experimental setup presented allows the user to swap between them in a flexible and reproducible fashion, as well as to easily adapt the scanning parameters during an experiment to fine-tune resolution and field of view.

这项工作介绍了在同一实验装置中,在硬X射线纳米聚焦光束线上实现高分辨率X射线在线全息术和X射线荧光显微镜的组合。在线全息术通过恢复电子密度图提供形态信息,即使在弱散射或低对比度样本上也是如此;X射线荧光通过生成元素特异性质量密度图来提供互补的化学信息。
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引用次数: 0
ID23-2: an automated and high-performance microfocus beamline for macromolecular crystallography at the ESRF. Corrigendum. ID23-2:用于ESRF大分子晶体学的自动化高性能微聚焦束线。勘误表
IF 2.4 3区 物理与天体物理 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2022-05-01 Epub Date: 2022-03-14 DOI: 10.1107/S1600577522002818
Max Nanao, Shibom Basu, Ulrich Zander, Thierry Giraud, John Surr, Matias Guijarro, Mario Lentini, Franck Felisaz, Jeremy Sinoir, Christian Morawe, Amparo Vivo, Antonia Beteva, Marcus Oscarsson, Hugo Caserotto, Fabien Dobias, David Flot, Didier Nurizzo, Jonathan Gigmes, Nicolas Foos, Ralf Siebrecht, Thomas Roth, Pascal Theveneau, Olof Svensson, Gergely Papp, Bernard Lavault, Florent Cipriani, Ray Barrett, Carole Clavel, Gordon Leonard

A revised version of Table 2 of Nanao et al. [J. Synchrotron Rad. (2022). 29, 581-590] is provided.

报道了Nanao等人[J.Synchrotron Rad.(2022).29581–590]对表2的修正。
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引用次数: 0
期刊
Journal of Synchrotron Radiation
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