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Association of single nucleotide polymorphisms rs7459185 of the HSPβ1 gene and the risk of hematological toxicity in lung cancer.
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-23 DOI: 10.1016/j.lungcan.2025.108103
Óscar Muñoz Muñoz, Blas David Delgado León, Elías Gomis Sellés, María Valle Enguix-Riego, Jon Cacicedo Fernández de Bobadilla, Juan Manuel Praena-Fernández, Eleonor Rivin Del Campo, José Luis López Guerra

Purpose: Hematological toxicities (HTs) in lung cancer (LCa) may compromise the delivery of Radio-Chemotherapy (RTCT), and consequently affect the control of the disease. The aim of this study is to evaluate the association of Single nucleotide polymorphisms (SNPs) with HT.

Material/methods: In this prospective multicentre study, 264 patients with primary LCa treated with RTCT between 2012 and 2018 were included. Genotyping analysis was performed on DNA isolated from peripheral blood samples by real-time polymerase chain reaction (PCR) using TaqMan. HTs were scored using the Common Toxicity Criteria (CTCAE) version 5.0.

Results: An increased risk of HT ≥ grade 2 was observed in patients with the GG genotype of the SNP rs7459185 (HSPβ1) with a hazard ratio (HR) of 1.462 (95 %CI 1.054-2.029, p = 0.007). Similarly, those patients had an increased risk of overall HT ≥ grade 3 with a HR of 1.531 (95 %CI 1.016-2.30, p = 0.007). The patients with the GG genotype experienced an acute lymphopenia ≥ Grade 3 (HR 1.590 [95 %CI 1.004-2.517; p 0.045]) and acute anemia ≥ Grade 2 (HR 1.886 [95 %CI 1.060-3.356; p 0.032]), compared to the GC/CC genotypes.

Conclusion: Our findings show a relationship between the functional GG genotypic of the SNP rs7459185 (HSPβ1) and heightened risk the development of HT, including anemia and lymphopenia in patients with LCa. This genetic variant could be utilized as a predictive marker to tailor treatment intensity, contributing to the advancement of individualized therapeutic approaches.

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引用次数: 0
Clinical utility of comprehensive genomic profiling in non-small cell lung cancer: An analysis of a nation-wide database.
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-18 DOI: 10.1016/j.lungcan.2025.108099
Koki Fujii, Michiko Ueki, Momoko Morishita, Hiroaki Ikushima, Hideaki Isago, Kousuke Watanabe, Katsutoshi Oda, Hidenori Kage

Background: Molecular testing is recommended to patients with advanced non-small cell lung cancer (NSCLC) because those who receive targeted therapy have better prognosis than patients who don't. However, recent studies have raised concerns that first-line companion diagnostic testing at diagnosis may have lower detection rates than previously reported. Therefore, we sought to determine the utility of comprehensive genomic profiling (CGP) tests in NSCLC by analyzing a nation-wide database.

Methods: We searched the Center for Cancer Genomics and Advanced Therapeutics database and downloaded clinical and genomic data from 3,240 lung cancer cases registered from June 2019 to August 2023. Patients undergoing tissue tests and plasma tests were analyzed separately. NSCLC with previously known driver mutations and those without were further analyzed separately. All 3,240 lung cancer patients were analyzed for the presence of germline findings.

Results: We found that 25 % of patients who had negative companion diagnostic results tested positive for driver oncogene mutations with indications for approved inhibitors when they underwent tissue CGP tests. Tissue CGP tests had lower detection rates for gene fusions compared with gene mutations (93 % for mutations and 73 % for fusions, p < 0.001), and plasma CGP tests had lower detection rates for both mutations and fusions compared with tissue testing (69 % for mutations and 37 % for fusions, p < 0.001). Finally, presumed germline pathogenic variants were detected in 3.9-5.3 % of NSCLC patients.

Conclusion: NSCLC patients who tested negative for companion diagnostic tests benefited from CGP tests, especially with tissue-based panels. CGP tests detect germline findings in NSCLC patients at rates similar to previous reports.

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引用次数: 0
Rearranged during transfection (RET) lung cancer - Update on targeted therapies. 转染(RET)肺癌中的重排-靶向治疗的最新进展。
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-17 DOI: 10.1016/j.lungcan.2025.108083
W J Mullally, C G O'Leary, K J O'Byrne

The enhanced comprehension of the molecular pathways underpinning oncogenesis in non-small cell lung cancer (NSCLC) has led to the advancement of personalized treatment for individuals with actionable mutations using targeted therapies. The rearranged during transfection (RET) proto-oncogene, is critical in the embryonic development of various tissues, including renal, neural, and neuroendocrine tissue. RET fusions have been observed in approximately 1-2% of NSCLC cases. Targeted therapies for NSCLC with RET alterations have progressed significantly over the past decade. While multikinase inhibitors (MKIs) faced limitations in efficacy and tolerability, the introduction of selective RET inhibitors (SRIs) such as selpercatininb and pralsetinib has transformed patient outcomes, resulting in deep and durable responses. Ongoing clinical trials are exploring their potential benefits in the neoadjuvant and adjuvant setting. Early phase clinical trials endeavor to demonstrate next-generation selective RET inhibitors can effectively overcome SRI resistance mechanisms, offer improved safety profiles, and enhance patient outcomes.

对非小细胞肺癌(NSCLC)中肿瘤发生的分子通路的深入了解,促进了针对具有可操作突变的个体使用靶向治疗的个性化治疗的进展。转染(RET)过程中原癌基因的重排对包括肾、神经和神经内分泌组织在内的各种组织的胚胎发育至关重要。在大约1-2%的NSCLC病例中观察到RET融合。在过去的十年中,针对RET改变的非小细胞肺癌的靶向治疗取得了显著进展。虽然多激酶抑制剂(MKIs)在疗效和耐受性方面存在局限性,但选择性RET抑制剂(SRIs)如selpercatinb和pralsetinib的引入已经改变了患者的预后,产生了深刻而持久的反应。正在进行的临床试验正在探索它们在新辅助和辅助环境中的潜在益处。早期临床试验努力证明下一代选择性RET抑制剂可以有效克服SRI耐药机制,提供更好的安全性,并提高患者预后。
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引用次数: 0
Targeted therapy for older patients with an oncogene driven non-small cell lung cancer: Recommendations from a SIOG expert group. 老年癌基因驱动的非小细胞肺癌的靶向治疗:SIOG专家组的建议
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-13 DOI: 10.1016/j.lungcan.2025.108087
L Decoster, D R Camidge, J A Fletcher, A Addeo, A Greystoke, K Kantilal, L Bigay Game, R Kanesvaran, F Gomes

Lung cancer is mostly a disease of aging with approximately half of newly diagnosed patients being 70 years or older. Treatment decisions in this population pose unique challenges because of their heterogeneity with regards to daily functioning, cognition, organ function, comorbidities and polypharmacy, their underrepresentation in clinical trials and the impact of treatment on patient-centered outcomes, particularly in frail patients. The advent of targeted therapies and immunotherapy has revolutionized the management of advanced non-small cell lung cancer (NSCLC). Molecular profiling has allowed for the identification of actionable genomic alterations and targeted therapies have become standard of care for oncogene-driven NSCLC, significantly improving prognosis and quality of life. However, the data on the efficacy and tolerability of these treatments in older patients remain sparse. This review, conducted by the International Society of Geriatric Oncology (SIOG) NSCLC task force, examines the available literature on the use of targeted therapies in patients aged 70 years or older with oncogene-driven NSCLC. The task force's expert recommendations aim to guide treatment decisions for older patients with oncogene driven NSCLC.

肺癌主要是一种衰老疾病,大约一半的新诊断患者年龄在70岁或以上。这一人群的治疗决策面临着独特的挑战,因为他们在日常功能、认知、器官功能、合并症和多种药物方面存在异质性,他们在临床试验中的代表性不足,以及治疗对以患者为中心的结果的影响,特别是在虚弱的患者中。靶向治疗和免疫治疗的出现彻底改变了晚期非小细胞肺癌(NSCLC)的治疗。分子谱分析允许识别可操作的基因组改变,靶向治疗已成为癌基因驱动的非小细胞肺癌的标准治疗方法,显著改善预后和生活质量。然而,关于这些治疗在老年患者中的疗效和耐受性的数据仍然很少。本综述由国际老年肿瘤学会(SIOG) NSCLC工作组进行,研究了针对70岁及以上癌基因驱动型NSCLC患者使用靶向治疗的现有文献。工作组的专家建议旨在指导老年癌基因驱动的非小细胞肺癌患者的治疗决策。
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引用次数: 0
Validation of the 9th edition of the TNM staging system for limited-stage small cell lung cancer after Resection: A multicenter study. 第9版TNM分期系统在有限期小细胞肺癌切除术后的验证:一项多中心研究。
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-12 DOI: 10.1016/j.lungcan.2025.108085
Leilei Wu, Jia-Yuan Tian, Ming-Jun Li, Feng Jiang, Li-Hong Qiu, Wan-Jun Yu, Xiao-Lu Chen, Rang-Rang Wang, Kun Li, Guo-Wei Ma, Jian Zeng, Dong Xie

Objectives: The 9th edition of the tumor-node-metastasis (TNM) staging system for lung cancer was proposed at the 2023 World Conference on Lung Cancer in Singapore. This study aimed to externally validate and compare the latest staging of small-cell lung cancer (SCLC).

Methods: Four hundred and eight patients with limited-stage SCLC were collected after lung resection from four centers. Survival curves by TNM stages were drawn using the Kaplan-Meier method and further compared by the Log-rank test. The Cox regression, receiver operating characteristics curves, area under the curve (AUC), Akaike information criterion (AIC), Bayesian information criterion (BIC), and Concordance index (C-index) were used in this study.

Results: In comparing IA vs. IIB, IIA vs. IIB, IIA vs. IIIA, IIA vs. IIIB, and IIIA vs. IIIB, the 9th edition had a better distinguishing ability than the eighth staging system (all p < 0.05). Besides, the 9th edition TNM staging had better predictive power and accuracy for the overall survival (OS) of SCLC patients over the 8th edition (AUC of 3-year OS: 0.680 vs. o.668; AIC: 4425.25 vs. 4444.52; BIC: 4493.44 vs. 4512.71; C-index: 0.637 [0.04] vs. 0.629 [0.039], p < 0.001).

Conclusions: Our external validation demonstrates that the ninth edition of pathological TNM staging for limited-stage SCLC is reasonable and valid based on a multicenter study. The ninth edition has better prognostic accuracy than the eighth edition.

目的:第9版肺癌肿瘤-淋巴结-转移(TNM)分期系统在2023年新加坡世界肺癌大会上被提出。本研究旨在外部验证和比较小细胞肺癌(SCLC)的最新分期。方法:从4个中心收集肺切除术后的有限期SCLC患者480例。采用Kaplan-Meier法绘制TNM分期生存曲线,并进一步采用Log-rank检验进行比较。本研究采用Cox回归、受试者工作特征曲线、曲线下面积(AUC)、赤池信息准则(AIC)、贝叶斯信息准则(BIC)和一致性指数(C-index)。结果:在比较IA与IIB、IIA与IIB、IIA与IIIA、IIA与IIIB、IIIA与IIIB时,第9版比第8版具有更好的区分能力(均p)。结论:我们的外部验证表明,基于多中心研究,第9版有限期SCLC病理TNM分期是合理有效的。第九版比第八版有更好的预测准确性。
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引用次数: 0
First-line osimertinib compared to earlier generation TKIs in advanced EGFR-mutant NSCLC: A real-world survival analysis. 一线奥西替尼与早期TKIs在晚期egfr突变NSCLC中的比较:现实世界的生存分析
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-09 DOI: 10.1016/j.lungcan.2025.108084
Igor Gomez-Randulfe, Lauren A Scanlon, Mathew Carter, Laura Moliner, Emine Cil, Raffaele Califano, Yvonne Summers, Fiona Blackhall, Colin R Lindsay, Jacob Lewis, Fabio Gomes

Objectives: This study aimed to compare the overall survival (OS) of patients with advanced EGFR-mutant NSCLC treated with first-line osimertinib versus earlier-generation EGFR tyrosine kinase inhibitors (TKIs) in a real-world setting. Secondary endpoint included OS in patients with uncommon EGFR mutations. Exploratory aim focused on the impact of TKIs sequencing strategies.

Methods: We conducted a retrospective cohort study of patients diagnosed with advanced EGFR-mutant NSCLC who started first-line treatment with either osimertinib or another EGFR TKI (afatinib, erlotinib, or gefitinib) at The Christie (Manchester, UK) from January 2014 to May 2023. Data were extracted from electronic health records, and survival outcomes were analysed using Kaplan-Meier estimates and Cox proportional hazards models.

Results: We identified 119 patients treated with first-line osimertinib and 217 with other EGFR TKIs. In the whole population, median age was 69 years (IQR 59.8-77) and 67.3 % of the patients had an ECOG 0-1. With a median follow-up of 73.2 months (95 % CI 66.2-115.7) and 30.6 months (95 % CI 26.0-38.4) in the earlier-generation TKIs and the osimertinib groups, respectively, the median OS was comparable (16.6 vs 16.9 months; HR = 1, p = 0.97). Patients with uncommon EGFR mutations (n = 48; 14.3 %) had poorer survival compared to those with common mutations (HR = 1.664, p = 0.002). Amongst patients who received two treatment lines, those who received osimertinib after another TKI had a shorter OS than those who received osimertinib first-line followed by another line of therapy (HR = 2.062, p = 0.022).

Conclusion: First-line osimertinib showed comparable OS to earlier-generation EGFR TKIs for advanced EGFR-mutant NSCLC. Patients with uncommon EGFR mutations had a poorer survival. Further research is warranted to optimize treatment for patients with uncommon EGFR mutations and to explore the cost-effectiveness of different sequencing approaches.

目的:本研究旨在比较一线奥西替尼与早期EGFR酪氨酸激酶抑制剂(TKIs)治疗的晚期EGFR突变NSCLC患者的总生存期(OS)。次要终点包括罕见EGFR突变患者的OS。探索性目的集中于TKIs测序策略的影响。方法:我们对2014年1月至2023年5月在英国曼彻斯特克里斯蒂医院(The Christie)接受奥西替尼或另一种EGFR TKI(阿法替尼、厄洛替尼或吉非替尼)一线治疗的晚期EGFR突变NSCLC患者进行了一项回顾性队列研究。从电子健康记录中提取数据,并使用Kaplan-Meier估计和Cox比例风险模型分析生存结果。结果:我们确定了119例接受一线奥西替尼治疗的患者和217例接受其他EGFR TKIs治疗的患者。在整个人群中,中位年龄为69岁(IQR 59.8-77), 67.3%的患者ECOG为0-1。早期tki组和奥西替尼组的中位随访时间分别为73.2个月(95% CI 66.2-115.7)和30.6个月(95% CI 26.0-38.4),中位OS是相当的(16.6个月vs 16.9个月;HR = 1, p = 0.97)。罕见EGFR突变患者(n = 48;14.3%)的患者生存率较普通突变患者低(HR = 1.664, p = 0.002)。在接受两条治疗线的患者中,第一次TKI后接受奥西替尼治疗的患者的OS比第一次接受奥西替尼治疗后再接受另一条治疗的患者的OS短(HR = 2.062, p = 0.022)。结论:一线奥西替尼治疗晚期EGFR突变型NSCLC的OS与早期EGFR TKIs相当。具有罕见EGFR突变的患者生存率较低。需要进一步的研究来优化对罕见EGFR突变患者的治疗,并探索不同测序方法的成本效益。
{"title":"First-line osimertinib compared to earlier generation TKIs in advanced EGFR-mutant NSCLC: A real-world survival analysis.","authors":"Igor Gomez-Randulfe, Lauren A Scanlon, Mathew Carter, Laura Moliner, Emine Cil, Raffaele Califano, Yvonne Summers, Fiona Blackhall, Colin R Lindsay, Jacob Lewis, Fabio Gomes","doi":"10.1016/j.lungcan.2025.108084","DOIUrl":"https://doi.org/10.1016/j.lungcan.2025.108084","url":null,"abstract":"<p><strong>Objectives: </strong>This study aimed to compare the overall survival (OS) of patients with advanced EGFR-mutant NSCLC treated with first-line osimertinib versus earlier-generation EGFR tyrosine kinase inhibitors (TKIs) in a real-world setting. Secondary endpoint included OS in patients with uncommon EGFR mutations. Exploratory aim focused on the impact of TKIs sequencing strategies.</p><p><strong>Methods: </strong>We conducted a retrospective cohort study of patients diagnosed with advanced EGFR-mutant NSCLC who started first-line treatment with either osimertinib or another EGFR TKI (afatinib, erlotinib, or gefitinib) at The Christie (Manchester, UK) from January 2014 to May 2023. Data were extracted from electronic health records, and survival outcomes were analysed using Kaplan-Meier estimates and Cox proportional hazards models.</p><p><strong>Results: </strong>We identified 119 patients treated with first-line osimertinib and 217 with other EGFR TKIs. In the whole population, median age was 69 years (IQR 59.8-77) and 67.3 % of the patients had an ECOG 0-1. With a median follow-up of 73.2 months (95 % CI 66.2-115.7) and 30.6 months (95 % CI 26.0-38.4) in the earlier-generation TKIs and the osimertinib groups, respectively, the median OS was comparable (16.6 vs 16.9 months; HR = 1, p = 0.97). Patients with uncommon EGFR mutations (n = 48; 14.3 %) had poorer survival compared to those with common mutations (HR = 1.664, p = 0.002). Amongst patients who received two treatment lines, those who received osimertinib after another TKI had a shorter OS than those who received osimertinib first-line followed by another line of therapy (HR = 2.062, p = 0.022).</p><p><strong>Conclusion: </strong>First-line osimertinib showed comparable OS to earlier-generation EGFR TKIs for advanced EGFR-mutant NSCLC. Patients with uncommon EGFR mutations had a poorer survival. Further research is warranted to optimize treatment for patients with uncommon EGFR mutations and to explore the cost-effectiveness of different sequencing approaches.</p>","PeriodicalId":18129,"journal":{"name":"Lung Cancer","volume":"200 ","pages":"108084"},"PeriodicalIF":4.5,"publicationDate":"2025-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143008185","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Geographic variation in delay to surgical treatment among non-small cell lung cancer patients. 非小细胞肺癌患者延迟手术治疗的地理差异。
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-04 DOI: 10.1016/j.lungcan.2024.108077
Getayeneh Antehunegn Tesema, Rob G Stirling, Win Wah, Zemenu Tadesse Tessema, Stephane Heritier, Arul Earnest

Objectives: Delayed surgery is significantly associated with an increased risk of disease progression and adverse outcomes in lung cancer. Evidence is available on the variation in delayed surgical treatment among patients with Non-Small Cell Lung Cancer (NSCLC). However, the relative contribution of patient- and area-level risk factors to the geographic patterns of delayed surgery in patients with NSCLC is poorly understood. Therefore, we aimed to explore the geographic variation in delay to surgical treatment among patients with NSCLC.

Materials and methods: This study utilized data from the Victorian Lung Cancer Registry (VLCR) and the Australian Bureau of Statistics (ABS). A total of 3,088 patients with NSCLC who had undergone surgery were included. We applied a Bayesian spatial multilevel model incorporating spatially structured and unstructured random effects to examine patient and area-level risk factors associated with delays to surgical treatment. Model comparison was conducted using the Deviance Information Criterion (DIC).

Results: Over one-third (40.45 %) of NSCLC patients experienced delayed surgical treatment. Significant geographic variation in delayed surgical treatment among NSCLC patients across Local Government Areas (LGAs) was observed. Factors significantly associated with higher odds of delayed surgical treatment included clinical stage II (AOR = 1.56, 95 % CrI: 1.26-1.92), stage III (AOR = 1.90, 95 % CrI: 1.46-2.47), stage IV (AOR = 2.04, 95 % CrI: 1.15-3.61), treatment at inner regional hospitals (AOR = 2.86, 95 % CrI: 2.17-3.70), presence of comorbidities (AOR = 1.19, 95 % CrI: 1.02-1.40), and diagnosis during the COVID-19 pandemic (AOR = 1.32, 95 % CrI: 1.10-1.57).

Conclusions: This study highlights the need to improve the treatment pathway for patients with NSCLC by reducing the time between diagnosis and surgery. Future targeted initiatives are essential to promote timely surgeries for NSCLC patients, especially in high-need areas.

目的:延迟手术与肺癌疾病进展风险增加和不良结局显著相关。有证据表明非小细胞肺癌(NSCLC)患者延迟手术治疗的差异。然而,患者和区域水平的危险因素对NSCLC患者延迟手术的地理模式的相对贡献尚不清楚。因此,我们旨在探讨非小细胞肺癌患者延迟手术治疗的地理差异。材料和方法:本研究使用了维多利亚州肺癌登记处(VLCR)和澳大利亚统计局(ABS)的数据。共纳入了3,088例接受过手术的非小细胞肺癌患者。我们应用贝叶斯空间多层模型结合空间结构化和非结构化随机效应来检查与延迟手术治疗相关的患者和区域层面的风险因素。采用偏差信息准则(DIC)进行模型比较。结果:超过三分之一(40.45%)的非小细胞肺癌患者经历了延迟手术治疗。观察到不同地方政府区域(LGAs)的非小细胞肺癌患者延迟手术治疗的显著地理差异。与延迟手术治疗几率较高相关的因素包括临床II期(AOR = 1.56, 95% CrI: 1.26-1.92)、III期(AOR = 1.90, 95% CrI: 1.46-2.47)、IV期(AOR = 2.04, 95% CrI: 1.15-3.61)、在区域内医院治疗(AOR = 2.86, 95% CrI: 2.17-3.70)、是否存在合共病(AOR = 1.19, 95% CrI: 1.02-1.40)以及在COVID-19大流行期间诊断(AOR = 1.32, 95% CrI: 1.10-1.57)。结论:本研究强调需要通过缩短诊断和手术之间的时间来改善非小细胞肺癌患者的治疗途径。未来有针对性的举措对于促进NSCLC患者及时手术至关重要,特别是在高需求地区。
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引用次数: 0
Assessing the feasibility and external validity of natural language processing-extracted data for advanced lung cancer patients. 评估自然语言处理提取数据对晚期肺癌患者的可行性和外部有效性。
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-04 DOI: 10.1016/j.lungcan.2025.108080
Yuchen Li, Jennifer Law, Lisa W Le, Janice J N Li, Christopher Pettengell, Patricia Demarco, Michael Duong, David Merritt, Sean Davidson, Mike Sung, Qixuan Li, Sally Cm Lau, Sajda Zahir, Ryan Chu, Malcom Ryan, Khizar Karim, Josh Morganstein, Adrian Sacher, Lawson Eng, Frances A Shepherd, Penelope Bradbury, Geoffrey Liu, Natasha B Leighl

Background: Manual extraction of real-world clinical data for research can be time-consuming and prone to error. We assessed the feasibility of using natural language processing (NLP), an AI technique, to automate data extraction for patients with advanced lung cancer (aLC). We assessed the external validity of our NLP-extracted data by comparing our findings to those reported in the literature.

Methods: Patients diagnosed with stage IIIB or IV lung cancer between January 2015 to December 2017 at Princess Margaret Cancer Centre who received at least one dose of systemic therapy were included. Their electronic health records were provided to Pentavere's NLP platform, DARWENTM, in March 2019. Descriptive statistics summarized baseline patient and cancer characteristics, molecular biomarkers, and first-line systemic therapies. Cox multivariate models were used to evaluate prognostic factors for advanced non-small cell lung cancer (NSCLC) and small-cell lung cancer (SCLC) cohort.

Result: NLP extracted clinical information (n = 333 patients) in a total of 8 hours, with only a few missing data for smoking status (n = 2), and Eastern Cooperative Oncology Group (ECOG) status (n = 5). Baseline patient and cancer characteristics summarized from NLP-extracted data were comparable to those in previous studies and population reports. For NSCLC patients, being male (HR 1.44, 95 % CI [1.04, 2.00]), having worse ECOG (1.48 [1.22, 1.81]), and having liver (2.24 [1.45, 3.46]), bone (2.09 [1.48, 2.96]), or lung metastases (2.54 [1.05, 2.26]) were associated with worse survival outcomes. For SCLC patients, having older age (HR 1.70 per 10 years, 95 % CI [1.10, 2.63]) and liver metastases (3.81 [1.61, 9.01]) were associated with worse survival outcomes.

Conclusion: Our study demonstrated that automated data extraction using NLP is feasible and time efficient. Additionally, the NLP-extracted data can be used to identify valid and useful clinical endpoints for research. NLP holds significant potential to accelerate the extraction of real-world data for future observational studies.

背景:人工提取真实世界的临床数据用于研究可能耗时且容易出错。我们评估了使用自然语言处理(NLP)(一种人工智能技术)为晚期肺癌(aLC)患者自动提取数据的可行性。通过将我们的发现与文献报道的结果进行比较,我们评估了nlp提取数据的外部有效性。方法:纳入2015年1月至2017年12月在玛格丽特公主癌症中心诊断为IIIB或IV期肺癌的患者,这些患者接受了至少一剂全身治疗。他们的电子健康记录于2019年3月提供给Pentavere的NLP平台DARWENTM。描述性统计总结了基线患者和癌症特征、分子生物标志物和一线全身治疗。采用Cox多变量模型评价晚期非小细胞肺癌(NSCLC)和小细胞肺癌(SCLC)队列的预后因素。结果:NLP共在8小时内提取了临床信息(n = 333例),仅缺失了少量吸烟状态(n = 2)和东部肿瘤合作组(ECOG)状态(n = 5)的数据。从NLP提取的数据中总结的基线患者和癌症特征与既往研究和人群报告相当。对于非小细胞肺癌患者,男性(HR 1.44, 95% CI[1.04, 2.00])、较差的ECOG(1.48[1.22, 1.81])、肝脏(2.24[1.45,3.46])、骨骼(2.09[1.48,2.96])或肺转移(2.54[1.05,2.26])与较差的生存结果相关。对于SCLC患者,年龄较大(HR为1.70 / 10年,95% CI[1.10, 2.63])和肝转移(3.81[1.61,9.01])与较差的生存结果相关。结论:本研究证明了使用自然语言处理进行数据自动提取是可行且省时的。此外,nlp提取的数据可用于确定有效和有用的临床研究终点。NLP在加速提取现实世界数据以用于未来观察研究方面具有巨大潜力。
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引用次数: 0
Genomic analysis of comprehensive next generation sequencing data to explore the criteria for MET amplification as an actionable biomarker in NSCLC. 全面的下一代测序数据的基因组分析,探索MET扩增作为非小细胞肺癌可操作的生物标志物的标准。
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-04 DOI: 10.1016/j.lungcan.2025.108081
David Chun Cheong Tsui, Jessica K Lee, Candice Francheska B Tambaoan, Jason Hughes, Bernard Fendler, Brennan Decker, Garrett M Frampton, Alexa B Schrock, D Ross Camidge

Introduction: MET amplification (METamp) can be a de novo or acquired resistance driver; however, the definition of METamp that best captures patients who may respond to targeted therapy remains debated. We explored the genomic landscape of METamp NSCLC including degree of amplification, co-drivers, amplicon size, and outcomes to MET inhibitors.

Methods: Hybrid-capture NGS-based genomic profiling from 88,547 tissue and 12,428 liquid NSCLC samples were queried for METamp (copy number (CN) ≥ ploidy + 4, or amplification ratio (AmpRatio; [CN/sample ploidy] ≥ 3). A nationwide de-identified real-world (rw) clinico-genomic database (CGDB) of NGS results linked to deidentified, electronic health record-derived clinical data was used to assess treatment and outcomes.

Results: Among 10,760 evaluable patients in CGDB, 362 (3.4%) had a METamp. In targeted therapy-naïve cases, MET AmpRatio negatively correlated with non-METex14 co-drivers (median 4.1 vs 2.9, p < 0.0001). MET AmpRatio was not significantly correlated with tumor mutational burden (p = 0.79) but was inversely correlated with amplicon size (p < 0.001). Among paired METamp tissue samples, 8/30 had METamp detected in liquid; higher tumor fraction and AmpRatio were associated with liquid detection. Among 39 METamp patients receiving MET inhibitors, longer median real-world progression free survival was observed with MET AmpRatio ≥ 3 vs < 3 (4.9 vs. 1.7mos, HR 0.53 [95 %CI:0.21-1.3]).

Conclusions: MET AmpRatio positively correlated with focal amplification and absence of co-drivers and trended with increased benefit from MET inhibitors. Further studies evaluatingcombinatorial data including MET AmpRatio, amplicon size and presence of other potential drivers, as predictive biomarkers for therapies targeting MET amplification in NSCLC are warranted.

简介:MET放大器(METamp)可以是一个新的或获得电阻驱动器;然而,METamp的定义仍然存在争议,该定义最好地捕获了可能对靶向治疗有反应的患者。我们探索了METamp NSCLC的基因组景观,包括扩增程度、共同驱动因素、扩增子大小和MET抑制剂的结果。方法:从88,547例组织和12,428例NSCLC液体样本中查询基于混合捕获ngs的基因组图谱,检测METamp(拷贝数(CN)≥倍体+ 4,或扩增比(AmpRatio;[cn /样本倍性]≥3)。NGS结果的全国去识别现实世界(rw)临床基因组数据库(CGDB)与去识别的电子健康记录衍生临床数据相关联,用于评估治疗和结果。结果:在10760例可评估的CGDB患者中,362例(3.4%)有METamp。在靶向therapy-naïve病例中,MET AmpRatio与非metex14共同驱动因素呈负相关(中位数为4.1 vs 2.9, p)。结论:MET AmpRatio与病灶放大和缺乏共同驱动因素呈正相关,并且MET抑制剂的获益增加。进一步的研究评估组合数据,包括MET扩增比、扩增子大小和其他潜在驱动因素的存在,作为非小细胞肺癌MET扩增治疗的预测性生物标志物是有必要的。
{"title":"Genomic analysis of comprehensive next generation sequencing data to explore the criteria for MET amplification as an actionable biomarker in NSCLC.","authors":"David Chun Cheong Tsui, Jessica K Lee, Candice Francheska B Tambaoan, Jason Hughes, Bernard Fendler, Brennan Decker, Garrett M Frampton, Alexa B Schrock, D Ross Camidge","doi":"10.1016/j.lungcan.2025.108081","DOIUrl":"https://doi.org/10.1016/j.lungcan.2025.108081","url":null,"abstract":"<p><strong>Introduction: </strong>MET amplification (METamp) can be a de novo or acquired resistance driver; however, the definition of METamp that best captures patients who may respond to targeted therapy remains debated. We explored the genomic landscape of METamp NSCLC including degree of amplification, co-drivers, amplicon size, and outcomes to MET inhibitors.</p><p><strong>Methods: </strong>Hybrid-capture NGS-based genomic profiling from 88,547 tissue and 12,428 liquid NSCLC samples were queried for METamp (copy number (CN) ≥ ploidy + 4, or amplification ratio (AmpRatio; [CN/sample ploidy] ≥ 3). A nationwide de-identified real-world (rw) clinico-genomic database (CGDB) of NGS results linked to deidentified, electronic health record-derived clinical data was used to assess treatment and outcomes.</p><p><strong>Results: </strong>Among 10,760 evaluable patients in CGDB, 362 (3.4%) had a METamp. In targeted therapy-naïve cases, MET AmpRatio negatively correlated with non-METex14 co-drivers (median 4.1 vs 2.9, p < 0.0001). MET AmpRatio was not significantly correlated with tumor mutational burden (p = 0.79) but was inversely correlated with amplicon size (p < 0.001). Among paired METamp tissue samples, 8/30 had METamp detected in liquid; higher tumor fraction and AmpRatio were associated with liquid detection. Among 39 METamp patients receiving MET inhibitors, longer median real-world progression free survival was observed with MET AmpRatio ≥ 3 vs < 3 (4.9 vs. 1.7mos, HR 0.53 [95 %CI:0.21-1.3]).</p><p><strong>Conclusions: </strong>MET AmpRatio positively correlated with focal amplification and absence of co-drivers and trended with increased benefit from MET inhibitors. Further studies evaluatingcombinatorial data including MET AmpRatio, amplicon size and presence of other potential drivers, as predictive biomarkers for therapies targeting MET amplification in NSCLC are warranted.</p>","PeriodicalId":18129,"journal":{"name":"Lung Cancer","volume":"199 ","pages":"108081"},"PeriodicalIF":4.5,"publicationDate":"2025-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142965520","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Asian Thoracic Oncology Research Group expert consensus statement on the peri-operative management of non-small cell lung cancer. 亚洲胸肿瘤研究小组关于非小细胞肺癌围手术期治疗的专家共识声明。
IF 4.5 2区 医学 Q1 ONCOLOGY Pub Date : 2025-01-02 DOI: 10.1016/j.lungcan.2024.108076
Stephanie P L Saw, Wen-Zhao Zhong, Rui Fu, Molly S C Li, Yasushi Goto, Stephen B Fox, Yasushi Yatabe, Boon-Hean Ong, Calvin S H Ng, David D W Lee, Pham Cam Phuong, In Kyu Park, James C H Yang, Masahiro Tsuboi, Lye Mun Tho, Thomas John, Hsao-Hsun Hsu, Daniel S W Tan, Tony S K Mok, Thanyanan Reungwetwattana, Navneet Singh

The peri-operative management of non-small cell lung cancer (NSCLC) in earlier stage disease has seen significant advances in recent years with the incorporation of immune checkpoint inhibitors and targeted therapy. However, many unanswered questions and challenges remain, including the application of clinical trial data to routine clinical practice. Recognising the unique demographic profile of Asian patients with NSCLC and heterogeneous healthcare systems, the Asian Thoracic Oncology Research Group (ATORG) convened a consensus meeting in Singapore on 26 April 2024 to discuss relevant issues spanning diagnostic testing to post-neoadjuvant treatment considerations and future directions. An interdisciplinary group of 19 experts comprising medical oncologists, thoracic surgeons, radiation oncologists, pulmonologists and pathologists from Singapore, Hong Kong, Mainland China, Korea, Japan, Taiwan, India, Malaysia, Thailand, Vietnam and Australia met to discuss emerging data, identify existing gaps in clinical care and develop a multidisciplinary, multinational expert consensus statement on the peri-operative management of NSCLC tailored to the Asia-Pacific region.

近年来,随着免疫检查点抑制剂和靶向治疗的结合,早期非小细胞肺癌(NSCLC)的围手术期治疗取得了重大进展。然而,许多未解决的问题和挑战仍然存在,包括临床试验数据在常规临床实践中的应用。认识到亚洲非小细胞肺癌患者独特的人口统计学特征和不同的医疗保健系统,亚洲胸部肿瘤研究小组(ATORG)于2024年4月26日在新加坡召开了一次共识会议,讨论从诊断测试到新辅助治疗后考虑和未来方向的相关问题。
{"title":"Asian Thoracic Oncology Research Group expert consensus statement on the peri-operative management of non-small cell lung cancer.","authors":"Stephanie P L Saw, Wen-Zhao Zhong, Rui Fu, Molly S C Li, Yasushi Goto, Stephen B Fox, Yasushi Yatabe, Boon-Hean Ong, Calvin S H Ng, David D W Lee, Pham Cam Phuong, In Kyu Park, James C H Yang, Masahiro Tsuboi, Lye Mun Tho, Thomas John, Hsao-Hsun Hsu, Daniel S W Tan, Tony S K Mok, Thanyanan Reungwetwattana, Navneet Singh","doi":"10.1016/j.lungcan.2024.108076","DOIUrl":"https://doi.org/10.1016/j.lungcan.2024.108076","url":null,"abstract":"<p><p>The peri-operative management of non-small cell lung cancer (NSCLC) in earlier stage disease has seen significant advances in recent years with the incorporation of immune checkpoint inhibitors and targeted therapy. However, many unanswered questions and challenges remain, including the application of clinical trial data to routine clinical practice. Recognising the unique demographic profile of Asian patients with NSCLC and heterogeneous healthcare systems, the Asian Thoracic Oncology Research Group (ATORG) convened a consensus meeting in Singapore on 26 April 2024 to discuss relevant issues spanning diagnostic testing to post-neoadjuvant treatment considerations and future directions. An interdisciplinary group of 19 experts comprising medical oncologists, thoracic surgeons, radiation oncologists, pulmonologists and pathologists from Singapore, Hong Kong, Mainland China, Korea, Japan, Taiwan, India, Malaysia, Thailand, Vietnam and Australia met to discuss emerging data, identify existing gaps in clinical care and develop a multidisciplinary, multinational expert consensus statement on the peri-operative management of NSCLC tailored to the Asia-Pacific region.</p>","PeriodicalId":18129,"journal":{"name":"Lung Cancer","volume":"200 ","pages":"108076"},"PeriodicalIF":4.5,"publicationDate":"2025-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142971497","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Lung Cancer
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